Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47509.t1 | XP_003608057.2 | 96.2 | 1039 | 40 | 0 | 1 | 1039 | 1 | 1039 | 0.00E+00 | 1872.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47509.t1 | Q9ERE3 | 33.7 | 95 | 61 | 2 | 579 | 672 | 31 | 124 | 6.5e-07 | 58.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47509.t1 | G7JNK6 | 96.2 | 1039 | 40 | 0 | 1 | 1039 | 1 | 1039 | 0.0e+00 | 1872.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060933 | MS.gene47509 | 0.804763 | 1.85E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47509.t1 | MTR_4g087210 | 97.016 | 1039 | 31 | 0 | 1 | 1039 | 1 | 1039 | 0.0 | 2084 |
| MS.gene47509.t1 | MTR_1g034190 | 62.224 | 1043 | 322 | 11 | 6 | 1037 | 13 | 994 | 0.0 | 1252 |
| MS.gene47509.t1 | MTR_0147s0080 | 40.664 | 482 | 222 | 11 | 561 | 1031 | 679 | 1107 | 1.41e-91 | 317 |
| MS.gene47509.t1 | MTR_0147s0080 | 33.105 | 438 | 248 | 7 | 1 | 405 | 3 | 428 | 1.41e-64 | 238 |
| MS.gene47509.t1 | MTR_4g101240 | 84.615 | 169 | 25 | 1 | 502 | 669 | 18 | 186 | 7.53e-91 | 289 |
| MS.gene47509.t1 | MTR_4g012875 | 33.105 | 438 | 248 | 7 | 1 | 405 | 3 | 428 | 2.31e-66 | 239 |
| MS.gene47509.t1 | MTR_4g012875 | 57.471 | 87 | 37 | 0 | 561 | 647 | 679 | 765 | 5.99e-25 | 112 |
| MS.gene47509.t1 | MTR_0147s0080 | 33.105 | 438 | 248 | 7 | 1 | 405 | 3 | 428 | 5.05e-65 | 238 |
| MS.gene47509.t1 | MTR_0147s0080 | 40.782 | 358 | 153 | 9 | 561 | 908 | 679 | 987 | 4.05e-61 | 227 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47509.t1 | AT2G15900 | 52.622 | 1049 | 415 | 16 | 4 | 1032 | 2 | 988 | 0.0 | 1034 |
| MS.gene47509.t1 | AT1G15240 | 32.058 | 1098 | 582 | 26 | 3 | 1030 | 4 | 1007 | 1.07e-165 | 514 |
| MS.gene47509.t1 | AT1G15240 | 30.868 | 1095 | 585 | 27 | 3 | 1019 | 4 | 1004 | 2.38e-152 | 479 |
| MS.gene47509.t1 | AT1G15240 | 31.513 | 714 | 401 | 17 | 3 | 647 | 4 | 698 | 2.09e-94 | 316 |
| MS.gene47509.t1 | AT1G15240 | 31.513 | 714 | 401 | 17 | 3 | 647 | 4 | 698 | 2.09e-94 | 316 |
| MS.gene47509.t1 | AT1G15240 | 31.513 | 714 | 401 | 17 | 3 | 647 | 4 | 698 | 2.09e-94 | 316 |
Find 227 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGCCACCATTTGTTATT+TGG | 0.123366 | 4.3:+25900028 | None:intergenic |
| CTCTCCCTGGTCACTCATTT+TGG | 0.156603 | 4.3:+25906597 | None:intergenic |
| TGAGAGGCGCGAAGGATTTC+GGG | 0.165173 | 4.3:-25906014 | MS.gene47509:CDS |
| CATTCTTACTCGCGATAATT+TGG | 0.179445 | 4.3:-25903070 | MS.gene47509:CDS |
| TTGAGAGGCGCGAAGGATTT+CGG | 0.227157 | 4.3:-25906015 | MS.gene47509:CDS |
| GGCAAATGCAATGTGTAATT+TGG | 0.236142 | 4.3:+25905152 | None:intergenic |
| CATTGCATTTGCCTCCTAAA+AGG | 0.265777 | 4.3:-25905142 | MS.gene47509:CDS |
| ATTCCATTTGTTGAACTCTA+AGG | 0.270304 | 4.3:-25909598 | MS.gene47509:CDS |
| ACTGCCACCATTTGTTATTT+GGG | 0.274884 | 4.3:+25900029 | None:intergenic |
| CCTTCGCGCCTCTCAAATTC+CGG | 0.277396 | 4.3:+25906022 | None:intergenic |
| TTTCTGAAGAACTACTCTTT+TGG | 0.284193 | 4.3:-25904574 | MS.gene47509:intron |
| ATGGAGCTACCTTCTTGATT+AGG | 0.286690 | 4.3:+25906064 | None:intergenic |
| GCAACTTGCCTATGCAATTC+TGG | 0.300577 | 4.3:-25898796 | MS.gene47509:CDS |
| GATGCAGCCTGTTATGAATT+TGG | 0.304321 | 4.3:-25909326 | MS.gene47509:CDS |
| AAGCCTTCTCAAACAATAAC+TGG | 0.323170 | 4.3:-25900000 | MS.gene47509:CDS |
| GTTTACTCACTAACGTTTCC+TGG | 0.326174 | 4.3:+25906329 | None:intergenic |
| ATCTCAGTTCCTTGGTATAA+AGG | 0.329897 | 4.3:+25906628 | None:intergenic |
| TCAAACGATAATTTCTTGTC+TGG | 0.332288 | 4.3:+25906193 | None:intergenic |
| GACATCAAGAAACTGCTCTT+TGG | 0.346783 | 4.3:-25899901 | MS.gene47509:intron |
| AGTTCAAGCTCCGCACTCTT+TGG | 0.351842 | 4.3:-25910418 | MS.gene47509:CDS |
| TCTCAAACAATAACTGGATC+TGG | 0.357752 | 4.3:-25899994 | MS.gene47509:CDS |
| TGGAGCTACCTTCTTGATTA+GGG | 0.358391 | 4.3:+25906065 | None:intergenic |
| CATACCCGGCACCGGAGCTT+TGG | 0.360237 | 4.3:+25905944 | None:intergenic |
| TTGCTGAACAACATGAAGTA+TGG | 0.367730 | 4.3:-25904738 | MS.gene47509:CDS |
| GTTCTTCTGACATGATAGTT+AGG | 0.369716 | 4.3:-25905985 | MS.gene47509:CDS |
| ACAGCCCAAGCCTGCTGATT+GGG | 0.370529 | 4.3:-25906536 | MS.gene47509:CDS |
| TGATCAGGAAACTCCCTATC+TGG | 0.371544 | 4.3:+25909905 | None:intergenic |
| AATGCAGGAGACAGGTGTTT+TGG | 0.376563 | 4.3:-25900901 | MS.gene47509:intron |
| TGTGCCCAATCAGCAGGCTT+GGG | 0.385165 | 4.3:+25906532 | None:intergenic |
| CCACATGTTCTCAAGATTCT+CGG | 0.390463 | 4.3:+25906465 | None:intergenic |
| TGAGGCAGATTCACTGGCTT+CGG | 0.395414 | 4.3:-25900823 | MS.gene47509:CDS |
| AGAAGAAATCAAGCGGCAAT+AGG | 0.399169 | 4.3:-25909672 | MS.gene47509:CDS |
| GAGTGCGGAGCTTGAACTCT+TGG | 0.399382 | 4.3:+25910423 | None:intergenic |
| AGGGATTTAGTTGATTTAGT+AGG | 0.400244 | 4.3:-25909714 | MS.gene47509:CDS |
| GGCTCTTGAGGCAGATTCAC+TGG | 0.400717 | 4.3:-25900829 | MS.gene47509:CDS |
| CTGATACTGAGGACGGTGAT+AGG | 0.404829 | 4.3:-25903275 | MS.gene47509:CDS |
| CACAGCCCAAGCCTGCTGAT+TGG | 0.405397 | 4.3:-25906537 | MS.gene47509:CDS |
| GGGCTTGCCAAATTCATAAC+AGG | 0.408154 | 4.3:+25909319 | None:intergenic |
| CAAATTATCGCGAGTAAGAA+TGG | 0.411932 | 4.3:+25903071 | None:intergenic |
| GCCTTGGAATGCAGATGAAT+TGG | 0.413059 | 4.3:-25903343 | MS.gene47509:CDS |
| AACATCACAAAACACGAATC+TGG | 0.416215 | 4.3:-25899964 | MS.gene47509:CDS |
| GACAAGAAATTATCGTTTGA+GGG | 0.418417 | 4.3:-25906190 | MS.gene47509:CDS |
| GAGAACAAAATTGTCAAAAG+TGG | 0.419503 | 4.3:-25906415 | MS.gene47509:CDS |
| ACATACATATCTGTCACATT+TGG | 0.425305 | 4.3:-25910092 | MS.gene47509:CDS |
| CCGTGATTCGCTCAATATCT+CGG | 0.429698 | 4.3:-25909369 | MS.gene47509:CDS |
| GGTATAAAATTTCATTAAAG+AGG | 0.436199 | 4.3:-25906117 | MS.gene47509:CDS |
| GCCATTGCATCCTCCACAAC+AGG | 0.436964 | 4.3:+25909989 | None:intergenic |
| ACCTCAGGTGGCACTCCAAC+AGG | 0.437065 | 4.3:+25903042 | None:intergenic |
| TAAATAATGTCGAATTTCGT+TGG | 0.437575 | 4.3:-25910135 | MS.gene47509:CDS |
| AACATTTGTGCCCAATCAGC+AGG | 0.439180 | 4.3:+25906526 | None:intergenic |
| CTACATCATTGTACTTGCCT+TGG | 0.443628 | 4.3:-25903359 | MS.gene47509:CDS |
| ACAACTTTAGTCAGCTTGAT+CGG | 0.445570 | 4.3:-25899002 | MS.gene47509:CDS |
| ATCAAGCTGACTAAAGTTGT+TGG | 0.447061 | 4.3:+25899005 | None:intergenic |
| TCAAGCTCCGCACTCTTTGG+TGG | 0.447896 | 4.3:-25910415 | MS.gene47509:CDS |
| CTTCTCTATCAAAATTATCA+TGG | 0.448603 | 4.3:+25903238 | None:intergenic |
| CTTGAGAACATGTGGGCAAA+AGG | 0.449336 | 4.3:-25906457 | MS.gene47509:CDS |
| ATTATAGCGTGTATCTGATC+AGG | 0.453520 | 4.3:+25909890 | None:intergenic |
| CTTCGCGCCTCTCAAATTCC+GGG | 0.455719 | 4.3:+25906023 | None:intergenic |
| GTAAGAATGGAATTTGTAGT+TGG | 0.456922 | 4.3:+25903084 | None:intergenic |
| GGCAATTAGCTCCAAAGCTC+CGG | 0.457099 | 4.3:-25905955 | MS.gene47509:CDS |
| CAAACGATAATTTCTTGTCT+GGG | 0.458726 | 4.3:+25906194 | None:intergenic |
| TCTATCAATAGCCAAGTTGC+TGG | 0.459990 | 4.3:+25903149 | None:intergenic |
| TTGTGCCCAATCAGCAGGCT+TGG | 0.461797 | 4.3:+25906531 | None:intergenic |
| CAACTTTAGTCAGCTTGATC+GGG | 0.462226 | 4.3:-25899001 | MS.gene47509:CDS |
| CCAATGTCATCTCAGTTCCT+TGG | 0.462306 | 4.3:+25906620 | None:intergenic |
| AATTGTCAAAAGTGGATCTC+AGG | 0.463231 | 4.3:-25906407 | MS.gene47509:CDS |
| AGCTCCAAAGCTCCGGTGCC+GGG | 0.463328 | 4.3:-25905948 | MS.gene47509:intron |
| GTAGCCAAGGCATGCGTTGA+AGG | 0.466913 | 4.3:+25906268 | None:intergenic |
| AACACAACATTCCTCATCTC+AGG | 0.469294 | 4.3:+25898750 | None:intergenic |
| CTCAAACAATAACTGGATCT+GGG | 0.470948 | 4.3:-25899993 | MS.gene47509:CDS |
| ATATTTCAGCTTAAGAAAAG+AGG | 0.472622 | 4.3:-25901648 | MS.gene47509:CDS |
| AAAAGAGGGACACTAACATT+AGG | 0.474329 | 4.3:+25901687 | None:intergenic |
| CAAGCTGATACACACCTTTG+AGG | 0.474403 | 4.3:+25904699 | None:intergenic |
| TCCTGTTGTGGAGGATGCAA+TGG | 0.476491 | 4.3:-25909990 | MS.gene47509:CDS |
| GGCAAGTACAATGATGTAGA+AGG | 0.478982 | 4.3:+25903363 | None:intergenic |
| AGACAAGAAATTATCGTTTG+AGG | 0.481689 | 4.3:-25906191 | MS.gene47509:CDS |
| ATTCCTCATCTCAGGAAAGA+TGG | 0.481971 | 4.3:+25898758 | None:intergenic |
| GTCTAGCAGTGCTTCTGCCT+TGG | 0.482912 | 4.3:-25906095 | MS.gene47509:CDS |
| TTTGAAAGGTTACCCATCAC+TGG | 0.482993 | 4.3:-25903193 | MS.gene47509:CDS |
| ACTCAGAAATTACTCCAGAT+AGG | 0.483988 | 4.3:-25909919 | MS.gene47509:CDS |
| GTTATGAATTTGGCAAGCCC+AGG | 0.484130 | 4.3:-25909316 | MS.gene47509:CDS |
| ACACTATTGCACAAGGGATT+CGG | 0.485507 | 4.3:-25900793 | MS.gene47509:CDS |
| CAGATCATTCACACTCTCCA+TGG | 0.486840 | 4.3:+25910448 | None:intergenic |
| TGATATTGTACGCCAGTTCA+AGG | 0.487332 | 4.3:-25903445 | MS.gene47509:CDS |
| TAGCTCCAAAGCTCCGGTGC+CGG | 0.490557 | 4.3:-25905949 | MS.gene47509:CDS |
| GAAAATTGATTCTCCTGTTG+TGG | 0.492238 | 4.3:-25910002 | MS.gene47509:CDS |
| GGTGATAGGATCAGTAATCT+AGG | 0.496975 | 4.3:-25903261 | MS.gene47509:CDS |
| GCAAGTTGCTTCATACATAC+AGG | 0.497120 | 4.3:+25898810 | None:intergenic |
| TTAAGAAAAGAGGTTGGATA+AGG | 0.497523 | 4.3:-25901638 | MS.gene47509:intron |
| CACATGTTCTCAAGATTCTC+GGG | 0.498204 | 4.3:+25906466 | None:intergenic |
| ACTGAAGTAATATATATCTC+TGG | 0.498988 | 4.3:+25898956 | None:intergenic |
| CAGCAACATTAGCTATTGAC+AGG | 0.499362 | 4.3:+25904755 | None:intergenic |
| GACAGATATGTATGTGATCT+AGG | 0.500161 | 4.3:+25910100 | None:intergenic |
| TGCTGATTGGGCACAAATGT+TGG | 0.500813 | 4.3:-25906524 | MS.gene47509:CDS |
| ACTAAAACGTTGCAGGTTGT+GGG | 0.500935 | 4.3:-25905763 | MS.gene47509:intron |
| TCTTACTCGCGATAATTTGG+AGG | 0.501090 | 4.3:-25903067 | MS.gene47509:CDS |
| TCCAATTCATCTGCATTCCA+AGG | 0.501892 | 4.3:+25903342 | None:intergenic |
| CGAGATATTGAGCGAATCAC+GGG | 0.501991 | 4.3:+25909370 | None:intergenic |
| CAAAAGGAAGAAATTACAAA+AGG | 0.502379 | 4.3:-25906441 | MS.gene47509:CDS |
| GATTCACTGGCTTCGGAAAG+AGG | 0.502982 | 4.3:-25900816 | MS.gene47509:CDS |
| TAATGTCGAATTTCGTTGGA+AGG | 0.504035 | 4.3:-25910131 | MS.gene47509:CDS |
| AGGATTTCGTGGTTGATTTG+TGG | 0.504295 | 4.3:-25909943 | MS.gene47509:CDS |
| CTCTCGGGAGACCTTAGTGC+TGG | 0.505208 | 4.3:+25909567 | None:intergenic |
| GTATAGTCTGTTACCAGTGA+TGG | 0.505667 | 4.3:+25903180 | None:intergenic |
| GATATTGTACGCCAGTTCAA+GGG | 0.507285 | 4.3:-25903444 | MS.gene47509:CDS |
| GATCCAGTTATTGTTTGAGA+AGG | 0.507690 | 4.3:+25899997 | None:intergenic |
| AGATATATATTACTTCAGTC+AGG | 0.511847 | 4.3:-25898952 | MS.gene47509:intron |
| TCAGTGATGAAGACCTTGGC+AGG | 0.513783 | 4.3:-25904541 | MS.gene47509:intron |
| TTCAGCTTAAGAAAAGAGGT+TGG | 0.515152 | 4.3:-25901644 | MS.gene47509:CDS |
| CCGAGATATTGAGCGAATCA+CGG | 0.519630 | 4.3:+25909369 | None:intergenic |
| GCTCCTTAGAGTTCAACAAA+TGG | 0.519682 | 4.3:+25909595 | None:intergenic |
| TTTCTGTTAATGCAGGAGAC+AGG | 0.520489 | 4.3:-25900909 | MS.gene47509:intron |
| TCAGATACACGCTATAATCA+TGG | 0.521586 | 4.3:-25909885 | MS.gene47509:CDS |
| CTGATGCACAGAATAGAACT+TGG | 0.521866 | 4.3:-25905684 | MS.gene47509:CDS |
| TACTGACGAGTCCAGCAACT+TGG | 0.522257 | 4.3:-25903160 | MS.gene47509:CDS |
| CAAGCTCCGCACTCTTTGGT+GGG | 0.523101 | 4.3:-25910414 | MS.gene47509:CDS |
| TGATTTAGTAGGTGATCACT+TGG | 0.523119 | 4.3:-25909703 | MS.gene47509:CDS |
| GACATGATAGTTAGGAAAGA+GGG | 0.524862 | 4.3:-25905977 | MS.gene47509:CDS |
| GTGATCTGTCGGAGGAAGCT+AGG | 0.527680 | 4.3:-25903122 | MS.gene47509:CDS |
| TCTACCTTCAACGCATGCCT+TGG | 0.527916 | 4.3:-25906272 | MS.gene47509:CDS |
| CGTGATTCGCTCAATATCTC+GGG | 0.528206 | 4.3:-25909368 | MS.gene47509:CDS |
| ACAGTCAGAAGCAGAACTCT+TGG | 0.531509 | 4.3:+25906375 | None:intergenic |
| GATGGTTTAAGGCGAAAAGT+TGG | 0.532809 | 4.3:-25903414 | MS.gene47509:CDS |
| TTTGTAAGGATGTCTCTCCC+TGG | 0.533191 | 4.3:+25906584 | None:intergenic |
| GTCAAAACAGATATTACAGC+TGG | 0.533552 | 4.3:-25900876 | MS.gene47509:CDS |
| CTGCCACCATTTGTTATTTG+GGG | 0.534946 | 4.3:+25900030 | None:intergenic |
| TCACACCTTGTACTCACTCT+CGG | 0.535005 | 4.3:+25909551 | None:intergenic |
| CTCAGAAATTACTCCAGATA+GGG | 0.535941 | 4.3:-25909918 | MS.gene47509:CDS |
| ACAGATATTACAGCTGGTGA+TGG | 0.538825 | 4.3:-25900870 | MS.gene47509:CDS |
| TCTATCTAGTGTGCCTCCCC+CGG | 0.539274 | 4.3:-25910038 | MS.gene47509:CDS |
| GTACTTGCAACGCTTTGTAG+TGG | 0.541782 | 4.3:+25906241 | None:intergenic |
| CACACCTTGTACTCACTCTC+GGG | 0.542690 | 4.3:+25909552 | None:intergenic |
| AGAGGGACACTAACATTAGG+AGG | 0.542691 | 4.3:+25901690 | None:intergenic |
| AAAGGCATCATCAGTGTTCG+AGG | 0.544346 | 4.3:+25905112 | None:intergenic |
| TTGTCAACCAAATTCAAAAG+AGG | 0.545274 | 4.3:+25901672 | None:intergenic |
| GGATTACCCCAAATAACAAA+TGG | 0.545345 | 4.3:-25900036 | MS.gene47509:CDS |
| GGTTTAAGGCGAAAAGTTGG+TGG | 0.548757 | 4.3:-25903411 | MS.gene47509:CDS |
| AACATTATCTACAGAAGAGA+GGG | 0.551246 | 4.3:-25909634 | MS.gene47509:CDS |
| AGCTACCTTCTTGATTAGGG+TGG | 0.551883 | 4.3:+25906068 | None:intergenic |
| ACAAAGGACCATGCTTCTGA+AGG | 0.554554 | 4.3:-25906139 | MS.gene47509:CDS |
| AGGAGCTTCATCCAGCACTA+AGG | 0.554669 | 4.3:-25909578 | MS.gene47509:CDS |
| TTCTTCAGTGATGAAGACCT+TGG | 0.556745 | 4.3:-25904545 | MS.gene47509:CDS |
| TCTCCATCTTTCCTGAGATG+AGG | 0.557282 | 4.3:-25898761 | MS.gene47509:CDS |
| GTCTCCCGAGAGTGAGTACA+AGG | 0.560164 | 4.3:-25909556 | MS.gene47509:intron |
| TGGAAGACGCTATTGATGAT+TGG | 0.560447 | 4.3:-25900850 | MS.gene47509:CDS |
| GATAATTTGGAGGATCCTGT+TGG | 0.562138 | 4.3:-25903057 | MS.gene47509:CDS |
| AGATCATTCACACTCTCCAT+GGG | 0.565955 | 4.3:+25910449 | None:intergenic |
| TGACATGATAGTTAGGAAAG+AGG | 0.566809 | 4.3:-25905978 | MS.gene47509:CDS |
| CTATTGATGATTGGCTCTTG+AGG | 0.567715 | 4.3:-25900841 | MS.gene47509:CDS |
| CAAAATTGCATACCCGGCAC+CGG | 0.570244 | 4.3:+25905936 | None:intergenic |
| TCAGCTTGATAAATATCTCC+AGG | 0.570844 | 4.3:-25905072 | MS.gene47509:intron |
| TTGATTAGGGTGGATTGCCA+AGG | 0.571026 | 4.3:+25906078 | None:intergenic |
| TTCAACGCATGCCTTGGCTA+CGG | 0.571209 | 4.3:-25906266 | MS.gene47509:CDS |
| TATAGTCTGTTACCAGTGAT+GGG | 0.573413 | 4.3:+25903181 | None:intergenic |
| GGCCCCTCATTGATGAGGGA+TGG | 0.575821 | 4.3:+25903384 | None:intergenic |
| CCGGAATTTGAGAGGCGCGA+AGG | 0.578136 | 4.3:-25906022 | MS.gene47509:CDS |
| GCTCAGAGTTGATAAAGTGA+AGG | 0.578324 | 4.3:-25906164 | MS.gene47509:CDS |
| CCGAGAATCTTGAGAACATG+TGG | 0.578801 | 4.3:-25906465 | MS.gene47509:CDS |
| CAAAGGACCATGCTTCTGAA+GGG | 0.578907 | 4.3:-25906138 | MS.gene47509:CDS |
| GATGAAGAACTCACGGCGCT+TGG | 0.582116 | 4.3:+25898700 | None:intergenic |
| TCACCATCCCTCATCAATGA+GGG | 0.582691 | 4.3:-25903387 | MS.gene47509:CDS |
| TGATAGACAGCGTGATCTGT+CGG | 0.584287 | 4.3:-25903133 | MS.gene47509:CDS |
| TAGAAGTTCCAGAATTGCAT+AGG | 0.584754 | 4.3:+25898788 | None:intergenic |
| TGATTGGGCACAAATGTTGG+AGG | 0.587274 | 4.3:-25906521 | MS.gene47509:CDS |
| GCAATCCACCCTAATCAAGA+AGG | 0.589850 | 4.3:-25906073 | MS.gene47509:CDS |
| CTCAGAGTTGATAAAGTGAA+GGG | 0.590030 | 4.3:-25906163 | MS.gene47509:CDS |
| TGTGTTAAGTTCTGATACTG+AGG | 0.591702 | 4.3:-25903286 | MS.gene47509:CDS |
| ATTGGCCAAAATGAGTGACC+AGG | 0.595103 | 4.3:-25906602 | MS.gene47509:CDS |
| TGTCAACCAAATTCAAAAGA+GGG | 0.595928 | 4.3:+25901673 | None:intergenic |
| AATGTAGCAAGTCATCATCA+TGG | 0.596509 | 4.3:-25906709 | MS.gene47509:CDS |
| ACTGGTGAGGAAATAAGAAA+CGG | 0.596825 | 4.3:+25910376 | None:intergenic |
| GTCAGAAGCAGAACTCTTGG+TGG | 0.599173 | 4.3:+25906378 | None:intergenic |
| TTATGAATTTGGCAAGCCCA+GGG | 0.600445 | 4.3:-25909315 | MS.gene47509:intron |
| GAGAGGCGCGAAGGATTTCG+GGG | 0.601061 | 4.3:-25906013 | MS.gene47509:CDS |
| AACGATGAAGAAGAAACCCA+TGG | 0.606840 | 4.3:-25910465 | None:intergenic |
| AACTCTGTTGCTAATAGCGG+CGG | 0.607664 | 4.3:-25906685 | MS.gene47509:CDS |
| TGATAAAGTGAAGGGTACAA+AGG | 0.608098 | 4.3:-25906155 | MS.gene47509:CDS |
| ATCACCATCCCTCATCAATG+AGG | 0.608597 | 4.3:-25903388 | MS.gene47509:CDS |
| TAGAAGGCCCCTCATTGATG+AGG | 0.608644 | 4.3:+25903379 | None:intergenic |
| TTTCAGGTCCTCTGGCCTGG+TGG | 0.613712 | 4.3:-25900078 | MS.gene47509:intron |
| CAAACAATAACTGGATCTGG+GGG | 0.614994 | 4.3:-25899991 | MS.gene47509:CDS |
| TCAAACAATAACTGGATCTG+GGG | 0.615435 | 4.3:-25899992 | MS.gene47509:CDS |
| TCAGTTCCTTGGTATAAAGG+TGG | 0.619427 | 4.3:+25906631 | None:intergenic |
| TAATAAGAGGATACCTGCCA+AGG | 0.620262 | 4.3:+25904528 | None:intergenic |
| GAAACGTTAGTGAGTAAACA+TGG | 0.620799 | 4.3:-25906325 | MS.gene47509:CDS |
| GGTAACTCTGTTGCTAATAG+CGG | 0.621046 | 4.3:-25906688 | MS.gene47509:CDS |
| CTATTGCACAAGGGATTCGG+TGG | 0.621228 | 4.3:-25900790 | MS.gene47509:CDS |
| TGTTGTAGCACTTTGCTGTG+TGG | 0.621233 | 4.3:+25903311 | None:intergenic |
| TCTTGCTGAAATATCAGCGA+GGG | 0.621365 | 4.3:-25909858 | MS.gene47509:CDS |
| TGCTGAACAACATGAAGTAT+GGG | 0.622281 | 4.3:-25904737 | MS.gene47509:CDS |
| ATATTGTACGCCAGTTCAAG+GGG | 0.623871 | 4.3:-25903443 | MS.gene47509:CDS |
| AAAAGTGAAACTTACTGGTG+AGG | 0.625310 | 4.3:+25910363 | None:intergenic |
| AAACATTATCTACAGAAGAG+AGG | 0.626948 | 4.3:-25909635 | MS.gene47509:CDS |
| AATTGATTCTCCTGTTGTGG+AGG | 0.630990 | 4.3:-25909999 | MS.gene47509:CDS |
| TCAGAAGCAGAACTCTTGGT+GGG | 0.631804 | 4.3:+25906379 | None:intergenic |
| TTGTAGTGGATCCGTAGCCA+AGG | 0.632370 | 4.3:+25906255 | None:intergenic |
| TCCTGTTGGAGTGCCACCTG+AGG | 0.632724 | 4.3:-25903043 | MS.gene47509:intron |
| GAGGGACACTAACATTAGGA+GGG | 0.632912 | 4.3:+25901691 | None:intergenic |
| GGCATGCGTTGAAGGTAGAG+AGG | 0.639200 | 4.3:+25906276 | None:intergenic |
| TGAGTAGACAGCAAAAGATG+TGG | 0.639580 | 4.3:+25905717 | None:intergenic |
| CCAAGGAACTGAGATGACAT+TGG | 0.639721 | 4.3:-25906620 | MS.gene47509:CDS |
| CAGATACAAGTAAATCGATG+TGG | 0.645726 | 4.3:-25910207 | MS.gene47509:CDS |
| AGAGAGCCCACCAAAGAGTG+CGG | 0.646390 | 4.3:+25910408 | None:intergenic |
| AAAGAGGACACTATTGCACA+AGG | 0.651055 | 4.3:-25900800 | MS.gene47509:CDS |
| ATCTTGTCGACTTGTTGACA+AGG | 0.652613 | 4.3:-25909823 | MS.gene47509:intron |
| AGAAGGCCCCTCATTGATGA+GGG | 0.652966 | 4.3:+25903380 | None:intergenic |
| AAAACTTACCACCAGGCCAG+AGG | 0.653092 | 4.3:+25900070 | None:intergenic |
| TTACCCCAAATAACAAATGG+TGG | 0.655508 | 4.3:-25900033 | MS.gene47509:CDS |
| CACCATCCCTCATCAATGAG+GGG | 0.658813 | 4.3:-25903386 | MS.gene47509:CDS |
| TGTTGGAGGTTGCAACTCAG+AGG | 0.658967 | 4.3:-25906507 | MS.gene47509:CDS |
| AACGCAACGTTGATGTACAA+AGG | 0.659249 | 4.3:+25905094 | None:intergenic |
| TAAAGGTGGATGCTTACTAG+AGG | 0.667472 | 4.3:+25906645 | None:intergenic |
| CAGCCTACACATACCTCAGG+TGG | 0.668348 | 4.3:+25903030 | None:intergenic |
| ACATGATAGTTAGGAAAGAG+GGG | 0.669528 | 4.3:-25905976 | MS.gene47509:CDS |
| CGAGAATCTTGAGAACATGT+GGG | 0.676043 | 4.3:-25906464 | MS.gene47509:CDS |
| AGTAAATGTAGATGATGCTG+TGG | 0.677534 | 4.3:-25903469 | MS.gene47509:CDS |
| TTGGCCAAAATGAGTGACCA+GGG | 0.681969 | 4.3:-25906601 | MS.gene47509:CDS |
| AAGCATCCACCTTTATACCA+AGG | 0.684251 | 4.3:-25906637 | MS.gene47509:CDS |
| CAAACAAATAGAATTGACAT+CGG | 0.705401 | 4.3:+25910175 | None:intergenic |
| AGGGACACTAACATTAGGAG+GGG | 0.709938 | 4.3:+25901692 | None:intergenic |
| TAGACAGCGTGATCTGTCGG+AGG | 0.710399 | 4.3:-25903130 | MS.gene47509:CDS |
| TTAAGTTCTGATACTGAGGA+CGG | 0.710919 | 4.3:-25903282 | MS.gene47509:CDS |
| AAGAGGACACTATTGCACAA+GGG | 0.711968 | 4.3:-25900799 | MS.gene47509:CDS |
| TTCTTGCTGAAATATCAGCG+AGG | 0.728738 | 4.3:-25909859 | MS.gene47509:CDS |
| TATTGTACGCCAGTTCAAGG+GGG | 0.741462 | 4.3:-25903442 | MS.gene47509:CDS |
| AAACAATAACTGGATCTGGG+GGG | 0.752214 | 4.3:-25899990 | MS.gene47509:CDS |
| GGAGGCACACTAGATAGACG+CGG | 0.786280 | 4.3:+25910043 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 25898710 | 25910483 | 25898710 | ID=MS.gene47509 |
| chr4.3 | mRNA | 25898710 | 25910483 | 25898710 | ID=MS.gene47509.t1;Parent=MS.gene47509 |
| chr4.3 | exon | 25910378 | 25910483 | 25910378 | ID=MS.gene47509.t1.exon1;Parent=MS.gene47509.t1 |
| chr4.3 | CDS | 25910378 | 25910483 | 25910378 | ID=cds.MS.gene47509.t1;Parent=MS.gene47509.t1 |
| chr4.3 | exon | 25909824 | 25910226 | 25909824 | ID=MS.gene47509.t1.exon2;Parent=MS.gene47509.t1 |
| chr4.3 | CDS | 25909824 | 25910226 | 25909824 | ID=cds.MS.gene47509.t1;Parent=MS.gene47509.t1 |
| chr4.3 | exon | 25909557 | 25909734 | 25909557 | ID=MS.gene47509.t1.exon3;Parent=MS.gene47509.t1 |
| chr4.3 | CDS | 25909557 | 25909734 | 25909557 | ID=cds.MS.gene47509.t1;Parent=MS.gene47509.t1 |
| chr4.3 | exon | 25909316 | 25909455 | 25909316 | ID=MS.gene47509.t1.exon4;Parent=MS.gene47509.t1 |
| chr4.3 | CDS | 25909316 | 25909455 | 25909316 | ID=cds.MS.gene47509.t1;Parent=MS.gene47509.t1 |
| chr4.3 | exon | 25905949 | 25906816 | 25905949 | ID=MS.gene47509.t1.exon5;Parent=MS.gene47509.t1 |
| chr4.3 | CDS | 25905949 | 25906816 | 25905949 | ID=cds.MS.gene47509.t1;Parent=MS.gene47509.t1 |
| chr4.3 | exon | 25905670 | 25905770 | 25905670 | ID=MS.gene47509.t1.exon6;Parent=MS.gene47509.t1 |
| chr4.3 | CDS | 25905670 | 25905770 | 25905670 | ID=cds.MS.gene47509.t1;Parent=MS.gene47509.t1 |
| chr4.3 | exon | 25905073 | 25905217 | 25905073 | ID=MS.gene47509.t1.exon7;Parent=MS.gene47509.t1 |
| chr4.3 | CDS | 25905073 | 25905217 | 25905073 | ID=cds.MS.gene47509.t1;Parent=MS.gene47509.t1 |
| chr4.3 | exon | 25904714 | 25904782 | 25904714 | ID=MS.gene47509.t1.exon8;Parent=MS.gene47509.t1 |
| chr4.3 | CDS | 25904714 | 25904782 | 25904714 | ID=cds.MS.gene47509.t1;Parent=MS.gene47509.t1 |
| chr4.3 | exon | 25904542 | 25904587 | 25904542 | ID=MS.gene47509.t1.exon9;Parent=MS.gene47509.t1 |
| chr4.3 | CDS | 25904542 | 25904587 | 25904542 | ID=cds.MS.gene47509.t1;Parent=MS.gene47509.t1 |
| chr4.3 | exon | 25903044 | 25903489 | 25903044 | ID=MS.gene47509.t1.exon10;Parent=MS.gene47509.t1 |
| chr4.3 | CDS | 25903044 | 25903489 | 25903044 | ID=cds.MS.gene47509.t1;Parent=MS.gene47509.t1 |
| chr4.3 | exon | 25901639 | 25901718 | 25901639 | ID=MS.gene47509.t1.exon11;Parent=MS.gene47509.t1 |
| chr4.3 | CDS | 25901639 | 25901718 | 25901639 | ID=cds.MS.gene47509.t1;Parent=MS.gene47509.t1 |
| chr4.3 | exon | 25900781 | 25900916 | 25900781 | ID=MS.gene47509.t1.exon12;Parent=MS.gene47509.t1 |
| chr4.3 | CDS | 25900781 | 25900916 | 25900781 | ID=cds.MS.gene47509.t1;Parent=MS.gene47509.t1 |
| chr4.3 | exon | 25899902 | 25900094 | 25899902 | ID=MS.gene47509.t1.exon13;Parent=MS.gene47509.t1 |
| chr4.3 | CDS | 25899902 | 25900094 | 25899902 | ID=cds.MS.gene47509.t1;Parent=MS.gene47509.t1 |
| chr4.3 | exon | 25898953 | 25899035 | 25898953 | ID=MS.gene47509.t1.exon14;Parent=MS.gene47509.t1 |
| chr4.3 | CDS | 25898953 | 25899035 | 25898953 | ID=cds.MS.gene47509.t1;Parent=MS.gene47509.t1 |
| chr4.3 | exon | 25898710 | 25898835 | 25898710 | ID=MS.gene47509.t1.exon15;Parent=MS.gene47509.t1 |
| chr4.3 | CDS | 25898710 | 25898835 | 25898710 | ID=cds.MS.gene47509.t1;Parent=MS.gene47509.t1 |
| Gene Sequence |
| Protein sequence |
