Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47002.t1 | XP_003617203.2 | 99 | 1465 | 14 | 0 | 1 | 1465 | 342 | 1806 | 0.00E+00 | 2756.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47002.t1 | Q6PDI5 | 29.3 | 1342 | 833 | 25 | 3 | 1274 | 362 | 1657 | 1.0e-151 | 539.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47002.t1 | G7KCU1 | 99.0 | 1465 | 14 | 0 | 1 | 1465 | 342 | 1806 | 0.0e+00 | 2756.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049209 | MS.gene47002 | 0.802202 | 6.27E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 274 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAAACTGTAAGAATTTC+TGG | 0.094881 | 5.2:+75538518 | MS.gene47002:CDS |
| AGACTTAATCTATAAGTTTA+TGG | 0.146073 | 5.2:+75536669 | MS.gene47002:CDS |
| TCTAAAGCATTACTTATAAT+TGG | 0.146338 | 5.2:+75531295 | MS.gene47002:CDS |
| CAGTATCTTCAATAAGTTTC+TGG | 0.149049 | 5.2:-75541904 | None:intergenic |
| AAATTCAAAACCTGAATTTC+TGG | 0.157705 | 5.2:-75534458 | None:intergenic |
| CCGGCAACAGCCAAAGTTAT+TGG | 0.209560 | 5.2:+75531060 | MS.gene47002:CDS |
| TCCTATTACCTGAACATAAA+TGG | 0.213088 | 5.2:+75546678 | MS.gene47002:CDS |
| AATTGAGCCCCTGGTCTTCT+AGG | 0.223991 | 5.2:-75539865 | None:intergenic |
| TTCAAATTGGCTAGAAATAT+TGG | 0.224785 | 5.2:-75542975 | None:intergenic |
| CATCAGCAGAAATAGCTTTA+TGG | 0.226203 | 5.2:-75543491 | None:intergenic |
| GAAAATGCTTCCAGAAATTC+AGG | 0.235522 | 5.2:+75534448 | MS.gene47002:CDS |
| AAGGCTGAAAATCAAATTTA+AGG | 0.239272 | 5.2:-75533627 | None:intergenic |
| ATTAACGCATGTTCTTAATA+AGG | 0.240435 | 5.2:-75547938 | None:intergenic |
| TCCATTTATGTTCAGGTAAT+AGG | 0.242948 | 5.2:-75546679 | None:intergenic |
| AATCGATCAGCTTAAGTTAA+TGG | 0.243104 | 5.2:+75524405 | MS.gene47002:CDS |
| CCATCAAAGAACTTTGTTCT+AGG | 0.243912 | 5.2:+75546808 | MS.gene47002:CDS |
| CCACTTGATGATTCTAATTC+AGG | 0.245728 | 5.2:+75533373 | MS.gene47002:CDS |
| GAGGCTTTCTCTCACCTTCT+TGG | 0.246148 | 5.2:+75536269 | MS.gene47002:CDS |
| AAGCAACAAGGAAATGAAAT+TGG | 0.256076 | 5.2:-75541732 | None:intergenic |
| ATTAGCAGTGTTACAAGATT+TGG | 0.261234 | 5.2:+75528342 | MS.gene47002:CDS |
| CAATCCAGAGTTCTTTAATA+TGG | 0.267291 | 5.2:+75544691 | MS.gene47002:CDS |
| TCGTGCCATGGATGACATTA+AGG | 0.271946 | 5.2:+75538499 | MS.gene47002:CDS |
| ATCCAACATCATACCAAGTT+TGG | 0.272517 | 5.2:-75531029 | None:intergenic |
| CTATGTTCACTTTGTCCATT+AGG | 0.273011 | 5.2:-75534278 | None:intergenic |
| ATTGAGCAATGGTGACTTTA+GGG | 0.276566 | 5.2:-75544750 | None:intergenic |
| CATTGAGCAATGGTGACTTT+AGG | 0.279223 | 5.2:-75544751 | None:intergenic |
| TTCTGCCTCTGAATGCCTTC+TGG | 0.281746 | 5.2:+75547807 | MS.gene47002:CDS |
| ATGTAAGCTCAGTGAAGTTT+TGG | 0.283527 | 5.2:+75543234 | MS.gene47002:CDS |
| TCCAGGGCAACAGATGTTAT+TGG | 0.284647 | 5.2:+75541992 | MS.gene47002:CDS |
| CTTCCCATAGCTCTTCAAAT+TGG | 0.291686 | 5.2:-75542988 | None:intergenic |
| TTTCAGCCTTTGTCGATCTA+AGG | 0.301840 | 5.2:+75533640 | MS.gene47002:CDS |
| GCTGCAAAACGTGCCTTTGC+TGG | 0.303761 | 5.2:+75541839 | MS.gene47002:CDS |
| AAAATTGAAAATCAAATTGA+TGG | 0.307482 | 5.2:+75530995 | MS.gene47002:CDS |
| ATACTAGAAAATTACTTTGA+TGG | 0.313884 | 5.2:-75536429 | None:intergenic |
| ATTATGCTCTCAAAATTTCA+TGG | 0.318695 | 5.2:+75531413 | MS.gene47002:CDS |
| AGGAGCATCAGATGCTAAAT+TGG | 0.320500 | 5.2:+75530113 | MS.gene47002:CDS |
| CCAATAACTTTGGCTGTTGC+CGG | 0.324952 | 5.2:-75531060 | None:intergenic |
| AAATCTTGTAACACTGCTAA+TGG | 0.325611 | 5.2:-75528340 | None:intergenic |
| CAAACCTCAATTTGTGTGTT+TGG | 0.327977 | 5.2:-75531567 | None:intergenic |
| GAGACTGAAGCAGAACTTCT+TGG | 0.328386 | 5.2:-75543276 | None:intergenic |
| CAAGAGATATTGTTGCTTCC+TGG | 0.328585 | 5.2:-75527309 | None:intergenic |
| TTCCAGTTGTCTTCCTTTCA+AGG | 0.329334 | 5.2:+75542035 | MS.gene47002:CDS |
| TTCATTGATTGCACTAACTA+AGG | 0.331311 | 5.2:-75547857 | None:intergenic |
| CCTAGAACAAAGTTCTTTGA+TGG | 0.331875 | 5.2:-75546808 | None:intergenic |
| CAGTGTAACTTCCCTTGTTC+AGG | 0.337977 | 5.2:+75546875 | MS.gene47002:CDS |
| TAAGTAAAGTTGACAGTGTT+AGG | 0.339899 | 5.2:+75538666 | MS.gene47002:CDS |
| CATGGTGCGCTTTGTGCAAT+AGG | 0.345458 | 5.2:+75531698 | MS.gene47002:CDS |
| CAGATGCTAAATTGGATATC+AGG | 0.346657 | 5.2:+75530121 | MS.gene47002:CDS |
| TCCAACATCATACCAAGTTT+GGG | 0.350759 | 5.2:-75531028 | None:intergenic |
| CACATCAAGGTTGAAGCAAT+TGG | 0.351388 | 5.2:+75523598 | MS.gene47002:CDS |
| TGAATCTATGAAACAAAATT+TGG | 0.360260 | 5.2:+75536358 | MS.gene47002:CDS |
| AATCTTGTAACACTGCTAAT+GGG | 0.364723 | 5.2:-75528339 | None:intergenic |
| GGGAATGGAATTTACTGTTT+GGG | 0.365265 | 5.2:+75523619 | MS.gene47002:CDS |
| ATCGATCAGCTTAAGTTAAT+GGG | 0.369879 | 5.2:+75524406 | MS.gene47002:CDS |
| AAGTTCAGTCGATCCTTCTA+AGG | 0.370042 | 5.2:-75531191 | None:intergenic |
| ATCATCAGCCTGCACCAAAA+AGG | 0.370900 | 5.2:+75543548 | MS.gene47002:CDS |
| GAATCAATTGCATGTTTACT+TGG | 0.371746 | 5.2:+75531475 | MS.gene47002:CDS |
| TGGGAATGGAATTTACTGTT+TGG | 0.371760 | 5.2:+75523618 | MS.gene47002:CDS |
| AGTTGTTGATGCAGAATCAT+TGG | 0.372676 | 5.2:+75540087 | MS.gene47002:CDS |
| ATAATTCCACTCAGAATAAC+AGG | 0.373683 | 5.2:-75524430 | None:intergenic |
| GTGTCAAAGCAGTTTCCTAA+TGG | 0.380634 | 5.2:+75534263 | MS.gene47002:CDS |
| GGCATTTGCCTCTCTTGAAC+AGG | 0.384404 | 5.2:+75543590 | MS.gene47002:CDS |
| GGACAACAAATCGGAGAGAT+TGG | 0.388125 | 5.2:-75527288 | None:intergenic |
| AGGAAATTCCCGGTCGCCTA+TGG | 0.388897 | 5.2:+75543305 | MS.gene47002:CDS |
| TTATACAATGTAGAACCTTC+GGG | 0.389004 | 5.2:-75546995 | None:intergenic |
| AGTATCTTCAATAAGTTTCT+GGG | 0.392914 | 5.2:-75541903 | None:intergenic |
| TCCAATGTGGATCCAGGCTT+TGG | 0.394847 | 5.2:+75537512 | MS.gene47002:CDS |
| CAAATGACATAGAGTGTTCC+AGG | 0.396340 | 5.2:-75531243 | None:intergenic |
| GCCCTTGCGGATATTATTCA+AGG | 0.398760 | 5.2:+75537559 | MS.gene47002:CDS |
| AGTTTCTGGGCTTGTGAGAC+TGG | 0.399387 | 5.2:-75541890 | None:intergenic |
| ATCATCCTCGCATCTAGATA+TGG | 0.400781 | 5.2:+75533604 | MS.gene47002:CDS |
| CTTATACAATGTAGAACCTT+CGG | 0.401094 | 5.2:-75546996 | None:intergenic |
| CAAGACATTCTGTTCGCTCC+TGG | 0.404614 | 5.2:+75531225 | MS.gene47002:CDS |
| TTCCCACATAGGAGAACCTT+TGG | 0.406236 | 5.2:-75540044 | None:intergenic |
| TTTCAGGTTATAAAAGCCTT+TGG | 0.407881 | 5.2:+75544668 | MS.gene47002:intron |
| AGCACACTAAATCAGACAAA+TGG | 0.408641 | 5.2:-75539820 | None:intergenic |
| TGCAATCAATGAAGAATTCA+AGG | 0.409590 | 5.2:+75547867 | MS.gene47002:CDS |
| CTTGCTCATTTAGTGCGATC+TGG | 0.414797 | 5.2:+75540127 | MS.gene47002:CDS |
| ATACCTGTCCATTTATGTTC+AGG | 0.417032 | 5.2:-75546686 | None:intergenic |
| AACCTTGAAAGGAAGACAAC+TGG | 0.422774 | 5.2:-75542037 | None:intergenic |
| ATGCAGCATAGATGTGCATT+AGG | 0.434399 | 5.2:-75546655 | None:intergenic |
| ACCAATAACATCTGTTGCCC+TGG | 0.436527 | 5.2:-75541993 | None:intergenic |
| GTATTTCAAGACGGGGCTCT+TGG | 0.440503 | 5.2:+75536574 | MS.gene47002:CDS |
| TACTGGTAGCGTACAAGCCT+TGG | 0.440825 | 5.2:-75536805 | None:intergenic |
| GTGAATACGTTGACTGGGTC+AGG | 0.441767 | 5.2:+75536392 | MS.gene47002:CDS |
| TACTAGTCCAATGTGGATCC+AGG | 0.442206 | 5.2:+75537506 | MS.gene47002:CDS |
| TGGCATGTTCATTAGTTCCC+TGG | 0.448892 | 5.2:-75546854 | None:intergenic |
| GCACACTAAATCAGACAAAT+GGG | 0.451016 | 5.2:-75539819 | None:intergenic |
| CTAGCCAATTTGAAGAGCTA+TGG | 0.451041 | 5.2:+75542984 | MS.gene47002:CDS |
| TTGCTTCCTGGACAACAAAT+CGG | 0.451600 | 5.2:-75527297 | None:intergenic |
| ACTACTGAGTCATGTGGATT+GGG | 0.455914 | 5.2:+75531444 | MS.gene47002:CDS |
| CCCCGATTGAAACAGAGAAA+TGG | 0.459809 | 5.2:+75530949 | MS.gene47002:intron |
| GGCATGTTCATTAGTTCCCT+GGG | 0.460069 | 5.2:-75546853 | None:intergenic |
| CTGGTGTTGGTCTTAACACT+AGG | 0.461346 | 5.2:+75540146 | MS.gene47002:CDS |
| AGTGTTAGGAAGGCATCAAT+TGG | 0.461513 | 5.2:+75538680 | MS.gene47002:CDS |
| GAGAAGAATAAGTCCTTAGA+AGG | 0.462573 | 5.2:+75531178 | MS.gene47002:CDS |
| AACTACTGAGTCATGTGGAT+TGG | 0.462751 | 5.2:+75531443 | MS.gene47002:CDS |
| ATCTCTCCGATTTGTTGTCC+AGG | 0.462999 | 5.2:+75527291 | MS.gene47002:CDS |
| TCAGTGGACTCCAATAACTT+TGG | 0.463404 | 5.2:-75531070 | None:intergenic |
| TCAGCCAAACACACAAATTG+AGG | 0.463834 | 5.2:+75531563 | MS.gene47002:CDS |
| CATTTAGTGCGATCTGGTGT+TGG | 0.464544 | 5.2:+75540133 | MS.gene47002:CDS |
| CAGCTTCACGCAGCAAATGT+TGG | 0.467150 | 5.2:+75539980 | MS.gene47002:intron |
| CTCACCAGCATATTAGCATA+TGG | 0.467945 | 5.2:-75541779 | None:intergenic |
| AAAATAACATCAGATGTTGC+AGG | 0.468285 | 5.2:-75531523 | None:intergenic |
| AACAGAGAAATGGCACTTGA+AGG | 0.473416 | 5.2:+75530959 | MS.gene47002:intron |
| GCGTTAATATTCTTCAAGAC+TGG | 0.475236 | 5.2:+75547953 | MS.gene47002:CDS |
| ATAAACTTATAGATTAAGTC+TGG | 0.475972 | 5.2:-75536667 | None:intergenic |
| TTCACGTGACCGCCAAAGCC+TGG | 0.476377 | 5.2:-75537524 | None:intergenic |
| TAGGCTCCACAATGTCATAA+AGG | 0.478856 | 5.2:+75546827 | MS.gene47002:CDS |
| ATCACTCTCAATTTATACTT+AGG | 0.479346 | 5.2:+75543031 | MS.gene47002:CDS |
| ACATCAAGGTTGAAGCAATT+GGG | 0.481894 | 5.2:+75523599 | MS.gene47002:CDS |
| GTTTACCTCCCATAGGCGAC+CGG | 0.482788 | 5.2:-75543314 | None:intergenic |
| TTGCCAAAGGTTCTCCTATG+TGG | 0.483734 | 5.2:+75540041 | MS.gene47002:CDS |
| AGGATGCAATGGTACACATA+TGG | 0.484821 | 5.2:+75537419 | MS.gene47002:intron |
| GACAACAAATCGGAGAGATT+GGG | 0.489179 | 5.2:-75527287 | None:intergenic |
| TCTGCTTCAGTCTCTTATGA+AGG | 0.491002 | 5.2:+75543285 | MS.gene47002:CDS |
| TCTCTTATGAAGGAAATTCC+CGG | 0.491828 | 5.2:+75543295 | MS.gene47002:CDS |
| CTCAATGATGCTGCTAAACC+AGG | 0.492837 | 5.2:+75544767 | MS.gene47002:CDS |
| GCACTTGTGAATACGTTGAC+TGG | 0.494632 | 5.2:+75536386 | MS.gene47002:CDS |
| GGTTTGAAGTACCCCAAACT+TGG | 0.495958 | 5.2:+75531016 | MS.gene47002:CDS |
| CAGAATTAACCACATCAACT+AGG | 0.496819 | 5.2:-75533282 | None:intergenic |
| GCTGTTGCAATGCAAGCATT+AGG | 0.500038 | 5.2:+75533322 | MS.gene47002:CDS |
| AGCAGTGTTACAAGATTTGG+AGG | 0.500943 | 5.2:+75528345 | MS.gene47002:CDS |
| CGTTGACTGGGTCAGGCAAA+CGG | 0.501320 | 5.2:+75536399 | MS.gene47002:CDS |
| GTCATGTGGATTGGGACACT+CGG | 0.501618 | 5.2:+75531452 | MS.gene47002:CDS |
| ATGGCAACGTATGTGCTTGA+AGG | 0.502656 | 5.2:-75531118 | None:intergenic |
| GTCAGGGGCATTTCGTGCCA+TGG | 0.502874 | 5.2:+75538487 | MS.gene47002:CDS |
| CATAAAGCTATTTCTGCTGA+TGG | 0.503385 | 5.2:+75543492 | MS.gene47002:CDS |
| AGCGATGTGCTGGAACCGTC+TGG | 0.503526 | 5.2:+75534381 | MS.gene47002:CDS |
| CCTCAACATAATTGAGCCCC+TGG | 0.503664 | 5.2:-75539874 | None:intergenic |
| CCCTAATTACCTCCTGAACA+AGG | 0.504467 | 5.2:-75546887 | None:intergenic |
| CCCCAAACTTGGTATGATGT+TGG | 0.505245 | 5.2:+75531027 | MS.gene47002:CDS |
| GAACACTCTATGTCATTTGA+AGG | 0.506977 | 5.2:+75531247 | MS.gene47002:CDS |
| ACATCAGATGTTGCAGGGAG+AGG | 0.509066 | 5.2:-75531517 | None:intergenic |
| ATTCTGAAGTATTTCAAGAC+GGG | 0.510541 | 5.2:+75536566 | MS.gene47002:CDS |
| TGACTCAGATGCCAGTGCTC+GGG | 0.511272 | 5.2:+75524561 | MS.gene47002:intron |
| AAAACCATATTAAAGAACTC+TGG | 0.512299 | 5.2:-75544695 | None:intergenic |
| TAGCCAATTTGAAGAGCTAT+GGG | 0.513500 | 5.2:+75542985 | MS.gene47002:CDS |
| ATGCAAGCATTAGGTCATAT+CGG | 0.515344 | 5.2:+75533331 | MS.gene47002:CDS |
| TCTCTATCTCATACTGATGA+AGG | 0.515919 | 5.2:-75547897 | None:intergenic |
| TGATATTCTTGAAAAGCAAA+AGG | 0.517404 | 5.2:+75546631 | MS.gene47002:CDS |
| ATTCAGAATGGCAATGGAAG+AGG | 0.517590 | 5.2:-75543520 | None:intergenic |
| GATACTGCAGCTTTGAGTGC+TGG | 0.517645 | 5.2:+75541920 | MS.gene47002:CDS |
| AGAATTGTGTCAGCATTGAC+AGG | 0.518238 | 5.2:-75534176 | None:intergenic |
| ATTTACGTGCTTTGATTCCA+AGG | 0.521775 | 5.2:+75536788 | MS.gene47002:CDS |
| AGTTATTCAAGCTCAGAAGC+AGG | 0.522034 | 5.2:+75524466 | MS.gene47002:CDS |
| CAGAAGATCGTCATATCCAT+TGG | 0.525487 | 5.2:+75533560 | MS.gene47002:CDS |
| TCATTGATTGCACTAACTAA+GGG | 0.526453 | 5.2:-75547856 | None:intergenic |
| AAATGAACTCACACAAGAGT+TGG | 0.528873 | 5.2:+75536298 | MS.gene47002:CDS |
| AATGTGGATCCAGGCTTTGG+CGG | 0.528981 | 5.2:+75537515 | MS.gene47002:CDS |
| AGGAAAGAAGAGCGATGTGC+TGG | 0.529003 | 5.2:+75534371 | MS.gene47002:CDS |
| GGAAATTCCCGGTCGCCTAT+GGG | 0.529176 | 5.2:+75543306 | MS.gene47002:CDS |
| TTTATCAAGCCTAGAAGACC+AGG | 0.529503 | 5.2:+75539856 | MS.gene47002:CDS |
| TTGACTCAGATGCCAGTGCT+CGG | 0.532242 | 5.2:+75524560 | MS.gene47002:intron |
| ATGAGATAGAGAAGAACGAA+GGG | 0.532391 | 5.2:+75547908 | MS.gene47002:CDS |
| AAGGTTGAAGCAATTGGGAA+TGG | 0.534387 | 5.2:+75523604 | MS.gene47002:CDS |
| CAGTCTATGATCTTGTTATG+TGG | 0.535431 | 5.2:-75546575 | None:intergenic |
| AGTTTCCTTAATGTCATCCA+TGG | 0.537460 | 5.2:-75538504 | None:intergenic |
| TTTACCTCCCATAGGCGACC+GGG | 0.539512 | 5.2:-75543313 | None:intergenic |
| TTGAGAATTTCTATTGCCAA+AGG | 0.540269 | 5.2:+75540028 | MS.gene47002:CDS |
| GAAGTGCTTTGAGTCAGAGT+TGG | 0.540656 | 5.2:+75531156 | MS.gene47002:CDS |
| AGCATCTTGTCTTGCCCTTG+CGG | 0.540947 | 5.2:+75537546 | MS.gene47002:CDS |
| GTTGTACGTGCAGTCTGCAC+AGG | 0.542259 | 5.2:+75543207 | MS.gene47002:intron |
| TAGGTAATGGTACCACATCA+AGG | 0.542955 | 5.2:+75523585 | None:intergenic |
| TCCTTGTTGCTTGAAAGTGT+TGG | 0.544109 | 5.2:+75541743 | MS.gene47002:CDS |
| GCTCTTGGTGAAACTGCTAC+TGG | 0.545587 | 5.2:+75536589 | MS.gene47002:CDS |
| AGCAGAAATAGCTTTATGGC+AGG | 0.548411 | 5.2:-75543487 | None:intergenic |
| TGATGTTGGATTATATTCTC+CGG | 0.553083 | 5.2:+75531041 | MS.gene47002:CDS |
| TATCAAATTCAGAATGGCAA+TGG | 0.554817 | 5.2:-75543526 | None:intergenic |
| AGCATGTTCCTAACCTTGAA+AGG | 0.555435 | 5.2:-75542048 | None:intergenic |
| CCAGGGGCTCAATTATGTTG+AGG | 0.560290 | 5.2:+75539874 | MS.gene47002:CDS |
| TGTAACTTCCCTTGTTCAGG+AGG | 0.560365 | 5.2:+75546878 | MS.gene47002:CDS |
| CAAGCCATATGCTAATATGC+TGG | 0.561282 | 5.2:+75541775 | MS.gene47002:CDS |
| CAAGTTTGATGATTTCCAGA+AGG | 0.562169 | 5.2:-75547822 | None:intergenic |
| ACTAACTAAGGGCACGGCCA+CGG | 0.562291 | 5.2:-75547845 | None:intergenic |
| TAAAGTTGACAGTGTTAGGA+AGG | 0.562448 | 5.2:+75538670 | MS.gene47002:CDS |
| ACACAAGAGTTGGCTTCTCA+AGG | 0.563867 | 5.2:+75536308 | MS.gene47002:CDS |
| GGGAGTCCTTTATGACATTG+TGG | 0.564001 | 5.2:-75546833 | None:intergenic |
| TTACCTGAACATAAATGGAC+AGG | 0.567557 | 5.2:+75546683 | MS.gene47002:CDS |
| ATGTAGCTTAGCAAATGAGA+TGG | 0.569279 | 5.2:+75536639 | MS.gene47002:CDS |
| CTCAGATGCCAGTGCTCGGG+AGG | 0.569291 | 5.2:+75524564 | MS.gene47002:intron |
| GTCAGATGCGCACAAAGCAA+TGG | 0.569533 | 5.2:+75538607 | MS.gene47002:CDS |
| CAATGTCATAAAGGACTCCC+AGG | 0.569593 | 5.2:+75546836 | MS.gene47002:CDS |
| CTGAACAAGGGAAGTTACAC+TGG | 0.570761 | 5.2:-75546874 | None:intergenic |
| AGGGCAACAGATGTTATTGG+TGG | 0.572068 | 5.2:+75541995 | MS.gene47002:CDS |
| TGCCAAAGGTTCTCCTATGT+GGG | 0.576166 | 5.2:+75540042 | MS.gene47002:CDS |
| GCCAAAGCCTGGATCCACAT+TGG | 0.577108 | 5.2:-75537513 | None:intergenic |
| GTAATTTACTTTGTATGCTG+CGG | 0.577321 | 5.2:-75527332 | None:intergenic |
| AGATGCCAGAAATATTTCTC+CGG | 0.578570 | 5.2:+75533245 | MS.gene47002:intron |
| CATTGGACACATTGATCCCA+CGG | 0.578614 | 5.2:+75540104 | MS.gene47002:CDS |
| ATGGGTCCTGTTATTCTGAG+TGG | 0.578672 | 5.2:+75524424 | MS.gene47002:CDS |
| ATGGCATGTCATCATCATCA+TGG | 0.579429 | 5.2:+75543077 | MS.gene47002:CDS |
| CGCACTAAATGAGCAAGCCG+TGG | 0.581186 | 5.2:-75540121 | None:intergenic |
| ACTTAGATGCCTAGTTGATG+TGG | 0.582282 | 5.2:+75533273 | MS.gene47002:CDS |
| ATTGTTTCACTGATTTGTGA+TGG | 0.582903 | 5.2:+75543058 | MS.gene47002:CDS |
| GTTTCATTCTATATCCCCGA+AGG | 0.582962 | 5.2:+75546980 | MS.gene47002:CDS |
| AAAGAACTCTGGATTGCCAA+AGG | 0.583093 | 5.2:-75544684 | None:intergenic |
| GATAGATTTGAGATTCAGCA+TGG | 0.585427 | 5.2:+75531680 | MS.gene47002:intron |
| CTGAGCTTGAATAACTGTCA+AGG | 0.586321 | 5.2:-75524459 | None:intergenic |
| GTCCTTGAATAATATCCGCA+AGG | 0.588230 | 5.2:-75537561 | None:intergenic |
| GATTTCCAGAAGGCATTCAG+AGG | 0.588371 | 5.2:-75547812 | None:intergenic |
| TTGAGCAATGGTGACTTTAG+GGG | 0.589103 | 5.2:-75544749 | None:intergenic |
| TGAGCTTGAATAACTGTCAA+GGG | 0.589769 | 5.2:-75524458 | None:intergenic |
| CAATTGCTTCAACCTTGATG+TGG | 0.590722 | 5.2:-75523597 | None:intergenic |
| TCATGTGGATTGGGACACTC+GGG | 0.592008 | 5.2:+75531453 | MS.gene47002:CDS |
| GAATTACCTTAGATCGACAA+AGG | 0.593193 | 5.2:-75533646 | None:intergenic |
| TGATGATATCAAATTCAGAA+TGG | 0.593655 | 5.2:-75543532 | None:intergenic |
| TGTAGCTTAGCAAATGAGAT+GGG | 0.595593 | 5.2:+75536640 | MS.gene47002:CDS |
| TGGCATGTCATCATCATCAT+GGG | 0.595650 | 5.2:+75543078 | MS.gene47002:CDS |
| AAGTCTAAAGTTTCCCACAT+AGG | 0.596629 | 5.2:-75540055 | None:intergenic |
| TCTGCTAAACAATTCTCAAG+TGG | 0.598026 | 5.2:+75528372 | MS.gene47002:CDS |
| GGTACACATATGGAAGTCAC+TGG | 0.599455 | 5.2:+75537429 | MS.gene47002:CDS |
| AAATAACATCAGATGTTGCA+GGG | 0.601120 | 5.2:-75531522 | None:intergenic |
| ATAATTCAAGACTTTCGCAC+AGG | 0.601479 | 5.2:-75541864 | None:intergenic |
| CTTGGTGAAACTGCTACTGG+TGG | 0.602637 | 5.2:+75536592 | MS.gene47002:CDS |
| CACTTGTGAATACGTTGACT+GGG | 0.603054 | 5.2:+75536387 | MS.gene47002:CDS |
| ATCTTGTAACACTGCTAATG+GGG | 0.604822 | 5.2:-75528338 | None:intergenic |
| GGAATCAAAGCACGTAAATG+TGG | 0.606809 | 5.2:-75536784 | None:intergenic |
| AAGAATATACAAGTGGGGAA+CGG | 0.607237 | 5.2:+75543008 | MS.gene47002:CDS |
| TCCTTGAATAATATCCGCAA+GGG | 0.608043 | 5.2:-75537560 | None:intergenic |
| GATTCTGAAGTATTTCAAGA+CGG | 0.608669 | 5.2:+75536565 | MS.gene47002:CDS |
| TATGGGAAGAATATACAAGT+GGG | 0.609206 | 5.2:+75543002 | MS.gene47002:CDS |
| CTGTAACGTCATTGACGACA+AGG | 0.610772 | 5.2:+75538558 | MS.gene47002:CDS |
| GTGCTGGTCTCTAATTTCAG+TGG | 0.612035 | 5.2:-75531086 | None:intergenic |
| TGGGAAACTGAACACGTACA+AGG | 0.615667 | 5.2:+75536612 | MS.gene47002:CDS |
| AAATGCGCATGCAATTTGAG+AGG | 0.619107 | 5.2:-75541951 | None:intergenic |
| GACTGGGACCTGAAAAGATG+AGG | 0.620630 | 5.2:-75524634 | None:intergenic |
| TTTCGCACAGGCACCAGCAA+AGG | 0.621912 | 5.2:-75541852 | None:intergenic |
| TGTCATCATCATCATGGGCA+AGG | 0.622010 | 5.2:+75543083 | MS.gene47002:CDS |
| GGAAATCATCAAACTTGCCG+TGG | 0.622017 | 5.2:+75547828 | MS.gene47002:CDS |
| CCTGAATTAGAATCATCAAG+TGG | 0.623426 | 5.2:-75533373 | None:intergenic |
| AGCATACAAATAAAACGACT+CGG | 0.626615 | 5.2:-75530090 | None:intergenic |
| TTAGCAGCATCATTGAGCAA+TGG | 0.627676 | 5.2:-75544761 | None:intergenic |
| TTTGATGGATTGAAATGCGG+TGG | 0.630278 | 5.2:-75546793 | None:intergenic |
| GATTGCACTAACTAAGGGCA+CGG | 0.630990 | 5.2:-75547851 | None:intergenic |
| ATGAGTATTGTGTATGACCT+TGG | 0.632894 | 5.2:+75536332 | MS.gene47002:CDS |
| TTTCAGGGAAAAGATTGACA+TGG | 0.636305 | 5.2:+75527231 | MS.gene47002:intron |
| CCTAATTACCTCCTGAACAA+GGG | 0.636410 | 5.2:-75546886 | None:intergenic |
| TTCTGAAGTATTTCAAGACG+GGG | 0.638026 | 5.2:+75536567 | MS.gene47002:CDS |
| ATGTGCCACGTGGATGCAAG+AGG | 0.640367 | 5.2:-75546603 | None:intergenic |
| TTCTTTGATGGATTGAAATG+CGG | 0.640779 | 5.2:-75546796 | None:intergenic |
| ATGTTGAAAATCAAACAAAG+AGG | 0.649557 | 5.2:-75530064 | None:intergenic |
| ATAACTTGCCTGTTCAAGAG+AGG | 0.649918 | 5.2:-75543598 | None:intergenic |
| AGTTGTAATGAAGCTTACGA+AGG | 0.650031 | 5.2:+75538703 | MS.gene47002:CDS |
| ACCAACACTTTCAAGCAACA+AGG | 0.651868 | 5.2:-75541744 | None:intergenic |
| GGGCAACAGATGTTATTGGT+GGG | 0.652672 | 5.2:+75541996 | MS.gene47002:CDS |
| TATGAGATAGAGAAGAACGA+AGG | 0.662090 | 5.2:+75547907 | MS.gene47002:CDS |
| GATGTGCTATTGCTAGCAGT+AGG | 0.662721 | 5.2:+75543450 | MS.gene47002:CDS |
| GATGATTTACTAGTCCAATG+TGG | 0.664404 | 5.2:+75537499 | MS.gene47002:CDS |
| AATTCCCGGTCGCCTATGGG+AGG | 0.665331 | 5.2:+75543309 | MS.gene47002:CDS |
| TTTGACCTCTTGCATCCACG+TGG | 0.666291 | 5.2:+75546598 | MS.gene47002:CDS |
| TAAGGCCATATCTAGATGCG+AGG | 0.666683 | 5.2:-75533609 | None:intergenic |
| TGTAAGTGATACTAGCCAGA+CGG | 0.667159 | 5.2:-75534396 | None:intergenic |
| GCACTAAATGAGCAAGCCGT+GGG | 0.667459 | 5.2:-75540120 | None:intergenic |
| CTATGGGAAGAATATACAAG+TGG | 0.670011 | 5.2:+75543001 | MS.gene47002:CDS |
| GTTTCATAGATTCATCACCA+AGG | 0.676150 | 5.2:-75536349 | None:intergenic |
| CTAAATCAGACAAATGGGGA+CGG | 0.678281 | 5.2:-75539814 | None:intergenic |
| TTGGTGAAACTGCTACTGGT+GGG | 0.680654 | 5.2:+75536593 | MS.gene47002:CDS |
| TTGCATAGATCAAACAACAA+GGG | 0.681673 | 5.2:-75544719 | None:intergenic |
| TAAACAACTACTGAGTCATG+TGG | 0.682644 | 5.2:+75531438 | MS.gene47002:CDS |
| TTATCAAGCCTAGAAGACCA+GGG | 0.682789 | 5.2:+75539857 | MS.gene47002:CDS |
| TCGTCAATGACGTTACAGAA+CGG | 0.683837 | 5.2:-75538553 | None:intergenic |
| GAATTAGAATCATCAAGTGG+AGG | 0.689610 | 5.2:-75533370 | None:intergenic |
| ATTGCATAGATCAAACAACA+AGG | 0.690307 | 5.2:-75544720 | None:intergenic |
| AATTGGATCACACATGCCAG+AGG | 0.691602 | 5.2:+75531312 | MS.gene47002:CDS |
| CCAACATCATACCAAGTTTG+GGG | 0.694651 | 5.2:-75531027 | None:intergenic |
| ATGGGAAGAATATACAAGTG+GGG | 0.695258 | 5.2:+75543003 | MS.gene47002:CDS |
| AATGTCATAAAGGACTCCCA+GGG | 0.706665 | 5.2:+75546837 | MS.gene47002:CDS |
| TGAGATAGAGAAGAACGAAG+GGG | 0.708184 | 5.2:+75547909 | MS.gene47002:CDS |
| TATCAAGCCTAGAAGACCAG+GGG | 0.711659 | 5.2:+75539858 | MS.gene47002:CDS |
| TATACAATGTAGAACCTTCG+GGG | 0.712290 | 5.2:-75546994 | None:intergenic |
| CACACTAAATCAGACAAATG+GGG | 0.731985 | 5.2:-75539818 | None:intergenic |
| GTATCACTTACAAAGTACTG+CGG | 0.744411 | 5.2:+75534407 | MS.gene47002:CDS |
| TATCATTTATATGTGCCACG+TGG | 0.756630 | 5.2:-75546613 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 75523588 | 75547981 | 75523588 | ID=MS.gene47002 |
| chr5.2 | mRNA | 75523588 | 75547981 | 75523588 | ID=MS.gene47002.t1;Parent=MS.gene47002 |
| chr5.2 | exon | 75523588 | 75523652 | 75523588 | ID=MS.gene47002.t1.exon1;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75523588 | 75523652 | 75523588 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75524400 | 75524487 | 75524400 | ID=MS.gene47002.t1.exon2;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75524400 | 75524487 | 75524400 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75524569 | 75524647 | 75524569 | ID=MS.gene47002.t1.exon3;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75524569 | 75524647 | 75524569 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75527237 | 75527345 | 75527237 | ID=MS.gene47002.t1.exon4;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75527237 | 75527345 | 75527237 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75528334 | 75528393 | 75528334 | ID=MS.gene47002.t1.exon5;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75528334 | 75528393 | 75528334 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75530024 | 75530142 | 75530024 | ID=MS.gene47002.t1.exon6;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75530024 | 75530142 | 75530024 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75530964 | 75531333 | 75530964 | ID=MS.gene47002.t1.exon7;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75530964 | 75531333 | 75530964 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75531400 | 75531584 | 75531400 | ID=MS.gene47002.t1.exon8;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75531400 | 75531584 | 75531400 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75531685 | 75531754 | 75531685 | ID=MS.gene47002.t1.exon9;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75531685 | 75531754 | 75531685 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75533247 | 75533394 | 75533247 | ID=MS.gene47002.t1.exon10;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75533247 | 75533394 | 75533247 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75533492 | 75533661 | 75533492 | ID=MS.gene47002.t1.exon11;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75533492 | 75533661 | 75533492 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75534119 | 75534469 | 75534119 | ID=MS.gene47002.t1.exon12;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75534119 | 75534469 | 75534119 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75536269 | 75536436 | 75536269 | ID=MS.gene47002.t1.exon13;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75536269 | 75536436 | 75536269 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75536556 | 75536849 | 75536556 | ID=MS.gene47002.t1.exon14;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75536556 | 75536849 | 75536556 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75537421 | 75537597 | 75537421 | ID=MS.gene47002.t1.exon15;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75537421 | 75537597 | 75537421 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75538461 | 75538724 | 75538461 | ID=MS.gene47002.t1.exon16;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75538461 | 75538724 | 75538461 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75539797 | 75539895 | 75539797 | ID=MS.gene47002.t1.exon17;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75539797 | 75539895 | 75539797 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75539983 | 75540167 | 75539983 | ID=MS.gene47002.t1.exon18;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75539983 | 75540167 | 75539983 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75541721 | 75542056 | 75541721 | ID=MS.gene47002.t1.exon19;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75541721 | 75542056 | 75541721 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75542961 | 75543114 | 75542961 | ID=MS.gene47002.t1.exon20;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75542961 | 75543114 | 75542961 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75543220 | 75543330 | 75543220 | ID=MS.gene47002.t1.exon21;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75543220 | 75543330 | 75543220 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75543444 | 75543611 | 75543444 | ID=MS.gene47002.t1.exon22;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75543444 | 75543611 | 75543444 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75544674 | 75544788 | 75544674 | ID=MS.gene47002.t1.exon23;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75544674 | 75544788 | 75544674 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75546546 | 75546704 | 75546546 | ID=MS.gene47002.t1.exon24;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75546546 | 75546704 | 75546546 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75546787 | 75546899 | 75546787 | ID=MS.gene47002.t1.exon25;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75546787 | 75546899 | 75546787 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75546978 | 75547037 | 75546978 | ID=MS.gene47002.t1.exon26;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75546978 | 75547037 | 75546978 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| chr5.2 | exon | 75547799 | 75547981 | 75547799 | ID=MS.gene47002.t1.exon27;Parent=MS.gene47002.t1 |
| chr5.2 | CDS | 75547799 | 75547981 | 75547799 | ID=cds.MS.gene47002.t1;Parent=MS.gene47002.t1 |
| Gene Sequence |
| Protein sequence |
