Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45368.t1 | XP_013447550.1 | 99.3 | 139 | 1 | 0 | 1 | 139 | 33 | 171 | 4.10E-65 | 257.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45368.t1 | Q9LVP9 | 71.9 | 139 | 39 | 0 | 1 | 139 | 33 | 171 | 1.2e-49 | 197.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45368.t1 | B7FGM6 | 99.3 | 139 | 1 | 0 | 1 | 139 | 33 | 171 | 2.9e-65 | 257.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059849 | MS.gene45368 | 0.805827 | 1.11E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45368.t1 | MTR_7g011570 | 99.281 | 139 | 1 | 0 | 1 | 139 | 33 | 171 | 2.44e-97 | 279 |
| MS.gene45368.t1 | MTR_7g011570 | 99.281 | 139 | 1 | 0 | 1 | 139 | 115 | 253 | 1.10e-95 | 278 |
| MS.gene45368.t1 | MTR_6g012860 | 84.892 | 139 | 21 | 0 | 1 | 139 | 33 | 171 | 1.57e-83 | 244 |
| MS.gene45368.t1 | MTR_3g037380 | 66.423 | 137 | 46 | 0 | 1 | 137 | 33 | 169 | 2.17e-61 | 188 |
| MS.gene45368.t1 | MTR_5g042530 | 65.693 | 137 | 47 | 0 | 1 | 137 | 34 | 170 | 3.04e-58 | 180 |
| MS.gene45368.t1 | MTR_3g037380 | 66.957 | 115 | 38 | 0 | 23 | 137 | 1 | 115 | 1.25e-50 | 159 |
| MS.gene45368.t1 | MTR_5g042530 | 67.826 | 115 | 37 | 0 | 23 | 137 | 1 | 115 | 3.46e-49 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45368.t1 | AT3G29100 | 71.942 | 139 | 39 | 0 | 1 | 139 | 33 | 171 | 1.33e-70 | 211 |
| MS.gene45368.t1 | AT5G39510 | 69.065 | 139 | 43 | 0 | 1 | 139 | 33 | 171 | 1.06e-66 | 201 |
| MS.gene45368.t1 | AT1G26670 | 65.217 | 138 | 48 | 0 | 1 | 138 | 34 | 171 | 1.47e-59 | 183 |
| MS.gene45368.t1 | AT3G29100 | 71.667 | 120 | 34 | 0 | 20 | 139 | 26 | 145 | 4.08e-59 | 181 |
| MS.gene45368.t1 | AT3G29100 | 72.650 | 117 | 32 | 0 | 23 | 139 | 1 | 117 | 7.76e-58 | 177 |
| MS.gene45368.t1 | AT3G29100 | 72.650 | 117 | 32 | 0 | 23 | 139 | 1 | 117 | 7.76e-58 | 177 |
| MS.gene45368.t1 | AT3G29100 | 72.650 | 117 | 32 | 0 | 23 | 139 | 1 | 117 | 7.76e-58 | 177 |
| MS.gene45368.t1 | AT5G39630 | 46.617 | 133 | 67 | 1 | 1 | 133 | 33 | 161 | 8.03e-30 | 107 |
Find 31 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATTTGTAGATTCGGAAAA+TGG | 0.148334 | 7.3:+86244978 | MS.gene45368:intron |
| AAGTTTGCAGCCAAACATTA+AGG | 0.247833 | 7.3:+86245014 | MS.gene45368:CDS |
| GCAAAATATTTCAGATATAA+AGG | 0.306073 | 7.3:+86244849 | MS.gene45368:CDS |
| CAAATCTAGTGACAGAATTA+AGG | 0.325551 | 7.3:+86246821 | MS.gene45368:CDS |
| CGGGATATGTTGTTGGAATC+AGG | 0.359202 | 7.3:+86245135 | MS.gene45368:CDS |
| TGTTGGAAACGGAAGAGCTT+GGG | 0.371438 | 7.3:+86246859 | MS.gene45368:CDS |
| GAACTTAAGAAACTTGTATC+TGG | 0.383535 | 7.3:+86245093 | MS.gene45368:CDS |
| TGTACTTCTTGCTAAGTTGC+GGG | 0.406118 | 7.3:+86245038 | MS.gene45368:CDS |
| AGAAGTACACCCTTAATGTT+TGG | 0.429162 | 7.3:-86245024 | None:intergenic |
| CTCTGCCCGGGATATGTTGT+TGG | 0.438296 | 7.3:+86245128 | MS.gene45368:CDS |
| AGTTTGCAGCCAAACATTAA+GGG | 0.439151 | 7.3:+86245015 | MS.gene45368:CDS |
| AATCGATGAGGCAGAAGCTT+TGG | 0.451935 | 7.3:+86244876 | MS.gene45368:CDS |
| GCTGAGAATGCAAATCTTGA+AGG | 0.459483 | 7.3:-86246890 | None:intergenic |
| AATATTTCAGATATAAAGGC+TGG | 0.486099 | 7.3:+86244853 | MS.gene45368:CDS |
| GTGACAGAATTAAGGACAGC+AGG | 0.496887 | 7.3:+86246829 | MS.gene45368:CDS |
| GTAACATGAACCCCTCTGCC+CGG | 0.498653 | 7.3:+86245115 | MS.gene45368:CDS |
| CTGATTCCAACAACATATCC+CGG | 0.518713 | 7.3:-86245134 | None:intergenic |
| GTGTACTTCTTGCTAAGTTG+CGG | 0.523629 | 7.3:+86245037 | MS.gene45368:CDS |
| GGACAGCAGGAGAACAATGT+TGG | 0.535680 | 7.3:+86246842 | MS.gene45368:CDS |
| CAGGAGAACAATGTTGGAAA+CGG | 0.537387 | 7.3:+86246848 | MS.gene45368:CDS |
| CAACAACATATCCCGGGCAG+AGG | 0.549166 | 7.3:-86245127 | None:intergenic |
| TAACATGAACCCCTCTGCCC+GGG | 0.559609 | 7.3:+86245116 | MS.gene45368:CDS |
| ATGTTGGAAACGGAAGAGCT+TGG | 0.571336 | 7.3:+86246858 | MS.gene45368:CDS |
| AACAACATATCCCGGGCAGA+GGG | 0.578673 | 7.3:-86245126 | None:intergenic |
| GTTGGAAACGGAAGAGCTTG+GGG | 0.586866 | 7.3:+86246860 | MS.gene45368:CDS |
| GATTCGGAAAATGGATCTTG+AGG | 0.594367 | 7.3:+86244987 | MS.gene45368:intron |
| AGGCATGGCAGATGCTATGA+CGG | 0.603594 | 7.3:+86245155 | MS.gene45368:CDS |
| TGATTCCAACAACATATCCC+GGG | 0.605197 | 7.3:-86245133 | None:intergenic |
| TATGTTGTTGGAATCAGGCA+TGG | 0.631211 | 7.3:+86245140 | MS.gene45368:CDS |
| TATAAAGGCTGGAATCGATG+AGG | 0.704491 | 7.3:+86244864 | MS.gene45368:CDS |
| ACAACATATCCCGGGCAGAG+GGG | 0.706468 | 7.3:-86245125 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAATAATAATAA+GGG | + | chr7.3:86245755-86245774 | MS.gene45368:intron | 0.0% |
| !! | ATATATATATATATATATAT+AGG | + | chr7.3:86245358-86245377 | MS.gene45368:intron | 0.0% |
| !! | TAATAATAATAATAATAATA+AGG | + | chr7.3:86245754-86245773 | MS.gene45368:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr7.3:86245357-86245376 | MS.gene45368:intron | 0.0% |
| !! | AAAACATTTATTGAAATATA+AGG | - | chr7.3:86245991-86246010 | None:intergenic | 10.0% |
| !! | ACTTTATTATTATTATGATT+AGG | - | chr7.3:86246258-86246277 | None:intergenic | 10.0% |
| !! | ATATTTAACCTTAAAATAAT+TGG | - | chr7.3:86245928-86245947 | None:intergenic | 10.0% |
| !! | ATCATAATAATAATAAAGTT+AGG | + | chr7.3:86246259-86246278 | MS.gene45368:intron | 10.0% |
| !! | CTTTATTATTATTATGATTA+GGG | - | chr7.3:86246257-86246276 | None:intergenic | 10.0% |
| !! | TATTTAACCTTAAAATAATT+GGG | - | chr7.3:86245927-86245946 | None:intergenic | 10.0% |
| !! | AAAAACATTTAATGAAATGT+AGG | + | chr7.3:86246182-86246201 | MS.gene45368:intron | 15.0% |
| !! | AAAAACATTTAATGAAATGT+AGG | - | chr7.3:86246201-86246182 | None:intergenic | 15.0% |
| !! | AAAACATTTAATGAAATGTA+GGG | + | chr7.3:86246183-86246202 | MS.gene45368:intron | 15.0% |
| !! | AAAACATTTAATGAAATGTA+GGG | - | chr7.3:86246202-86246183 | None:intergenic | 15.0% |
| !! | ATATTTAACCCTAAAATAAT+TGG | + | chr7.3:86246073-86246092 | MS.gene45368:intron | 15.0% |
| !! | TATTTAACCCTAAAATAATT+GGG | + | chr7.3:86246074-86246093 | MS.gene45368:intron | 15.0% |
| !! | TTAAAATCCCTAAAATAATA+AGG | + | chr7.3:86246010-86246029 | MS.gene45368:intron | 15.0% |
| !!! | TTTAAGGTTAAATATGTTTT+TGG | + | chr7.3:86245933-86245952 | MS.gene45368:intron | 15.0% |
| !! | AAGTTAATAAATACACCTTA+AGG | - | chr7.3:86245637-86245656 | None:intergenic | 20.0% |
| !! | AGAAATATAAACTTTCTGTA+CGG | + | chr7.3:86246372-86246391 | MS.gene45368:intron | 20.0% |
| !! | GCAAAATATTTCAGATATAA+AGG | + | chr7.3:86244849-86244868 | MS.gene45368:CDS | 20.0% |
| !! | TTAAAACATCAGGAATTAAA+TGG | - | chr7.3:86246648-86246667 | None:intergenic | 20.0% |
| !!! | AGAATAGTCCTTATTATTTT+AGG | - | chr7.3:86246021-86246040 | None:intergenic | 20.0% |
| !!! | ATTTGGTTGAATTTTTACTA+TGG | + | chr7.3:86246322-86246341 | MS.gene45368:intron | 20.0% |
| !!! | CAGAAAGTTTATATTTCTTT+TGG | - | chr7.3:86246370-86246389 | None:intergenic | 20.0% |
| !!! | CTATATAATTTGTGAAGATT+TGG | + | chr7.3:86246305-86246324 | MS.gene45368:intron | 20.0% |
| !!! | CTCAATTAATTTAAAACATC+AGG | - | chr7.3:86246658-86246677 | None:intergenic | 20.0% |
| !!! | GAATAGTCCTTATTATTTTA+GGG | - | chr7.3:86246020-86246039 | None:intergenic | 20.0% |
| !!! | TCTGAATATTCATTTTTCTT+GGG | + | chr7.3:86246695-86246714 | MS.gene45368:intron | 20.0% |
| !!! | TTCTGAATATTCATTTTTCT+TGG | + | chr7.3:86246694-86246713 | MS.gene45368:intron | 20.0% |
| ! | AATATTTCAGATATAAAGGC+TGG | + | chr7.3:86244853-86244872 | MS.gene45368:CDS | 25.0% |
| ! | GAAATATAAACTTTCTGTAC+GGG | + | chr7.3:86246373-86246392 | MS.gene45368:intron | 25.0% |
| ! | GCTTTCAAACAAAATGAAAA+AGG | - | chr7.3:86244913-86244932 | None:intergenic | 25.0% |
| ! | TAAGCAATAGGAATCAAATT+TGG | - | chr7.3:86246730-86246749 | None:intergenic | 25.0% |
| ! | TCAAAATCACGCAAAATATA+GGG | - | chr7.3:86245960-86245979 | None:intergenic | 25.0% |
| ! | TTCAAAATCACGCAAAATAT+AGG | - | chr7.3:86245961-86245980 | None:intergenic | 25.0% |
| !! | TTTAGGGTTAAATATGTTTG+TGG | - | chr7.3:86246068-86246087 | None:intergenic | 25.0% |
| !!! | ACATTTTAGAACAGTAGTTA+TGG | + | chr7.3:86246429-86246448 | MS.gene45368:intron | 25.0% |
| ACCTTCTAACAAAAACAAGT+GGG | - | chr7.3:86245596-86245615 | None:intergenic | 30.0% | |
| ATGTAGGGACTATTATTCAA+AGG | - | chr7.3:86245802-86245821 | None:intergenic | 30.0% | |
| CAAATCTAGTGACAGAATTA+AGG | + | chr7.3:86246821-86246840 | MS.gene45368:CDS | 30.0% | |
| CAATAGGAATCAAATTTGGT+GGG | - | chr7.3:86246726-86246745 | None:intergenic | 30.0% | |
| CATGGTTTCACAGAATATAA+AGG | - | chr7.3:86245276-86245295 | None:intergenic | 30.0% | |
| CCTTCTTTCTTCTGTATTAT+GGG | + | chr7.3:86244935-86244954 | MS.gene45368:intron | 30.0% | |
| GAACTTAAGAAACTTGTATC+TGG | + | chr7.3:86245093-86245112 | MS.gene45368:CDS | 30.0% | |
| GCAAGTGAATAACTAAAAAG+TGG | - | chr7.3:86245505-86245524 | None:intergenic | 30.0% | |
| TATATTCTGTGAAACCATGA+TGG | + | chr7.3:86245277-86245296 | MS.gene45368:intron | 30.0% | |
| TCCTTCTTTCTTCTGTATTA+TGG | + | chr7.3:86244934-86244953 | MS.gene45368:intron | 30.0% | |
| TGTAGGGACTATTATTCAAA+GGG | - | chr7.3:86245801-86245820 | None:intergenic | 30.0% | |
| TTATAGCAACATACACCTTA+AGG | + | chr7.3:86245619-86245638 | MS.gene45368:intron | 30.0% | |
| TTCACAGAATATAAAGGAGA+TGG | - | chr7.3:86245270-86245289 | None:intergenic | 30.0% | |
| ! | AAATGCCATTTGCAACATTA+GGG | - | chr7.3:86246622-86246641 | None:intergenic | 30.0% |
| ! | AATAGGAATCAAATTTGGTG+GGG | - | chr7.3:86246725-86246744 | None:intergenic | 30.0% |
| ! | ACTCCTTCTAAAAAGTAAGT+GGG | + | chr7.3:86245531-86245550 | MS.gene45368:intron | 30.0% |
| ! | TACTCCTTCTAAAAAGTAAG+TGG | + | chr7.3:86245530-86245549 | MS.gene45368:intron | 30.0% |
| ! | TGACTTGAAACTTTAGAGAT+TGG | - | chr7.3:86245322-86245341 | None:intergenic | 30.0% |
| !! | ACACTCTTTGATGATGTTAA+AGG | + | chr7.3:86245197-86245216 | MS.gene45368:intron | 30.0% |
| !! | CAACGACTAATTTTGATAAC+GGG | - | chr7.3:86245860-86245879 | None:intergenic | 30.0% |
| !! | GCAACGACTAATTTTGATAA+CGG | - | chr7.3:86245861-86245880 | None:intergenic | 30.0% |
| !! | TGCTTATCGATTTGTAGATT+CGG | + | chr7.3:86244971-86244990 | MS.gene45368:intron | 30.0% |
| !!! | AACGACTAATTTTGATAACG+GGG | - | chr7.3:86245859-86245878 | None:intergenic | 30.0% |
| AAGTGGTTAAATACACCCTA+AGG | - | chr7.3:86245488-86245507 | None:intergenic | 35.0% | |
| AAGTTTGCAGCCAAACATTA+AGG | + | chr7.3:86245014-86245033 | MS.gene45368:CDS | 35.0% | |
| ACAAAATGAAAAAGGCGAAG+AGG | - | chr7.3:86244905-86244924 | None:intergenic | 35.0% | |
| ACAGAATATAAAGGAGATGG+AGG | - | chr7.3:86245267-86245286 | None:intergenic | 35.0% | |
| ACCAATTCTTTGCGTTATCA+TGG | - | chr7.3:86245244-86245263 | None:intergenic | 35.0% | |
| ACTCCCACATAAAAACTAGT+GGG | - | chr7.3:86245448-86245467 | None:intergenic | 35.0% | |
| AGTTTGCAGCCAAACATTAA+GGG | + | chr7.3:86245015-86245034 | MS.gene45368:CDS | 35.0% | |
| ATTGCTAATCTGGCAAAAAC+AGG | + | chr7.3:86246749-86246768 | MS.gene45368:intron | 35.0% | |
| CAAAATGAAAAAGGCGAAGA+GGG | - | chr7.3:86244904-86244923 | None:intergenic | 35.0% | |
| CACCTTCTAACAAAAACAAG+TGG | - | chr7.3:86245597-86245616 | None:intergenic | 35.0% | |
| CCAGATTAGCAATAAGCAAT+AGG | - | chr7.3:86246742-86246761 | None:intergenic | 35.0% | |
| CCCATAATACAGAAGAAAGA+AGG | - | chr7.3:86244938-86244957 | None:intergenic | 35.0% | |
| CCTATTGCTTATTGCTAATC+TGG | + | chr7.3:86246739-86246758 | MS.gene45368:intron | 35.0% | |
| CGATTTGTAGATTCGGAAAA+TGG | + | chr7.3:86244978-86244997 | MS.gene45368:intron | 35.0% | |
| CTCTAACGGAAATTCTGATT+TGG | + | chr7.3:86245889-86245908 | MS.gene45368:intron | 35.0% | |
| GCAATAGGAATCAAATTTGG+TGG | - | chr7.3:86246727-86246746 | None:intergenic | 35.0% | |
| GTAGGGACTATTATTCAAAG+GGG | - | chr7.3:86245800-86245819 | None:intergenic | 35.0% | |
| GTGTTCTAGCAAATCCTATA+GGG | - | chr7.3:86245572-86245591 | None:intergenic | 35.0% | |
| TAAAGTTAGGAAGACAGTAG+AGG | + | chr7.3:86246272-86246291 | MS.gene45368:intron | 35.0% | |
| TCAAAGTCACGCAAAATGTA+GGG | + | chr7.3:86246041-86246060 | MS.gene45368:intron | 35.0% | |
| TCTCTTCAGACATTTCATGT+TGG | + | chr7.3:86246569-86246588 | MS.gene45368:intron | 35.0% | |
| TGGTCTCACATAACAATGAA+TGG | - | chr7.3:86245224-86245243 | None:intergenic | 35.0% | |
| TGTGTTCTAGCAAATCCTAT+AGG | - | chr7.3:86245573-86245592 | None:intergenic | 35.0% | |
| TGTTCTAGCAAATCCTATAG+GGG | - | chr7.3:86245571-86245590 | None:intergenic | 35.0% | |
| TTCAAAGTCACGCAAAATGT+AGG | + | chr7.3:86246040-86246059 | MS.gene45368:intron | 35.0% | |
| TTTAGCAAAGCTACACCTTA+GGG | + | chr7.3:86245470-86245489 | MS.gene45368:intron | 35.0% | |
| ! | ACCATGATAACGCAAAGAAT+TGG | + | chr7.3:86245240-86245259 | MS.gene45368:intron | 35.0% |
| ! | AGAAGTACACCCTTAATGTT+TGG | - | chr7.3:86245027-86245046 | None:intergenic | 35.0% |
| ! | CGTTGCTGTTAATTCTCTAA+CGG | + | chr7.3:86245875-86245894 | MS.gene45368:intron | 35.0% |
| ! | GAAATGCCATTTGCAACATT+AGG | - | chr7.3:86246623-86246642 | None:intergenic | 35.0% |
| ! | TTTTAGCAAAGCTACACCTT+AGG | + | chr7.3:86245469-86245488 | MS.gene45368:intron | 35.0% |
| !! | AATTCTGATTTGGCAGTTAG+TGG | + | chr7.3:86245899-86245918 | MS.gene45368:intron | 35.0% |
| !! | AGTGGGTCCCAATTATTTTA+AGG | + | chr7.3:86245917-86245936 | MS.gene45368:intron | 35.0% |
| !! | AGTGGGTCCCAATTATTTTA+GGG | - | chr7.3:86245936-86245917 | None:intergenic | 35.0% |
| !! | ATTCTGATTTGGCAGTTAGT+GGG | + | chr7.3:86245900-86245919 | MS.gene45368:intron | 35.0% |
| !! | TAGTGGGTCCCAATTATTTT+AGG | - | chr7.3:86245935-86245916 | None:intergenic | 35.0% |
| !!! | ACACCCACTAGTTTTTATGT+GGG | + | chr7.3:86245442-86245461 | MS.gene45368:intron | 35.0% |
| !!! | ACACCCACTTACTTTTTAGA+AGG | - | chr7.3:86245537-86245556 | None:intergenic | 35.0% |
| !!! | ACCCACTTGTTTTTGTTAGA+AGG | + | chr7.3:86245592-86245611 | MS.gene45368:intron | 35.0% |
| CACTCCCACATAAAAACTAG+TGG | - | chr7.3:86245449-86245468 | None:intergenic | 40.0% | |
| CAGGAGAACAATGTTGGAAA+CGG | + | chr7.3:86246848-86246867 | MS.gene45368:CDS | 40.0% | |
| CTGATTCCAACAACATATCC+CGG | - | chr7.3:86245137-86245156 | None:intergenic | 40.0% | |
| CTTCAGACATTTCATGTTGG+TGG | + | chr7.3:86246572-86246591 | MS.gene45368:intron | 40.0% | |
| GAGAACGGAGATAAAATGTG+AGG | + | chr7.3:86246154-86246173 | MS.gene45368:intron | 40.0% | |
| GATTCGGAAAATGGATCTTG+AGG | + | chr7.3:86244987-86245006 | MS.gene45368:intron | 40.0% | |
| GCATCCCGTTAGAGAATTAA+CGG | + | chr7.3:86246117-86246136 | MS.gene45368:intron | 40.0% | |
| GCTGAGAATGCAAATCTTGA+AGG | - | chr7.3:86246893-86246912 | None:intergenic | 40.0% | |
| GTAGGGACTATTCTTCAAAG+AGG | + | chr7.3:86246200-86246219 | MS.gene45368:intron | 40.0% | |
| GTGTACTTCTTGCTAAGTTG+CGG | + | chr7.3:86245037-86245056 | MS.gene45368:CDS | 40.0% | |
| TATAAAGGCTGGAATCGATG+AGG | + | chr7.3:86244864-86244883 | MS.gene45368:CDS | 40.0% | |
| TATGTTGTTGGAATCAGGCA+TGG | + | chr7.3:86245140-86245159 | MS.gene45368:CDS | 40.0% | |
| TGATTCCAACAACATATCCC+GGG | - | chr7.3:86245136-86245155 | None:intergenic | 40.0% | |
| TGTACTTCTTGCTAAGTTGC+GGG | + | chr7.3:86245038-86245057 | MS.gene45368:CDS | 40.0% | |
| TTGAGCCCTAATGTTGCAAA+TGG | + | chr7.3:86246614-86246633 | MS.gene45368:intron | 40.0% | |
| ! | AAATCCTATAGGGGTTTGCT+AGG | - | chr7.3:86245562-86245581 | None:intergenic | 40.0% |
| ! | TCAAAGAGGCGCAAAATGTA+AGG | + | chr7.3:86246214-86246233 | MS.gene45368:intron | 40.0% |
| !! | GATAACGGGGATAAAATGTG+AGG | - | chr7.3:86245846-86245865 | None:intergenic | 40.0% |
| !! | GCAGGGACTAATTTTGAGAA+CGG | + | chr7.3:86246139-86246158 | MS.gene45368:intron | 40.0% |
| !!! | CACACCCACTAGTTTTTATG+TGG | + | chr7.3:86245441-86245460 | MS.gene45368:intron | 40.0% |
| AAACCATGATGGCTACGTAC+TGG | + | chr7.3:86245288-86245307 | MS.gene45368:intron | 45.0% | |
| AATCGATGAGGCAGAAGCTT+TGG | + | chr7.3:86244876-86244895 | MS.gene45368:CDS | 45.0% | |
| ATGCTGATGTGGCAGTTAGT+GGG | - | chr7.3:86246101-86246120 | None:intergenic | 45.0% | |
| ATGTTGGAAACGGAAGAGCT+TGG | + | chr7.3:86246858-86246877 | MS.gene45368:CDS | 45.0% | |
| CCCTGCCGTTAATTCTCTAA+CGG | - | chr7.3:86246125-86246144 | None:intergenic | 45.0% | |
| CCGTTAGAGAATTAACGGCA+GGG | + | chr7.3:86246122-86246141 | MS.gene45368:intron | 45.0% | |
| CCTGCCGTTAATTCTCTAAC+GGG | - | chr7.3:86246124-86246143 | None:intergenic | 45.0% | |
| CGGGATATGTTGTTGGAATC+AGG | + | chr7.3:86245135-86245154 | MS.gene45368:CDS | 45.0% | |
| GTATCCTAGCAAACCCCTAT+AGG | + | chr7.3:86245555-86245574 | MS.gene45368:intron | 45.0% | |
| GTGACAGAATTAAGGACAGC+AGG | + | chr7.3:86246829-86246848 | MS.gene45368:CDS | 45.0% | |
| TGTTGGAAACGGAAGAGCTT+GGG | + | chr7.3:86246859-86246878 | MS.gene45368:CDS | 45.0% | |
| !! | CATGTTGGTGGTGCACAAAA+TGG | + | chr7.3:86246584-86246603 | MS.gene45368:intron | 45.0% |
| !!! | TCTTTTGGTGTTTGCCTCAC+TGG | - | chr7.3:86246355-86246374 | None:intergenic | 45.0% |
| !! | ATATATATATATATATATGT+GGG | - | chr7.3:86245685-86245704 | None:intergenic | 5.0% |
| !! | TATATATATATATATATATG+TGG | - | chr7.3:86245686-86245705 | None:intergenic | 5.0% |
| AACAACATATCCCGGGCAGA+GGG | - | chr7.3:86245129-86245148 | None:intergenic | 50.0% | |
| AAGCCAGTACGTAGCCATCA+TGG | - | chr7.3:86245294-86245313 | None:intergenic | 50.0% | |
| ACTATGGACTCCTTCCAGTG+AGG | + | chr7.3:86246338-86246357 | MS.gene45368:intron | 50.0% | |
| AGGCATGGCAGATGCTATGA+CGG | + | chr7.3:86245155-86245174 | MS.gene45368:CDS | 50.0% | |
| CCCGTTAGAGAATTAACGGC+AGG | + | chr7.3:86246121-86246140 | MS.gene45368:intron | 50.0% | |
| GATGCTGATGTGGCAGTTAG+TGG | - | chr7.3:86246102-86246121 | None:intergenic | 50.0% | |
| GGACAGCAGGAGAACAATGT+TGG | + | chr7.3:86246842-86246861 | MS.gene45368:CDS | 50.0% | |
| GTTGGAAACGGAAGAGCTTG+GGG | + | chr7.3:86246860-86246879 | MS.gene45368:CDS | 50.0% | |
| TCTCTAACGGGATGCTGATG+TGG | - | chr7.3:86246112-86246131 | None:intergenic | 50.0% | |
| ! | TTGGTGTTTGCCTCACTGGA+AGG | - | chr7.3:86246351-86246370 | None:intergenic | 50.0% |
| ACAACATATCCCGGGCAGAG+GGG | - | chr7.3:86245128-86245147 | None:intergenic | 55.0% | |
| CAACAACATATCCCGGGCAG+AGG | - | chr7.3:86245130-86245149 | None:intergenic | 55.0% | |
| CTCTGCCCGGGATATGTTGT+TGG | + | chr7.3:86245128-86245147 | MS.gene45368:CDS | 55.0% | |
| GTAACATGAACCCCTCTGCC+CGG | + | chr7.3:86245115-86245134 | MS.gene45368:CDS | 55.0% | |
| TAACATGAACCCCTCTGCCC+GGG | + | chr7.3:86245116-86245135 | MS.gene45368:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 86244841 | 86246941 | 86244841 | ID=MS.gene45368 |
| chr7.3 | mRNA | 86244841 | 86246941 | 86244841 | ID=MS.gene45368.t1;Parent=MS.gene45368 |
| chr7.3 | exon | 86244841 | 86244897 | 86244841 | ID=MS.gene45368.t1.exon1;Parent=MS.gene45368.t1 |
| chr7.3 | CDS | 86244841 | 86244897 | 86244841 | ID=cds.MS.gene45368.t1;Parent=MS.gene45368.t1 |
| chr7.3 | exon | 86244988 | 86245176 | 86244988 | ID=MS.gene45368.t1.exon2;Parent=MS.gene45368.t1 |
| chr7.3 | CDS | 86244988 | 86245176 | 86244988 | ID=cds.MS.gene45368.t1;Parent=MS.gene45368.t1 |
| chr7.3 | exon | 86246771 | 86246941 | 86246771 | ID=MS.gene45368.t1.exon3;Parent=MS.gene45368.t1 |
| chr7.3 | CDS | 86246771 | 86246941 | 86246771 | ID=cds.MS.gene45368.t1;Parent=MS.gene45368.t1 |
| Gene Sequence |
| Protein sequence |
