Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46435.t1 | XP_003590316.1 | 98.8 | 240 | 3 | 0 | 1 | 240 | 1 | 240 | 1.20E-128 | 469.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46435.t1 | B7FHS4 | 98.8 | 240 | 3 | 0 | 1 | 240 | 1 | 240 | 8.5e-129 | 469.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053108 | MS.gene46435 | 0.819194 | 1.32E-52 | -1.69E-46 |
| MS.gene054662 | MS.gene46435 | 0.80555 | 1.26E-49 | -1.69E-46 |
| MS.gene056618 | MS.gene46435 | 0.802266 | 6.09E-49 | -1.69E-46 |
| MS.gene05960 | MS.gene46435 | 0.807113 | 5.92E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46435.t1 | MTR_1g056390 | 98.750 | 240 | 3 | 0 | 1 | 240 | 1 | 240 | 6.58e-177 | 485 |
| MS.gene46435.t1 | MTR_4g068290 | 60.435 | 230 | 81 | 6 | 3 | 232 | 20 | 239 | 6.41e-92 | 270 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46435.t1 | AT3G44150 | 65.844 | 243 | 74 | 3 | 5 | 240 | 6 | 246 | 3.88e-116 | 332 |
| MS.gene46435.t1 | AT3G11800 | 60.569 | 246 | 91 | 4 | 1 | 240 | 1 | 246 | 1.47e-101 | 295 |
| MS.gene46435.t1 | AT2G15910 | 55.556 | 225 | 85 | 4 | 21 | 233 | 142 | 363 | 1.13e-83 | 254 |
| MS.gene46435.t1 | AT3G48630 | 52.381 | 63 | 30 | 0 | 107 | 169 | 2 | 64 | 1.48e-15 | 71.2 |
Find 53 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAGTTGCAAGACCCATTC+AGG | 0.301444 | 1.2:+44427608 | MS.gene46435:CDS |
| GGCTATATGGTTGCATTTGC+TGG | 0.308362 | 1.2:+44427251 | MS.gene46435:CDS |
| TCAAAAGCTGTCTGTCTTAA+CGG | 0.317183 | 1.2:+44427563 | MS.gene46435:CDS |
| AACTTCTCAGATTTGAATAA+AGG | 0.324415 | 1.2:-44427745 | None:intergenic |
| CCAGGACTCATATGGCTATA+TGG | 0.333009 | 1.2:+44427238 | MS.gene46435:intron |
| GCAGGCTGCAAAATTTGTTC+TGG | 0.348048 | 1.2:+44427507 | MS.gene46435:CDS |
| AAACAAAGAGATCTGAGAAT+TGG | 0.348925 | 1.2:-44426017 | None:intergenic |
| GGAACTGTGGATTGCAGCTT+AGG | 0.380580 | 1.2:+44427629 | MS.gene46435:CDS |
| AGAGATCTGAGAATTGGAAT+TGG | 0.391834 | 1.2:-44426011 | None:intergenic |
| ACGTGAATCCGTCGGATCTC+TGG | 0.396037 | 1.2:-44425898 | None:intergenic |
| TCTCCTTACGAGAGTAAAAC+TGG | 0.396842 | 1.2:-44427333 | None:intergenic |
| GATCTCTTTGTTTAGACCTA+AGG | 0.399270 | 1.2:+44426027 | MS.gene46435:CDS |
| GGTATACAATTAGCATTCTC+TGG | 0.422113 | 1.2:+44427650 | MS.gene46435:CDS |
| CGTGATTGCCGCCGTTAGTA+AGG | 0.437429 | 1.2:-44425804 | None:intergenic |
| CGACGGATTCACGTTGGGAT+TGG | 0.441401 | 1.2:+44425907 | MS.gene46435:CDS |
| TGCAATCCACAGTTCCTGAA+TGG | 0.448720 | 1.2:-44427622 | None:intergenic |
| AAAGGCCGTAGAGCGAATAC+TGG | 0.466757 | 1.2:-44427727 | None:intergenic |
| GAATACTTTGTTTGTGTCGC+CGG | 0.468228 | 1.2:-44425852 | None:intergenic |
| GCAGGTTCTTGAATTTAAGA+AGG | 0.472061 | 1.2:+44427484 | MS.gene46435:intron |
| TCGTTGTTCCAGGACTCATA+TGG | 0.473477 | 1.2:+44427230 | MS.gene46435:intron |
| GCAATCCACAGTTCCTGAAT+GGG | 0.474537 | 1.2:-44427621 | None:intergenic |
| TTCTTGAATTTAAGAAGGGC+AGG | 0.475638 | 1.2:+44427489 | MS.gene46435:CDS |
| AGCTGTCTGTCTTAACGGTC+AGG | 0.480537 | 1.2:+44427568 | MS.gene46435:CDS |
| ACCTATCAGCTCTTAACTCT+TGG | 0.485780 | 1.2:+44427684 | MS.gene46435:CDS |
| AGATCCGACGGATTCACGTT+GGG | 0.494461 | 1.2:+44425902 | MS.gene46435:CDS |
| AAAAGAACGAACCGCGACGA+AGG | 0.499053 | 1.2:-44426086 | None:intergenic |
| GGGATTGGCGTTCGCTTCGA+AGG | 0.508869 | 1.2:+44425922 | MS.gene46435:CDS |
| AACGAGATCTCATCGACCTT+AGG | 0.518253 | 1.2:-44426043 | None:intergenic |
| CTTACTAACGGCGGCAATCA+CGG | 0.524762 | 1.2:+44425805 | MS.gene46435:CDS |
| AATTTGTTCTGGAAAAGAGA+TGG | 0.524965 | 1.2:+44427518 | MS.gene46435:CDS |
| ATTTGTTCTGGAAAAGAGAT+GGG | 0.526774 | 1.2:+44427519 | MS.gene46435:CDS |
| GAGCCATTTGCAATAAAAGC+AGG | 0.539452 | 1.2:-44427299 | None:intergenic |
| CAGGTTCTTGAATTTAAGAA+GGG | 0.554852 | 1.2:+44427485 | MS.gene46435:intron |
| ATATGGTTGCATTTGCTGGT+CGG | 0.559957 | 1.2:+44427255 | MS.gene46435:CDS |
| TGGACGCGTGTGTCTGTGCA+AGG | 0.560053 | 1.2:-44425878 | None:intergenic |
| TGGGTCTTGCAACTAGAAGT+TGG | 0.561016 | 1.2:-44427602 | None:intergenic |
| CTTCGCCAGTATTCGCTCTA+CGG | 0.577552 | 1.2:+44427722 | MS.gene46435:CDS |
| ACCAAGAGTTAAGAGCTGAT+AGG | 0.587698 | 1.2:-44427685 | None:intergenic |
| ATTTGCAATAAAAGCAGGAG+GGG | 0.604175 | 1.2:-44427294 | None:intergenic |
| GGCGGTTATCACCTTACTAA+CGG | 0.609250 | 1.2:+44425793 | MS.gene46435:CDS |
| TAGTAAGGTGATAACCGCCA+TGG | 0.618677 | 1.2:-44425789 | None:intergenic |
| CAAGACCCATTCAGGAACTG+TGG | 0.625926 | 1.2:+44427616 | MS.gene46435:CDS |
| CCATTTGCAATAAAAGCAGG+AGG | 0.635505 | 1.2:-44427296 | None:intergenic |
| CGTAGAGCGAATACTGGCGA+AGG | 0.636590 | 1.2:-44427721 | None:intergenic |
| GAGATCCGACGGATTCACGT+TGG | 0.648636 | 1.2:+44425901 | MS.gene46435:CDS |
| TTTCTAGCTTCAGCATACGC+CGG | 0.651746 | 1.2:+44425833 | MS.gene46435:CDS |
| CAATCCCAACGTGAATCCGT+CGG | 0.652871 | 1.2:-44425906 | None:intergenic |
| CATTTGCAATAAAAGCAGGA+GGG | 0.666708 | 1.2:-44427295 | None:intergenic |
| ACACGCGTCCAGAGATCCGA+CGG | 0.668735 | 1.2:+44425890 | MS.gene46435:CDS |
| TAATTCTTCTTCCTTCGTCG+CGG | 0.682591 | 1.2:+44426075 | MS.gene46435:CDS |
| AGCGAGAGTCTAGAATCACA+CGG | 0.714759 | 1.2:-44425986 | None:intergenic |
| ACTAACGGCGGCAATCACGG+CGG | 0.742049 | 1.2:+44425808 | MS.gene46435:CDS |
| GGTTATCACCTTACTAACGG+CGG | 0.765107 | 1.2:+44425796 | MS.gene46435:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGTTATTTAATTGAAAAT+AGG | + | chr1.2:44426818-44426837 | MS.gene46435:intron | 10.0% |
| !! | TTAATAATTGAATTCAATTA+GGG | + | chr1.2:44426159-44426178 | MS.gene46435:intron | 10.0% |
| !! | TTTAATAATTGAATTCAATT+AGG | + | chr1.2:44426158-44426177 | MS.gene46435:intron | 10.0% |
| !!! | CTTTTTTTAGTTTTTAATTT+TGG | + | chr1.2:44426785-44426804 | MS.gene46435:intron | 10.0% |
| !! | TGTAAAATGTTATCAAATAA+TGG | + | chr1.2:44426695-44426714 | MS.gene46435:intron | 15.0% |
| !!! | TAGTTTATTTGATAATTAAC+TGG | + | chr1.2:44426227-44426246 | MS.gene46435:intron | 15.0% |
| !! | AATTGAGTTAGATAAAGATT+CGG | - | chr1.2:44426991-44427010 | None:intergenic | 20.0% |
| !! | TATACAAATATGTACTTCTT+TGG | - | chr1.2:44427085-44427104 | None:intergenic | 20.0% |
| !! | TTAATTGAAAATAGGAGTTA+GGG | + | chr1.2:44426826-44426845 | MS.gene46435:intron | 20.0% |
| !! | TTTAATTGAAAATAGGAGTT+AGG | + | chr1.2:44426825-44426844 | MS.gene46435:intron | 20.0% |
| !!! | ATTGAGAAATTTTTTTAACC+AGG | - | chr1.2:44427365-44427384 | None:intergenic | 20.0% |
| !!! | ATTTACAATACAAGTTTTGT+AGG | + | chr1.2:44426921-44426940 | MS.gene46435:intron | 20.0% |
| ! | AACCCTAATTTATTGTACTT+TGG | + | chr1.2:44426262-44426281 | MS.gene46435:intron | 25.0% |
| ! | AACTTCTCAGATTTGAATAA+AGG | - | chr1.2:44427748-44427767 | None:intergenic | 25.0% |
| ! | ACCCAAAGTACAATAAATTA+GGG | - | chr1.2:44426267-44426286 | None:intergenic | 25.0% |
| ! | ACCCTAATTTATTGTACTTT+GGG | + | chr1.2:44426263-44426282 | MS.gene46435:intron | 25.0% |
| ! | AGTACAATAAATTAGGGTTT+AGG | - | chr1.2:44426261-44426280 | None:intergenic | 25.0% |
| ! | CTAAAAATCAAAGAGAAGAA+AGG | - | chr1.2:44426114-44426133 | None:intergenic | 25.0% |
| ! | TACCCAAAGTACAATAAATT+AGG | - | chr1.2:44426268-44426287 | None:intergenic | 25.0% |
| !! | CTTCTTTGGTTTATAAACTA+AGG | - | chr1.2:44427071-44427090 | None:intergenic | 25.0% |
| !!! | ATCTTTTGATTAGTTTGTGT+GGG | + | chr1.2:44427195-44427214 | MS.gene46435:intron | 25.0% |
| !!! | ATTTTCGGGTATATCATATA+TGG | + | chr1.2:44426388-44426407 | MS.gene46435:intron | 25.0% |
| !!! | GTTTTAATGATGGACATTTT+CGG | + | chr1.2:44426373-44426392 | MS.gene46435:intron | 25.0% |
| !!! | TATCTTTTGATTAGTTTGTG+TGG | + | chr1.2:44427194-44427213 | MS.gene46435:intron | 25.0% |
| !!! | TTTTAATGATGGACATTTTC+GGG | + | chr1.2:44426374-44426393 | MS.gene46435:intron | 25.0% |
| AAAATAGGAGTTAGGGAATT+TGG | + | chr1.2:44426833-44426852 | MS.gene46435:intron | 30.0% | |
| AAACAAAGAGATCTGAGAAT+TGG | - | chr1.2:44426020-44426039 | None:intergenic | 30.0% | |
| AAAGCAAAAATTGACGAAAC+TGG | - | chr1.2:44427168-44427187 | None:intergenic | 30.0% | |
| AGTTTACAACACAAAAACGA+GGG | + | chr1.2:44426879-44426898 | MS.gene46435:intron | 30.0% | |
| ATGATTACAGCTACAACAAA+TGG | - | chr1.2:44427435-44427454 | None:intergenic | 30.0% | |
| ATTATAGCACTATTTCGTAG+AGG | + | chr1.2:44426728-44426747 | MS.gene46435:intron | 30.0% | |
| CAGGTTCTTGAATTTAAGAA+GGG | + | chr1.2:44427485-44427504 | MS.gene46435:intron | 30.0% | |
| CTAATTAACTGCGAAATTTC+CGG | + | chr1.2:44426325-44426344 | MS.gene46435:intron | 30.0% | |
| GTTGTATAATCTAGAAGAAC+TGG | + | chr1.2:44426298-44426317 | MS.gene46435:intron | 30.0% | |
| TAGTTTACAACACAAAAACG+AGG | + | chr1.2:44426878-44426897 | MS.gene46435:intron | 30.0% | |
| TTGACACTTATAAGCAATGA+CGG | + | chr1.2:44426617-44426636 | MS.gene46435:intron | 30.0% | |
| TTGCTTATAAGTGTCAATGT+CGG | - | chr1.2:44426614-44426633 | None:intergenic | 30.0% | |
| TTGTTAAATAGAAGCTAGAG+TGG | + | chr1.2:44426469-44426488 | MS.gene46435:intron | 30.0% | |
| ! | GATCAAAGTCTCTATGTTTT+GGG | + | chr1.2:44426410-44426429 | MS.gene46435:intron | 30.0% |
| !! | AATTTGTTCTGGAAAAGAGA+TGG | + | chr1.2:44427518-44427537 | MS.gene46435:CDS | 30.0% |
| !! | ATTTGTTCTGGAAAAGAGAT+GGG | + | chr1.2:44427519-44427538 | MS.gene46435:CDS | 30.0% |
| AAACCTTTCGTGCTCAATTA+CGG | - | chr1.2:44427111-44427130 | None:intergenic | 35.0% | |
| AGAGATCTGAGAATTGGAAT+TGG | - | chr1.2:44426014-44426033 | None:intergenic | 35.0% | |
| ATTTGCAATAAAAGCAGGAG+GGG | - | chr1.2:44427297-44427316 | None:intergenic | 35.0% | |
| CATTTGCAATAAAAGCAGGA+GGG | - | chr1.2:44427298-44427317 | None:intergenic | 35.0% | |
| GCAGGTTCTTGAATTTAAGA+AGG | + | chr1.2:44427484-44427503 | MS.gene46435:intron | 35.0% | |
| GGTATACAATTAGCATTCTC+TGG | + | chr1.2:44427650-44427669 | MS.gene46435:CDS | 35.0% | |
| TATGAAGCACAAACACTCTT+TGG | + | chr1.2:44426553-44426572 | MS.gene46435:intron | 35.0% | |
| TCAAAAGCTGTCTGTCTTAA+CGG | + | chr1.2:44427563-44427582 | MS.gene46435:CDS | 35.0% | |
| TCCAGTAAAAATGAGGTTTC+CGG | - | chr1.2:44426347-44426366 | None:intergenic | 35.0% | |
| TCTTAAATTCAAGAACCTGC+AGG | - | chr1.2:44427484-44427503 | None:intergenic | 35.0% | |
| TGCAGGAGTAAGATTTCAAA+TGG | - | chr1.2:44427467-44427486 | None:intergenic | 35.0% | |
| TTCTTGAATTTAAGAAGGGC+AGG | + | chr1.2:44427489-44427508 | MS.gene46435:CDS | 35.0% | |
| TTTCCTAGCAAGTGGATAAT+GGG | - | chr1.2:44427041-44427060 | None:intergenic | 35.0% | |
| ! | ATTTGAAATCTTACTCCTGC+AGG | + | chr1.2:44427466-44427485 | MS.gene46435:intron | 35.0% |
| ! | GATCTCTTTGTTTAGACCTA+AGG | + | chr1.2:44426027-44426046 | MS.gene46435:CDS | 35.0% |
| ! | GGATCAAAGTCTCTATGTTT+TGG | + | chr1.2:44426409-44426428 | MS.gene46435:intron | 35.0% |
| !! | TTGCAGATAGTGGATTGTTA+AGG | - | chr1.2:44426756-44426775 | None:intergenic | 35.0% |
| !!! | AGACAGCTTTTGAGTTTTTC+GGG | - | chr1.2:44427556-44427575 | None:intergenic | 35.0% |
| !!! | CAGACAGCTTTTGAGTTTTT+CGG | - | chr1.2:44427557-44427576 | None:intergenic | 35.0% |
| ACCAAGAGTTAAGAGCTGAT+AGG | - | chr1.2:44427688-44427707 | None:intergenic | 40.0% | |
| ACCTATCAGCTCTTAACTCT+TGG | + | chr1.2:44427684-44427703 | MS.gene46435:CDS | 40.0% | |
| ATTCCCATTATCCACTTGCT+AGG | + | chr1.2:44427035-44427054 | MS.gene46435:intron | 40.0% | |
| CAAATTCCACTGTGCTATAG+CGG | - | chr1.2:44426502-44426521 | None:intergenic | 40.0% | |
| CCATTTGCAATAAAAGCAGG+AGG | - | chr1.2:44427299-44427318 | None:intergenic | 40.0% | |
| CTTTCCTAGCAAGTGGATAA+TGG | - | chr1.2:44427042-44427061 | None:intergenic | 40.0% | |
| GAGCCATTTGCAATAAAAGC+AGG | - | chr1.2:44427302-44427321 | None:intergenic | 40.0% | |
| GTGTTGTCAATTGCAGATAG+TGG | - | chr1.2:44426766-44426785 | None:intergenic | 40.0% | |
| TAATTCTTCTTCCTTCGTCG+CGG | + | chr1.2:44426075-44426094 | MS.gene46435:CDS | 40.0% | |
| TCTCCTTACGAGAGTAAAAC+TGG | - | chr1.2:44427336-44427355 | None:intergenic | 40.0% | |
| ! | ATATGGTTGCATTTGCTGGT+CGG | + | chr1.2:44427255-44427274 | MS.gene46435:CDS | 40.0% |
| ! | CATTATCCACTTGCTAGGAA+AGG | + | chr1.2:44427040-44427059 | MS.gene46435:intron | 40.0% |
| ! | GAATACTTTGTTTGTGTCGC+CGG | - | chr1.2:44425855-44425874 | None:intergenic | 40.0% |
| ! | TCTTTGGATTAGACTTGTCC+CGG | + | chr1.2:44426569-44426588 | MS.gene46435:intron | 40.0% |
| ! | TGACCAGTTTTACTCTCGTA+AGG | + | chr1.2:44427330-44427349 | MS.gene46435:intron | 40.0% |
| !! | ACCTCATTTTTACTGGACAC+TGG | + | chr1.2:44426350-44426369 | MS.gene46435:intron | 40.0% |
| !! | CCTCATTTTTACTGGACACT+GGG | + | chr1.2:44426351-44426370 | MS.gene46435:intron | 40.0% |
| !! | CCTCCTGCTTTTATTGCAAA+TGG | + | chr1.2:44427296-44427315 | MS.gene46435:CDS | 40.0% |
| !! | TCCGGAAACCTCATTTTTAC+TGG | + | chr1.2:44426343-44426362 | MS.gene46435:intron | 40.0% |
| !! | TGGACACTGGGTTTTAATGA+TGG | + | chr1.2:44426363-44426382 | MS.gene46435:intron | 40.0% |
| !!! | CTCGTAAGGAGATTTTTTCC+TGG | + | chr1.2:44427344-44427363 | MS.gene46435:intron | 40.0% |
| AACGAGATCTCATCGACCTT+AGG | - | chr1.2:44426046-44426065 | None:intergenic | 45.0% | |
| CCAGGACTCATATGGCTATA+TGG | + | chr1.2:44427238-44427257 | MS.gene46435:intron | 45.0% | |
| CCATATAGCCATATGAGTCC+TGG | - | chr1.2:44427241-44427260 | None:intergenic | 45.0% | |
| CCCAGTGTCCAGTAAAAATG+AGG | - | chr1.2:44426354-44426373 | None:intergenic | 45.0% | |
| CGCTATAGCACAGTGGAATT+TGG | + | chr1.2:44426500-44426519 | MS.gene46435:intron | 45.0% | |
| GCAATCCACAGTTCCTGAAT+GGG | - | chr1.2:44427624-44427643 | None:intergenic | 45.0% | |
| GGCGGTTATCACCTTACTAA+CGG | + | chr1.2:44425793-44425812 | MS.gene46435:CDS | 45.0% | |
| GGCTATATGGTTGCATTTGC+TGG | + | chr1.2:44427251-44427270 | MS.gene46435:CDS | 45.0% | |
| GGTTATCACCTTACTAACGG+CGG | + | chr1.2:44425796-44425815 | MS.gene46435:CDS | 45.0% | |
| GTTCCGTAATTGAGCACGAA+AGG | + | chr1.2:44427105-44427124 | MS.gene46435:intron | 45.0% | |
| TCGTTGTTCCAGGACTCATA+TGG | + | chr1.2:44427230-44427249 | MS.gene46435:intron | 45.0% | |
| TCTAGTTGCAAGACCCATTC+AGG | + | chr1.2:44427608-44427627 | MS.gene46435:CDS | 45.0% | |
| TGCAATCCACAGTTCCTGAA+TGG | - | chr1.2:44427625-44427644 | None:intergenic | 45.0% | |
| TGGGTCTTGCAACTAGAAGT+TGG | - | chr1.2:44427605-44427624 | None:intergenic | 45.0% | |
| ! | AGCGAGAGTCTAGAATCACA+CGG | - | chr1.2:44425989-44426008 | None:intergenic | 45.0% |
| ! | GCAGGCTGCAAAATTTGTTC+TGG | + | chr1.2:44427507-44427526 | MS.gene46435:CDS | 45.0% |
| !! | GCAAGTGGATAATGGGAATG+TGG | - | chr1.2:44427034-44427053 | None:intergenic | 45.0% |
| !! | TTTCTAGCTTCAGCATACGC+CGG | + | chr1.2:44425833-44425852 | MS.gene46435:CDS | 45.0% |
| AAAAGAACGAACCGCGACGA+AGG | - | chr1.2:44426089-44426108 | None:intergenic | 50.0% | |
| AAAGGCCGTAGAGCGAATAC+TGG | - | chr1.2:44427730-44427749 | None:intergenic | 50.0% | |
| AGCTGTCTGTCTTAACGGTC+AGG | + | chr1.2:44427568-44427587 | MS.gene46435:CDS | 50.0% | |
| CAAGACCCATTCAGGAACTG+TGG | + | chr1.2:44427616-44427635 | MS.gene46435:CDS | 50.0% | |
| CAATCCCAACGTGAATCCGT+CGG | - | chr1.2:44425909-44425928 | None:intergenic | 50.0% | |
| CGTCCTATGTAGCACGGATA+CGG | - | chr1.2:44426660-44426679 | None:intergenic | 50.0% | |
| CTTACTAACGGCGGCAATCA+CGG | + | chr1.2:44425805-44425824 | MS.gene46435:CDS | 50.0% | |
| CTTCGCCAGTATTCGCTCTA+CGG | + | chr1.2:44427722-44427741 | MS.gene46435:CDS | 50.0% | |
| GATTAGACTTGTCCCGGTGT+CGG | + | chr1.2:44426575-44426594 | MS.gene46435:intron | 50.0% | |
| GCAATGCCTTTCCTAGCAAG+TGG | - | chr1.2:44427049-44427068 | None:intergenic | 50.0% | |
| GTATCGCGTCCTATGTAGCA+CGG | - | chr1.2:44426666-44426685 | None:intergenic | 50.0% | |
| GTTCTACCGCTATAGCACAG+TGG | + | chr1.2:44426493-44426512 | MS.gene46435:intron | 50.0% | |
| TCGCGTCAGTGTCACAACAA+CGG | - | chr1.2:44426531-44426550 | None:intergenic | 50.0% | |
| TGTCCGTATCCGTGCTACAT+AGG | + | chr1.2:44426654-44426673 | MS.gene46435:intron | 50.0% | |
| TGTGTGTTCGTCGTTGTTCC+AGG | + | chr1.2:44427220-44427239 | MS.gene46435:intron | 50.0% | |
| ! | AGATCCGACGGATTCACGTT+GGG | + | chr1.2:44425902-44425921 | MS.gene46435:CDS | 50.0% |
| ! | GGAACTGTGGATTGCAGCTT+AGG | + | chr1.2:44427629-44427648 | MS.gene46435:CDS | 50.0% |
| ACGTGAATCCGTCGGATCTC+TGG | - | chr1.2:44425901-44425920 | None:intergenic | 55.0% | |
| CGTAGAGCGAATACTGGCGA+AGG | - | chr1.2:44427724-44427743 | None:intergenic | 55.0% | |
| CGTGATTGCCGCCGTTAGTA+AGG | - | chr1.2:44425807-44425826 | None:intergenic | 55.0% | |
| TGTAGCACGGATACGGACAC+CGG | - | chr1.2:44426653-44426672 | None:intergenic | 55.0% | |
| ! | CGACGGATTCACGTTGGGAT+TGG | + | chr1.2:44425907-44425926 | MS.gene46435:CDS | 55.0% |
| ! | GAGATCCGACGGATTCACGT+TGG | + | chr1.2:44425901-44425920 | MS.gene46435:CDS | 55.0% |
| ACACGACACGTGTCCGACAC+CGG | - | chr1.2:44426591-44426610 | None:intergenic | 60.0% | |
| ACACGCGTCCAGAGATCCGA+CGG | + | chr1.2:44425890-44425909 | MS.gene46435:CDS | 60.0% | |
| ACTAACGGCGGCAATCACGG+CGG | + | chr1.2:44425808-44425827 | MS.gene46435:CDS | 60.0% | |
| CAATGACGGCGTGTCGTGTC+CGG | + | chr1.2:44426631-44426650 | MS.gene46435:intron | 60.0% | |
| TGGACGCGTGTGTCTGTGCA+AGG | - | chr1.2:44425881-44425900 | None:intergenic | 60.0% | |
| ! | GGGATTGGCGTTCGCTTCGA+AGG | + | chr1.2:44425922-44425941 | MS.gene46435:CDS | 60.0% |
| CACGACACGTGTCCGACACC+GGG | - | chr1.2:44426590-44426609 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 44425791 | 44427799 | 44425791 | ID=MS.gene46435 |
| chr1.2 | mRNA | 44425791 | 44427799 | 44425791 | ID=MS.gene46435.t1;Parent=MS.gene46435 |
| chr1.2 | exon | 44425791 | 44426096 | 44425791 | ID=MS.gene46435.t1.exon1;Parent=MS.gene46435.t1 |
| chr1.2 | CDS | 44425791 | 44426096 | 44425791 | ID=cds.MS.gene46435.t1;Parent=MS.gene46435.t1 |
| chr1.2 | exon | 44427242 | 44427346 | 44427242 | ID=MS.gene46435.t1.exon2;Parent=MS.gene46435.t1 |
| chr1.2 | CDS | 44427242 | 44427346 | 44427242 | ID=cds.MS.gene46435.t1;Parent=MS.gene46435.t1 |
| chr1.2 | exon | 44427488 | 44427799 | 44427488 | ID=MS.gene46435.t1.exon3;Parent=MS.gene46435.t1 |
| chr1.2 | CDS | 44427488 | 44427799 | 44427488 | ID=cds.MS.gene46435.t1;Parent=MS.gene46435.t1 |
| Gene Sequence |
| Protein sequence |
