Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45527.t1 | XP_003597387.1 | 96.7 | 336 | 10 | 1 | 1 | 335 | 1 | 336 | 4.90E-149 | 537.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45527.t1 | Q94DG6 | 53.6 | 278 | 122 | 1 | 65 | 335 | 75 | 352 | 1.1e-77 | 291.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45527.t1 | Q9AWG7 | 96.7 | 336 | 10 | 1 | 1 | 335 | 1 | 336 | 3.6e-149 | 537.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052084 | MS.gene45527 | 0.991052 | 1.20E-185 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45527.t1 | MTR_2g097580 | 97.024 | 336 | 9 | 1 | 1 | 335 | 1 | 336 | 0.0 | 668 |
MS.gene45527.t1 | MTR_3g058630 | 57.980 | 307 | 115 | 5 | 41 | 335 | 45 | 349 | 3.10e-129 | 373 |
MS.gene45527.t1 | MTR_4g083570 | 21.629 | 356 | 250 | 12 | 1 | 334 | 1 | 349 | 4.40e-13 | 69.7 |
MS.gene45527.t1 | MTR_3g081690 | 24.920 | 313 | 194 | 11 | 43 | 320 | 33 | 339 | 6.34e-12 | 66.2 |
MS.gene45527.t1 | MTR_3g081690 | 24.920 | 313 | 194 | 11 | 43 | 320 | 56 | 362 | 8.17e-12 | 65.9 |
MS.gene45527.t1 | MTR_3g082050 | 23.913 | 322 | 209 | 11 | 43 | 334 | 33 | 348 | 1.44e-11 | 65.1 |
MS.gene45527.t1 | MTR_3g082050 | 23.913 | 322 | 209 | 11 | 43 | 334 | 56 | 371 | 1.53e-11 | 65.1 |
MS.gene45527.t1 | MTR_3g082050 | 23.913 | 322 | 209 | 11 | 43 | 334 | 61 | 376 | 1.87e-11 | 65.1 |
MS.gene45527.t1 | MTR_3g081580 | 24.026 | 308 | 200 | 10 | 31 | 310 | 31 | 332 | 2.11e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45527.t1 | AT5G59520 | 58.689 | 351 | 126 | 5 | 3 | 335 | 4 | 353 | 2.22e-133 | 384 |
MS.gene45527.t1 | AT1G55910 | 57.862 | 318 | 108 | 4 | 28 | 335 | 24 | 325 | 7.30e-133 | 381 |
MS.gene45527.t1 | AT2G32270 | 24.633 | 341 | 225 | 12 | 11 | 334 | 13 | 338 | 1.13e-15 | 77.4 |
MS.gene45527.t1 | AT2G04032 | 26.075 | 372 | 229 | 16 | 1 | 334 | 1 | 364 | 7.56e-15 | 75.1 |
MS.gene45527.t1 | AT4G19690 | 22.159 | 352 | 250 | 10 | 1 | 334 | 1 | 346 | 4.13e-14 | 72.8 |
MS.gene45527.t1 | AT4G19680 | 23.269 | 361 | 238 | 11 | 1 | 334 | 1 | 349 | 2.17e-13 | 70.5 |
MS.gene45527.t1 | AT1G31260 | 21.096 | 365 | 255 | 8 | 1 | 334 | 1 | 363 | 4.48e-13 | 69.7 |
MS.gene45527.t1 | AT3G12750 | 22.222 | 351 | 230 | 12 | 12 | 334 | 19 | 354 | 2.18e-11 | 64.7 |
Find 71 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATCCTGCTGTTGTTATTAA+TGG | 0.165665 | 2.1:-6463750 | None:intergenic |
GGCATCGCCGTTGGAATTTC+AGG | 0.231489 | 2.1:+6463035 | MS.gene45527:CDS |
GCCTTCATGTTGGCTTGTTC+TGG | 0.231810 | 2.1:+6462789 | MS.gene45527:CDS |
AATAAGGAACGTTGACTTTA+GGG | 0.232919 | 2.1:-6462457 | None:intergenic |
GTTTGGTCCTTGTTAAAATA+TGG | 0.282576 | 2.1:+6462577 | MS.gene45527:CDS |
AAATAAGGAACGTTGACTTT+AGG | 0.295702 | 2.1:-6462458 | None:intergenic |
TAATTGCAGTTGTCATGATT+TGG | 0.312381 | 2.1:+6464009 | MS.gene45527:CDS |
CCCTTCTGTTGTTGCGTCGA+TGG | 0.338990 | 2.1:-6463823 | None:intergenic |
GTTTCGACACTCCATGGTTT+AGG | 0.340853 | 2.1:+6463958 | MS.gene45527:CDS |
AGCCCAATTGGCGTAGGAAT+TGG | 0.343250 | 2.1:+6463795 | MS.gene45527:CDS |
ATTCCAATTCCTACGCCAAT+TGG | 0.349639 | 2.1:-6463798 | None:intergenic |
AAATTTACGTTCGAGGAGTT+TGG | 0.351394 | 2.1:+6462560 | MS.gene45527:CDS |
TCGTTCCAACGGAAATAATA+AGG | 0.363463 | 2.1:-6462645 | None:intergenic |
GAACGTTGACTTTAGGGCTT+TGG | 0.365709 | 2.1:-6462451 | None:intergenic |
AGACTAAGAGACACAAAATA+AGG | 0.372662 | 2.1:-6462473 | None:intergenic |
CTATTAGGGACACAATTTGC+TGG | 0.389492 | 2.1:+6462678 | MS.gene45527:CDS |
AATTGCAGTTGTCATGATTT+GGG | 0.398612 | 2.1:+6464010 | MS.gene45527:CDS |
ATCAATCATTTAATCTCTAA+AGG | 0.405525 | 2.1:+6463912 | MS.gene45527:CDS |
TTCATGAAGACTACTAATCT+TGG | 0.413670 | 2.1:+6462963 | MS.gene45527:CDS |
TTTGCTATCTCTAGCCCAAT+TGG | 0.420772 | 2.1:+6463783 | MS.gene45527:CDS |
TTCAATTCAATCAAAGCTCA+TGG | 0.442939 | 2.1:+6462501 | MS.gene45527:CDS |
CAAGCCAACATGAAGGCAAA+AGG | 0.443986 | 2.1:-6462783 | None:intergenic |
TTGGATGTATGCAATATCAA+TGG | 0.451469 | 2.1:+6463857 | MS.gene45527:CDS |
CGAACGTAAATTTATGTTGT+CGG | 0.451852 | 2.1:-6462550 | None:intergenic |
CGTTGACTTTAGGGCTTTGG+AGG | 0.455192 | 2.1:-6462448 | None:intergenic |
TGTCTCCTTATTATTTCCGT+TGG | 0.456903 | 2.1:+6462640 | MS.gene45527:CDS |
AAGAAGCATGGAGGAATTTG+TGG | 0.466479 | 2.1:+6463655 | MS.gene45527:CDS |
AGCTTTGATTGAATTGAAGA+AGG | 0.475831 | 2.1:-6462496 | None:intergenic |
TTCCAATTCCTACGCCAATT+GGG | 0.476127 | 2.1:-6463797 | None:intergenic |
GAGAACACCTCAAGAAGAAG+AGG | 0.481872 | 2.1:+6462902 | MS.gene45527:CDS |
ACAACATAAATTTACGTTCG+AGG | 0.488053 | 2.1:+6462553 | MS.gene45527:CDS |
AATTTATGTTGTCGGAGTCA+TGG | 0.509180 | 2.1:-6462542 | None:intergenic |
GATATTTGCTGCAATAGCAA+TGG | 0.517861 | 2.1:+6463695 | MS.gene45527:CDS |
ATATTTGCTGCAATAGCAAT+GGG | 0.519706 | 2.1:+6463696 | MS.gene45527:CDS |
TGGATGTATGCAATATCAAT+GGG | 0.524253 | 2.1:+6463858 | MS.gene45527:CDS |
GTCGTTCCCTCTTCTTCTTG+AGG | 0.530005 | 2.1:-6462909 | None:intergenic |
AAATTAATGATCAGGTACTA+AGG | 0.530087 | 2.1:+6463632 | MS.gene45527:intron |
CAGAAGGGAGAACAGCGGAT+TGG | 0.535719 | 2.1:+6463838 | MS.gene45527:CDS |
AACCATGTTTGGTGATTGTG+TGG | 0.549871 | 2.1:+6462821 | MS.gene45527:CDS |
GCCATCGACGCAACAACAGA+AGG | 0.551024 | 2.1:+6463822 | MS.gene45527:CDS |
GCTAAAGTTGAGGAACTTGA+AGG | 0.551786 | 2.1:+6462876 | MS.gene45527:CDS |
GCTCTCATCCATCGCCAACT+CGG | 0.559618 | 2.1:-6462931 | None:intergenic |
TAAACCATGGAGTGTCGAAA+CGG | 0.560955 | 2.1:-6463956 | None:intergenic |
AAGCCAACATGAAGGCAAAA+GGG | 0.565308 | 2.1:-6462782 | None:intergenic |
GGGAACGACCGAGTTGGCGA+TGG | 0.565946 | 2.1:+6462923 | MS.gene45527:CDS |
CACCACACAATCACCAAACA+TGG | 0.566132 | 2.1:-6462823 | None:intergenic |
AGACCATTAATAACAACAGC+AGG | 0.566425 | 2.1:+6463747 | MS.gene45527:CDS |
CATGTTTGGTGATTGTGTGG+TGG | 0.584077 | 2.1:+6462824 | MS.gene45527:CDS |
AGAGCCGTTTCGACACTCCA+TGG | 0.586693 | 2.1:+6463952 | MS.gene45527:CDS |
TCCAGAACAAGCCAACATGA+AGG | 0.595290 | 2.1:-6462790 | None:intergenic |
AAGTTGAGGAACTTGAAGGA+GGG | 0.602436 | 2.1:+6462880 | MS.gene45527:CDS |
TATGTTGTCGGAGTCATGGT+CGG | 0.603695 | 2.1:-6462538 | None:intergenic |
TTAGGGACACAATTTGCTGG+TGG | 0.603967 | 2.1:+6462681 | MS.gene45527:CDS |
TGTAACAAGTAATAATCAGA+GGG | 0.605818 | 2.1:+6462851 | MS.gene45527:CDS |
AGAAGAGGGAACGACCGAGT+TGG | 0.611188 | 2.1:+6462917 | MS.gene45527:CDS |
AAAGTTGAGGAACTTGAAGG+AGG | 0.613893 | 2.1:+6462879 | MS.gene45527:CDS |
ATGTAACAAGTAATAATCAG+AGG | 0.621888 | 2.1:+6462850 | MS.gene45527:CDS |
AGAACACCTCAAGAAGAAGA+GGG | 0.622606 | 2.1:+6462903 | MS.gene45527:CDS |
ATCTCTAGCCCAATTGGCGT+AGG | 0.622666 | 2.1:+6463789 | MS.gene45527:CDS |
TTATTATTTCCGTTGGAACG+AGG | 0.624370 | 2.1:+6462647 | MS.gene45527:CDS |
CAGGTACTAAGGAAGAAGCA+TGG | 0.640699 | 2.1:+6463643 | MS.gene45527:intron |
CCATCGACGCAACAACAGAA+GGG | 0.642467 | 2.1:+6463823 | MS.gene45527:CDS |
TCAGAGGGAAGCTAAAGTTG+AGG | 0.644763 | 2.1:+6462866 | MS.gene45527:CDS |
TCGAAACGGCTCTTCCTCTG+CGG | 0.648000 | 2.1:-6463942 | None:intergenic |
ATATCAATGGGTATTGCTTG+TGG | 0.657971 | 2.1:+6463870 | MS.gene45527:CDS |
GAAATAACCTGAAATTCCAA+CGG | 0.686017 | 2.1:-6463042 | None:intergenic |
CTAAAGGCTTCAAACCGCAG+AGG | 0.686420 | 2.1:+6463928 | MS.gene45527:CDS |
ACAGCAAGAAACCTAAACCA+TGG | 0.706576 | 2.1:-6463969 | None:intergenic |
AATTCAATCAAAGCTCATGG+AGG | 0.725080 | 2.1:+6462504 | MS.gene45527:CDS |
AACAACAGAAGGGAGAACAG+CGG | 0.747170 | 2.1:+6463833 | MS.gene45527:CDS |
GTACTAAGGAAGAAGCATGG+AGG | 0.765390 | 2.1:+6463646 | MS.gene45527:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATATACAAATTAATGATC+AGG | + | chr2.1:6463624-6463643 | MS.gene45527:intron | 15.0% |
!!! | ATTTTAACTATTCGTATATA+TGG | - | chr2.1:6463298-6463317 | None:intergenic | 15.0% |
!!! | TTTTAACTATTCGTATATAT+GGG | - | chr2.1:6463297-6463316 | None:intergenic | 15.0% |
!! | ATCAATCATTTAATCTCTAA+AGG | + | chr2.1:6463912-6463931 | MS.gene45527:CDS | 20.0% |
!!! | ATATGCATTTTCATATTGAA+AGG | - | chr2.1:6463547-6463566 | None:intergenic | 20.0% |
!!! | ATTTTAAATAGCATCAAAGT+GGG | + | chr2.1:6463397-6463416 | MS.gene45527:intron | 20.0% |
!!! | TATGCATTTTCATATTGAAA+GGG | - | chr2.1:6463546-6463565 | None:intergenic | 20.0% |
!!! | TATTTTAAATAGCATCAAAG+TGG | + | chr2.1:6463396-6463415 | MS.gene45527:intron | 20.0% |
!!! | TGATAGTCTTTTTCTTTTTT+CGG | + | chr2.1:6463093-6463112 | MS.gene45527:intron | 20.0% |
!!! | TGTATATATGATGTGTTTTA+GGG | + | chr2.1:6463424-6463443 | MS.gene45527:intron | 20.0% |
! | AAATTAATGATCAGGTACTA+AGG | + | chr2.1:6463632-6463651 | MS.gene45527:intron | 25.0% |
! | AAGAAAAAGACTATCAAGAA+AGG | - | chr2.1:6463089-6463108 | None:intergenic | 25.0% |
! | ATGTAACAAGTAATAATCAG+AGG | + | chr2.1:6462850-6462869 | MS.gene45527:CDS | 25.0% |
! | GAAAATTTGATCTTCAACAT+TGG | - | chr2.1:6463146-6463165 | None:intergenic | 25.0% |
! | TGTAACAAGTAATAATCAGA+GGG | + | chr2.1:6462851-6462870 | MS.gene45527:CDS | 25.0% |
!! | CTGTATATATGATGTGTTTT+AGG | + | chr2.1:6463423-6463442 | MS.gene45527:intron | 25.0% |
!! | GATAGTCTTTTTCTTTTTTC+GGG | + | chr2.1:6463094-6463113 | MS.gene45527:intron | 25.0% |
!!! | GTTGTTATTAATGGTCTTTT+TGG | - | chr2.1:6463744-6463763 | None:intergenic | 25.0% |
!!! | TCAAACACCATATTTTAACA+AGG | - | chr2.1:6462587-6462606 | None:intergenic | 25.0% |
!!! | TTGTTTGTTTTCACTTTCTT+AGG | + | chr2.1:6462612-6462631 | MS.gene45527:CDS | 25.0% |
AATTGCAGTTGTCATGATTT+GGG | + | chr2.1:6464010-6464029 | MS.gene45527:CDS | 30.0% | |
ACAACATAAATTTACGTTCG+AGG | + | chr2.1:6462553-6462572 | MS.gene45527:CDS | 30.0% | |
AGAAAGGATGAAATAAACGA+TGG | - | chr2.1:6463073-6463092 | None:intergenic | 30.0% | |
AGACTAAGAGACACAAAATA+AGG | - | chr2.1:6462476-6462495 | None:intergenic | 30.0% | |
CGAACGTAAATTTATGTTGT+CGG | - | chr2.1:6462553-6462572 | None:intergenic | 30.0% | |
GAAATAACCTGAAATTCCAA+CGG | - | chr2.1:6463045-6463064 | None:intergenic | 30.0% | |
GTTTGGTCCTTGTTAAAATA+TGG | + | chr2.1:6462577-6462596 | MS.gene45527:CDS | 30.0% | |
TAATTGCAGTTGTCATGATT+TGG | + | chr2.1:6464009-6464028 | MS.gene45527:CDS | 30.0% | |
TGACTGTTATGTTACTGTAT+TGG | + | chr2.1:6463447-6463466 | MS.gene45527:intron | 30.0% | |
TGGATGTATGCAATATCAAT+GGG | + | chr2.1:6463858-6463877 | MS.gene45527:CDS | 30.0% | |
TTATGCATTCTTCTCTTTCT+TGG | + | chr2.1:6463341-6463360 | MS.gene45527:intron | 30.0% | |
TTCAATTCAATCAAAGCTCA+TGG | + | chr2.1:6462501-6462520 | MS.gene45527:CDS | 30.0% | |
TTCATGAAGACTACTAATCT+TGG | + | chr2.1:6462963-6462982 | MS.gene45527:CDS | 30.0% | |
TTGGATGTATGCAATATCAA+TGG | + | chr2.1:6463857-6463876 | MS.gene45527:CDS | 30.0% | |
! | AACGAGGTTTTTCTTCTATT+AGG | + | chr2.1:6462663-6462682 | MS.gene45527:CDS | 30.0% |
! | AAGTTTGGCATGTGATTTTT+AGG | + | chr2.1:6463498-6463517 | MS.gene45527:intron | 30.0% |
! | ACGAGGTTTTTCTTCTATTA+GGG | + | chr2.1:6462664-6462683 | MS.gene45527:CDS | 30.0% |
! | AGCTTTGATTGAATTGAAGA+AGG | - | chr2.1:6462499-6462518 | None:intergenic | 30.0% |
! | AGTGTTAAAGTATCAAACCT+AGG | + | chr2.1:6463117-6463136 | MS.gene45527:intron | 30.0% |
! | ATATTTGCTGCAATAGCAAT+GGG | + | chr2.1:6463696-6463715 | MS.gene45527:CDS | 30.0% |
! | CATTTTCATATTGAAAGGGA+TGG | - | chr2.1:6463542-6463561 | None:intergenic | 30.0% |
! | GGATATCTTTTAACCATGTT+TGG | + | chr2.1:6462810-6462829 | MS.gene45527:CDS | 30.0% |
! | TATCCTGCTGTTGTTATTAA+TGG | - | chr2.1:6463753-6463772 | None:intergenic | 30.0% |
! | TGTTTTCATTCGGTTTTTGA+AGG | + | chr2.1:6463014-6463033 | MS.gene45527:CDS | 30.0% |
!! | AAATAAGGAACGTTGACTTT+AGG | - | chr2.1:6462461-6462480 | None:intergenic | 30.0% |
!! | AATAAGGAACGTTGACTTTA+GGG | - | chr2.1:6462460-6462479 | None:intergenic | 30.0% |
!! | TTTGTTTTCACTTTCTTAGG+TGG | + | chr2.1:6462615-6462634 | MS.gene45527:CDS | 30.0% |
!!! | TCTTGCACTTTGTTTTCATT+CGG | + | chr2.1:6463004-6463023 | MS.gene45527:CDS | 30.0% |
AAATTTACGTTCGAGGAGTT+TGG | + | chr2.1:6462560-6462579 | MS.gene45527:CDS | 35.0% | |
AATTCAATCAAAGCTCATGG+AGG | + | chr2.1:6462504-6462523 | MS.gene45527:CDS | 35.0% | |
AATTTATGTTGTCGGAGTCA+TGG | - | chr2.1:6462545-6462564 | None:intergenic | 35.0% | |
AGACCATTAATAACAACAGC+AGG | + | chr2.1:6463747-6463766 | MS.gene45527:CDS | 35.0% | |
AGACTACCAAGAAATGATGT+TGG | - | chr2.1:6463190-6463209 | None:intergenic | 35.0% | |
TCGTTCCAACGGAAATAATA+AGG | - | chr2.1:6462648-6462667 | None:intergenic | 35.0% | |
TGAAGACCAACATCATTTCT+TGG | + | chr2.1:6463181-6463200 | MS.gene45527:intron | 35.0% | |
TGTCTCCTTATTATTTCCGT+TGG | + | chr2.1:6462640-6462659 | MS.gene45527:CDS | 35.0% | |
TTATTATTTCCGTTGGAACG+AGG | + | chr2.1:6462647-6462666 | MS.gene45527:CDS | 35.0% | |
! | ATATCAATGGGTATTGCTTG+TGG | + | chr2.1:6463870-6463889 | MS.gene45527:CDS | 35.0% |
! | GATATTTGCTGCAATAGCAA+TGG | + | chr2.1:6463695-6463714 | MS.gene45527:CDS | 35.0% |
!! | ATTGAAAGGGATGGACTATA+TGG | - | chr2.1:6463533-6463552 | None:intergenic | 35.0% |
AAAGTTGAGGAACTTGAAGG+AGG | + | chr2.1:6462879-6462898 | MS.gene45527:CDS | 40.0% | |
AAGCCAACATGAAGGCAAAA+GGG | - | chr2.1:6462785-6462804 | None:intergenic | 40.0% | |
AAGTTGAGGAACTTGAAGGA+GGG | + | chr2.1:6462880-6462899 | MS.gene45527:CDS | 40.0% | |
ACAGCAAGAAACCTAAACCA+TGG | - | chr2.1:6463972-6463991 | None:intergenic | 40.0% | |
AGAACACCTCAAGAAGAAGA+GGG | + | chr2.1:6462903-6462922 | MS.gene45527:CDS | 40.0% | |
ATTCCAATTCCTACGCCAAT+TGG | - | chr2.1:6463801-6463820 | None:intergenic | 40.0% | |
CTATTAGGGACACAATTTGC+TGG | + | chr2.1:6462678-6462697 | MS.gene45527:CDS | 40.0% | |
GAAGAAAAACCTCGTTCCAA+CGG | - | chr2.1:6462659-6462678 | None:intergenic | 40.0% | |
GCTAAAGTTGAGGAACTTGA+AGG | + | chr2.1:6462876-6462895 | MS.gene45527:CDS | 40.0% | |
GTGACTTTGCATCTCAAGTT+TGG | + | chr2.1:6463483-6463502 | MS.gene45527:intron | 40.0% | |
TTCCAATTCCTACGCCAATT+GGG | - | chr2.1:6463800-6463819 | None:intergenic | 40.0% | |
! | AACCATGTTTGGTGATTGTG+TGG | + | chr2.1:6462821-6462840 | MS.gene45527:CDS | 40.0% |
! | AAGAAGCATGGAGGAATTTG+TGG | + | chr2.1:6463655-6463674 | MS.gene45527:CDS | 40.0% |
! | ATCTTCAACATTGGTGACCT+AGG | - | chr2.1:6463137-6463156 | None:intergenic | 40.0% |
! | GGCAAAAGGGTAAGTTTTCT+TGG | - | chr2.1:6462772-6462791 | None:intergenic | 40.0% |
! | TTACCCTTTTGCCTTCATGT+TGG | + | chr2.1:6462779-6462798 | MS.gene45527:CDS | 40.0% |
! | TTTGCTATCTCTAGCCCAAT+TGG | + | chr2.1:6463783-6463802 | MS.gene45527:CDS | 40.0% |
! | TTTGCTGGTGGAGTTTTTCT+TGG | + | chr2.1:6462693-6462712 | MS.gene45527:CDS | 40.0% |
!! | AGGTTTCTTGCTGTGCTTTT+TGG | + | chr2.1:6463978-6463997 | MS.gene45527:CDS | 40.0% |
!! | TAAACCATGGAGTGTCGAAA+CGG | - | chr2.1:6463959-6463978 | None:intergenic | 40.0% |
AACAACAGAAGGGAGAACAG+CGG | + | chr2.1:6463833-6463852 | MS.gene45527:CDS | 45.0% | |
CAAGCCAACATGAAGGCAAA+AGG | - | chr2.1:6462786-6462805 | None:intergenic | 45.0% | |
CACCACACAATCACCAAACA+TGG | - | chr2.1:6462826-6462845 | None:intergenic | 45.0% | |
CAGGTACTAAGGAAGAAGCA+TGG | + | chr2.1:6463643-6463662 | MS.gene45527:intron | 45.0% | |
GAGAACACCTCAAGAAGAAG+AGG | + | chr2.1:6462902-6462921 | MS.gene45527:CDS | 45.0% | |
GTTTCGACACTCCATGGTTT+AGG | + | chr2.1:6463958-6463977 | MS.gene45527:CDS | 45.0% | |
TATGTTGTCGGAGTCATGGT+CGG | - | chr2.1:6462541-6462560 | None:intergenic | 45.0% | |
TCAGAGGGAAGCTAAAGTTG+AGG | + | chr2.1:6462866-6462885 | MS.gene45527:CDS | 45.0% | |
TCCAGAACAAGCCAACATGA+AGG | - | chr2.1:6462793-6462812 | None:intergenic | 45.0% | |
! | CATGTTTGGTGATTGTGTGG+TGG | + | chr2.1:6462824-6462843 | MS.gene45527:CDS | 45.0% |
! | GTACTAAGGAAGAAGCATGG+AGG | + | chr2.1:6463646-6463665 | MS.gene45527:CDS | 45.0% |
!! | GAACGTTGACTTTAGGGCTT+TGG | - | chr2.1:6462454-6462473 | None:intergenic | 45.0% |
!! | TTAGGGACACAATTTGCTGG+TGG | + | chr2.1:6462681-6462700 | MS.gene45527:CDS | 45.0% |
AGCCCAATTGGCGTAGGAAT+TGG | + | chr2.1:6463795-6463814 | MS.gene45527:CDS | 50.0% | |
ATCTCTAGCCCAATTGGCGT+AGG | + | chr2.1:6463789-6463808 | MS.gene45527:CDS | 50.0% | |
CCATCGACGCAACAACAGAA+GGG | + | chr2.1:6463823-6463842 | MS.gene45527:CDS | 50.0% | |
CTAAAGGCTTCAAACCGCAG+AGG | + | chr2.1:6463928-6463947 | MS.gene45527:CDS | 50.0% | |
GTCGTTCCCTCTTCTTCTTG+AGG | - | chr2.1:6462912-6462931 | None:intergenic | 50.0% | |
!! | CGTTGACTTTAGGGCTTTGG+AGG | - | chr2.1:6462451-6462470 | None:intergenic | 50.0% |
!! | GCCTTCATGTTGGCTTGTTC+TGG | + | chr2.1:6462789-6462808 | MS.gene45527:CDS | 50.0% |
!!! | GTTTTTGAAGGCATCGCCGT+TGG | + | chr2.1:6463026-6463045 | MS.gene45527:CDS | 50.0% |
AGAAGAGGGAACGACCGAGT+TGG | + | chr2.1:6462917-6462936 | MS.gene45527:CDS | 55.0% | |
AGAGCCGTTTCGACACTCCA+TGG | + | chr2.1:6463952-6463971 | MS.gene45527:CDS | 55.0% | |
CAGAAGGGAGAACAGCGGAT+TGG | + | chr2.1:6463838-6463857 | MS.gene45527:CDS | 55.0% | |
CCCTTCTGTTGTTGCGTCGA+TGG | - | chr2.1:6463826-6463845 | None:intergenic | 55.0% | |
GCCATCGACGCAACAACAGA+AGG | + | chr2.1:6463822-6463841 | MS.gene45527:CDS | 55.0% | |
GCTCTCATCCATCGCCAACT+CGG | - | chr2.1:6462934-6462953 | None:intergenic | 55.0% | |
GGCATCGCCGTTGGAATTTC+AGG | + | chr2.1:6463035-6463054 | MS.gene45527:CDS | 55.0% | |
TCGAAACGGCTCTTCCTCTG+CGG | - | chr2.1:6463945-6463964 | None:intergenic | 55.0% | |
! | GGGAACGACCGAGTTGGCGA+TGG | + | chr2.1:6462923-6462942 | MS.gene45527:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 6462441 | 6464037 | 6462441 | ID=MS.gene45527 |
chr2.1 | mRNA | 6462441 | 6464037 | 6462441 | ID=MS.gene45527.t1;Parent=MS.gene45527 |
chr2.1 | exon | 6462441 | 6463056 | 6462441 | ID=MS.gene45527.t1.exon1;Parent=MS.gene45527.t1 |
chr2.1 | CDS | 6462441 | 6463056 | 6462441 | ID=cds.MS.gene45527.t1;Parent=MS.gene45527.t1 |
chr2.1 | exon | 6463646 | 6464037 | 6463646 | ID=MS.gene45527.t1.exon2;Parent=MS.gene45527.t1 |
chr2.1 | CDS | 6463646 | 6464037 | 6463646 | ID=cds.MS.gene45527.t1;Parent=MS.gene45527.t1 |
Gene Sequence |
Protein sequence |