Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46476.t1 | RHN79333.1 | 93.1 | 392 | 27 | 0 | 1 | 392 | 1 | 392 | 1.90E-205 | 724.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46476.t1 | A0A396JSN3 | 93.1 | 392 | 27 | 0 | 1 | 392 | 1 | 392 | 1.4e-205 | 724.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050838 | MS.gene46476 | 0.809947 | 1.47E-50 | -1.69E-46 |
| MS.gene053109 | MS.gene46476 | 0.823147 | 1.62E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46476.t1 | MTR_1g054715 | 97.436 | 390 | 10 | 0 | 1 | 390 | 1 | 390 | 0.0 | 786 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46476.t1 | AT3G11950 | 60.000 | 340 | 128 | 3 | 7 | 344 | 1 | 334 | 1.19e-154 | 448 |
| MS.gene46476.t1 | AT3G11950 | 60.000 | 340 | 128 | 3 | 7 | 344 | 1 | 334 | 1.19e-154 | 448 |
| MS.gene46476.t1 | AT3G11950 | 60.000 | 340 | 128 | 3 | 7 | 344 | 1 | 334 | 1.19e-154 | 448 |
| MS.gene46476.t1 | AT3G11950 | 60.000 | 340 | 128 | 3 | 7 | 344 | 1 | 334 | 1.19e-154 | 448 |
| MS.gene46476.t1 | AT3G11950 | 60.000 | 340 | 128 | 3 | 7 | 344 | 1 | 334 | 1.19e-154 | 448 |
Find 71 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTAATGCACTTGCTTAA+AGG | 0.113512 | 1.4:+45169036 | MS.gene46476:CDS |
| TCACATGGAATTATCTTAAA+AGG | 0.281351 | 1.4:-45168853 | None:intergenic |
| AATTTATTGAGTCAGGTTTC+GGG | 0.289208 | 1.4:+45168550 | MS.gene46476:CDS |
| TTCGTCTTTGTTAACAAAAC+TGG | 0.295145 | 1.4:-45168722 | None:intergenic |
| GAATTTATTGAGTCAGGTTT+CGG | 0.295772 | 1.4:+45168549 | MS.gene46476:CDS |
| TGCAAATCACAATGGAATAT+TGG | 0.326816 | 1.4:-45168265 | None:intergenic |
| TAGCCTTATGAGGCGTGATA+TGG | 0.344694 | 1.4:+45168891 | MS.gene46476:CDS |
| TGAAGCTAAGCTAGGGCCTT+TGG | 0.348568 | 1.4:+45172807 | MS.gene46476:CDS |
| TTGTGTGCTGTCCTTTGTTT+CGG | 0.395757 | 1.4:-45172899 | None:intergenic |
| TGTTGCTGAGACTGTTATCT+TGG | 0.399244 | 1.4:+45168444 | MS.gene46476:CDS |
| GTTTAGCGCGGTTCATTTGA+AGG | 0.406768 | 1.4:+45168813 | MS.gene46476:CDS |
| GAAGAGGAATTTATTGAGTC+AGG | 0.419021 | 1.4:+45168543 | MS.gene46476:CDS |
| ATCGGCTATTGCGCAATGTA+TGG | 0.422921 | 1.4:+45168981 | MS.gene46476:CDS |
| AACTGCCCTTTCTATGCTGT+TGG | 0.425142 | 1.4:+45168952 | MS.gene46476:CDS |
| TACAGGCATCAACAAACAAT+AGG | 0.435764 | 1.4:+45172734 | MS.gene46476:intron |
| GCTTGTGTTGATAACACAAC+TGG | 0.444341 | 1.4:+45168343 | MS.gene46476:CDS |
| CTATGCTGTTGGTTGTCGAT+CGG | 0.449296 | 1.4:+45168963 | MS.gene46476:CDS |
| TGTCCATATCACGCCTCATA+AGG | 0.451239 | 1.4:-45168894 | None:intergenic |
| GTTCAGTTGCGGATGGTTTG+AGG | 0.469645 | 1.4:+45168380 | MS.gene46476:CDS |
| ATCTGTGACCTGCGATAATG+AGG | 0.473160 | 1.4:+45168777 | MS.gene46476:CDS |
| CCATTGTGATTTGCATGATA+CGG | 0.475257 | 1.4:+45168273 | MS.gene46476:CDS |
| GTTGGCTCAAATGTTTCTGC+CGG | 0.479339 | 1.4:+45168309 | MS.gene46476:CDS |
| AGGATTGAAAATGAGAAAGA+AGG | 0.492296 | 1.4:+45168238 | MS.gene46476:CDS |
| GTTCAGGAGATGGAAATGAA+TGG | 0.500637 | 1.4:+45168616 | MS.gene46476:CDS |
| AAACTAGAAATAATATCAAA+AGG | 0.501827 | 1.4:-45168499 | None:intergenic |
| AGAGATCTTGAAGCTAAGCT+AGG | 0.503265 | 1.4:+45172799 | MS.gene46476:CDS |
| TCTATGAGATTGACTTCCAA+AGG | 0.522809 | 1.4:-45172823 | None:intergenic |
| AATAATATCAAAAGGATGAT+CGG | 0.523155 | 1.4:-45168491 | None:intergenic |
| GGGCAGTTCACAAGCTTCAT+CGG | 0.528102 | 1.4:-45168937 | None:intergenic |
| CGACAACCAACAGCATAGAA+AGG | 0.528343 | 1.4:-45168958 | None:intergenic |
| AAACCATCCGCAACTGAACC+AGG | 0.528729 | 1.4:-45168376 | None:intergenic |
| TCTGTACACTTCTGCTCACA+TGG | 0.532465 | 1.4:-45168868 | None:intergenic |
| TTGGCTCAAATGTTTCTGCC+GGG | 0.539679 | 1.4:+45168310 | MS.gene46476:CDS |
| GGCATCCACAAGGATGCATC+CGG | 0.542874 | 1.4:+45169057 | MS.gene46476:CDS |
| TTATGAGGCGTGATATGGAC+AGG | 0.553179 | 1.4:+45168896 | MS.gene46476:CDS |
| GACAACCAACAGCATAGAAA+GGG | 0.556536 | 1.4:-45168957 | None:intergenic |
| GCTATTGCGCAATGTATGGT+TGG | 0.558045 | 1.4:+45168985 | MS.gene46476:CDS |
| CAACACACCTGGTTCAGTTG+CGG | 0.561259 | 1.4:+45168369 | MS.gene46476:CDS |
| AAGAGTAGAACAGATTGTAC+AGG | 0.568687 | 1.4:+45169095 | MS.gene46476:CDS |
| GAGACTGTTATCTTGGATGA+TGG | 0.574553 | 1.4:+45168451 | MS.gene46476:CDS |
| TTGGATGATGGTGCGGATGG+TGG | 0.576679 | 1.4:+45168463 | MS.gene46476:CDS |
| AAGGAAGAAACTCACCGACA+TGG | 0.577979 | 1.4:-45167759 | None:intergenic |
| GAAAGATCCACGTCAACGGT+TGG | 0.586244 | 1.4:-45168208 | None:intergenic |
| GGAAGCGCCAACCGTTGACG+TGG | 0.586376 | 1.4:+45168201 | MS.gene46476:CDS |
| ATCTTGGATGATGGTGCGGA+TGG | 0.589438 | 1.4:+45168460 | MS.gene46476:CDS |
| AGTTGCGGATGGTTTGAGGA+AGG | 0.592013 | 1.4:+45168384 | MS.gene46476:CDS |
| ACACCTGGTTCAGTTGCGGA+TGG | 0.596519 | 1.4:+45168373 | MS.gene46476:CDS |
| ATTGCATCCCTCATTATCGC+AGG | 0.597446 | 1.4:-45168785 | None:intergenic |
| TGAAGTTACAATTATCAACA+TGG | 0.598667 | 1.4:-45168753 | None:intergenic |
| CTCCACCGGATGCATCCTTG+TGG | 0.601442 | 1.4:-45169062 | None:intergenic |
| TCTTCGATTAAGATCTCCAC+CGG | 0.603492 | 1.4:-45169076 | None:intergenic |
| ACAACTGGCTTCAACACACC+TGG | 0.605123 | 1.4:+45168358 | MS.gene46476:CDS |
| GAGATCTTGAAGCTAAGCTA+GGG | 0.610250 | 1.4:+45172800 | MS.gene46476:CDS |
| GAAGTTACAATTATCAACAT+GGG | 0.610841 | 1.4:-45168752 | None:intergenic |
| AGGAAGAAACTCACCGACAT+GGG | 0.618238 | 1.4:-45167758 | None:intergenic |
| TACGGAAGTAGTTCACAAGT+TGG | 0.621304 | 1.4:+45168291 | MS.gene46476:CDS |
| AGTGTACAGATAGCCTTATG+AGG | 0.626223 | 1.4:+45168881 | MS.gene46476:CDS |
| TATTGAGTCAGGTTTCGGGA+TGG | 0.626853 | 1.4:+45168554 | MS.gene46476:CDS |
| AGGCGAAAGATCCACGTCAA+CGG | 0.627431 | 1.4:-45168212 | None:intergenic |
| ACACAAGCAGAAGCTAGACC+CGG | 0.634233 | 1.4:-45168328 | None:intergenic |
| TAAAAGGACAATGTGAATCG+TGG | 0.635470 | 1.4:-45168837 | None:intergenic |
| ACGTGGATCTTTCGCCTGCG+AGG | 0.635983 | 1.4:+45168218 | MS.gene46476:CDS |
| ATTGAAAATGAGAAAGAAGG+AGG | 0.639437 | 1.4:+45168241 | MS.gene46476:CDS |
| CCGTATCATGCAAATCACAA+TGG | 0.643884 | 1.4:-45168273 | None:intergenic |
| AGACATAGTCACCGAAACAA+AGG | 0.644703 | 1.4:+45172888 | MS.gene46476:CDS |
| CTTGCTTAAAGGCATCCACA+AGG | 0.652007 | 1.4:+45169047 | MS.gene46476:CDS |
| ATCCACAAGGATGCATCCGG+TGG | 0.656272 | 1.4:+45169060 | MS.gene46476:CDS |
| ATGCAATGCGAGGTTTAGCG+CGG | 0.663261 | 1.4:+45168801 | MS.gene46476:CDS |
| TGTTATCTTGGATGATGGTG+CGG | 0.668976 | 1.4:+45168456 | MS.gene46476:CDS |
| TCTGTGACCTGCGATAATGA+GGG | 0.696713 | 1.4:+45168778 | MS.gene46476:CDS |
| ATAATGAGGGATGCAATGCG+AGG | 0.701753 | 1.4:+45168791 | MS.gene46476:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAGGTA+CGG | + | chr1.4:45169456-45169475 | MS.gene46476:intron | 10.0% |
| !! | AGGTTAAAAAAAAAAAAAAT+TGG | + | chr1.4:45169912-45169931 | MS.gene46476:intron | 10.0% |
| !! | TTCTCAAAAAAAAAAAAAAA+AGG | + | chr1.4:45169451-45169470 | MS.gene46476:intron | 10.0% |
| !!! | AATTCATTTATAATTTGTTT+AGG | - | chr1.4:45170584-45170603 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTTTTTAACCT+TGG | - | chr1.4:45169912-45169931 | None:intergenic | 10.0% |
| !! | AAACTAGAAATAATATCAAA+AGG | - | chr1.4:45168502-45168521 | None:intergenic | 15.0% |
| !! | AATAAATTAGATTTCAAACA+AGG | + | chr1.4:45171904-45171923 | MS.gene46476:intron | 15.0% |
| !! | ATTGATTATTGATAAAACAA+GGG | + | chr1.4:45168108-45168127 | MS.gene46476:intron | 15.0% |
| !!! | AAAAAAAAAAAAAAAGGTAC+GGG | + | chr1.4:45169457-45169476 | MS.gene46476:intron | 15.0% |
| !!! | TATTTATAAAATTTGTTGGT+AGG | + | chr1.4:45168165-45168184 | MS.gene46476:intron | 15.0% |
| !!! | TGTTTTTTTATAAACTCAAA+CGG | - | chr1.4:45169736-45169755 | None:intergenic | 15.0% |
| !!! | TTTGAATTTTGATATTATGT+TGG | - | chr1.4:45171227-45171246 | None:intergenic | 15.0% |
| !! | AAAAAAAAATTGGTACATCA+TGG | + | chr1.4:45169922-45169941 | MS.gene46476:intron | 20.0% |
| !! | AAAAAAAATTGGTACATCAT+GGG | + | chr1.4:45169923-45169942 | MS.gene46476:intron | 20.0% |
| !! | AAAGAAAAAACTGAACTATT+TGG | - | chr1.4:45171695-45171714 | None:intergenic | 20.0% |
| !! | AATAATATCAAAAGGATGAT+CGG | - | chr1.4:45168494-45168513 | None:intergenic | 20.0% |
| !! | ATGTACAACAATATAATTAG+GGG | + | chr1.4:45172065-45172084 | MS.gene46476:intron | 20.0% |
| !! | CATGTACAACAATATAATTA+GGG | + | chr1.4:45172064-45172083 | MS.gene46476:intron | 20.0% |
| !! | CATTAATAACTCTATCTATA+TGG | - | chr1.4:45169135-45169154 | None:intergenic | 20.0% |
| !! | GATACATGTATTATTATGTT+TGG | + | chr1.4:45172432-45172451 | MS.gene46476:intron | 20.0% |
| !! | TAAAACCTTTCATAAGATTT+AGG | - | chr1.4:45171142-45171161 | None:intergenic | 20.0% |
| !! | TCTCCATTTATTATTATGAA+AGG | - | chr1.4:45170845-45170864 | None:intergenic | 20.0% |
| !! | TCTCCTTTCATAATAATAAA+TGG | + | chr1.4:45170839-45170858 | MS.gene46476:intron | 20.0% |
| !! | TGAGAATTAATAGCAATTAT+AGG | - | chr1.4:45169815-45169834 | None:intergenic | 20.0% |
| !! | TTATCAAATTGATACAATCT+AGG | - | chr1.4:45168079-45168098 | None:intergenic | 20.0% |
| !! | TTTCATACTGAATTGTATAT+AGG | + | chr1.4:45172627-45172646 | MS.gene46476:intron | 20.0% |
| !!! | AATTATCAGTTCTTTTCTTT+AGG | - | chr1.4:45171279-45171298 | None:intergenic | 20.0% |
| !!! | ATTTTTTTCTTGAGAAAATG+AGG | - | chr1.4:45169845-45169864 | None:intergenic | 20.0% |
| !!! | CAGTTTTTGTATTTACAAAA+TGG | + | chr1.4:45167924-45167943 | MS.gene46476:intron | 20.0% |
| !!! | CATTGATTATTGATAAAACA+AGG | + | chr1.4:45168107-45168126 | MS.gene46476:intron | 20.0% |
| !!! | CATTTTGTAAATACAAAAAC+TGG | - | chr1.4:45167926-45167945 | None:intergenic | 20.0% |
| !!! | CTTGGTTTTAAAAAAAACAA+GGG | - | chr1.4:45171388-45171407 | None:intergenic | 20.0% |
| !!! | GCTTTTATAGAATATGAAAA+AGG | + | chr1.4:45169575-45169594 | MS.gene46476:intron | 20.0% |
| !!! | GGATTTAATGTTTTGAATTT+TGG | - | chr1.4:45171258-45171277 | None:intergenic | 20.0% |
| !!! | GTAACCTTACATTTTTTTTT+GGG | - | chr1.4:45171946-45171965 | None:intergenic | 20.0% |
| !!! | GTTTTATCAATAATCAATGA+TGG | - | chr1.4:45168106-45168125 | None:intergenic | 20.0% |
| !!! | GTTTTTTCATGAGAATTAAT+AGG | - | chr1.4:45169781-45169800 | None:intergenic | 20.0% |
| !!! | TAAAATAGATGATTTTGTTC+AGG | + | chr1.4:45168600-45168619 | MS.gene46476:CDS | 20.0% |
| !!! | TAAATTTTTAGACACTAATG+AGG | + | chr1.4:45172359-45172378 | MS.gene46476:intron | 20.0% |
| !!! | TAACCTTACATTTTTTTTTG+GGG | - | chr1.4:45171945-45171964 | None:intergenic | 20.0% |
| !!! | TAATTTAAAATAACATGGCA+AGG | + | chr1.4:45169505-45169524 | MS.gene46476:intron | 20.0% |
| !!! | TACAATTTGTTTCATAAATC+TGG | + | chr1.4:45170637-45170656 | MS.gene46476:intron | 20.0% |
| !!! | TATAATTGCTATTAATTCTC+AGG | + | chr1.4:45169814-45169833 | MS.gene46476:intron | 20.0% |
| !!! | TCATTTTCTCAAGAAAAAAA+TGG | + | chr1.4:45169844-45169863 | MS.gene46476:intron | 20.0% |
| !!! | TTTCGTAATGTTTTGAATTT+TGG | - | chr1.4:45171192-45171211 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTAACCTTGGTA+TGG | - | chr1.4:45169907-45169926 | None:intergenic | 20.0% |
| ! | AAACTAAAACATCAACACAA+TGG | - | chr1.4:45170779-45170798 | None:intergenic | 25.0% |
| ! | AGAGAAAACTGAAGTTATTA+GGG | + | chr1.4:45171340-45171359 | MS.gene46476:intron | 25.0% |
| ! | AGATAAGAAGATACAAGAAA+AGG | + | chr1.4:45169599-45169618 | MS.gene46476:intron | 25.0% |
| ! | AGTTATTAATGAATGTGGAT+CGG | + | chr1.4:45169144-45169163 | MS.gene46476:intron | 25.0% |
| ! | ATCACATAAACTATATCACA+TGG | + | chr1.4:45170521-45170540 | MS.gene46476:intron | 25.0% |
| ! | ATGAATTAAAACAAGATTCC+TGG | + | chr1.4:45170597-45170616 | MS.gene46476:intron | 25.0% |
| ! | ATGTGATATAGTTTATGTGA+TGG | - | chr1.4:45170522-45170541 | None:intergenic | 25.0% |
| ! | CCATGTACAACAATATAATT+AGG | + | chr1.4:45172063-45172082 | MS.gene46476:intron | 25.0% |
| ! | CCTAATTATATTGTTGTACA+TGG | - | chr1.4:45172066-45172085 | None:intergenic | 25.0% |
| ! | CTAGCATTTCTTTATATCTT+CGG | + | chr1.4:45167859-45167878 | MS.gene46476:intron | 25.0% |
| ! | GAAGTTACAATTATCAACAT+GGG | - | chr1.4:45168755-45168774 | None:intergenic | 25.0% |
| ! | GATAGAGTTATTAATGAATG+TGG | + | chr1.4:45169139-45169158 | MS.gene46476:intron | 25.0% |
| ! | TATTGACAGATAAGAAAAAG+TGG | + | chr1.4:45169653-45169672 | MS.gene46476:intron | 25.0% |
| ! | TCACATGGAATTATCTTAAA+AGG | - | chr1.4:45168856-45168875 | None:intergenic | 25.0% |
| ! | TCATCATTAATAGGACTAAT+AGG | + | chr1.4:45170314-45170333 | MS.gene46476:intron | 25.0% |
| ! | TCCTAAAAGTTATGAAATAG+CGG | - | chr1.4:45171007-45171026 | None:intergenic | 25.0% |
| ! | TGAAGTTACAATTATCAACA+TGG | - | chr1.4:45168756-45168775 | None:intergenic | 25.0% |
| ! | TGAATTAAAACAAGATTCCT+GGG | + | chr1.4:45170598-45170617 | MS.gene46476:intron | 25.0% |
| ! | TGATTATGACAAGAAAAATC+AGG | - | chr1.4:45172692-45172711 | None:intergenic | 25.0% |
| ! | TGCAGCATTTGTTTATATTT+GGG | + | chr1.4:45172657-45172676 | MS.gene46476:intron | 25.0% |
| ! | TTGCAGCATTTGTTTATATT+TGG | + | chr1.4:45172656-45172675 | MS.gene46476:intron | 25.0% |
| ! | TTGGAAATACACACAAAAAA+AGG | + | chr1.4:45170872-45170891 | MS.gene46476:intron | 25.0% |
| !! | ACATGGTTTTCTACTTTAAA+AGG | + | chr1.4:45170538-45170557 | MS.gene46476:intron | 25.0% |
| !! | ACTATTTTCAGTTTCAAAAG+AGG | + | chr1.4:45170057-45170076 | MS.gene46476:intron | 25.0% |
| !! | ATTCATTAACAATAGTTCTG+AGG | + | chr1.4:45172591-45172610 | MS.gene46476:intron | 25.0% |
| !! | CGAATTATTTGTCTTATTAC+AGG | + | chr1.4:45172717-45172736 | MS.gene46476:intron | 25.0% |
| !! | TACACCATTAGAAGTTTTTA+AGG | + | chr1.4:45169356-45169375 | MS.gene46476:intron | 25.0% |
| !! | TTTTTGTGTGTATTTCCAAA+TGG | - | chr1.4:45170871-45170890 | None:intergenic | 25.0% |
| !!! | AACCTTACATTTTTTTTTGG+GGG | - | chr1.4:45171944-45171963 | None:intergenic | 25.0% |
| !!! | AAGGGTTCATTTTTTAATTG+TGG | + | chr1.4:45170557-45170576 | MS.gene46476:intron | 25.0% |
| !!! | ATTTTAACATGTAGTTCATC+CGG | - | chr1.4:45170702-45170721 | None:intergenic | 25.0% |
| !!! | CATGGTTTTCTACTTTAAAA+GGG | + | chr1.4:45170539-45170558 | MS.gene46476:intron | 25.0% |
| !!! | CATGTTTTTGAAGAATTCTT+TGG | + | chr1.4:45167983-45168002 | MS.gene46476:intron | 25.0% |
| !!! | CCTTGGTTTTAAAAAAAACA+AGG | - | chr1.4:45171389-45171408 | None:intergenic | 25.0% |
| !!! | CCTTGTTTTTTTTAAAACCA+AGG | + | chr1.4:45171386-45171405 | MS.gene46476:intron | 25.0% |
| !!! | GGTAACCTTACATTTTTTTT+TGG | - | chr1.4:45171947-45171966 | None:intergenic | 25.0% |
| !!! | TAGGATTAGTTTGTAGTTTA+TGG | + | chr1.4:45170202-45170221 | MS.gene46476:intron | 25.0% |
| !!! | TTCATTAACAATAGTTCTGA+GGG | + | chr1.4:45172592-45172611 | MS.gene46476:intron | 25.0% |
| AAATTATCCAATCCCAAATC+AGG | + | chr1.4:45170246-45170265 | MS.gene46476:intron | 30.0% | |
| AACCACCTAAATCTTATGAA+AGG | + | chr1.4:45171134-45171153 | MS.gene46476:intron | 30.0% | |
| AACCCCCAAAAAAAAATGTA+AGG | + | chr1.4:45171939-45171958 | MS.gene46476:intron | 30.0% | |
| AACCTTTCATAAGATTTAGG+TGG | - | chr1.4:45171139-45171158 | None:intergenic | 30.0% | |
| AAGAGATAAAGACGCATAAA+AGG | - | chr1.4:45171628-45171647 | None:intergenic | 30.0% | |
| AATAAATGGAGAATGCCATT+TGG | + | chr1.4:45170853-45170872 | MS.gene46476:intron | 30.0% | |
| AATTTATTGAGTCAGGTTTC+GGG | + | chr1.4:45168550-45168569 | MS.gene46476:CDS | 30.0% | |
| AGAAACAATTGCAGAGAAAA+AGG | - | chr1.4:45167789-45167808 | None:intergenic | 30.0% | |
| AGAACGAATAATAACAGATG+TGG | - | chr1.4:45169196-45169215 | None:intergenic | 30.0% | |
| AGGATTGAAAATGAGAAAGA+AGG | + | chr1.4:45168238-45168257 | MS.gene46476:CDS | 30.0% | |
| AGTCATACGCTAATACATAA+AGG | - | chr1.4:45172549-45172568 | None:intergenic | 30.0% | |
| ATACACACAAAAAAAGGATG+TGG | + | chr1.4:45170878-45170897 | MS.gene46476:intron | 30.0% | |
| ATATGAGACTGTAACTAAGA+AGG | + | chr1.4:45171876-45171895 | MS.gene46476:intron | 30.0% | |
| ATCAAGTACTCAATTTCTGT+TGG | + | chr1.4:45172519-45172538 | MS.gene46476:intron | 30.0% | |
| ATTCTATTCGATAAAATCCC+AGG | - | chr1.4:45170618-45170637 | None:intergenic | 30.0% | |
| ATTGAAAATGAGAAAGAAGG+AGG | + | chr1.4:45168241-45168260 | MS.gene46476:CDS | 30.0% | |
| CAAATGGAGAAAGACATAAT+TGG | + | chr1.4:45171648-45171667 | MS.gene46476:intron | 30.0% | |
| CTTCACGTAAAATGAAATAG+CGG | + | chr1.4:45171421-45171440 | MS.gene46476:intron | 30.0% | |
| GAAAAAACTGAACTATTTGG+TGG | - | chr1.4:45171692-45171711 | None:intergenic | 30.0% | |
| GAAAAGAACTGATAATTCCA+AGG | + | chr1.4:45171282-45171301 | MS.gene46476:intron | 30.0% | |
| GAATTTATTGAGTCAGGTTT+CGG | + | chr1.4:45168549-45168568 | MS.gene46476:CDS | 30.0% | |
| GAGAGAAAACTGAAGTTATT+AGG | + | chr1.4:45171339-45171358 | MS.gene46476:intron | 30.0% | |
| GCTAGTATAGAATACGATAA+AGG | + | chr1.4:45169544-45169563 | MS.gene46476:intron | 30.0% | |
| GTATAGAATACGATAAAGGA+AGG | + | chr1.4:45169548-45169567 | MS.gene46476:intron | 30.0% | |
| TACACACAAAAAAAGGATGT+GGG | + | chr1.4:45170879-45170898 | MS.gene46476:intron | 30.0% | |
| TATAGTGGTGAAAAATGTTG+TGG | - | chr1.4:45172132-45172151 | None:intergenic | 30.0% | |
| TATGAGACTGTAACTAAGAA+GGG | + | chr1.4:45171877-45171896 | MS.gene46476:intron | 30.0% | |
| TCAAAAGAGAAGATTTGATC+AGG | - | chr1.4:45171990-45172009 | None:intergenic | 30.0% | |
| TCAATGGCATCATCATTAAT+AGG | + | chr1.4:45170305-45170324 | MS.gene46476:intron | 30.0% | |
| TCATTAATAGGACTAATAGG+AGG | + | chr1.4:45170317-45170336 | MS.gene46476:intron | 30.0% | |
| TCATTATCATACATGCTTTC+TGG | + | chr1.4:45171737-45171756 | MS.gene46476:intron | 30.0% | |
| TCTGTTATTATTCGTTCTAG+CGG | + | chr1.4:45169198-45169217 | MS.gene46476:intron | 30.0% | |
| TGAGCCTTAAAAACTTCTAA+TGG | - | chr1.4:45169363-45169382 | None:intergenic | 30.0% | |
| TGCAAATCACAATGGAATAT+TGG | - | chr1.4:45168268-45168287 | None:intergenic | 30.0% | |
| TTCGTCTTTGTTAACAAAAC+TGG | - | chr1.4:45168725-45168744 | None:intergenic | 30.0% | |
| TTCTTAGTTACAGTCTCATA+TGG | - | chr1.4:45171877-45171896 | None:intergenic | 30.0% | |
| TTGTAATGTACCGTTCAAAA+CGG | - | chr1.4:45167888-45167907 | None:intergenic | 30.0% | |
| TTTATCCTGTCTTTCATCAA+TGG | + | chr1.4:45171847-45171866 | MS.gene46476:intron | 30.0% | |
| TTTATGTGATGGCTAATTCA+AGG | - | chr1.4:45170511-45170530 | None:intergenic | 30.0% | |
| ! | ACAAGATTTCTGCTTTAGAT+TGG | + | chr1.4:45172472-45172491 | MS.gene46476:intron | 30.0% |
| ! | AGATGGAAATGAATGGTTTT+TGG | + | chr1.4:45168623-45168642 | MS.gene46476:CDS | 30.0% |
| ! | ATGAAGAGAGAATATGGTTT+TGG | - | chr1.4:45170286-45170305 | None:intergenic | 30.0% |
| ! | GAAACTGAAAATAGTTTGCA+AGG | - | chr1.4:45170052-45170071 | None:intergenic | 30.0% |
| ! | GATAAAATTTTAAACGCGCA+GGG | - | chr1.4:45169246-45169265 | None:intergenic | 30.0% |
| ! | GGAATTGAAGTATCTTTGAA+AGG | - | chr1.4:45170671-45170690 | None:intergenic | 30.0% |
| ! | GGTAGCTTTTATAGATATCT+AGG | + | chr1.4:45170223-45170242 | MS.gene46476:intron | 30.0% |
| ! | TGATAAAATTTTAAACGCGC+AGG | - | chr1.4:45169247-45169266 | None:intergenic | 30.0% |
| ! | TTTTAACCTTGGTATGGTTA+CGG | - | chr1.4:45169901-45169920 | None:intergenic | 30.0% |
| !! | ACCGCTATTTCATAACTTTT+AGG | + | chr1.4:45171003-45171022 | MS.gene46476:intron | 30.0% |
| !! | CGTAATGTTTTGAATTTTGG+TGG | - | chr1.4:45171189-45171208 | None:intergenic | 30.0% |
| !!! | TACAATTTGTTTTGCTCAAC+AGG | - | chr1.4:45168024-45168043 | None:intergenic | 30.0% |
| AAAACAACTATGCAGTGTTG+CGG | + | chr1.4:45171455-45171474 | MS.gene46476:intron | 35.0% | |
| AAGAGTAGAACAGATTGTAC+AGG | + | chr1.4:45169095-45169114 | MS.gene46476:CDS | 35.0% | |
| AAGATTTGATCAGGCTTCAA+TGG | - | chr1.4:45171981-45172000 | None:intergenic | 35.0% | |
| ACAATTGCAGAGAAAAAGGA+AGG | - | chr1.4:45167785-45167804 | None:intergenic | 35.0% | |
| AGATTTGATCAGGCTTCAAT+GGG | - | chr1.4:45171980-45171999 | None:intergenic | 35.0% | |
| AGCGTTCATTTATGAAGAGA+TGG | - | chr1.4:45172018-45172037 | None:intergenic | 35.0% | |
| ATGAGACTGTAACTAAGAAG+GGG | + | chr1.4:45171878-45171897 | MS.gene46476:intron | 35.0% | |
| ATTATCAACAGTGAATCCAG+GGG | + | chr1.4:45171766-45171785 | MS.gene46476:intron | 35.0% | |
| CAACAACATTTACTAGACTC+TGG | - | chr1.4:45169702-45169721 | None:intergenic | 35.0% | |
| CACTTAATGCACTTGCTTAA+AGG | + | chr1.4:45169036-45169055 | MS.gene46476:CDS | 35.0% | |
| CATTATCAACAGTGAATCCA+GGG | + | chr1.4:45171765-45171784 | MS.gene46476:intron | 35.0% | |
| CCATATTCTCTCTTCATCAA+TGG | + | chr1.4:45170289-45170308 | MS.gene46476:intron | 35.0% | |
| CCATTGATGAAGAGAGAATA+TGG | - | chr1.4:45170292-45170311 | None:intergenic | 35.0% | |
| CTATCCGCTATTAACTACTA+TGG | - | chr1.4:45170927-45170946 | None:intergenic | 35.0% | |
| CTTCCTTCTTTCATTCTCTA+CGG | - | chr1.4:45171320-45171339 | None:intergenic | 35.0% | |
| CTTCTCATCATGCATTATAG+TGG | - | chr1.4:45172147-45172166 | None:intergenic | 35.0% | |
| GAAAACCATTGATGAAAGAC+AGG | - | chr1.4:45171855-45171874 | None:intergenic | 35.0% | |
| GAAGACATCTTACTTGATGT+TGG | - | chr1.4:45170389-45170408 | None:intergenic | 35.0% | |
| GAAGAGGAATTTATTGAGTC+AGG | + | chr1.4:45168543-45168562 | MS.gene46476:CDS | 35.0% | |
| GAATACGATAAAGGAAGGAT+TGG | + | chr1.4:45169553-45169572 | MS.gene46476:intron | 35.0% | |
| GAATGTAAGCAGAAAGATGT+TGG | - | chr1.4:45169317-45169336 | None:intergenic | 35.0% | |
| GAGTCTAGTAAATGTTGTTG+TGG | + | chr1.4:45169702-45169721 | MS.gene46476:intron | 35.0% | |
| GATAATTCCAAGGAGATGAA+AGG | + | chr1.4:45171292-45171311 | MS.gene46476:intron | 35.0% | |
| GATGATGACTATCCTGATTT+GGG | - | chr1.4:45170261-45170280 | None:intergenic | 35.0% | |
| TAAAAGGACAATGTGAATCG+TGG | - | chr1.4:45168840-45168859 | None:intergenic | 35.0% | |
| TACAGGCATCAACAAACAAT+AGG | + | chr1.4:45172734-45172753 | MS.gene46476:intron | 35.0% | |
| TCATTATCAACAGTGAATCC+AGG | + | chr1.4:45171764-45171783 | MS.gene46476:intron | 35.0% | |
| TGAAAAATGTTGTGGAGTTC+AGG | - | chr1.4:45172124-45172143 | None:intergenic | 35.0% | |
| TGAAGATACAAGATTCTCCT+TGG | - | chr1.4:45171406-45171425 | None:intergenic | 35.0% | |
| TGCGTCTTTATCTCTTCAAA+TGG | + | chr1.4:45171632-45171651 | MS.gene46476:intron | 35.0% | |
| TTAAGATGCAGATCCAGAAT+TGG | - | chr1.4:45170745-45170764 | None:intergenic | 35.0% | |
| ! | ACGATTTTGTAGATTCGAAG+AGG | + | chr1.4:45168527-45168546 | MS.gene46476:CDS | 35.0% |
| ! | AGATGATTTTGTTCAGGAGA+TGG | + | chr1.4:45168606-45168625 | MS.gene46476:CDS | 35.0% |
| ! | CCATTGTGATTTGCATGATA+CGG | + | chr1.4:45168273-45168292 | MS.gene46476:CDS | 35.0% |
| ! | TCTATGAGATTGACTTCCAA+AGG | - | chr1.4:45172826-45172845 | None:intergenic | 35.0% |
| ! | TGATGATGACTATCCTGATT+TGG | - | chr1.4:45170262-45170281 | None:intergenic | 35.0% |
| !! | GTTGTTCATCAATTTGTTGC+TGG | + | chr1.4:45172237-45172256 | MS.gene46476:intron | 35.0% |
| !! | TAGTAGTTAATAGCGGATAG+CGG | + | chr1.4:45170927-45170946 | MS.gene46476:intron | 35.0% |
| !! | TTGGTAGGTTTTATCAAGCA+TGG | + | chr1.4:45168180-45168199 | MS.gene46476:intron | 35.0% |
| !!! | ATCCCGCTATAGCATTTTTT+GGG | - | chr1.4:45170967-45170986 | None:intergenic | 35.0% |
| !!! | TATCCCGCTATAGCATTTTT+TGG | - | chr1.4:45170968-45170987 | None:intergenic | 35.0% |
| AACTAATCCTAACTGAGCTC+AGG | - | chr1.4:45170193-45170212 | None:intergenic | 40.0% | |
| AATGTTGTGAATTGCGTGAG+TGG | - | chr1.4:45172098-45172117 | None:intergenic | 40.0% | |
| ACTTCAATTCCACTCACAAC+CGG | + | chr1.4:45170680-45170699 | MS.gene46476:intron | 40.0% | |
| AGACATAGTCACCGAAACAA+AGG | + | chr1.4:45172888-45172907 | MS.gene46476:CDS | 40.0% | |
| AGACCCAGAGTAGTTAATAG+CGG | - | chr1.4:45171580-45171599 | None:intergenic | 40.0% | |
| AGAGATCTTGAAGCTAAGCT+AGG | + | chr1.4:45172799-45172818 | MS.gene46476:CDS | 40.0% | |
| AGGCTGTGGCATATATATTG+TGG | + | chr1.4:45172379-45172398 | MS.gene46476:intron | 40.0% | |
| ATGCAACATGCAATGACCTA+CGG | + | chr1.4:45171819-45171838 | MS.gene46476:intron | 40.0% | |
| CCCACCATAGTAGTTAATAG+CGG | + | chr1.4:45170920-45170939 | MS.gene46476:intron | 40.0% | |
| CCGCTATTAACTACTATGGT+GGG | - | chr1.4:45170923-45170942 | None:intergenic | 40.0% | |
| CCGTATCATGCAAATCACAA+TGG | - | chr1.4:45168276-45168295 | None:intergenic | 40.0% | |
| CGACCCAAAAAATGCTATAG+CGG | + | chr1.4:45170961-45170980 | MS.gene46476:intron | 40.0% | |
| GAAAGGAGATATCCTTACTC+TGG | - | chr1.4:45170828-45170847 | None:intergenic | 40.0% | |
| GACAACCAACAGCATAGAAA+GGG | - | chr1.4:45168960-45168979 | None:intergenic | 40.0% | |
| GACCCAAAAAATGCTATAGC+GGG | + | chr1.4:45170962-45170981 | MS.gene46476:intron | 40.0% | |
| GAGACTGTTATCTTGGATGA+TGG | + | chr1.4:45168451-45168470 | MS.gene46476:CDS | 40.0% | |
| GAGATCTTGAAGCTAAGCTA+GGG | + | chr1.4:45172800-45172819 | MS.gene46476:CDS | 40.0% | |
| GATTTGATCAGGCTTCAATG+GGG | - | chr1.4:45171979-45171998 | None:intergenic | 40.0% | |
| GCAAGATGGGGTTAAAGTAA+AGG | + | chr1.4:45171795-45171814 | MS.gene46476:intron | 40.0% | |
| GGAGAAAGACATAATTGGAG+AGG | + | chr1.4:45171653-45171672 | MS.gene46476:intron | 40.0% | |
| GTAAGCAGAAAGATGTTGGA+TGG | - | chr1.4:45169313-45169332 | None:intergenic | 40.0% | |
| GTGATGGCTAATTCAAGGTT+GGG | - | chr1.4:45170506-45170525 | None:intergenic | 40.0% | |
| GTTCAGGAGATGGAAATGAA+TGG | + | chr1.4:45168616-45168635 | MS.gene46476:CDS | 40.0% | |
| TACGGAAGTAGTTCACAAGT+TGG | + | chr1.4:45168291-45168310 | MS.gene46476:CDS | 40.0% | |
| TAGTGACTAAGACCTCTTGT+GGG | + | chr1.4:45170083-45170102 | MS.gene46476:intron | 40.0% | |
| TCAACCCATTCATCTCAGAA+CGG | + | chr1.4:45170437-45170456 | MS.gene46476:intron | 40.0% | |
| TCAAGGTTGGGCAAAAAAGA+AGG | - | chr1.4:45170494-45170513 | None:intergenic | 40.0% | |
| TCATAAATGAACGCTGTGAC+TGG | + | chr1.4:45172023-45172042 | MS.gene46476:intron | 40.0% | |
| TCCGCTATTAACTACTATGG+TGG | - | chr1.4:45170924-45170943 | None:intergenic | 40.0% | |
| TCTTCGATTAAGATCTCCAC+CGG | - | chr1.4:45169079-45169098 | None:intergenic | 40.0% | |
| TGAGTACTTGATTGAAGCAG+AGG | - | chr1.4:45172511-45172530 | None:intergenic | 40.0% | |
| TGTGATGGCTAATTCAAGGT+TGG | - | chr1.4:45170507-45170526 | None:intergenic | 40.0% | |
| TGTTGCTGAGACTGTTATCT+TGG | + | chr1.4:45168444-45168463 | MS.gene46476:CDS | 40.0% | |
| TTACAGAGTCTATGCCTCTT+CGG | - | chr1.4:45170154-45170173 | None:intergenic | 40.0% | |
| TTAGTGACTAAGACCTCTTG+TGG | + | chr1.4:45170082-45170101 | MS.gene46476:intron | 40.0% | |
| TTGCAGAGAAAAAGGAAGGA+AGG | - | chr1.4:45167781-45167800 | None:intergenic | 40.0% | |
| TTTAGACACTAATGAGGCTG+TGG | + | chr1.4:45172365-45172384 | MS.gene46476:intron | 40.0% | |
| ! | AAAAAAGGTACGGGTACGTT+AGG | + | chr1.4:45169466-45169485 | MS.gene46476:intron | 40.0% |
| ! | TACGGGTACGTTTTGCAAAT+TGG | + | chr1.4:45169996-45170015 | MS.gene46476:intron | 40.0% |
| ! | TGTTATCTTGGATGATGGTG+CGG | + | chr1.4:45168456-45168475 | MS.gene46476:CDS | 40.0% |
| ! | TTCTCATTTTCAATCCTCGC+AGG | - | chr1.4:45168235-45168254 | None:intergenic | 40.0% |
| ! | TTGTGTGCTGTCCTTTGTTT+CGG | - | chr1.4:45172902-45172921 | None:intergenic | 40.0% |
| !! | AAGATCCGTTCTGAGATGAA+TGG | - | chr1.4:45170445-45170464 | None:intergenic | 40.0% |
| !! | AGATCCGTTCTGAGATGAAT+GGG | - | chr1.4:45170444-45170463 | None:intergenic | 40.0% |
| !! | AGTGTACAGATAGCCTTATG+AGG | + | chr1.4:45168881-45168900 | MS.gene46476:CDS | 40.0% |
| !! | ATTTGACAACCTCTGAAGCA+CGG | - | chr1.4:45170027-45170046 | None:intergenic | 40.0% |
| !! | GCTTGTGTTGATAACACAAC+TGG | + | chr1.4:45168343-45168362 | MS.gene46476:CDS | 40.0% |
| !! | TAGTGTTGTTGGTGACAGTT+TGG | - | chr1.4:45170348-45170367 | None:intergenic | 40.0% |
| !! | TCTTCGGATTCCGTTTTGAA+CGG | + | chr1.4:45167875-45167894 | MS.gene46476:intron | 40.0% |
| !! | TGAATGGGTTGAGAATGTAG+AGG | - | chr1.4:45170429-45170448 | None:intergenic | 40.0% |
| !! | TGACTATCCTGATTTGGGAT+TGG | - | chr1.4:45170256-45170275 | None:intergenic | 40.0% |
| AACTGCCCTTTCTATGCTGT+TGG | + | chr1.4:45168952-45168971 | MS.gene46476:CDS | 45.0% | |
| ACCAACAACACTAACACCAG+GGG | + | chr1.4:45170355-45170374 | MS.gene46476:intron | 45.0% | |
| ACCATACCGTAACCATACCA+AGG | + | chr1.4:45169892-45169911 | MS.gene46476:intron | 45.0% | |
| ACCTTGGTATGGTTACGGTA+TGG | - | chr1.4:45169896-45169915 | None:intergenic | 45.0% | |
| ACTATATGTCCAGCTTTGCC+AGG | - | chr1.4:45170131-45170150 | None:intergenic | 45.0% | |
| AGGAGATATCCTTACTCTGG+TGG | - | chr1.4:45170825-45170844 | None:intergenic | 45.0% | |
| AGTGACTAAGACCTCTTGTG+GGG | + | chr1.4:45170084-45170103 | MS.gene46476:intron | 45.0% | |
| AGTTAATAGCGGCGCTATAG+CGG | - | chr1.4:45171569-45171588 | None:intergenic | 45.0% | |
| AGTTGTCAACTGTGTTGCAC+GGG | + | chr1.4:45169407-45169426 | MS.gene46476:intron | 45.0% | |
| ATAATGAGGGATGCAATGCG+AGG | + | chr1.4:45168791-45168810 | MS.gene46476:CDS | 45.0% | |
| ATCGGCTATTGCGCAATGTA+TGG | + | chr1.4:45168981-45169000 | MS.gene46476:CDS | 45.0% | |
| ATCTGTGACCTGCGATAATG+AGG | + | chr1.4:45168777-45168796 | MS.gene46476:CDS | 45.0% | |
| ATGCAGATCCAGAATTGGAG+TGG | - | chr1.4:45170740-45170759 | None:intergenic | 45.0% | |
| ATTGCATCCCTCATTATCGC+AGG | - | chr1.4:45168788-45168807 | None:intergenic | 45.0% | |
| CACCAACAACACTAACACCA+GGG | + | chr1.4:45170354-45170373 | MS.gene46476:intron | 45.0% | |
| CGACAACCAACAGCATAGAA+AGG | - | chr1.4:45168961-45168980 | None:intergenic | 45.0% | |
| GAGGCATAGACTCTGTAAGA+CGG | + | chr1.4:45170156-45170175 | MS.gene46476:intron | 45.0% | |
| GAGTTGTCAACTGTGTTGCA+CGG | + | chr1.4:45169406-45169425 | MS.gene46476:intron | 45.0% | |
| GCTATTGCGCAATGTATGGT+TGG | + | chr1.4:45168985-45169004 | MS.gene46476:CDS | 45.0% | |
| GGGCAAAAAAGAAGGAAGCT+AGG | - | chr1.4:45170486-45170505 | None:intergenic | 45.0% | |
| GTTTAGCGCGGTTCATTTGA+AGG | + | chr1.4:45168813-45168832 | MS.gene46476:CDS | 45.0% | |
| TATCTCATAACGCTACGCCA+TGG | + | chr1.4:45171493-45171512 | MS.gene46476:intron | 45.0% | |
| TATTGAGTCAGGTTTCGGGA+TGG | + | chr1.4:45168554-45168573 | MS.gene46476:CDS | 45.0% | |
| TCACCAACAACACTAACACC+AGG | + | chr1.4:45170353-45170372 | MS.gene46476:intron | 45.0% | |
| TCTGTACACTTCTGCTCACA+TGG | - | chr1.4:45168871-45168890 | None:intergenic | 45.0% | |
| TCTGTGACCTGCGATAATGA+GGG | + | chr1.4:45168778-45168797 | MS.gene46476:CDS | 45.0% | |
| TGCTGGATTGACATGCATTC+TGG | + | chr1.4:45172254-45172273 | MS.gene46476:intron | 45.0% | |
| TGTCCATATCACGCCTCATA+AGG | - | chr1.4:45168897-45168916 | None:intergenic | 45.0% | |
| TTATGAGGCGTGATATGGAC+AGG | + | chr1.4:45168896-45168915 | MS.gene46476:CDS | 45.0% | |
| TTGGTATGGTTACGGTATGG+TGG | - | chr1.4:45169893-45169912 | None:intergenic | 45.0% | |
| TTTGCAAAACGTACCCGTAC+CGG | - | chr1.4:45169995-45170014 | None:intergenic | 45.0% | |
| ! | CTATGCTGTTGGTTGTCGAT+CGG | + | chr1.4:45168963-45168982 | MS.gene46476:CDS | 45.0% |
| ! | GTTGGCTCAAATGTTTCTGC+CGG | + | chr1.4:45168309-45168328 | MS.gene46476:CDS | 45.0% |
| ! | TTGGCTCAAATGTTTCTGCC+GGG | + | chr1.4:45168310-45168329 | MS.gene46476:CDS | 45.0% |
| !! | CTTGCTTAAAGGCATCCACA+AGG | + | chr1.4:45169047-45169066 | MS.gene46476:CDS | 45.0% |
| !! | GCATTCTGGAGTTCATACAC+TGG | + | chr1.4:45172268-45172287 | MS.gene46476:intron | 45.0% |
| !! | TAGCCTTATGAGGCGTGATA+TGG | + | chr1.4:45168891-45168910 | MS.gene46476:CDS | 45.0% |
| !! | TTTGACAACCTCTGAAGCAC+GGG | - | chr1.4:45170026-45170045 | None:intergenic | 45.0% |
| !! | TAAAAAAAAATAATTAATGA+TGG | - | chr1.4:45171605-45171624 | None:intergenic | 5.0% |
| !!! | TTTTTATTTATAAAATTTGT+TGG | + | chr1.4:45168161-45168180 | MS.gene46476:intron | 5.0% |
| !!! | TTTTTTAATTTAAAATAACA+TGG | + | chr1.4:45169500-45169519 | MS.gene46476:intron | 5.0% |
| AAACCATCCGCAACTGAACC+AGG | - | chr1.4:45168379-45168398 | None:intergenic | 50.0% | |
| ACACAAGCAGAAGCTAGACC+CGG | - | chr1.4:45168331-45168350 | None:intergenic | 50.0% | |
| ACTTGAGCCTGAGCTCAGTT+AGG | + | chr1.4:45170183-45170202 | MS.gene46476:intron | 50.0% | |
| AGCGCCGCTATTAACTACTC+TGG | + | chr1.4:45171573-45171592 | MS.gene46476:intron | 50.0% | |
| AGGCGAAAGATCCACGTCAA+CGG | - | chr1.4:45168215-45168234 | None:intergenic | 50.0% | |
| AGTTGCGGATGGTTTGAGGA+AGG | + | chr1.4:45168384-45168403 | MS.gene46476:CDS | 50.0% | |
| ATGCAATGCGAGGTTTAGCG+CGG | + | chr1.4:45168801-45168820 | MS.gene46476:CDS | 50.0% | |
| ATGTGGGTCCTACCATTGAG+TGG | + | chr1.4:45170895-45170914 | MS.gene46476:intron | 50.0% | |
| CAACACACCTGGTTCAGTTG+CGG | + | chr1.4:45168369-45168388 | MS.gene46476:CDS | 50.0% | |
| CACGTGAACCACTCCAATTC+TGG | + | chr1.4:45170729-45170748 | MS.gene46476:intron | 50.0% | |
| CATACGAGTACCAGTACCTG+CGG | + | chr1.4:45169964-45169983 | MS.gene46476:intron | 50.0% | |
| CGCCATGGCTTATTGCATAG+CGG | + | chr1.4:45171508-45171527 | MS.gene46476:intron | 50.0% | |
| GAAAGATCCACGTCAACGGT+TGG | - | chr1.4:45168211-45168230 | None:intergenic | 50.0% | |
| GAAATAGCGGTCATAGCGCT+AGG | - | chr1.4:45170994-45171013 | None:intergenic | 50.0% | |
| GACCGCTATGCAATAAGCCA+TGG | - | chr1.4:45171513-45171532 | None:intergenic | 50.0% | |
| GCGCCGCTATTAACTACTCT+GGG | + | chr1.4:45171574-45171593 | MS.gene46476:intron | 50.0% | |
| GCGCCGTAGAGAATGAAAGA+AGG | + | chr1.4:45171314-45171333 | MS.gene46476:intron | 50.0% | |
| GCTGGACATATAGTCCGAAG+AGG | + | chr1.4:45170137-45170156 | MS.gene46476:intron | 50.0% | |
| GCTTCAATGGGGTCGATAGA+CGG | - | chr1.4:45171968-45171987 | None:intergenic | 50.0% | |
| GGCGTAGCGTTATGAGATAG+CGG | - | chr1.4:45171492-45171511 | None:intergenic | 50.0% | |
| GGGCAGTTCACAAGCTTCAT+CGG | - | chr1.4:45168940-45168959 | None:intergenic | 50.0% | |
| GGTCAAATTCCTGGCAAAGC+TGG | + | chr1.4:45170119-45170138 | MS.gene46476:intron | 50.0% | |
| GTAGTTCATCCGGTTGTGAG+TGG | - | chr1.4:45170692-45170711 | None:intergenic | 50.0% | |
| GTATGGTTACGGTATGGTGG+TGG | - | chr1.4:45169890-45169909 | None:intergenic | 50.0% | |
| GTTCAGTTGCGGATGGTTTG+AGG | + | chr1.4:45168380-45168399 | MS.gene46476:CDS | 50.0% | |
| TAACTGAGCTCAGGCTCAAG+TGG | - | chr1.4:45170184-45170203 | None:intergenic | 50.0% | |
| TAAGACCTCTTGTGGGGATG+TGG | + | chr1.4:45170090-45170109 | MS.gene46476:intron | 50.0% | |
| TGAAGCTAAGCTAGGGCCTT+TGG | + | chr1.4:45172807-45172826 | MS.gene46476:CDS | 50.0% | |
| TGGCTTATTGCATAGCGGTC+CGG | + | chr1.4:45171513-45171532 | MS.gene46476:intron | 50.0% | |
| TGTGGGTCCTACCATTGAGT+GGG | + | chr1.4:45170896-45170915 | MS.gene46476:intron | 50.0% | |
| TTGCAAAACGTACCCGTACC+GGG | - | chr1.4:45169994-45170013 | None:intergenic | 50.0% | |
| ! | ACAACTGGCTTCAACACACC+TGG | + | chr1.4:45168358-45168377 | MS.gene46476:CDS | 50.0% |
| ! | ATCTTGGATGATGGTGCGGA+TGG | + | chr1.4:45168460-45168479 | MS.gene46476:CDS | 50.0% |
| ! | ATGAGATAGCGGCGCTATAG+CGG | - | chr1.4:45171481-45171500 | None:intergenic | 50.0% |
| ! | CAGGGGCATAATGCAAGATG+GGG | + | chr1.4:45171783-45171802 | MS.gene46476:intron | 50.0% |
| ! | CCAGGGGCATAATGCAAGAT+GGG | + | chr1.4:45171782-45171801 | MS.gene46476:intron | 50.0% |
| ! | TCCAGGGGCATAATGCAAGA+TGG | + | chr1.4:45171781-45171800 | MS.gene46476:intron | 50.0% |
| !! | GTATGGTGGTGGTACTCTCA+GGG | - | chr1.4:45169879-45169898 | None:intergenic | 50.0% |
| !! | TGGAGGGTTGGTCAAATTCC+TGG | + | chr1.4:45170110-45170129 | MS.gene46476:intron | 50.0% |
| ACACCTGGTTCAGTTGCGGA+TGG | + | chr1.4:45168373-45168392 | MS.gene46476:CDS | 55.0% | |
| ACCTCTTGTGGGGATGTGGA+GGG | + | chr1.4:45170094-45170113 | MS.gene46476:intron | 55.0% | |
| ATCCACAAGGATGCATCCGG+TGG | + | chr1.4:45169060-45169079 | MS.gene46476:CDS | 55.0% | |
| CCCATCTTGCATTATGCCCC+TGG | - | chr1.4:45171785-45171804 | None:intergenic | 55.0% | |
| GACAGGATAAACAGCGCCGT+AGG | - | chr1.4:45171838-45171857 | None:intergenic | 55.0% | |
| GATGTTGGAGAAGATGCCCC+TGG | - | chr1.4:45170374-45170393 | None:intergenic | 55.0% | |
| GCAAGCTGACCACCAGAGTA+AGG | + | chr1.4:45170813-45170832 | MS.gene46476:intron | 55.0% | |
| GGCATCCACAAGGATGCATC+CGG | + | chr1.4:45169057-45169076 | MS.gene46476:CDS | 55.0% | |
| TACGGCGCCTTTCATCTCCT+TGG | - | chr1.4:45171302-45171321 | None:intergenic | 55.0% | |
| TCAACTGTGTTGCACGGGTG+CGG | + | chr1.4:45169412-45169431 | MS.gene46476:intron | 55.0% | |
| ! | CTATGGTGGGACCCACTCAA+TGG | - | chr1.4:45170910-45170929 | None:intergenic | 55.0% |
| ! | GCCCCTGGTGTTAGTGTTGT+TGG | - | chr1.4:45170359-45170378 | None:intergenic | 55.0% |
| ! | TTGGAGTACCCGTGCTTCAG+AGG | + | chr1.4:45170015-45170034 | MS.gene46476:intron | 55.0% |
| ! | TTGGATGATGGTGCGGATGG+TGG | + | chr1.4:45168463-45168482 | MS.gene46476:CDS | 55.0% |
| !! | CGCAGGTACTGGTACTCGTA+TGG | - | chr1.4:45169966-45169985 | None:intergenic | 55.0% |
| !! | GGTATGGTGGTGGTACTCTC+AGG | - | chr1.4:45169880-45169899 | None:intergenic | 55.0% |
| ACCCTCCACATCCCCACAAG+AGG | - | chr1.4:45170098-45170117 | None:intergenic | 60.0% | |
| ACGTGGATCTTTCGCCTGCG+AGG | + | chr1.4:45168218-45168237 | MS.gene46476:CDS | 60.0% | |
| CAACTGTGTTGCACGGGTGC+GGG | + | chr1.4:45169413-45169432 | MS.gene46476:intron | 60.0% | |
| CTCCACCGGATGCATCCTTG+TGG | - | chr1.4:45169065-45169084 | None:intergenic | 60.0% | |
| CTTGTGGGGATGTGGAGGGT+TGG | + | chr1.4:45170098-45170117 | MS.gene46476:intron | 60.0% | |
| GACCTCTTGTGGGGATGTGG+AGG | + | chr1.4:45170093-45170112 | MS.gene46476:intron | 60.0% | |
| GGCGCTATAGCGGCCAATAG+CGG | - | chr1.4:45171559-45171578 | None:intergenic | 60.0% | |
| GGTGGGACCCACTCAATGGT+AGG | - | chr1.4:45170906-45170925 | None:intergenic | 60.0% | |
| ! | ACCAGTACCTGCGGAGTACC+CGG | + | chr1.4:45169973-45169992 | MS.gene46476:intron | 60.0% |
| ! | TACCTGCGGAGTACCCGGTA+CGG | + | chr1.4:45169978-45169997 | MS.gene46476:intron | 60.0% |
| ACCGGGTACTCCGCAGGTAC+TGG | - | chr1.4:45169977-45169996 | None:intergenic | 65.0% | |
| ACGGGTGCGGGTACGGGATA+CGG | + | chr1.4:45169425-45169444 | MS.gene46476:intron | 65.0% | |
| GTGTTGCACGGGTGCGGGTA+CGG | + | chr1.4:45169418-45169437 | MS.gene46476:intron | 65.0% | |
| TGTTGCACGGGTGCGGGTAC+GGG | + | chr1.4:45169419-45169438 | MS.gene46476:intron | 65.0% | |
| ! | ACCTGCGGAGTACCCGGTAC+GGG | + | chr1.4:45169979-45169998 | MS.gene46476:intron | 65.0% |
| ! | TAGCGGATAGCGGCGCGTAG+CGG | + | chr1.4:45170937-45170956 | MS.gene46476:intron | 65.0% |
| !! | GGAAGCGCCAACCGTTGACG+TGG | + | chr1.4:45168201-45168220 | MS.gene46476:CDS | 65.0% |
| ACCCGTACCGGGTACTCCGC+AGG | - | chr1.4:45169983-45170002 | None:intergenic | 70.0% | |
| AGCGGCCAATAGCGGCCGCG+CGG | - | chr1.4:45171551-45171570 | None:intergenic | 75.0% | |
| CCAATAGCGGCCGCGCGGTG+CGG | - | chr1.4:45171546-45171565 | None:intergenic | 75.0% | |
| ! | CCGCACCGCGCGGCCGCTAT+TGG | + | chr1.4:45171543-45171562 | MS.gene46476:intron | 80.0% |
| ! | CGCGCGGTGCGGTGCGGTAC+CGG | - | chr1.4:45171535-45171554 | None:intergenic | 80.0% |
| ! | CGGTACCGCACCGCACCGCG+CGG | + | chr1.4:45171533-45171552 | MS.gene46476:intron | 80.0% |
| ! | AGCGGCCGCGCGGTGCGGTG+CGG | - | chr1.4:45171541-45171560 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 45167761 | 45172981 | 45167761 | ID=MS.gene46476 |
| chr1.4 | mRNA | 45167761 | 45172981 | 45167761 | ID=MS.gene46476.t1;Parent=MS.gene46476 |
| chr1.4 | exon | 45167761 | 45167766 | 45167761 | ID=MS.gene46476.t1.exon1;Parent=MS.gene46476.t1 |
| chr1.4 | CDS | 45167761 | 45167766 | 45167761 | ID=cds.MS.gene46476.t1;Parent=MS.gene46476.t1 |
| chr1.4 | exon | 45168187 | 45169116 | 45168187 | ID=MS.gene46476.t1.exon2;Parent=MS.gene46476.t1 |
| chr1.4 | CDS | 45168187 | 45169116 | 45168187 | ID=cds.MS.gene46476.t1;Parent=MS.gene46476.t1 |
| chr1.4 | exon | 45172739 | 45172981 | 45172739 | ID=MS.gene46476.t1.exon3;Parent=MS.gene46476.t1 |
| chr1.4 | CDS | 45172739 | 45172981 | 45172739 | ID=cds.MS.gene46476.t1;Parent=MS.gene46476.t1 |
| Gene Sequence |
| Protein sequence |
