Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47062.t1 | XP_003618787.1 | 97.5 | 404 | 10 | 0 | 1 | 404 | 1 | 404 | 1.60E-226 | 795 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47062.t1 | O24554 | 73.8 | 397 | 101 | 2 | 8 | 404 | 8 | 401 | 1.2e-177 | 624.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47062.t1 | G7KN73 | 97.5 | 404 | 10 | 0 | 1 | 404 | 1 | 404 | 1.1e-226 | 795.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058015 | MS.gene47062 | 0.815154 | 1.07E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47062.t1 | MTR_6g021950 | 99.010 | 404 | 4 | 0 | 1 | 404 | 1 | 404 | 0.0 | 831 |
| MS.gene47062.t1 | MTR_4g104320 | 81.152 | 382 | 71 | 1 | 24 | 404 | 26 | 407 | 0.0 | 639 |
| MS.gene47062.t1 | MTR_3g075320 | 75.931 | 403 | 97 | 0 | 2 | 404 | 4 | 406 | 0.0 | 618 |
| MS.gene47062.t1 | MTR_3g086310 | 75.448 | 391 | 93 | 2 | 14 | 404 | 16 | 403 | 0.0 | 588 |
| MS.gene47062.t1 | MTR_1g047370 | 68.146 | 383 | 122 | 0 | 22 | 404 | 68 | 450 | 0.0 | 566 |
| MS.gene47062.t1 | MTR_7g059290 | 66.062 | 386 | 131 | 0 | 19 | 404 | 59 | 444 | 0.0 | 551 |
| MS.gene47062.t1 | MTR_3g086320 | 67.332 | 401 | 125 | 4 | 6 | 404 | 10 | 406 | 0.0 | 533 |
| MS.gene47062.t1 | MTR_1g062930 | 62.500 | 384 | 137 | 1 | 26 | 402 | 34 | 417 | 0.0 | 515 |
| MS.gene47062.t1 | MTR_1g111590 | 64.879 | 373 | 128 | 1 | 27 | 396 | 35 | 407 | 0.0 | 514 |
| MS.gene47062.t1 | MTR_7g102940 | 63.757 | 378 | 136 | 1 | 26 | 402 | 35 | 412 | 1.07e-178 | 506 |
| MS.gene47062.t1 | MTR_4g107870 | 57.219 | 374 | 155 | 3 | 34 | 404 | 63 | 434 | 2.45e-159 | 456 |
| MS.gene47062.t1 | MTR_3g075320 | 75.000 | 284 | 71 | 0 | 2 | 285 | 4 | 287 | 9.02e-157 | 443 |
| MS.gene47062.t1 | MTR_5g038510 | 55.978 | 368 | 161 | 1 | 38 | 404 | 82 | 449 | 1.23e-152 | 439 |
| MS.gene47062.t1 | MTR_4g132460 | 61.143 | 350 | 132 | 3 | 56 | 404 | 39 | 385 | 1.27e-151 | 434 |
| MS.gene47062.t1 | MTR_8g468980 | 53.367 | 401 | 171 | 4 | 20 | 404 | 55 | 455 | 6.34e-151 | 435 |
| MS.gene47062.t1 | MTR_5g038490 | 55.670 | 388 | 163 | 3 | 26 | 404 | 62 | 449 | 2.99e-149 | 431 |
| MS.gene47062.t1 | MTR_6g011420 | 53.299 | 394 | 171 | 3 | 24 | 404 | 60 | 453 | 1.67e-146 | 424 |
| MS.gene47062.t1 | MTR_2g023990 | 59.143 | 350 | 139 | 3 | 56 | 404 | 63 | 409 | 2.69e-146 | 421 |
| MS.gene47062.t1 | MTR_7g009390 | 57.910 | 354 | 148 | 1 | 52 | 404 | 98 | 451 | 3.01e-142 | 413 |
| MS.gene47062.t1 | MTR_8g078390 | 45.480 | 354 | 185 | 6 | 56 | 404 | 42 | 392 | 1.15e-98 | 299 |
| MS.gene47062.t1 | MTR_3g030900 | 45.198 | 354 | 186 | 6 | 56 | 404 | 23 | 373 | 3.57e-97 | 295 |
| MS.gene47062.t1 | MTR_8g078310 | 45.198 | 354 | 186 | 7 | 56 | 404 | 42 | 392 | 4.19e-97 | 295 |
| MS.gene47062.t1 | MTR_3g070740 | 65.854 | 205 | 57 | 2 | 201 | 404 | 134 | 326 | 8.93e-92 | 280 |
| MS.gene47062.t1 | MTR_8g078350 | 45.198 | 354 | 186 | 6 | 56 | 404 | 42 | 392 | 3.00e-91 | 280 |
| MS.gene47062.t1 | MTR_4g064420 | 44.540 | 348 | 172 | 7 | 56 | 400 | 42 | 371 | 1.71e-89 | 276 |
| MS.gene47062.t1 | MTR_8g078280 | 43.503 | 354 | 192 | 6 | 56 | 404 | 42 | 392 | 3.44e-89 | 275 |
| MS.gene47062.t1 | MTR_5g019060 | 42.373 | 354 | 196 | 6 | 56 | 404 | 41 | 391 | 9.40e-85 | 264 |
| MS.gene47062.t1 | MTR_5g035840 | 42.373 | 354 | 196 | 6 | 56 | 404 | 41 | 391 | 2.65e-84 | 263 |
| MS.gene47062.t1 | MTR_5g019160 | 42.090 | 354 | 197 | 6 | 56 | 404 | 41 | 391 | 6.27e-84 | 261 |
| MS.gene47062.t1 | MTR_5g019170 | 42.609 | 345 | 190 | 6 | 56 | 395 | 41 | 382 | 1.73e-81 | 257 |
| MS.gene47062.t1 | MTR_5g019090 | 42.090 | 354 | 197 | 6 | 56 | 404 | 41 | 391 | 1.79e-81 | 255 |
| MS.gene47062.t1 | MTR_2g023980 | 50.584 | 257 | 93 | 6 | 131 | 385 | 1 | 225 | 3.61e-73 | 232 |
| MS.gene47062.t1 | MTR_1g069950 | 43.657 | 268 | 147 | 3 | 131 | 396 | 1 | 266 | 2.41e-68 | 217 |
| MS.gene47062.t1 | MTR_6g077900 | 43.253 | 289 | 141 | 7 | 89 | 374 | 6 | 274 | 2.41e-59 | 194 |
| MS.gene47062.t1 | MTR_1g115550 | 38.699 | 292 | 153 | 7 | 69 | 359 | 9 | 275 | 1.03e-49 | 171 |
| MS.gene47062.t1 | MTR_1g067450 | 36.491 | 285 | 157 | 4 | 75 | 359 | 64 | 324 | 4.75e-40 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47062.t1 | AT3G27400 | 72.660 | 406 | 105 | 2 | 4 | 404 | 12 | 416 | 0.0 | 616 |
| MS.gene47062.t1 | AT3G27400 | 72.660 | 406 | 105 | 2 | 4 | 404 | 8 | 412 | 0.0 | 616 |
| MS.gene47062.t1 | AT5G63180 | 73.449 | 403 | 104 | 2 | 5 | 404 | 30 | 432 | 0.0 | 615 |
| MS.gene47062.t1 | AT1G67750 | 74.036 | 389 | 99 | 1 | 16 | 404 | 22 | 408 | 0.0 | 607 |
| MS.gene47062.t1 | AT4G24780 | 73.116 | 398 | 105 | 2 | 8 | 404 | 12 | 408 | 0.0 | 594 |
| MS.gene47062.t1 | AT4G24780 | 73.116 | 398 | 105 | 2 | 8 | 404 | 12 | 408 | 0.0 | 594 |
| MS.gene47062.t1 | AT4G13710 | 66.667 | 393 | 127 | 1 | 16 | 404 | 78 | 470 | 0.0 | 589 |
| MS.gene47062.t1 | AT4G13710 | 66.667 | 393 | 127 | 1 | 16 | 404 | 59 | 451 | 0.0 | 587 |
| MS.gene47062.t1 | AT3G07010 | 68.317 | 404 | 121 | 1 | 8 | 404 | 13 | 416 | 0.0 | 572 |
| MS.gene47062.t1 | AT3G07010 | 71.088 | 377 | 109 | 0 | 28 | 404 | 7 | 383 | 0.0 | 567 |
| MS.gene47062.t1 | AT1G04680 | 67.617 | 386 | 121 | 1 | 23 | 404 | 44 | 429 | 0.0 | 556 |
| MS.gene47062.t1 | AT3G24670 | 68.586 | 382 | 120 | 0 | 23 | 404 | 59 | 440 | 0.0 | 551 |
| MS.gene47062.t1 | AT3G24230 | 65.285 | 386 | 129 | 2 | 23 | 404 | 67 | 451 | 0.0 | 546 |
| MS.gene47062.t1 | AT5G48900 | 68.848 | 382 | 119 | 0 | 23 | 404 | 36 | 417 | 0.0 | 534 |
| MS.gene47062.t1 | AT4G13210 | 68.407 | 383 | 120 | 1 | 23 | 404 | 56 | 438 | 0.0 | 528 |
| MS.gene47062.t1 | AT4G13210 | 68.407 | 383 | 120 | 1 | 23 | 404 | 19 | 401 | 0.0 | 526 |
| MS.gene47062.t1 | AT3G53190 | 61.017 | 413 | 144 | 3 | 1 | 396 | 2 | 414 | 1.11e-179 | 509 |
| MS.gene47062.t1 | AT5G04310 | 62.402 | 383 | 131 | 1 | 27 | 396 | 53 | 435 | 2.69e-171 | 488 |
| MS.gene47062.t1 | AT5G04310 | 61.856 | 388 | 135 | 1 | 27 | 401 | 53 | 440 | 4.11e-170 | 486 |
| MS.gene47062.t1 | AT5G04310 | 61.856 | 388 | 135 | 1 | 27 | 401 | 53 | 440 | 4.11e-170 | 486 |
| MS.gene47062.t1 | AT5G55720 | 56.858 | 401 | 158 | 4 | 5 | 404 | 6 | 392 | 8.73e-168 | 475 |
| MS.gene47062.t1 | AT3G54920 | 59.481 | 385 | 132 | 4 | 27 | 396 | 37 | 412 | 3.77e-167 | 478 |
| MS.gene47062.t1 | AT1G14420 | 53.947 | 380 | 167 | 2 | 33 | 404 | 80 | 459 | 1.76e-150 | 434 |
| MS.gene47062.t1 | AT1G11920 | 58.000 | 350 | 144 | 3 | 56 | 404 | 37 | 384 | 4.35e-148 | 425 |
| MS.gene47062.t1 | AT4G22090 | 57.429 | 350 | 145 | 3 | 56 | 404 | 47 | 393 | 1.45e-145 | 419 |
| MS.gene47062.t1 | AT5G15110 | 54.930 | 355 | 158 | 2 | 52 | 404 | 118 | 472 | 1.97e-144 | 419 |
| MS.gene47062.t1 | AT3G01270 | 55.775 | 355 | 155 | 2 | 52 | 404 | 121 | 475 | 2.06e-144 | 419 |
| MS.gene47062.t1 | AT4G22080 | 57.143 | 350 | 146 | 3 | 56 | 404 | 47 | 393 | 1.35e-143 | 414 |
| MS.gene47062.t1 | AT1G30350 | 52.010 | 398 | 158 | 5 | 7 | 404 | 4 | 368 | 9.24e-140 | 403 |
| MS.gene47062.t1 | AT2G02720 | 53.239 | 355 | 160 | 1 | 56 | 404 | 101 | 455 | 2.08e-139 | 405 |
| MS.gene47062.t1 | AT5G09280 | 47.984 | 248 | 127 | 2 | 89 | 335 | 6 | 252 | 6.80e-78 | 243 |
| MS.gene47062.t1 | AT3G55140 | 39.510 | 286 | 147 | 7 | 75 | 359 | 16 | 276 | 2.49e-50 | 172 |
| MS.gene47062.t1 | AT3G09540 | 36.111 | 288 | 158 | 5 | 73 | 359 | 61 | 323 | 1.84e-43 | 155 |
| MS.gene47062.t1 | AT3G55140 | 39.044 | 251 | 132 | 6 | 110 | 359 | 22 | 252 | 3.91e-42 | 150 |
| MS.gene47062.t1 | AT3G09540 | 35.764 | 288 | 155 | 6 | 73 | 359 | 61 | 319 | 1.59e-41 | 150 |
| MS.gene47062.t1 | AT3G09540 | 35.510 | 245 | 134 | 4 | 73 | 317 | 61 | 281 | 5.86e-36 | 133 |
Find 82 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATTGCATTTAATCATTT+TGG | 0.123912 | 6.3:-15354853 | MS.gene47062:CDS |
| TGTTTAATTCACAACATATT+TGG | 0.148343 | 6.3:-15355035 | MS.gene47062:CDS |
| CACCAGAACATAGTGGATTT+TGG | 0.165374 | 6.3:-15355086 | MS.gene47062:CDS |
| TGTCGGTTGTTCTCCCAATT+TGG | 0.183698 | 6.3:+15355462 | None:intergenic |
| GAAGAGGATGAAACAAAATT+TGG | 0.190078 | 6.3:+15356492 | None:intergenic |
| ATGCATACCTTGGCATTCTT+TGG | 0.240400 | 6.3:+15354818 | None:intergenic |
| ATCTACATTGTCACTGATTC+AGG | 0.262745 | 6.3:-15355378 | MS.gene47062:CDS |
| TCAATTAAAACAAGAGCTTT+TGG | 0.287323 | 6.3:-15355259 | MS.gene47062:CDS |
| TCATGACAAAGTTATGCTTT+TGG | 0.300199 | 6.3:-15354917 | MS.gene47062:CDS |
| GCTGATTGTGCAATTGGATT+TGG | 0.305034 | 6.3:-15355432 | MS.gene47062:CDS |
| GTCGGTTGTTCTCCCAATTT+GGG | 0.308400 | 6.3:+15355463 | None:intergenic |
| CAATTCAAGATGAACCATTA+TGG | 0.310393 | 6.3:-15355308 | MS.gene47062:CDS |
| TCCTTGCTAAATCTATTATC+TGG | 0.317797 | 6.3:+15353763 | None:intergenic |
| TACCTTAATGTTCCTGGCTT+AGG | 0.318773 | 6.3:+15355336 | None:intergenic |
| GTTGGAGATGTGACCCAAAT+TGG | 0.323275 | 6.3:-15355476 | MS.gene47062:CDS |
| GGTTCCATCACTACTACTTC+TGG | 0.332285 | 6.3:-15353574 | MS.gene47062:CDS |
| GCACCATACCTTAATGTTCC+TGG | 0.337883 | 6.3:+15355330 | None:intergenic |
| TTCCCTTGGCTGTTGATTGT+AGG | 0.338196 | 6.3:+15353799 | None:intergenic |
| ACCTTAATGTTCCTGGCTTA+GGG | 0.354026 | 6.3:+15355337 | None:intergenic |
| ACATCTTGTACAACAAGTTC+AGG | 0.356255 | 6.3:+15356459 | None:intergenic |
| AGACTAGCTGATTGTGCAAT+TGG | 0.358822 | 6.3:-15355438 | MS.gene47062:CDS |
| ACCCTAAGCCAGGAACATTA+AGG | 0.369613 | 6.3:-15355338 | MS.gene47062:CDS |
| GTGAATATAATAGCTGGAAT+TGG | 0.370547 | 6.3:-15353711 | MS.gene47062:CDS |
| CACAATCAGCTAGTCTTTGT+CGG | 0.381751 | 6.3:+15355445 | None:intergenic |
| GCAAGACCAGCCTCTCTTGT+TGG | 0.384223 | 6.3:-15353595 | MS.gene47062:CDS |
| GAGGGTGATTTGTTCTTGAA+TGG | 0.394829 | 6.3:-15353682 | MS.gene47062:CDS |
| CTCTAGGTCTAGGAGAAACT+TGG | 0.396252 | 6.3:-15355538 | MS.gene47062:CDS |
| AAGAGGATGAAACAAAATTT+GGG | 0.396495 | 6.3:+15356493 | None:intergenic |
| GGCTATTTATCATGTGGAAC+TGG | 0.405816 | 6.3:-15355516 | MS.gene47062:CDS |
| GGAGCATTCTTTAGAACAAC+TGG | 0.412632 | 6.3:-15353661 | MS.gene47062:CDS |
| GTTCATGATTGTGTTCCAAC+GGG | 0.420422 | 6.3:-15355129 | MS.gene47062:CDS |
| TCCCTTGGCTGTTGATTGTA+GGG | 0.426471 | 6.3:+15353800 | None:intergenic |
| AATTCATACAAGACAATTGA+TGG | 0.427271 | 6.3:-15355234 | MS.gene47062:CDS |
| GATCATATTCAAAAGAGATA+TGG | 0.439191 | 6.3:-15355286 | MS.gene47062:CDS |
| GCAATCCAATTGATGATTGT+TGG | 0.439325 | 6.3:-15355494 | MS.gene47062:CDS |
| CATCTCCAACAATCATCAAT+TGG | 0.440002 | 6.3:+15355489 | None:intergenic |
| CATTGGGAAATGTATGCAAT+TGG | 0.444123 | 6.3:-15353835 | MS.gene47062:CDS |
| GAACAATGATTACACACATT+GGG | 0.453403 | 6.3:-15353851 | MS.gene47062:CDS |
| GTTAATAATGTTATAATACA+TGG | 0.461906 | 6.3:-15355159 | MS.gene47062:CDS |
| GGATTTGGAAAAGATGCAAT+TGG | 0.464882 | 6.3:-15355417 | MS.gene47062:CDS |
| CAGAAAGTGAATATAATAGC+TGG | 0.465031 | 6.3:-15353717 | MS.gene47062:CDS |
| GTCCAAAATCCACTATGTTC+TGG | 0.466293 | 6.3:+15355084 | None:intergenic |
| GTGCAAGAAATCTGTTCCCT+TGG | 0.476596 | 6.3:+15353785 | None:intergenic |
| GCATCAATGTCTCTAGGTCT+AGG | 0.489694 | 6.3:-15355548 | MS.gene47062:CDS |
| TGGTGTGCTCTCTTGCAAGA+AGG | 0.490798 | 6.3:-15353554 | MS.gene47062:CDS |
| TTGGAGATGTGACCCAAATT+GGG | 0.502512 | 6.3:-15355475 | MS.gene47062:CDS |
| CTAATATTTGTGTTCCCCGT+TGG | 0.503319 | 6.3:+15355114 | None:intergenic |
| GGTGTGCTCTCTTGCAAGAA+GGG | 0.508661 | 6.3:-15353553 | MS.gene47062:CDS |
| AGCTGGAATTGGAGATCAGA+GGG | 0.527960 | 6.3:-15353700 | MS.gene47062:CDS |
| TCTTTGTCTAATTGTCGTGA+TGG | 0.533384 | 6.3:-15355000 | MS.gene47062:CDS |
| TGGGAAATGTATGCAATTGG+AGG | 0.535593 | 6.3:-15353832 | MS.gene47062:CDS |
| ATGGAACCAACAAGAGAGGC+TGG | 0.542918 | 6.3:+15353589 | None:intergenic |
| TGTTCATGATTGTGTTCCAA+CGG | 0.543560 | 6.3:-15355130 | MS.gene47062:CDS |
| TACACAAGACAAGGACATGC+AGG | 0.544315 | 6.3:-15354878 | MS.gene47062:CDS |
| GTAGGAGCATCAATGTCTCT+AGG | 0.545125 | 6.3:-15355554 | MS.gene47062:intron |
| GGTCTTATTGATGTTATACA+TGG | 0.549548 | 6.3:-15354979 | MS.gene47062:CDS |
| TGAACAATGATTACACACAT+TGG | 0.549687 | 6.3:-15353852 | MS.gene47062:CDS |
| CACACCAGAAGTAGTAGTGA+TGG | 0.559967 | 6.3:+15353570 | None:intergenic |
| AGAGATTCACCAGAACATAG+TGG | 0.561715 | 6.3:-15355093 | MS.gene47062:CDS |
| TACAAGACAATTGATGGAAG+AGG | 0.566366 | 6.3:-15355228 | MS.gene47062:CDS |
| AATTCCATCACCATCTGAAA+CGG | 0.566606 | 6.3:+15355062 | None:intergenic |
| ACCAGATAATAGATTTAGCA+AGG | 0.568377 | 6.3:-15353764 | MS.gene47062:CDS |
| AACCCTACAATCAACAGCCA+AGG | 0.572050 | 6.3:-15353802 | MS.gene47062:CDS |
| AACTTGGGCTATTTATCATG+TGG | 0.574554 | 6.3:-15355522 | MS.gene47062:CDS |
| TGGACCGTTTCAGATGGTGA+TGG | 0.575388 | 6.3:-15355066 | MS.gene47062:CDS |
| AAGCCAGGAACATTAAGGTA+TGG | 0.578760 | 6.3:-15355333 | MS.gene47062:CDS |
| TTCAGGGTCTTGAACTGAAG+AGG | 0.579107 | 6.3:+15356476 | None:intergenic |
| GCTAGTGTTCACATTGCAAA+TGG | 0.586396 | 6.3:-15355204 | MS.gene47062:CDS |
| CATCTTGTACAACAAGTTCA+GGG | 0.601679 | 6.3:+15356460 | None:intergenic |
| GATGCAGTAAACCCTAAGCC+AGG | 0.603794 | 6.3:-15355348 | MS.gene47062:CDS |
| GGGAAATGTATGCAATTGGA+GGG | 0.622895 | 6.3:-15353831 | MS.gene47062:CDS |
| CAAGGAAGTAACAAAGCATG+AGG | 0.625208 | 6.3:-15353746 | MS.gene47062:CDS |
| TTTGGAAAAGATGCAATTGG+TGG | 0.625951 | 6.3:-15355414 | MS.gene47062:CDS |
| ACCCTACAATCAACAGCCAA+GGG | 0.631197 | 6.3:-15353801 | MS.gene47062:CDS |
| TCTAGGTCTAGGAGAAACTT+GGG | 0.631443 | 6.3:-15355537 | MS.gene47062:CDS |
| AGTGTTCACATTGCAAATGG+TGG | 0.646316 | 6.3:-15355201 | MS.gene47062:CDS |
| TAGCTGGAATTGGAGATCAG+AGG | 0.658304 | 6.3:-15353701 | MS.gene47062:CDS |
| AGTGATGGAACCAACAAGAG+AGG | 0.669990 | 6.3:+15353585 | None:intergenic |
| TTCATGATTGTGTTCCAACG+GGG | 0.684589 | 6.3:-15355128 | MS.gene47062:CDS |
| TGATTCTTATACACAAGACA+AGG | 0.687935 | 6.3:-15354887 | MS.gene47062:CDS |
| TTGTTGTACAAGATGTACAA+AGG | 0.691137 | 6.3:-15356452 | MS.gene47062:intron |
| GGCTTGTCCAAAGAATGCCA+AGG | 0.703891 | 6.3:-15354825 | MS.gene47062:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATAATATATAATTAACT+TGG | + | chr6.3:15354414-15354433 | None:intergenic | 10.0% |
| !!! | ACATTTTTTTTTTATGTTTA+TGG | + | chr6.3:15355866-15355885 | None:intergenic | 10.0% |
| !!! | CATTTTTTTTTTATGTTTAT+GGG | + | chr6.3:15355865-15355884 | None:intergenic | 10.0% |
| !! | CAATCAGAAATAAAATTATT+TGG | + | chr6.3:15355534-15355553 | None:intergenic | 15.0% |
| !! | CTGAAAACAATAATTATTTA+TGG | + | chr6.3:15356179-15356198 | None:intergenic | 15.0% |
| !! | GTTAATAATGTTATAATACA+TGG | - | chr6.3:15354918-15354937 | MS.gene47062:CDS | 15.0% |
| !!! | ACTTTTTTTTCTTTCTAAAT+GGG | + | chr6.3:15354159-15354178 | None:intergenic | 15.0% |
| !!! | ATAGATTTTAATTTCTATCA+CGG | - | chr6.3:15355582-15355601 | MS.gene47062:intron | 15.0% |
| !!! | GTTTCTCTTTTAAAAAAAAA+AGG | + | chr6.3:15355442-15355461 | None:intergenic | 15.0% |
| !!! | TTCTTGTTTGTTTTTTTAAA+AGG | - | chr6.3:15354211-15354230 | MS.gene47062:intron | 15.0% |
| !! | AAATTCAAAAAGTAGGATAA+AGG | - | chr6.3:15356066-15356085 | MS.gene47062:intron | 20.0% |
| !! | ATTTACGTATAAATGTTTGA+AGG | + | chr6.3:15354288-15354307 | None:intergenic | 20.0% |
| !! | CCTTAAAAAATTCAAAAAGT+AGG | - | chr6.3:15356059-15356078 | MS.gene47062:intron | 20.0% |
| !! | TAGAAAGAAAAAAAAGTCTT+TGG | - | chr6.3:15354162-15354181 | MS.gene47062:intron | 20.0% |
| !! | TGTTTAATTCACAACATATT+TGG | - | chr6.3:15355042-15355061 | MS.gene47062:CDS | 20.0% |
| !! | TTTACGTATAAATGTTTGAA+GGG | + | chr6.3:15354287-15354306 | None:intergenic | 20.0% |
| !!! | AACTGATTTTAGTTTATTCT+TGG | + | chr6.3:15353971-15353990 | None:intergenic | 20.0% |
| !!! | ACTATTGCATTTAATCATTT+TGG | - | chr6.3:15355224-15355243 | MS.gene47062:CDS | 20.0% |
| !!! | ATTTTAATTTCTCTTCTTGT+AGG | - | chr6.3:15354505-15354524 | MS.gene47062:intron | 20.0% |
| !!! | CCTACTTTTTGAATTTTTTA+AGG | + | chr6.3:15356062-15356081 | None:intergenic | 20.0% |
| !!! | GACTTTTTTTTCTTTCTAAA+TGG | + | chr6.3:15354160-15354179 | None:intergenic | 20.0% |
| !!! | GTTATTTTTTTTTAGCATAG+TGG | - | chr6.3:15355319-15355338 | MS.gene47062:CDS | 20.0% |
| !!! | TGCTCAAACTTTTTTAATTT+GGG | + | chr6.3:15355411-15355430 | None:intergenic | 20.0% |
| !!! | TTGAATTTTTTAAGGTAGTT+AGG | + | chr6.3:15356054-15356073 | None:intergenic | 20.0% |
| ! | AAGAGGATGAAACAAAATTT+GGG | + | chr6.3:15353587-15353606 | None:intergenic | 25.0% |
| ! | AATTCATACAAGACAATTGA+TGG | - | chr6.3:15354843-15354862 | MS.gene47062:CDS | 25.0% |
| ! | ATAAATGTTTGAAGGGAAAA+GGG | + | chr6.3:15354280-15354299 | None:intergenic | 25.0% |
| ! | GATCATATTCAAAAGAGATA+TGG | - | chr6.3:15354791-15354810 | MS.gene47062:intron | 25.0% |
| ! | GCTATTATGAGATATTTAGA+AGG | + | chr6.3:15355922-15355941 | None:intergenic | 25.0% |
| ! | TATAAATGTTTGAAGGGAAA+AGG | + | chr6.3:15354281-15354300 | None:intergenic | 25.0% |
| ! | TCAAAGAGTTTAATTACTGA+CGG | - | chr6.3:15354328-15354347 | MS.gene47062:intron | 25.0% |
| ! | TGAGTGTTTGAACAAATAAT+AGG | + | chr6.3:15356125-15356144 | None:intergenic | 25.0% |
| !! | CACATTTCTTTGAATTTGTT+AGG | + | chr6.3:15356017-15356036 | None:intergenic | 25.0% |
| !! | CTTTTGAATATGATCCATAA+TGG | + | chr6.3:15354786-15354805 | None:intergenic | 25.0% |
| !! | TCAATTAAAACAAGAGCTTT+TGG | - | chr6.3:15354818-15354837 | MS.gene47062:intron | 25.0% |
| !! | TCTTAATCATGTTTTGTATG+TGG | - | chr6.3:15353666-15353685 | MS.gene47062:CDS | 25.0% |
| !!! | CATTTAATCATTTTGGTGAA+GGG | - | chr6.3:15355231-15355250 | MS.gene47062:CDS | 25.0% |
| !!! | GGTAAGTTCTTGTTTTTAAT+TGG | - | chr6.3:15354232-15354251 | MS.gene47062:intron | 25.0% |
| !!! | GTGCTCAAACTTTTTTAATT+TGG | + | chr6.3:15355412-15355431 | None:intergenic | 25.0% |
| AAGAAAATCTCATTGCAGTT+GGG | + | chr6.3:15355635-15355654 | None:intergenic | 30.0% | |
| ACAATGTGGTGAATTATCAT+CGG | + | chr6.3:15354128-15354147 | None:intergenic | 30.0% | |
| ACCAGATAATAGATTTAGCA+AGG | - | chr6.3:15356313-15356332 | MS.gene47062:intron | 30.0% | |
| ATATGTAAGACCAACACTTT+GGG | - | chr6.3:15355557-15355576 | MS.gene47062:intron | 30.0% | |
| CAATTCAAGATGAACCATTA+TGG | - | chr6.3:15354769-15354788 | MS.gene47062:intron | 30.0% | |
| CAGAAAGTGAATATAATAGC+TGG | - | chr6.3:15356360-15356379 | MS.gene47062:intron | 30.0% | |
| CGTTGTTCAACATCATTAAA+CGG | + | chr6.3:15355464-15355483 | None:intergenic | 30.0% | |
| GAACAATGATTACACACATT+GGG | - | chr6.3:15356226-15356245 | MS.gene47062:intron | 30.0% | |
| GAAGAGGATGAAACAAAATT+TGG | + | chr6.3:15353588-15353607 | None:intergenic | 30.0% | |
| GTCATGATACTACTAAGAAA+GGG | + | chr6.3:15355965-15355984 | None:intergenic | 30.0% | |
| GTGAATATAATAGCTGGAAT+TGG | - | chr6.3:15356366-15356385 | MS.gene47062:intron | 30.0% | |
| TAAGAAAATCTCATTGCAGT+TGG | + | chr6.3:15355636-15355655 | None:intergenic | 30.0% | |
| TACTTGTGGTGAATTATCAT+CGG | + | chr6.3:15354085-15354104 | None:intergenic | 30.0% | |
| TATATGTAAGACCAACACTT+TGG | - | chr6.3:15355556-15355575 | MS.gene47062:intron | 30.0% | |
| TCCTTGCTAAATCTATTATC+TGG | + | chr6.3:15356317-15356336 | None:intergenic | 30.0% | |
| TGAACAATGATTACACACAT+TGG | - | chr6.3:15356225-15356244 | MS.gene47062:intron | 30.0% | |
| TGATTCTTATACACAAGACA+AGG | - | chr6.3:15355190-15355209 | MS.gene47062:CDS | 30.0% | |
| TGTCATATATATGCATACCT+TGG | + | chr6.3:15355272-15355291 | None:intergenic | 30.0% | |
| TTCTCAACTTCATAAAAGCA+CGG | - | chr6.3:15355736-15355755 | MS.gene47062:intron | 30.0% | |
| TTGAAGTTTCTGTGTTAAAG+TGG | + | chr6.3:15355716-15355735 | None:intergenic | 30.0% | |
| TTGTTGTACAAGATGTACAA+AGG | - | chr6.3:15353625-15353644 | MS.gene47062:CDS | 30.0% | |
| ! | AATGGGTTTATATGACAATG+TGG | + | chr6.3:15354142-15354161 | None:intergenic | 30.0% |
| ! | AGATTTTCTTAGTGCTTGTT+TGG | - | chr6.3:15355645-15355664 | MS.gene47062:intron | 30.0% |
| ! | ATTGTTTTCAGATGTAGACA+TGG | - | chr6.3:15356188-15356207 | MS.gene47062:intron | 30.0% |
| ! | CATGACAAAGTTATGCTTTT+GGG | - | chr6.3:15355161-15355180 | MS.gene47062:CDS | 30.0% |
| ! | GTGTAAAATAGTCTTACTTG+TGG | + | chr6.3:15354099-15354118 | None:intergenic | 30.0% |
| ! | GTTTAATAGAAGTGCATTGT+CGG | - | chr6.3:15354035-15354054 | MS.gene47062:intron | 30.0% |
| ! | TCATGACAAAGTTATGCTTT+TGG | - | chr6.3:15355160-15355179 | MS.gene47062:CDS | 30.0% |
| !! | GCATTTAATCATTTTGGTGA+AGG | - | chr6.3:15355230-15355249 | MS.gene47062:CDS | 30.0% |
| !! | GGTCTTATTGATGTTATACA+TGG | - | chr6.3:15355098-15355117 | MS.gene47062:CDS | 30.0% |
| AAATCTATCTCCCAAAGTGT+TGG | + | chr6.3:15355570-15355589 | None:intergenic | 35.0% | |
| AACTTGGGCTATTTATCATG+TGG | - | chr6.3:15354555-15354574 | MS.gene47062:intron | 35.0% | |
| AATTCCATCACCATCTGAAA+CGG | + | chr6.3:15355018-15355037 | None:intergenic | 35.0% | |
| ACATCTTGTACAACAAGTTC+AGG | + | chr6.3:15353621-15353640 | None:intergenic | 35.0% | |
| CATCTCCAACAATCATCAAT+TGG | + | chr6.3:15354591-15354610 | None:intergenic | 35.0% | |
| CATCTTGTACAACAAGTTCA+GGG | + | chr6.3:15353620-15353639 | None:intergenic | 35.0% | |
| CATTGGGAAATGTATGCAAT+TGG | - | chr6.3:15356242-15356261 | MS.gene47062:intron | 35.0% | |
| CGTCATGATACTACTAAGAA+AGG | + | chr6.3:15355966-15355985 | None:intergenic | 35.0% | |
| GGATTTGGAAAAGATGCAAT+TGG | - | chr6.3:15354660-15354679 | MS.gene47062:intron | 35.0% | |
| GGTTAGCAAAAATGTGTCTT+TGG | - | chr6.3:15355359-15355378 | MS.gene47062:CDS | 35.0% | |
| GTGGTAAAAAAAGTCATGCA+TGG | - | chr6.3:15355338-15355357 | MS.gene47062:CDS | 35.0% | |
| TACAAGACAATTGATGGAAG+AGG | - | chr6.3:15354849-15354868 | MS.gene47062:CDS | 35.0% | |
| TAGCAAAAATGTGTCTTTGG+AGG | - | chr6.3:15355362-15355381 | MS.gene47062:CDS | 35.0% | |
| TCTTTGTCTAATTGTCGTGA+TGG | - | chr6.3:15355077-15355096 | MS.gene47062:CDS | 35.0% | |
| TGATACTACTAAGAAAGGGT+TGG | + | chr6.3:15355961-15355980 | None:intergenic | 35.0% | |
| TGTTCATGATTGTGTTCCAA+CGG | - | chr6.3:15354947-15354966 | MS.gene47062:CDS | 35.0% | |
| TTTCTTAGTGCTTGTTTGGA+TGG | - | chr6.3:15355649-15355668 | MS.gene47062:intron | 35.0% | |
| TTTGGAAAAGATGCAATTGG+TGG | - | chr6.3:15354663-15354682 | MS.gene47062:intron | 35.0% | |
| ! | GATGCAATTGGTGGTAAAAA+TGG | - | chr6.3:15354672-15354691 | MS.gene47062:intron | 35.0% |
| ! | GCAATCCAATTGATGATTGT+TGG | - | chr6.3:15354583-15354602 | MS.gene47062:intron | 35.0% |
| ! | TGTCACTAGATGCATGTTTT+TGG | + | chr6.3:15353783-15353802 | None:intergenic | 35.0% |
| !! | ATCTACATTGTCACTGATTC+AGG | - | chr6.3:15354699-15354718 | MS.gene47062:intron | 35.0% |
| !! | TAGACATGGCTATTTTCATG+TGG | - | chr6.3:15356202-15356221 | MS.gene47062:intron | 35.0% |
| !!! | CTACCTTGTTTTTGGTTCAA+TGG | + | chr6.3:15355991-15356010 | None:intergenic | 35.0% |
| !!! | TTAGGTCTCTACCTTGTTTT+TGG | + | chr6.3:15355999-15356018 | None:intergenic | 35.0% |
| AAGCCAGGAACATTAAGGTA+TGG | - | chr6.3:15354744-15354763 | MS.gene47062:intron | 40.0% | |
| ACCTTAATGTTCCTGGCTTA+GGG | + | chr6.3:15354743-15354762 | None:intergenic | 40.0% | |
| AGAGATTCACCAGAACATAG+TGG | - | chr6.3:15354984-15355003 | MS.gene47062:CDS | 40.0% | |
| AGTGTTCACATTGCAAATGG+TGG | - | chr6.3:15354876-15354895 | MS.gene47062:CDS | 40.0% | |
| ATGCATACCTTGGCATTCTT+TGG | + | chr6.3:15355262-15355281 | None:intergenic | 40.0% | |
| CAAGGAAGTAACAAAGCATG+AGG | - | chr6.3:15356331-15356350 | MS.gene47062:intron | 40.0% | |
| CATTGCAGTTGGGAATAAGT+GGG | + | chr6.3:15355625-15355644 | None:intergenic | 40.0% | |
| CTAATATTTGTGTTCCCCGT+TGG | + | chr6.3:15354966-15354985 | None:intergenic | 40.0% | |
| GCTAGTGTTCACATTGCAAA+TGG | - | chr6.3:15354873-15354892 | MS.gene47062:CDS | 40.0% | |
| GCTCCATTGAACCAAAAACA+AGG | - | chr6.3:15355985-15356004 | MS.gene47062:intron | 40.0% | |
| GCTGATTGTGCAATTGGATT+TGG | - | chr6.3:15354645-15354664 | MS.gene47062:intron | 40.0% | |
| GGCTATTTATCATGTGGAAC+TGG | - | chr6.3:15354561-15354580 | MS.gene47062:intron | 40.0% | |
| GGGAAATGTATGCAATTGGA+GGG | - | chr6.3:15356246-15356265 | MS.gene47062:intron | 40.0% | |
| GTCCAAAATCCACTATGTTC+TGG | + | chr6.3:15354996-15355015 | None:intergenic | 40.0% | |
| GTTCATGATTGTGTTCCAAC+GGG | - | chr6.3:15354948-15354967 | MS.gene47062:CDS | 40.0% | |
| TACCTTAATGTTCCTGGCTT+AGG | + | chr6.3:15354744-15354763 | None:intergenic | 40.0% | |
| TCATTGCAGTTGGGAATAAG+TGG | + | chr6.3:15355626-15355645 | None:intergenic | 40.0% | |
| TCTAGGTCTAGGAGAAACTT+GGG | - | chr6.3:15354540-15354559 | MS.gene47062:intron | 40.0% | |
| TGGGAAATGTATGCAATTGG+AGG | - | chr6.3:15356245-15356264 | MS.gene47062:intron | 40.0% | |
| TTAGTGCTTGTTTGGATGGA+CGG | - | chr6.3:15355653-15355672 | MS.gene47062:intron | 40.0% | |
| TTCATGATTGTGTTCCAACG+GGG | - | chr6.3:15354949-15354968 | MS.gene47062:CDS | 40.0% | |
| TTGGAGATGTGACCCAAATT+GGG | - | chr6.3:15354602-15354621 | MS.gene47062:intron | 40.0% | |
| ! | AGACTAGCTGATTGTGCAAT+TGG | - | chr6.3:15354639-15354658 | MS.gene47062:intron | 40.0% |
| !! | CACAATCAGCTAGTCTTTGT+CGG | + | chr6.3:15354635-15354654 | None:intergenic | 40.0% |
| !! | GAGGGTGATTTGTTCTTGAA+TGG | - | chr6.3:15356395-15356414 | MS.gene47062:intron | 40.0% |
| !! | GGAGCATTCTTTAGAACAAC+TGG | - | chr6.3:15356416-15356435 | MS.gene47062:intron | 40.0% |
| !!! | CACCAGAACATAGTGGATTT+TGG | - | chr6.3:15354991-15355010 | MS.gene47062:CDS | 40.0% |
| AACCCTACAATCAACAGCCA+AGG | - | chr6.3:15356275-15356294 | MS.gene47062:intron | 45.0% | |
| ACCCTAAGCCAGGAACATTA+AGG | - | chr6.3:15354739-15354758 | MS.gene47062:intron | 45.0% | |
| ACCCTACAATCAACAGCCAA+GGG | - | chr6.3:15356276-15356295 | MS.gene47062:intron | 45.0% | |
| AGCTGGAATTGGAGATCAGA+GGG | - | chr6.3:15356377-15356396 | MS.gene47062:intron | 45.0% | |
| ATGTAGATATCCCCGCAAGT+GGG | - | chr6.3:15355837-15355856 | MS.gene47062:intron | 45.0% | |
| CACACCAGAAGTAGTAGTGA+TGG | + | chr6.3:15356510-15356529 | None:intergenic | 45.0% | |
| CGGGGATATCTACATAGATG+GGG | + | chr6.3:15355832-15355851 | None:intergenic | 45.0% | |
| CTCTAGGTCTAGGAGAAACT+TGG | - | chr6.3:15354539-15354558 | MS.gene47062:intron | 45.0% | |
| GACATAGTGCGTGTTTGGAA+TGG | + | chr6.3:15355810-15355829 | None:intergenic | 45.0% | |
| GCACCATACCTTAATGTTCC+TGG | + | chr6.3:15354750-15354769 | None:intergenic | 45.0% | |
| GCATCAATGTCTCTAGGTCT+AGG | - | chr6.3:15354529-15354548 | MS.gene47062:intron | 45.0% | |
| GCGGGGATATCTACATAGAT+GGG | + | chr6.3:15355833-15355852 | None:intergenic | 45.0% | |
| GGTTCCATCACTACTACTTC+TGG | - | chr6.3:15356503-15356522 | MS.gene47062:CDS | 45.0% | |
| GTCGGTTGTTCTCCCAATTT+GGG | + | chr6.3:15354617-15354636 | None:intergenic | 45.0% | |
| GTGCAAGAAATCTGTTCCCT+TGG | + | chr6.3:15356295-15356314 | None:intergenic | 45.0% | |
| GTTGGAGATGTGACCCAAAT+TGG | - | chr6.3:15354601-15354620 | MS.gene47062:intron | 45.0% | |
| TACACAAGACAAGGACATGC+AGG | - | chr6.3:15355199-15355218 | MS.gene47062:CDS | 45.0% | |
| TAGCTGGAATTGGAGATCAG+AGG | - | chr6.3:15356376-15356395 | MS.gene47062:intron | 45.0% | |
| TATGTAGATATCCCCGCAAG+TGG | - | chr6.3:15355836-15355855 | MS.gene47062:intron | 45.0% | |
| TGCGGGGATATCTACATAGA+TGG | + | chr6.3:15355834-15355853 | None:intergenic | 45.0% | |
| TGTTTATGGGTTCCCACTTG+CGG | + | chr6.3:15355852-15355871 | None:intergenic | 45.0% | |
| TTCAGGGTCTTGAACTGAAG+AGG | + | chr6.3:15353604-15353623 | None:intergenic | 45.0% | |
| ! | AGTGATGGAACCAACAAGAG+AGG | + | chr6.3:15356495-15356514 | None:intergenic | 45.0% |
| ! | GGATTTTGGACCGTTTCAGA+TGG | - | chr6.3:15355005-15355024 | MS.gene47062:CDS | 45.0% |
| ! | TCCCTTGGCTGTTGATTGTA+GGG | + | chr6.3:15356280-15356299 | None:intergenic | 45.0% |
| ! | TGTCGGTTGTTCTCCCAATT+TGG | + | chr6.3:15354618-15354637 | None:intergenic | 45.0% |
| ! | TTCCCTTGGCTGTTGATTGT+AGG | + | chr6.3:15356281-15356300 | None:intergenic | 45.0% |
| !! | GTAGGAGCATCAATGTCTCT+AGG | - | chr6.3:15354523-15354542 | MS.gene47062:intron | 45.0% |
| ATGGAACCAACAAGAGAGGC+TGG | + | chr6.3:15356491-15356510 | None:intergenic | 50.0% | |
| ATGGGGACATAGTGCGTGTT+TGG | + | chr6.3:15355815-15355834 | None:intergenic | 50.0% | |
| GATGCAGTAAACCCTAAGCC+AGG | - | chr6.3:15354729-15354748 | MS.gene47062:intron | 50.0% | |
| GGCTTGTCCAAAGAATGCCA+AGG | - | chr6.3:15355252-15355271 | MS.gene47062:CDS | 50.0% | |
| GGTGTGCTCTCTTGCAAGAA+GGG | - | chr6.3:15356524-15356543 | MS.gene47062:CDS | 50.0% | |
| GTTTATGGGTTCCCACTTGC+GGG | + | chr6.3:15355851-15355870 | None:intergenic | 50.0% | |
| TGGACCGTTTCAGATGGTGA+TGG | - | chr6.3:15355011-15355030 | MS.gene47062:CDS | 50.0% | |
| TGGTGTGCTCTCTTGCAAGA+AGG | - | chr6.3:15356523-15356542 | MS.gene47062:CDS | 50.0% | |
| TTTATGGGTTCCCACTTGCG+GGG | + | chr6.3:15355850-15355869 | None:intergenic | 50.0% | |
| GCAAGACCAGCCTCTCTTGT+TGG | - | chr6.3:15356482-15356501 | MS.gene47062:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 15353540 | 15356559 | 15353540 | ID=MS.gene47062 |
| chr6.3 | mRNA | 15353540 | 15356559 | 15353540 | ID=MS.gene47062.t1;Parent=MS.gene47062 |
| chr6.3 | exon | 15356453 | 15356559 | 15356453 | ID=MS.gene47062.t1.exon1;Parent=MS.gene47062.t1 |
| chr6.3 | CDS | 15356453 | 15356559 | 15356453 | ID=cds.MS.gene47062.t1;Parent=MS.gene47062.t1 |
| chr6.3 | exon | 15354826 | 15355572 | 15354826 | ID=MS.gene47062.t1.exon2;Parent=MS.gene47062.t1 |
| chr6.3 | CDS | 15354826 | 15355572 | 15354826 | ID=cds.MS.gene47062.t1;Parent=MS.gene47062.t1 |
| chr6.3 | exon | 15353540 | 15353900 | 15353540 | ID=MS.gene47062.t1.exon3;Parent=MS.gene47062.t1 |
| chr6.3 | CDS | 15353540 | 15353900 | 15353540 | ID=cds.MS.gene47062.t1;Parent=MS.gene47062.t1 |
| Gene Sequence |
| Protein sequence |
