Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47376.t1 | XP_024633754.1 | 69.3 | 420 | 59 | 3 | 55 | 404 | 459 | 878 | 5.80E-136 | 494.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47376.t1 | A0A396JS83 | 69.3 | 420 | 59 | 3 | 55 | 404 | 459 | 878 | 4.2e-136 | 494.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058773 | MS.gene47376 | 0.811882 | 5.61E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 120 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATACAAGTAATGGAAAT+TGG | 0.185502 | 1.4:+50899263 | None:intergenic |
| CCTTGTGTTCCTTGAAATCC+TGG | 0.250219 | 1.4:+50899112 | None:intergenic |
| TTGTAGAACCTCAACCAAAT+TGG | 0.252973 | 1.4:+50897842 | None:intergenic |
| TAGGGAGTTGGTTCCCAATT+TGG | 0.269466 | 1.4:-50897856 | MS.gene47376:CDS |
| GACTGTATGGCAAAGTTTAT+TGG | 0.301242 | 1.4:-50898516 | MS.gene47376:CDS |
| TTAGGATGACTAGACTTTAA+TGG | 0.313659 | 1.4:+50899085 | None:intergenic |
| TTGCCCTATCGTCATCATTT+AGG | 0.327091 | 1.4:+50898786 | None:intergenic |
| ATCTCAGCGTCCGCCTTATC+AGG | 0.352764 | 1.4:-50899059 | MS.gene47376:CDS |
| TTGAGGGAAGTTCGTCTTAA+GGG | 0.355793 | 1.4:-50898563 | MS.gene47376:CDS |
| AGTAATGGAAATTGGGTAGA+TGG | 0.384566 | 1.4:+50899271 | None:intergenic |
| TACGTGTTGCGTTGTGTTGA+TGG | 0.386656 | 1.4:+50898400 | None:intergenic |
| GGCCCCTTTCTTGTAGTTGA+CGG | 0.387502 | 1.4:+50897932 | None:intergenic |
| TGTAGAACCTCAACCAAATT+GGG | 0.399007 | 1.4:+50897843 | None:intergenic |
| CATGAGTCTTAATATTCCTT+TGG | 0.400784 | 1.4:-50897910 | MS.gene47376:CDS |
| GTTGAGGGAAGTTCGTCTTA+AGG | 0.412066 | 1.4:-50898564 | MS.gene47376:CDS |
| GGCAAAGTTTATTGGAGCAT+TGG | 0.431611 | 1.4:-50898508 | MS.gene47376:CDS |
| ACCACTTGTTCGGGTGTAGT+TGG | 0.436086 | 1.4:-50897987 | MS.gene47376:CDS |
| GTTCCTTGAAATCCTGGGTT+GGG | 0.437913 | 1.4:+50899118 | None:intergenic |
| TGTTCCTTGAAATCCTGGGT+TGG | 0.444757 | 1.4:+50899117 | None:intergenic |
| ATTGGATAGGTGAGACTGTA+TGG | 0.449490 | 1.4:-50898529 | MS.gene47376:CDS |
| ATATACAAGTAATGGAAATT+GGG | 0.451555 | 1.4:+50899264 | None:intergenic |
| ATGCCCAACCCAGGATTTCA+AGG | 0.458880 | 1.4:-50899121 | MS.gene47376:CDS |
| GTTGGTTCCCAATTTGGTTG+AGG | 0.463056 | 1.4:-50897850 | MS.gene47376:CDS |
| CTTGTGTTCCTTGAAATCCT+GGG | 0.463860 | 1.4:+50899113 | None:intergenic |
| TTCTGATCATGAGTCTACTT+TGG | 0.468251 | 1.4:-50897607 | MS.gene47376:CDS |
| GGGATTAACATGTTTGATGA+TGG | 0.472319 | 1.4:-50899007 | MS.gene47376:CDS |
| TTCACAGACTTACCCTTTGG+TGG | 0.473658 | 1.4:+50898964 | None:intergenic |
| CCATCTTGACCAGCCTGATA+AGG | 0.480953 | 1.4:+50899046 | None:intergenic |
| AACCAACTCCCTACCACTAC+AGG | 0.484892 | 1.4:+50897866 | None:intergenic |
| AGAAACATGGCATCAAAGAA+AGG | 0.485403 | 1.4:-50898446 | MS.gene47376:CDS |
| TGATCATGAGTCTACTTTGG+TGG | 0.485914 | 1.4:-50897604 | MS.gene47376:CDS |
| GAAACATGGCATCAAAGAAA+GGG | 0.487800 | 1.4:-50898445 | MS.gene47376:CDS |
| TTGAAATCCTGGGTTGGGCA+TGG | 0.490031 | 1.4:+50899123 | None:intergenic |
| ATGCCGTCAACTACAAGAAA+GGG | 0.493045 | 1.4:-50897935 | MS.gene47376:CDS |
| TGCGGTGGATATACAAGTAA+TGG | 0.493457 | 1.4:+50899256 | None:intergenic |
| AACGCAACACGTAACTCAAA+TGG | 0.500116 | 1.4:-50898390 | MS.gene47376:intron |
| GATCATGAGTCTACTTTGGT+GGG | 0.501918 | 1.4:-50897603 | MS.gene47376:CDS |
| AGCCTGTAGTGGTAGGGAGT+TGG | 0.512995 | 1.4:-50897868 | MS.gene47376:CDS |
| GATCAGAAGGTTGGAGGCGG+CGG | 0.513611 | 1.4:+50897622 | None:intergenic |
| TAGACTCATGATCAGAAGGT+TGG | 0.515338 | 1.4:+50897613 | None:intergenic |
| CAAAGGAATATTAAGACTCA+TGG | 0.516583 | 1.4:+50897911 | None:intergenic |
| GTGTAGTTGGAGGTAAGAAA+AGG | 0.517698 | 1.4:-50897974 | MS.gene47376:CDS |
| AAAAGCCACAGACAAAATGT+AGG | 0.518392 | 1.4:-50898817 | MS.gene47376:CDS |
| CATCGTTAGCCTGTAGTGGT+AGG | 0.519129 | 1.4:-50897875 | MS.gene47376:CDS |
| TTGCTGAAGAAACGGACAGA+GGG | 0.522070 | 1.4:-50897744 | MS.gene47376:CDS |
| GGAGGCGGCGGTGACGTCCA+TGG | 0.522976 | 1.4:+50897634 | None:intergenic |
| CAGACTTACCCTTTGGTGGA+AGG | 0.526125 | 1.4:+50898968 | None:intergenic |
| CAGCGTCCGCCTTATCAGGC+TGG | 0.530739 | 1.4:-50899055 | MS.gene47376:CDS |
| CCACTTGATAGTGGATATGT+AGG | 0.532942 | 1.4:+50899175 | None:intergenic |
| TGTGAAGGTCCACTTGATAG+TGG | 0.533328 | 1.4:+50899166 | None:intergenic |
| AAATTATTCGCTCAAGACCA+TGG | 0.535708 | 1.4:-50897651 | MS.gene47376:CDS |
| GACTGAGAACGGGTAGGTGG+AGG | 0.537395 | 1.4:+50899295 | None:intergenic |
| TGATAAGGCGGACGCTGAGA+TGG | 0.537853 | 1.4:+50899061 | None:intergenic |
| GATGCCGTCAACTACAAGAA+AGG | 0.540009 | 1.4:-50897936 | MS.gene47376:CDS |
| CTACACCCGAACAAGTGGTA+AGG | 0.540049 | 1.4:+50897991 | None:intergenic |
| TTATTCAACCTTCCACCAAA+GGG | 0.545420 | 1.4:-50898976 | MS.gene47376:intron |
| ACTTGTTCGGGTGTAGTTGG+AGG | 0.547278 | 1.4:-50897984 | MS.gene47376:CDS |
| CCTTATCAGGCTGGTCAAGA+TGG | 0.548609 | 1.4:-50899046 | MS.gene47376:CDS |
| GGCGGACGCTGAGATGGCTT+AGG | 0.550526 | 1.4:+50899067 | None:intergenic |
| GTGACCTAAATGATGACGAT+AGG | 0.557016 | 1.4:-50898790 | MS.gene47376:CDS |
| AAGATCCTGTTCGAAAACTA+CGG | 0.557292 | 1.4:-50897800 | MS.gene47376:CDS |
| GTTATTCAACCTTCCACCAA+AGG | 0.563686 | 1.4:-50898977 | MS.gene47376:CDS |
| TTTAGTTCCATGCCCAACCC+AGG | 0.569175 | 1.4:-50899130 | MS.gene47376:CDS |
| GGTAGATGGAGACTGAGAAC+GGG | 0.569951 | 1.4:+50899285 | None:intergenic |
| GGCAATCAAGACGTTGATGT+TGG | 0.570273 | 1.4:-50897582 | MS.gene47376:CDS |
| TCCAACTACACCCGAACAAG+TGG | 0.570300 | 1.4:+50897986 | None:intergenic |
| GGGTAGATGGAGACTGAGAA+CGG | 0.570642 | 1.4:+50899284 | None:intergenic |
| AAATACAGGAGAAGTGTACA+TGG | 0.571389 | 1.4:-50898655 | MS.gene47376:intron |
| ATCGTTAGCCTGTAGTGGTA+GGG | 0.576808 | 1.4:-50897874 | MS.gene47376:CDS |
| GGTCAGTGCCCACATTGGAT+AGG | 0.579187 | 1.4:-50898542 | MS.gene47376:CDS |
| TACACCCGAACAAGTGGTAA+GGG | 0.579884 | 1.4:+50897992 | None:intergenic |
| ACTCATGATCAGAAGGTTGG+AGG | 0.581322 | 1.4:+50897616 | None:intergenic |
| AAAGCCACAGACAAAATGTA+GGG | 0.582116 | 1.4:-50898816 | MS.gene47376:CDS |
| ACCGCATACATATGCACCAC+CGG | 0.582783 | 1.4:-50899239 | MS.gene47376:CDS |
| TATGTAGGTGTTGGATATGT+CGG | 0.584602 | 1.4:+50899190 | None:intergenic |
| CACCCGAACAAGTGGTAAGG+GGG | 0.585944 | 1.4:+50897994 | None:intergenic |
| TGACCTAAATGATGACGATA+GGG | 0.586015 | 1.4:-50898789 | MS.gene47376:CDS |
| TGACTTGTCTGATATGTTGA+GGG | 0.587957 | 1.4:-50898579 | MS.gene47376:CDS |
| CCAGGATTTCAAGGAACACA+AGG | 0.592183 | 1.4:-50899112 | MS.gene47376:CDS |
| GTCGGCGGTGCGGATGTCGA+CGG | 0.593551 | 1.4:+50899208 | None:intergenic |
| CCACAGACAAAATGTAGGGA+TGG | 0.598675 | 1.4:-50898812 | MS.gene47376:CDS |
| AAAGTAGACTCATGATCAGA+AGG | 0.598945 | 1.4:+50897609 | None:intergenic |
| GGGGAAAGCCTACAGAAAAG+AGG | 0.602123 | 1.4:-50898425 | MS.gene47376:CDS |
| GGAGACTGAGAACGGGTAGG+TGG | 0.602886 | 1.4:+50899292 | None:intergenic |
| AGATGGCATTCATGATGCTG+AGG | 0.604447 | 1.4:-50899029 | MS.gene47376:CDS |
| GATGGCATTCATGATGCTGA+GGG | 0.610481 | 1.4:-50899028 | MS.gene47376:CDS |
| CATGATCAGAAGGTTGGAGG+CGG | 0.613383 | 1.4:+50897619 | None:intergenic |
| CCTACATATCCACTATCAAG+TGG | 0.613583 | 1.4:-50899175 | MS.gene47376:CDS |
| TTGGTGCCGATGATGAATGA+TGG | 0.617362 | 1.4:-50897563 | None:intergenic |
| GATAGTGGATATGTAGGTGT+TGG | 0.619025 | 1.4:+50899181 | None:intergenic |
| GAAGCACCATCATTCATCAT+CGG | 0.619327 | 1.4:+50897557 | None:intergenic |
| GATGCTCTTGCATTATCCAA+AGG | 0.620366 | 1.4:+50897894 | None:intergenic |
| ACACCCGAACAAGTGGTAAG+GGG | 0.633338 | 1.4:+50897993 | None:intergenic |
| AGAGCATCGTTAGCCTGTAG+TGG | 0.637169 | 1.4:-50897879 | MS.gene47376:CDS |
| AAACATGGCATCAAAGAAAG+GGG | 0.640330 | 1.4:-50898444 | MS.gene47376:CDS |
| TCTTGACCAGCCTGATAAGG+CGG | 0.640440 | 1.4:+50899049 | None:intergenic |
| TTAAGGGTCAGTGCCCACAT+TGG | 0.648200 | 1.4:-50898547 | MS.gene47376:CDS |
| CAGTCTCACCTATCCAATGT+GGG | 0.650425 | 1.4:+50898534 | None:intergenic |
| ACAGTCTCACCTATCCAATG+TGG | 0.653828 | 1.4:+50898533 | None:intergenic |
| GTGACTTGTCTGATATGTTG+AGG | 0.654751 | 1.4:-50898580 | MS.gene47376:CDS |
| TGCTGAAGAAACGGACAGAG+GGG | 0.654920 | 1.4:-50897743 | MS.gene47376:CDS |
| ATCAAGTGGACCTTCACACA+AGG | 0.664485 | 1.4:-50899161 | MS.gene47376:CDS |
| GTCGACGGTGTATACGCCGG+TGG | 0.665297 | 1.4:+50899223 | None:intergenic |
| ACCCGAACAAGTGGTAAGGG+GGG | 0.667715 | 1.4:+50897995 | None:intergenic |
| AAAGATTATGAATTCGCAGG+GGG | 0.672074 | 1.4:-50897769 | MS.gene47376:CDS |
| TGCCGTCAACTACAAGAAAG+GGG | 0.675987 | 1.4:-50897934 | MS.gene47376:CDS |
| GATGTCGACGGTGTATACGC+CGG | 0.677914 | 1.4:+50899220 | None:intergenic |
| TTGGGCATGGAACTAAATTG+TGG | 0.681887 | 1.4:+50899136 | None:intergenic |
| TGCCAGAGAAAAGAGAAACA+TGG | 0.684012 | 1.4:-50898459 | MS.gene47376:CDS |
| ATAGGTCAACTGAAAACTAG+CGG | 0.685932 | 1.4:+50898481 | None:intergenic |
| GATGGAGACTGAGAACGGGT+AGG | 0.689290 | 1.4:+50899289 | None:intergenic |
| ATTGCTGAAGAAACGGACAG+AGG | 0.696753 | 1.4:-50897745 | MS.gene47376:CDS |
| AATTGTGGTACCTTGTGTGA+AGG | 0.703679 | 1.4:+50899151 | None:intergenic |
| AAAAGATTATGAATTCGCAG+GGG | 0.706642 | 1.4:-50897770 | MS.gene47376:CDS |
| CATATCAGACAAGTCACGCG+AGG | 0.709129 | 1.4:+50898586 | None:intergenic |
| ATGGCATTCATGATGCTGAG+GGG | 0.723530 | 1.4:-50899027 | MS.gene47376:CDS |
| GTAGGTGTTGGATATGTCGG+CGG | 0.725546 | 1.4:+50899193 | None:intergenic |
| GGTGGTGCATATGTATGCGG+TGG | 0.727513 | 1.4:+50899241 | None:intergenic |
| GCCGGTGGTGCATATGTATG+CGG | 0.731075 | 1.4:+50899238 | None:intergenic |
| TGTTGGATATGTCGGCGGTG+CGG | 0.734289 | 1.4:+50899198 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATGTTATATAAAAAATAC+AGG | - | chr1.4:50898192-50898211 | MS.gene47376:intron | 10.0% |
| !!! | AGTTCTTCTTTATTTATTTT+GGG | - | chr1.4:50898508-50898527 | MS.gene47376:CDS | 15.0% |
| !!! | TAGTTCTTCTTTATTTATTT+TGG | - | chr1.4:50898507-50898526 | MS.gene47376:CDS | 15.0% |
| !!! | TTTGTATTGATTTATTAACA+TGG | - | chr1.4:50897952-50897971 | MS.gene47376:CDS | 15.0% |
| !! | AAATAAAGAAGAACTAGTTA+AGG | + | chr1.4:50898503-50898522 | None:intergenic | 20.0% |
| !! | TTATTAACATGGTATTGTTA+AGG | - | chr1.4:50897963-50897982 | MS.gene47376:CDS | 20.0% |
| !! | TTTGTATGGTTATTCATTAT+AGG | - | chr1.4:50898753-50898772 | MS.gene47376:intron | 20.0% |
| !!! | ATATACAAGTAATGGAAATT+GGG | + | chr1.4:50897600-50897619 | None:intergenic | 20.0% |
| ! | AAAAAAGATTATGAATTCGC+AGG | - | chr1.4:50899089-50899108 | MS.gene47376:CDS | 25.0% |
| ! | AAAAAGATTATGAATTCGCA+GGG | - | chr1.4:50899090-50899109 | MS.gene47376:CDS | 25.0% |
| !! | GATATACAAGTAATGGAAAT+TGG | + | chr1.4:50897601-50897620 | None:intergenic | 25.0% |
| !!! | TTGTTATTTGACTCTTTGTA+TGG | - | chr1.4:50898739-50898758 | MS.gene47376:intron | 25.0% |
| AAAAGATTATGAATTCGCAG+GGG | - | chr1.4:50899091-50899110 | MS.gene47376:CDS | 30.0% | |
| CAAAGGAATATTAAGACTCA+TGG | + | chr1.4:50898953-50898972 | None:intergenic | 30.0% | |
| CATGAGTCTTAATATTCCTT+TGG | - | chr1.4:50898951-50898970 | MS.gene47376:intron | 30.0% | |
| TTAGGATGACTAGACTTTAA+TGG | + | chr1.4:50897779-50897798 | None:intergenic | 30.0% | |
| ! | TTACCTGATTCTTTCTAGAA+TGG | + | chr1.4:50898664-50898683 | None:intergenic | 30.0% |
| AAAAGCCACAGACAAAATGT+AGG | - | chr1.4:50898044-50898063 | MS.gene47376:intron | 35.0% | |
| AAACATGGCATCAAAGAAAG+GGG | - | chr1.4:50898417-50898436 | MS.gene47376:CDS | 35.0% | |
| AAAGATTATGAATTCGCAGG+GGG | - | chr1.4:50899092-50899111 | MS.gene47376:CDS | 35.0% | |
| AAAGCCACAGACAAAATGTA+GGG | - | chr1.4:50898045-50898064 | MS.gene47376:intron | 35.0% | |
| AAAGTAGACTCATGATCAGA+AGG | + | chr1.4:50899255-50899274 | None:intergenic | 35.0% | |
| AAATTATTCGCTCAAGACCA+TGG | - | chr1.4:50899210-50899229 | MS.gene47376:CDS | 35.0% | |
| AAGATCCTGTTCGAAAACTA+CGG | - | chr1.4:50899061-50899080 | MS.gene47376:CDS | 35.0% | |
| ACGTCTGCAAAAAATGAAAG+AGG | - | chr1.4:50899158-50899177 | MS.gene47376:CDS | 35.0% | |
| AGAAACATGGCATCAAAGAA+AGG | - | chr1.4:50898415-50898434 | MS.gene47376:CDS | 35.0% | |
| ATAGGTCAACTGAAAACTAG+CGG | + | chr1.4:50898383-50898402 | None:intergenic | 35.0% | |
| CGATAGGGCAAAAAAATTCA+AGG | - | chr1.4:50898087-50898106 | MS.gene47376:intron | 35.0% | |
| GAAACATGGCATCAAAGAAA+GGG | - | chr1.4:50898416-50898435 | MS.gene47376:CDS | 35.0% | |
| GACTGTATGGCAAAGTTTAT+TGG | - | chr1.4:50898345-50898364 | MS.gene47376:intron | 35.0% | |
| GGGATTAACATGTTTGATGA+TGG | - | chr1.4:50897854-50897873 | MS.gene47376:CDS | 35.0% | |
| TAAGGATACTCAGATCATGA+AGG | - | chr1.4:50898616-50898635 | MS.gene47376:CDS | 35.0% | |
| TAATTCACAGACTTACCCTT+TGG | + | chr1.4:50897903-50897922 | None:intergenic | 35.0% | |
| TATAGACTAAGAAGTCCAAG+AGG | - | chr1.4:50898570-50898589 | MS.gene47376:CDS | 35.0% | |
| TGTAGAACCTCAACCAAATT+GGG | + | chr1.4:50899021-50899040 | None:intergenic | 35.0% | |
| TTATTCAACCTTCCACCAAA+GGG | - | chr1.4:50897885-50897904 | MS.gene47376:CDS | 35.0% | |
| TTCTGATCATGAGTCTACTT+TGG | - | chr1.4:50899254-50899273 | MS.gene47376:CDS | 35.0% | |
| TTGTAGAACCTCAACCAAAT+TGG | + | chr1.4:50899022-50899041 | None:intergenic | 35.0% | |
| ! | AAATACAGGAGAAGTGTACA+TGG | - | chr1.4:50898206-50898225 | MS.gene47376:intron | 35.0% |
| ! | AGTAATGGAAATTGGGTAGA+TGG | + | chr1.4:50897593-50897612 | None:intergenic | 35.0% |
| ! | TGACCATTCTAGAAAGAATC+AGG | - | chr1.4:50898658-50898677 | MS.gene47376:intron | 35.0% |
| ! | TGACCTAAATGATGACGATA+GGG | - | chr1.4:50898072-50898091 | MS.gene47376:intron | 35.0% |
| ! | TGACTTGTCTGATATGTTGA+GGG | - | chr1.4:50898282-50898301 | MS.gene47376:intron | 35.0% |
| ! | TGTCTGTGGCTTTTTATGTT+GGG | + | chr1.4:50898038-50898057 | None:intergenic | 35.0% |
| ! | TTCATTATAGGAGAAGTGTG+AGG | - | chr1.4:50898765-50898784 | MS.gene47376:intron | 35.0% |
| ! | TTGTCTGTGGCTTTTTATGT+TGG | + | chr1.4:50898039-50898058 | None:intergenic | 35.0% |
| !! | TATGTAGGTGTTGGATATGT+CGG | + | chr1.4:50897674-50897693 | None:intergenic | 35.0% |
| AACGCAACACGTAACTCAAA+TGG | - | chr1.4:50898471-50898490 | MS.gene47376:CDS | 40.0% | |
| AAGAGGAGTTCAAACGTGAA+CGG | - | chr1.4:50898587-50898606 | MS.gene47376:CDS | 40.0% | |
| AATTGTGGTACCTTGTGTGA+AGG | + | chr1.4:50897713-50897732 | None:intergenic | 40.0% | |
| ACTCAGATCATGAAGGAAAC+TGG | - | chr1.4:50898623-50898642 | MS.gene47376:CDS | 40.0% | |
| ATGCCGTCAACTACAAGAAA+GGG | - | chr1.4:50898926-50898945 | MS.gene47376:intron | 40.0% | |
| ATTGGATAGGTGAGACTGTA+TGG | - | chr1.4:50898332-50898351 | MS.gene47376:intron | 40.0% | |
| CCTACATATCCACTATCAAG+TGG | - | chr1.4:50897686-50897705 | MS.gene47376:CDS | 40.0% | |
| CTTGTGTTCCTTGAAATCCT+GGG | + | chr1.4:50897751-50897770 | None:intergenic | 40.0% | |
| GATCATGAGTCTACTTTGGT+GGG | - | chr1.4:50899258-50899277 | MS.gene47376:CDS | 40.0% | |
| GATGCTCTTGCATTATCCAA+AGG | + | chr1.4:50898970-50898989 | None:intergenic | 40.0% | |
| GGCAAAGTTTATTGGAGCAT+TGG | - | chr1.4:50898353-50898372 | MS.gene47376:intron | 40.0% | |
| GTGTAGTTGGAGGTAAGAAA+AGG | - | chr1.4:50898887-50898906 | MS.gene47376:intron | 40.0% | |
| GTTATTCAACCTTCCACCAA+AGG | - | chr1.4:50897884-50897903 | MS.gene47376:CDS | 40.0% | |
| TAGACTCATGATCAGAAGGT+TGG | + | chr1.4:50899251-50899270 | None:intergenic | 40.0% | |
| TATGAGTTGTAACCCTGCTA+AGG | - | chr1.4:50898834-50898853 | MS.gene47376:CDS | 40.0% | |
| TGATCATGAGTCTACTTTGG+TGG | - | chr1.4:50899257-50899276 | MS.gene47376:CDS | 40.0% | |
| TGCCAGAGAAAAGAGAAACA+TGG | - | chr1.4:50898402-50898421 | MS.gene47376:CDS | 40.0% | |
| TGCGGTGGATATACAAGTAA+TGG | + | chr1.4:50897608-50897627 | None:intergenic | 40.0% | |
| TTGAGGGAAGTTCGTCTTAA+GGG | - | chr1.4:50898298-50898317 | MS.gene47376:intron | 40.0% | |
| TTGCCCTATCGTCATCATTT+AGG | + | chr1.4:50898078-50898097 | None:intergenic | 40.0% | |
| TTGGGCATGGAACTAAATTG+TGG | + | chr1.4:50897728-50897747 | None:intergenic | 40.0% | |
| ! | AGTTTCCGTAGTTTTCGAAC+AGG | + | chr1.4:50899069-50899088 | None:intergenic | 40.0% |
| ! | GCTGAAATGCTTTTCGTCTT+CGG | + | chr1.4:50898004-50898023 | None:intergenic | 40.0% |
| ! | GTGACCTAAATGATGACGAT+AGG | - | chr1.4:50898071-50898090 | MS.gene47376:intron | 40.0% |
| ! | GTGACTTGTCTGATATGTTG+AGG | - | chr1.4:50898281-50898300 | MS.gene47376:intron | 40.0% |
| ! | GTTTCTCTTTTCTCTGGCAT+AGG | + | chr1.4:50898401-50898420 | None:intergenic | 40.0% |
| ! | TGATGGAACCTCTTTTCTGT+AGG | + | chr1.4:50898447-50898466 | None:intergenic | 40.0% |
| ! | TGCCATGTTTCTCTTTTCTC+TGG | + | chr1.4:50898407-50898426 | None:intergenic | 40.0% |
| !! | CCACTTGATAGTGGATATGT+AGG | + | chr1.4:50897689-50897708 | None:intergenic | 40.0% |
| !! | GATAGTGGATATGTAGGTGT+TGG | + | chr1.4:50897683-50897702 | None:intergenic | 40.0% |
| ACAGTCTCACCTATCCAATG+TGG | + | chr1.4:50898331-50898350 | None:intergenic | 45.0% | |
| ACTCATGATCAGAAGGTTGG+AGG | + | chr1.4:50899248-50899267 | None:intergenic | 45.0% | |
| AGAGGAGTTCAAACGTGAAC+GGG | - | chr1.4:50898588-50898607 | MS.gene47376:CDS | 45.0% | |
| AGATGGCATTCATGATGCTG+AGG | - | chr1.4:50897832-50897851 | MS.gene47376:CDS | 45.0% | |
| AGGGGGAATTGCTGAAGAAA+CGG | - | chr1.4:50899109-50899128 | MS.gene47376:CDS | 45.0% | |
| ATCAAGTGGACCTTCACACA+AGG | - | chr1.4:50897700-50897719 | MS.gene47376:CDS | 45.0% | |
| ATGGCATTCATGATGCTGAG+GGG | - | chr1.4:50897834-50897853 | MS.gene47376:CDS | 45.0% | |
| ATTGCTGAAGAAACGGACAG+AGG | - | chr1.4:50899116-50899135 | MS.gene47376:CDS | 45.0% | |
| CAGTCTCACCTATCCAATGT+GGG | + | chr1.4:50898330-50898349 | None:intergenic | 45.0% | |
| CCACAGACAAAATGTAGGGA+TGG | - | chr1.4:50898049-50898068 | MS.gene47376:intron | 45.0% | |
| CCAGGATTTCAAGGAACACA+AGG | - | chr1.4:50897749-50897768 | MS.gene47376:CDS | 45.0% | |
| CCTTGTGTTCCTTGAAATCC+TGG | + | chr1.4:50897752-50897771 | None:intergenic | 45.0% | |
| GATGCCGTCAACTACAAGAA+AGG | - | chr1.4:50898925-50898944 | MS.gene47376:intron | 45.0% | |
| GATGGCATTCATGATGCTGA+GGG | - | chr1.4:50897833-50897852 | MS.gene47376:CDS | 45.0% | |
| GCAGGGTTACAACTCATAGA+TGG | + | chr1.4:50898832-50898851 | None:intergenic | 45.0% | |
| GGCAATCAAGACGTTGATGT+TGG | - | chr1.4:50899279-50899298 | MS.gene47376:CDS | 45.0% | |
| GTTCACGTTTGAACTCCTCT+TGG | + | chr1.4:50898588-50898607 | None:intergenic | 45.0% | |
| GTTCCTTGAAATCCTGGGTT+GGG | + | chr1.4:50897746-50897765 | None:intergenic | 45.0% | |
| GTTGAGGGAAGTTCGTCTTA+AGG | - | chr1.4:50898297-50898316 | MS.gene47376:intron | 45.0% | |
| TACACCCGAACAAGTGGTAA+GGG | + | chr1.4:50898872-50898891 | None:intergenic | 45.0% | |
| TACGTGTTGCGTTGTGTTGA+TGG | + | chr1.4:50898464-50898483 | None:intergenic | 45.0% | |
| TGCCGTCAACTACAAGAAAG+GGG | - | chr1.4:50898927-50898946 | MS.gene47376:intron | 45.0% | |
| TGTGAAGGTCCACTTGATAG+TGG | + | chr1.4:50897698-50897717 | None:intergenic | 45.0% | |
| TGTTCCTTGAAATCCTGGGT+TGG | + | chr1.4:50897747-50897766 | None:intergenic | 45.0% | |
| TTCACAGACTTACCCTTTGG+TGG | + | chr1.4:50897900-50897919 | None:intergenic | 45.0% | |
| TTGCTGAAGAAACGGACAGA+GGG | - | chr1.4:50899117-50899136 | MS.gene47376:CDS | 45.0% | |
| ! | AAACGTGAACGGGCTTCATA+AGG | - | chr1.4:50898598-50898617 | MS.gene47376:CDS | 45.0% |
| ! | ATCGTTAGCCTGTAGTGGTA+GGG | - | chr1.4:50898987-50899006 | MS.gene47376:CDS | 45.0% |
| ! | CCATCCCTACATTTTGTCTG+TGG | + | chr1.4:50898052-50898071 | None:intergenic | 45.0% |
| ! | GTTGGTTCCCAATTTGGTTG+AGG | - | chr1.4:50899011-50899030 | MS.gene47376:CDS | 45.0% |
| ! | TAGGGAGTTGGTTCCCAATT+TGG | - | chr1.4:50899005-50899024 | MS.gene47376:CDS | 45.0% |
| !! | CTTTTCGTCTTCGGCTTTGA+AGG | + | chr1.4:50897995-50898014 | None:intergenic | 45.0% |
| !! | TATATAACATAAAATATAAT+AGG | + | chr1.4:50898184-50898203 | None:intergenic | 5.0% |
| AACCAACTCCCTACCACTAC+AGG | + | chr1.4:50898998-50899017 | None:intergenic | 50.0% | |
| ACACCCGAACAAGTGGTAAG+GGG | + | chr1.4:50898871-50898890 | None:intergenic | 50.0% | |
| ACCACTTGTTCGGGTGTAGT+TGG | - | chr1.4:50898874-50898893 | MS.gene47376:CDS | 50.0% | |
| ACCGCATACATATGCACCAC+CGG | - | chr1.4:50897622-50897641 | MS.gene47376:CDS | 50.0% | |
| ACTTGTTCGGGTGTAGTTGG+AGG | - | chr1.4:50898877-50898896 | MS.gene47376:CDS | 50.0% | |
| ATGCCCAACCCAGGATTTCA+AGG | - | chr1.4:50897740-50897759 | MS.gene47376:CDS | 50.0% | |
| CAGACTTACCCTTTGGTGGA+AGG | + | chr1.4:50897896-50897915 | None:intergenic | 50.0% | |
| CATATCAGACAAGTCACGCG+AGG | + | chr1.4:50898278-50898297 | None:intergenic | 50.0% | |
| CATGATCAGAAGGTTGGAGG+CGG | + | chr1.4:50899245-50899264 | None:intergenic | 50.0% | |
| CCATCTTGACCAGCCTGATA+AGG | + | chr1.4:50897818-50897837 | None:intergenic | 50.0% | |
| CTACACCCGAACAAGTGGTA+AGG | + | chr1.4:50898873-50898892 | None:intergenic | 50.0% | |
| GGCCCCTTTCTTGTAGTTGA+CGG | + | chr1.4:50898932-50898951 | None:intergenic | 50.0% | |
| GGGCAACAACATCCTTAGCA+GGG | + | chr1.4:50898849-50898868 | None:intergenic | 50.0% | |
| GGGGAAAGCCTACAGAAAAG+AGG | - | chr1.4:50898436-50898455 | MS.gene47376:CDS | 50.0% | |
| GGGTAGATGGAGACTGAGAA+CGG | + | chr1.4:50897580-50897599 | None:intergenic | 50.0% | |
| GGTAGATGGAGACTGAGAAC+GGG | + | chr1.4:50897579-50897598 | None:intergenic | 50.0% | |
| TCCAACTACACCCGAACAAG+TGG | + | chr1.4:50898878-50898897 | None:intergenic | 50.0% | |
| TCTTGACCAGCCTGATAAGG+CGG | + | chr1.4:50897815-50897834 | None:intergenic | 50.0% | |
| TGCTGAAGAAACGGACAGAG+GGG | - | chr1.4:50899118-50899137 | MS.gene47376:CDS | 50.0% | |
| TTAAGGGTCAGTGCCCACAT+TGG | - | chr1.4:50898314-50898333 | MS.gene47376:intron | 50.0% | |
| ! | CATCGTTAGCCTGTAGTGGT+AGG | - | chr1.4:50898986-50899005 | MS.gene47376:CDS | 50.0% |
| ! | CCTTATCAGGCTGGTCAAGA+TGG | - | chr1.4:50897815-50897834 | MS.gene47376:CDS | 50.0% |
| ! | TATAGGAGAAGTGTGAGGCG+AGG | - | chr1.4:50898770-50898789 | MS.gene47376:CDS | 50.0% |
| ! | TTGAAATCCTGGGTTGGGCA+TGG | + | chr1.4:50897741-50897760 | None:intergenic | 50.0% |
| ! | TTTAGTTCCATGCCCAACCC+AGG | - | chr1.4:50897731-50897750 | MS.gene47376:CDS | 50.0% |
| !! | AGAGCATCGTTAGCCTGTAG+TGG | - | chr1.4:50898982-50899001 | MS.gene47376:CDS | 50.0% |
| !! | GTAGGTGTTGGATATGTCGG+CGG | + | chr1.4:50897671-50897690 | None:intergenic | 50.0% |
| ACCCGAACAAGTGGTAAGGG+GGG | + | chr1.4:50898869-50898888 | None:intergenic | 55.0% | |
| AGCCTGTAGTGGTAGGGAGT+TGG | - | chr1.4:50898993-50899012 | MS.gene47376:CDS | 55.0% | |
| ATCTCAGCGTCCGCCTTATC+AGG | - | chr1.4:50897802-50897821 | MS.gene47376:CDS | 55.0% | |
| CACCCGAACAAGTGGTAAGG+GGG | + | chr1.4:50898870-50898889 | None:intergenic | 55.0% | |
| GATGGAGACTGAGAACGGGT+AGG | + | chr1.4:50897575-50897594 | None:intergenic | 55.0% | |
| GATGTCGACGGTGTATACGC+CGG | + | chr1.4:50897644-50897663 | None:intergenic | 55.0% | |
| GCCGGTGGTGCATATGTATG+CGG | + | chr1.4:50897626-50897645 | None:intergenic | 55.0% | |
| GGGGCAACAACATCCTTAGC+AGG | + | chr1.4:50898850-50898869 | None:intergenic | 55.0% | |
| GGTCAGTGCCCACATTGGAT+AGG | - | chr1.4:50898319-50898338 | MS.gene47376:intron | 55.0% | |
| GGTGGTGCATATGTATGCGG+TGG | + | chr1.4:50897623-50897642 | None:intergenic | 55.0% | |
| TGATAAGGCGGACGCTGAGA+TGG | + | chr1.4:50897803-50897822 | None:intergenic | 55.0% | |
| TGCCCCCCTTACCACTTGTT+CGG | - | chr1.4:50898864-50898883 | MS.gene47376:CDS | 55.0% | |
| TGTTGGATATGTCGGCGGTG+CGG | + | chr1.4:50897666-50897685 | None:intergenic | 55.0% | |
| GACTGAGAACGGGTAGGTGG+AGG | + | chr1.4:50897569-50897588 | None:intergenic | 60.0% | |
| GATCAGAAGGTTGGAGGCGG+CGG | + | chr1.4:50899242-50899261 | None:intergenic | 60.0% | |
| GCCCCCCTTACCACTTGTTC+GGG | - | chr1.4:50898865-50898884 | MS.gene47376:CDS | 60.0% | |
| GGAGACTGAGAACGGGTAGG+TGG | + | chr1.4:50897572-50897591 | None:intergenic | 60.0% | |
| CAGCGTCCGCCTTATCAGGC+TGG | - | chr1.4:50897806-50897825 | MS.gene47376:CDS | 65.0% | |
| GGCGGACGCTGAGATGGCTT+AGG | + | chr1.4:50897797-50897816 | None:intergenic | 65.0% | |
| GTCGACGGTGTATACGCCGG+TGG | + | chr1.4:50897641-50897660 | None:intergenic | 65.0% | |
| GTCGGCGGTGCGGATGTCGA+CGG | + | chr1.4:50897656-50897675 | None:intergenic | 70.0% | |
| GGAGGCGGCGGTGACGTCCA+TGG | + | chr1.4:50899230-50899249 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 50897566 | 50899317 | 50897566 | ID=MS.gene47376 |
| chr1.4 | mRNA | 50897566 | 50899317 | 50897566 | ID=MS.gene47376.t1;Parent=MS.gene47376 |
| chr1.4 | exon | 50898977 | 50899317 | 50898977 | ID=MS.gene47376.t1.exon1;Parent=MS.gene47376.t1 |
| chr1.4 | CDS | 50898977 | 50899317 | 50898977 | ID=cds.MS.gene47376.t1;Parent=MS.gene47376.t1 |
| chr1.4 | exon | 50898766 | 50898898 | 50898766 | ID=MS.gene47376.t1.exon2;Parent=MS.gene47376.t1 |
| chr1.4 | CDS | 50898766 | 50898898 | 50898766 | ID=cds.MS.gene47376.t1;Parent=MS.gene47376.t1 |
| chr1.4 | exon | 50898391 | 50898669 | 50898391 | ID=MS.gene47376.t1.exon3;Parent=MS.gene47376.t1 |
| chr1.4 | CDS | 50898391 | 50898669 | 50898391 | ID=cds.MS.gene47376.t1;Parent=MS.gene47376.t1 |
| chr1.4 | exon | 50897566 | 50898027 | 50897566 | ID=MS.gene47376.t1.exon4;Parent=MS.gene47376.t1 |
| chr1.4 | CDS | 50897566 | 50898027 | 50897566 | ID=cds.MS.gene47376.t1;Parent=MS.gene47376.t1 |
| Gene Sequence |
| Protein sequence |
