AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47673

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47673.t1 MTR_5g090430 96.806 407 12 1 1 407 1 406 0.0 813
MS.gene47673.t1 MTR_5g090430 97.619 294 6 1 114 407 1 293 0.0 597
MS.gene47673.t1 MTR_1g056490 45.382 249 118 5 156 398 200 436 1.23e-64 223
MS.gene47673.t1 MTR_8g106630 52.153 209 86 4 183 389 269 465 1.67e-64 224
MS.gene47673.t1 MTR_1g109170 51.196 209 88 4 183 389 325 521 1.30e-63 221
MS.gene47673.t1 MTR_1g109170 51.196 209 88 4 183 389 325 521 1.44e-63 221
MS.gene47673.t1 MTR_8g044260 50.467 214 92 3 178 389 240 441 1.61e-59 209
MS.gene47673.t1 MTR_4g134790 43.172 227 106 6 178 393 596 810 4.72e-52 188
MS.gene47673.t1 MTR_4g134790 43.172 227 106 6 178 393 596 810 4.76e-52 187
MS.gene47673.t1 MTR_5g075310 35.628 247 139 5 148 390 169 399 1.90e-40 153
MS.gene47673.t1 MTR_3g023880 37.811 201 111 3 184 384 409 595 5.84e-40 152
MS.gene47673.t1 MTR_6g061840 35.747 221 129 3 166 386 233 440 4.56e-38 145
MS.gene47673.t1 MTR_1g023985 39.303 201 108 3 184 384 567 753 1.30e-37 145
MS.gene47673.t1 MTR_6g061840 35.747 221 129 3 166 386 233 440 1.91e-37 144
MS.gene47673.t1 MTR_6g061840 35.747 221 129 3 166 386 233 440 2.45e-37 144
MS.gene47673.t1 MTR_1g086640 36.150 213 120 4 179 387 49 249 1.15e-36 142
MS.gene47673.t1 MTR_1g114490 40.000 180 95 2 205 384 518 684 8.89e-36 140
MS.gene47673.t1 MTR_3g054400 33.571 280 158 9 130 395 302 567 4.75e-35 138
MS.gene47673.t1 MTR_8g080240 37.811 201 107 5 185 384 2 185 1.39e-34 135
MS.gene47673.t1 MTR_8g080240 37.811 201 107 5 185 384 2 185 2.08e-34 135
MS.gene47673.t1 MTR_8g080240 37.811 201 107 5 185 384 2 185 2.61e-34 135
MS.gene47673.t1 MTR_2g098440 33.571 280 158 9 130 395 505 770 5.27e-34 135
MS.gene47673.t1 MTR_2g015320 36.066 183 103 5 184 365 50 219 1.45e-31 127
MS.gene47673.t1 MTR_3g052610 33.051 236 116 5 179 384 46 269 1.01e-30 124
MS.gene47673.t1 MTR_8g041990 32.579 221 101 5 164 384 86 258 1.23e-27 115
MS.gene47673.t1 MTR_1g088590 38.122 181 96 4 185 365 28 192 2.02e-26 112
MS.gene47673.t1 MTR_4g485610 35.088 171 96 3 218 384 49 208 2.20e-26 112
MS.gene47673.t1 MTR_4g023590 29.958 237 122 6 179 384 264 487 2.39e-25 109
MS.gene47673.t1 MTR_3g014030 37.073 205 112 6 183 385 262 451 2.47e-25 109
MS.gene47673.t1 MTR_7g095080 28.000 250 123 6 178 384 39 274 2.85e-25 108
MS.gene47673.t1 MTR_3g086770 35.122 205 117 4 183 385 262 452 5.46e-24 105
MS.gene47673.t1 MTR_0267s0070 35.043 234 129 7 157 385 889 1104 1.92e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47673.t1 AT2G30800 57.069 389 147 7 19 398 13 390 1.99e-138 427
MS.gene47673.t1 AT1G06670 48.131 428 165 8 12 394 1 416 1.87e-120 383
MS.gene47673.t1 AT1G06670 48.131 428 165 8 12 394 1 416 2.28e-120 382
MS.gene47673.t1 AT1G48650 50.935 214 91 4 178 389 290 491 5.41e-66 228
MS.gene47673.t1 AT1G48650 50.935 214 91 4 178 389 290 491 6.31e-66 228
MS.gene47673.t1 AT2G35920 46.835 237 112 4 155 389 138 362 1.86e-65 225
MS.gene47673.t1 AT2G35920 46.835 237 112 4 155 389 196 420 3.14e-65 225
MS.gene47673.t1 AT2G35920 46.835 237 112 4 155 389 228 452 3.76e-65 225
MS.gene47673.t1 AT5G04895 49.282 209 92 3 183 389 256 452 4.46e-63 219
MS.gene47673.t1 AT2G01130 49.057 212 94 3 184 393 152 351 3.50e-61 214
MS.gene47673.t1 AT2G01130 49.057 212 94 3 184 393 217 416 5.78e-61 213
MS.gene47673.t1 AT1G58060 41.850 227 108 6 178 392 605 819 6.68e-50 181
MS.gene47673.t1 AT1G58050 39.024 246 121 7 178 409 588 818 5.64e-47 173
MS.gene47673.t1 AT1G32490 37.981 208 115 3 177 384 384 577 5.73e-41 155
MS.gene47673.t1 AT1G32490 37.981 208 115 3 177 384 394 587 6.39e-41 155
MS.gene47673.t1 AT2G47250 37.559 213 117 4 179 387 57 257 1.56e-39 150
MS.gene47673.t1 AT2G35340 38.579 197 107 3 184 380 401 583 1.14e-38 149
MS.gene47673.t1 AT2G35340 38.579 197 107 3 184 380 263 445 1.57e-38 148
MS.gene47673.t1 AT4G16680 38.710 217 111 5 184 392 212 414 2.57e-37 144
MS.gene47673.t1 AT4G16680 38.710 217 111 5 184 392 132 334 4.81e-37 143
MS.gene47673.t1 AT3G62310 35.047 214 111 5 184 387 58 253 2.83e-36 139
MS.gene47673.t1 AT3G62310 35.577 208 118 4 184 387 58 253 4.51e-36 140
MS.gene47673.t1 AT3G26560 38.806 201 109 3 184 384 512 698 5.96e-36 140
MS.gene47673.t1 AT3G62310 35.047 214 111 5 184 387 58 253 6.56e-36 139
MS.gene47673.t1 AT1G27900 37.313 201 111 5 185 384 2 188 4.02e-34 133
MS.gene47673.t1 AT1G27900 37.313 201 111 5 185 384 2 188 5.75e-34 133
MS.gene47673.t1 AT1G27900 37.313 201 111 5 185 384 2 188 5.91e-34 134
MS.gene47673.t1 AT5G13010 34.404 218 122 6 172 384 540 741 7.61e-33 131
MS.gene47673.t1 AT4G18465 34.222 225 117 7 184 390 45 256 3.46e-31 126
MS.gene47673.t1 AT1G33390 30.992 242 124 6 174 384 228 457 1.13e-25 110
MS.gene47673.t1 AT1G33390 30.992 242 124 6 174 384 228 457 1.13e-25 110
MS.gene47673.t1 AT1G26370 29.719 249 119 6 178 384 32 266 1.36e-24 106
MS.gene47673.t1 AT5G10370 32.975 279 151 8 108 384 246 490 2.47e-23 103
MS.gene47673.t1 AT4G01020 36.364 209 118 5 177 384 293 487 2.50e-23 103
MS.gene47673.t1 AT2G47680 37.017 181 98 4 185 365 24 188 1.56e-22 100
MS.gene47673.t1 AT2G30800 72.340 47 13 0 352 398 1 47 3.49e-16 81.3

Find 94 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGGTCCCACAATATATTT+TGG 0.151600 5.3:+72853471 MS.gene47673:intron
TCAGGTCAAAACATACTATT+TGG 0.178819 5.3:+72855824 MS.gene47673:intron
ATCACTCCCACCCTTCTTAT+TGG 0.200185 5.3:-72852451 None:intergenic
GTACTACTGGAGTTCTATTA+AGG 0.228115 5.3:+72854530 MS.gene47673:CDS
ATTAAGGGTGTTGGTTTCTA+AGG 0.229619 5.3:+72854546 MS.gene47673:CDS
CCTGGTAGATTCATCGATTT+TGG 0.234367 5.3:-72851343 None:intergenic
AGATGAAATTACTCGGAAAT+TGG 0.304460 5.3:+72852659 MS.gene47673:CDS
AAGCCTGGAACTTGGATAAC+TGG 0.306634 5.3:-72855703 None:intergenic
TGACATCACTCACATCATTA+TGG 0.332230 5.3:+72854612 MS.gene47673:CDS
CTTAAATCTTGCCAGCTTGT+TGG 0.344951 5.3:-72851304 None:intergenic
GTCGACCACGTCGAACAAAA+AGG 0.345440 5.3:+72851281 MS.gene47673:CDS
AGACGTAGATGAGGATATAA+AGG 0.360353 5.3:-72855479 None:intergenic
GGGTTTAAGTCTAAAAGTTA+TGG 0.364494 5.3:+72852286 MS.gene47673:CDS
ACTTATCATGTGATTGTTGT+TGG 0.373431 5.3:-72855903 None:intergenic
TCTTCCTCATTTCACATTCT+CGG 0.373502 5.3:+72852488 MS.gene47673:CDS
AAGCAGGTAGTTCTCATATC+TGG 0.375216 5.3:+72853184 MS.gene47673:intron
TGGAAGCTGTAACTTCTAGA+AGG 0.380592 5.3:+72852679 MS.gene47673:CDS
TGCCCAGTTATCCAAGTTCC+AGG 0.382981 5.3:+72855700 MS.gene47673:CDS
TTGGATTATATGTGGGGTAA+GGG 0.400723 5.3:+72853490 MS.gene47673:CDS
TCTATTGTTCTATGTACTAC+TGG 0.404227 5.3:+72854517 MS.gene47673:CDS
TTTGGATTATATGTGGGGTA+AGG 0.410615 5.3:+72853489 MS.gene47673:CDS
AGAGAGAGAGGTGAGGCTGC+TGG 0.411317 5.3:+72853671 MS.gene47673:CDS
GGTTTAAGTCTAAAAGTTAT+GGG 0.423476 5.3:+72852287 MS.gene47673:CDS
TGCAAAACGACGGTCATCAT+TGG 0.428088 5.3:-72852242 None:intergenic
TACTACTGGAGTTCTATTAA+GGG 0.441536 5.3:+72854531 MS.gene47673:CDS
AGTTCCAGGCTTCACTTATC+CGG 0.446106 5.3:+72855714 MS.gene47673:CDS
TTTCAATCTTCTGATGAAGA+AGG 0.456287 5.3:+72851393 MS.gene47673:CDS
CGGCGTATCTCTGCAATGTC+AGG 0.459055 5.3:+72853544 MS.gene47673:CDS
TGGAGTTCTATTAAGGGTGT+TGG 0.459657 5.3:+72854537 MS.gene47673:CDS
GATAAGTGAAGCCTGGAACT+TGG 0.461806 5.3:-72855711 None:intergenic
TTAAGGGTGTTGGTTTCTAA+GGG 0.466090 5.3:+72854547 MS.gene47673:CDS
GCGTCGAATAATTCGAACTT+TGG 0.467161 5.3:+72851365 MS.gene47673:CDS
ACCTGGTGATGGAAACTTGA+AGG 0.469278 5.3:+72852554 MS.gene47673:CDS
TGGATTATATGTGGGGTAAG+GGG 0.477150 5.3:+72853491 MS.gene47673:CDS
TTTATATCCTCATCTACGTC+TGG 0.483477 5.3:+72855481 MS.gene47673:CDS
TGATGGAAACTTGAAGGATC+TGG 0.485301 5.3:+72852560 MS.gene47673:CDS
TCCTTCAAGTTTCCATCACC+AGG 0.489330 5.3:-72852555 None:intergenic
AGTTCGAATTATTCGACGCC+TGG 0.495276 5.3:-72851361 None:intergenic
CATTCTCGGAAGAGTCAAAA+CGG 0.495959 5.3:+72852502 MS.gene47673:CDS
CCAACATGAAGTCTGAATAT+CGG 0.496078 5.3:-72854949 None:intergenic
TCAGGATGAAATTCATGAAA+GGG 0.498098 5.3:+72854925 MS.gene47673:intron
GGATTATATGTGGGGTAAGG+GGG 0.498239 5.3:+72853492 MS.gene47673:CDS
GTCAGAAATTTCATCCTTCG+CGG 0.498896 5.3:-72854593 None:intergenic
AGAAAATCTCGCAGTATCAA+TGG 0.500493 5.3:-72855662 None:intergenic
GGAAGAGTCAAAACGGGCAA+TGG 0.507368 5.3:+72852509 MS.gene47673:CDS
GTTCTCATATCTGGTGAGAC+TGG 0.511204 5.3:+72853193 MS.gene47673:CDS
GCAGAGTACAAGTTTGAAGC+TGG 0.513941 5.3:+72852214 MS.gene47673:intron
TTCAGGATGAAATTCATGAA+AGG 0.519015 5.3:+72854924 MS.gene47673:intron
GAAGAGTCAAAACGGGCAAT+GGG 0.522524 5.3:+72852510 MS.gene47673:CDS
TATAATCCAAAATATATTGT+GGG 0.534277 5.3:-72853477 None:intergenic
GACGTAGATGAGGATATAAA+GGG 0.540193 5.3:-72855478 None:intergenic
TGGAGAAAATGTTGGATACA+AGG 0.545298 5.3:+72853691 MS.gene47673:CDS
GGTCAAAACATACTATTTGG+AGG 0.545786 5.3:+72855827 MS.gene47673:intron
GCATCCTTGTAAGATGCAAT+CGG 0.548739 5.3:-72852914 None:intergenic
TCAGAAATTTCATCCTTCGC+GGG 0.550635 5.3:-72854592 None:intergenic
AGATACTTTGCACTCAGCCT+CGG 0.550947 5.3:+72853524 MS.gene47673:CDS
ATTCTCGGAAGAGTCAAAAC+GGG 0.554446 5.3:+72852503 MS.gene47673:CDS
GGTTCGAAAAGCCAATAAGA+AGG 0.558093 5.3:+72852440 MS.gene47673:CDS
TGGGAAGGAGAGGAGATTGT+CGG 0.558526 5.3:+72852419 MS.gene47673:CDS
ATATAATCCAAAATATATTG+TGG 0.559439 5.3:-72853478 None:intergenic
AGTACCGGATAAGTGAAGCC+TGG 0.560241 5.3:-72855718 None:intergenic
GAAAGAATCTCTAGAGAGAG+AGG 0.563993 5.3:+72853659 MS.gene47673:CDS
TGTGTAGGACTGGGAAGGAG+AGG 0.570622 5.3:+72852409 MS.gene47673:intron
AGCCTGGAACTTGGATAACT+GGG 0.571228 5.3:-72855702 None:intergenic
GACTGTATCTGACTTGAAAG+AGG 0.575980 5.3:+72852704 MS.gene47673:CDS
GGAAGCTGTAACTTCTAGAA+GGG 0.577224 5.3:+72852680 MS.gene47673:CDS
CCAAAATCGATGAATCTACC+AGG 0.579340 5.3:+72851343 MS.gene47673:CDS
GTAAAATCAAGCAATGATGA+TGG 0.581090 5.3:+72855864 MS.gene47673:CDS
ATCAGCAGTTGAATCTCACC+AGG 0.588388 5.3:+72852943 MS.gene47673:CDS
TTTGGAGGATGTACTTTCTG+CGG 0.588477 5.3:+72855842 MS.gene47673:CDS
CCGATATTCAGACTTCATGT+TGG 0.589369 5.3:+72854949 MS.gene47673:CDS
GCTACCGATTGCATCTTACA+AGG 0.590410 5.3:+72852910 MS.gene47673:CDS
ACTTCATGTTGGCAATAATG+AGG 0.594931 5.3:+72854960 MS.gene47673:CDS
GTATAGCTAACGCAAGACAT+AGG 0.595255 5.3:+72852601 MS.gene47673:CDS
GAGGCTGCTGGAGAAAATGT+TGG 0.595937 5.3:+72853683 MS.gene47673:CDS
ATATCTGGTGAGACTGGCTG+TGG 0.596856 5.3:+72853199 MS.gene47673:CDS
TGTTGTTGGAATACTAAATG+TGG 0.598433 5.3:-72855889 None:intergenic
TCTTCCGAGAATGTGAAATG+AGG 0.601540 5.3:-72852492 None:intergenic
CGAAAAGCCAATAAGAAGGG+TGG 0.602258 5.3:+72852444 MS.gene47673:CDS
TGGTTTCTAAGGGTTCTCGT+CGG 0.608074 5.3:+72854557 MS.gene47673:CDS
CAGATACGCTTAGATAGCAA+AGG 0.615701 5.3:+72854481 MS.gene47673:intron
GAAAAGCCAATAAGAAGGGT+GGG 0.636827 5.3:+72852445 MS.gene47673:CDS
TGACAAAAGATGAAATTACT+CGG 0.639079 5.3:+72852652 MS.gene47673:CDS
GGAAACTTGAAGGATCTGGT+TGG 0.640249 5.3:+72852564 MS.gene47673:CDS
GTCAATGAAGAATCCCGCGA+AGG 0.649567 5.3:+72854579 MS.gene47673:CDS
ATACGCTTAGATAGCAAAGG+TGG 0.651068 5.3:+72854484 MS.gene47673:CDS
CCAATAAATGTGCAAAACGA+CGG 0.652431 5.3:-72852252 None:intergenic
GTTCGAAAAGCCAATAAGAA+GGG 0.653407 5.3:+72852441 MS.gene47673:CDS
TAACTGACCAGACGTAGATG+AGG 0.661853 5.3:-72855488 None:intergenic
AATCTCTAGAGAGAGAGGTG+AGG 0.664499 5.3:+72853664 MS.gene47673:CDS
TTCAAGTTTCCATCACCAGG+TGG 0.683429 5.3:-72852552 None:intergenic
TGGCTGTGGAAAGACTACTC+AGG 0.708313 5.3:+72853213 MS.gene47673:CDS
GACATTGCAGAGATACGCCG+AGG 0.717734 5.3:-72853541 None:intergenic
GATCTGGTTGGAGAAAAGAG+TGG 0.731307 5.3:+72852576 MS.gene47673:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGACTTAATTATTATTA+AGG + chr5.3:72854292-72854311 MS.gene47673:intron 10.0%
!! TTAATAATAATTAAGTCATA+TGG - chr5.3:72854293-72854312 None:intergenic 10.0%
!! TTATCAACAAAATATTATAT+GGG + chr5.3:72851446-72851465 MS.gene47673:intron 10.0%
!! TTTATCAACAAAATATTATA+TGG + chr5.3:72851445-72851464 MS.gene47673:intron 10.0%
!!! ATAATATTTTGTTGATAAAA+CGG - chr5.3:72851444-72851463 None:intergenic 10.0%
!!! ATTGTTTATTTTTAAGTTAT+AGG - chr5.3:72854460-72854479 None:intergenic 10.0%
!!! TAAAATAAAGTTTTTTTACA+GGG + chr5.3:72852088-72852107 MS.gene47673:intron 10.0%
!! AACAGAAAAAAAAAATCTTT+CGG - chr5.3:72855375-72855394 None:intergenic 15.0%
!! ATATAATCCAAAATATATTG+TGG - chr5.3:72853481-72853500 None:intergenic 15.0%
!! TAAACCTAAATAATTTCATT+GGG - chr5.3:72851613-72851632 None:intergenic 15.0%
!! TATAATCCAAAATATATTGT+GGG - chr5.3:72853480-72853499 None:intergenic 15.0%
!! TCATGTATTAGTAAAAATAA+GGG + chr5.3:72854343-72854362 MS.gene47673:intron 15.0%
!! TTAAACCTAAATAATTTCAT+TGG - chr5.3:72851614-72851633 None:intergenic 15.0%
!!! AAATTGATTCATATTGAAAT+TGG - chr5.3:72852012-72852031 None:intergenic 15.0%
!!! AATATATTTTGGATTATATG+TGG + chr5.3:72853482-72853501 MS.gene47673:CDS 15.0%
!!! ATATATTTTGGATTATATGT+GGG + chr5.3:72853483-72853502 MS.gene47673:CDS 15.0%
!!! ATCTAATAGCATAATTTTTA+GGG + chr5.3:72855117-72855136 MS.gene47673:intron 15.0%
!!! CTAAAATAAAGTTTTTTTAC+AGG + chr5.3:72852087-72852106 MS.gene47673:intron 15.0%
!!! CTTTCTTTATTTTTACTTTT+TGG + chr5.3:72855196-72855215 MS.gene47673:intron 15.0%
!!! CTTTTTGTTTTTGATTAATT+GGG + chr5.3:72851506-72851525 MS.gene47673:intron 15.0%
!!! TCTTTTTGTTTTTGATTAAT+TGG + chr5.3:72851505-72851524 MS.gene47673:intron 15.0%
!!! TTAATATTAATTACTGATTC+AGG + chr5.3:72853453-72853472 MS.gene47673:intron 15.0%
!!! TTATTATAATTTGTTGCTAA+CGG + chr5.3:72853285-72853304 MS.gene47673:intron 15.0%
!!! TTTATTTTTACTTTTTGGAT+AGG + chr5.3:72855201-72855220 MS.gene47673:intron 15.0%
!! AAATAAACATACTACAGAAA+AGG - chr5.3:72852810-72852829 None:intergenic 20.0%
!! AAGACTTTGAATAATGATTA+TGG - chr5.3:72854406-72854425 None:intergenic 20.0%
!! AATAAACATACTACAGAAAA+GGG - chr5.3:72852809-72852828 None:intergenic 20.0%
!! AATTATAATAAATGACGTTG+TGG - chr5.3:72853276-72853295 None:intergenic 20.0%
!! AGATATGTATTGTAAAAATG+AGG + chr5.3:72854885-72854904 MS.gene47673:intron 20.0%
!! ATAGGATATATCAGATAAAA+GGG - chr5.3:72854442-72854461 None:intergenic 20.0%
!! ATATGATTTGAAAAAGAACT+TGG - chr5.3:72855560-72855579 None:intergenic 20.0%
!! CAAAAAAATTCATATACACA+AGG - chr5.3:72852764-72852783 None:intergenic 20.0%
!! CAAAAACTGTCAAAAAATAT+AGG - chr5.3:72853400-72853419 None:intergenic 20.0%
!! GTCATGTATTAGTAAAAATA+AGG + chr5.3:72854342-72854361 MS.gene47673:intron 20.0%
!! GTTAAAATATAAGCTGAAAT+GGG - chr5.3:72855594-72855613 None:intergenic 20.0%
!! TAATAGAAAGTAATGAACAA+AGG - chr5.3:72853757-72853776 None:intergenic 20.0%
!! TAATGAGGTATAAATTTGAA+AGG + chr5.3:72854975-72854994 MS.gene47673:intron 20.0%
!! TACTAACAAGTATGAAATAT+TGG - chr5.3:72851857-72851876 None:intergenic 20.0%
!! TATAGGATATATCAGATAAA+AGG - chr5.3:72854443-72854462 None:intergenic 20.0%
!! TATATCCATTTATGAAATCT+GGG + chr5.3:72852171-72852190 MS.gene47673:intron 20.0%
!! TATGATTTGAAAAAGAACTT+GGG - chr5.3:72855559-72855578 None:intergenic 20.0%
!! TATTAGATGCAAATTATCTT+TGG - chr5.3:72855105-72855124 None:intergenic 20.0%
!! TATTTAAGCCAAATGTTTAT+TGG + chr5.3:72852121-72852140 MS.gene47673:intron 20.0%
!! TTAAAAGTTAAAACTCTTCA+AGG + chr5.3:72855280-72855299 MS.gene47673:intron 20.0%
!! TTAAGTTATTGAATGTTGAA+GGG - chr5.3:72854065-72854084 None:intergenic 20.0%
!!! AATTTCATCTTTTGTCATTA+CGG - chr5.3:72852649-72852668 None:intergenic 20.0%
!!! ACGTTCAATTTATTCATTTT+AGG + chr5.3:72851796-72851815 MS.gene47673:intron 20.0%
!!! CACTTTTTTTATTGATATGT+TGG + chr5.3:72853907-72853926 MS.gene47673:intron 20.0%
!!! CATCTAATAGCATAATTTTT+AGG + chr5.3:72855116-72855135 MS.gene47673:intron 20.0%
!!! CATTGACATTTTAAATATGT+TGG + chr5.3:72853061-72853080 MS.gene47673:intron 20.0%
!!! CTTGTGTATATGAATTTTTT+TGG + chr5.3:72852762-72852781 MS.gene47673:intron 20.0%
!!! TATATTTTGGATTATATGTG+GGG + chr5.3:72853484-72853503 MS.gene47673:CDS 20.0%
!!! TTTGTTTTTATTTTCAAGCT+TGG + chr5.3:72851564-72851583 MS.gene47673:intron 20.0%
! AAAAAAAAAATCTTTCGGAG+GGG - chr5.3:72855370-72855389 None:intergenic 25.0%
! AGAAAAAAAAAATCTTTCGG+AGG - chr5.3:72855372-72855391 None:intergenic 25.0%
! ATAAACATACTACAGAAAAG+GGG - chr5.3:72852808-72852827 None:intergenic 25.0%
! ATCATGTGATTGCAAAAAAT+TGG - chr5.3:72853873-72853892 None:intergenic 25.0%
! ATGACCCAATGAAATTATTT+AGG + chr5.3:72851606-72851625 MS.gene47673:intron 25.0%
! CAACTAAAAACAAAACAAGA+AGG + chr5.3:72852034-72852053 MS.gene47673:intron 25.0%
! CAATTCTTCAATGGAATAAT+TGG + chr5.3:72852323-72852342 MS.gene47673:intron 25.0%
! CTATATCCATTTATGAAATC+TGG + chr5.3:72852170-72852189 MS.gene47673:intron 25.0%
! GAAAAAAAAAATCTTTCGGA+GGG - chr5.3:72855371-72855390 None:intergenic 25.0%
! GGTTAAAATATAAGCTGAAA+TGG - chr5.3:72855595-72855614 None:intergenic 25.0%
! GGTTTAAGTCTAAAAGTTAT+GGG + chr5.3:72852287-72852306 MS.gene47673:CDS 25.0%
! GTTAAGTTATTGAATGTTGA+AGG - chr5.3:72854066-72854085 None:intergenic 25.0%
! TAAAAGAAAGAAATGAGATG+AGG - chr5.3:72854022-72854041 None:intergenic 25.0%
! TGACAAAAGATGAAATTACT+CGG + chr5.3:72852652-72852671 MS.gene47673:CDS 25.0%
! TGACAATTCCAATAAACATT+TGG - chr5.3:72852132-72852151 None:intergenic 25.0%
! TTCAATGGAATAATTGGTAA+AGG + chr5.3:72852329-72852348 MS.gene47673:intron 25.0%
! TTGATTGTCAATAAATCACA+AGG + chr5.3:72853833-72853852 MS.gene47673:intron 25.0%
! TTTACAATACATATCTTGCA+AGG - chr5.3:72854881-72854900 None:intergenic 25.0%
!! AAGTGATTATGTTAGTTTCT+AGG + chr5.3:72855235-72855254 MS.gene47673:intron 25.0%
!! ATTTCATCTTTTGTCATTAC+GGG - chr5.3:72852648-72852667 None:intergenic 25.0%
!! CAAGATTTAGTTTAACTCAA+TGG + chr5.3:72855162-72855181 MS.gene47673:intron 25.0%
!! CGAGATTTTCTCAATATTTT+GGG + chr5.3:72855674-72855693 MS.gene47673:CDS 25.0%
!! GAATTGGATATTTGCATTTT+AGG + chr5.3:72851539-72851558 MS.gene47673:intron 25.0%
!! GAGATTTTCTCAATATTTTG+GGG + chr5.3:72855675-72855694 MS.gene47673:CDS 25.0%
!! TTTTAACCTTATCTGTTTTC+TGG + chr5.3:72855607-72855626 MS.gene47673:intron 25.0%
!!! AGATTTTCTCAATATTTTGG+GGG + chr5.3:72855676-72855695 MS.gene47673:CDS 25.0%
!!! TAATTGGTGTTTTGTTGTTT+TGG + chr5.3:72851905-72851924 MS.gene47673:intron 25.0%
!!! TATTTGCTATTTCTTTCTTC+AGG + chr5.3:72855806-72855825 MS.gene47673:intron 25.0%
AAAAAAAAATCTTTCGGAGG+GGG - chr5.3:72855369-72855388 None:intergenic 30.0%
AAAATTGTGAATTGAGTCGT+TGG - chr5.3:72853985-72854004 None:intergenic 30.0%
AAACACCCAGATTTCATAAA+TGG - chr5.3:72852179-72852198 None:intergenic 30.0%
ACAAAACAAGAAGGATCAAA+AGG + chr5.3:72852043-72852062 MS.gene47673:intron 30.0%
ACACGTGAGAATTATATGAA+AGG - chr5.3:72854168-72854187 None:intergenic 30.0%
ACATTTATTGGCCCAAAAAA+TGG + chr5.3:72852264-72852283 MS.gene47673:CDS 30.0%
ACCATGTGGATAAATTTCAA+AGG - chr5.3:72852998-72853017 None:intergenic 30.0%
ACTCCAGATCCTAATTAAAT+AGG - chr5.3:72854324-72854343 None:intergenic 30.0%
AGATGAAATTACTCGGAAAT+TGG + chr5.3:72852659-72852678 MS.gene47673:CDS 30.0%
AGCAAAAGAAAACATTAACC+TGG - chr5.3:72852964-72852983 None:intergenic 30.0%
AGGTCTTTCCCTATTTAATT+AGG + chr5.3:72854312-72854331 MS.gene47673:intron 30.0%
ATAGGTCCATATACAATGAT+GGG - chr5.3:72853382-72853401 None:intergenic 30.0%
ATTTATTGGCCCAAAAAATG+GGG + chr5.3:72852266-72852285 MS.gene47673:CDS 30.0%
CAATTTCAACACTTGAAGAT+TGG + chr5.3:72853116-72853135 MS.gene47673:intron 30.0%
CATTCTATGTTCAAGAATCT+TGG + chr5.3:72854830-72854849 MS.gene47673:intron 30.0%
CATTTATTGGCCCAAAAAAT+GGG + chr5.3:72852265-72852284 MS.gene47673:CDS 30.0%
CCAATTACTAATAGCAGAAA+TGG - chr5.3:72851892-72851911 None:intergenic 30.0%
CCATTTCTGCTATTAGTAAT+TGG + chr5.3:72851889-72851908 MS.gene47673:intron 30.0%
CTCCAGATCCTAATTAAATA+GGG - chr5.3:72854323-72854342 None:intergenic 30.0%
GCATAAGCAAGCATAAAATT+GGG + chr5.3:72855062-72855081 MS.gene47673:intron 30.0%
GGGTTTAAGTCTAAAAGTTA+TGG + chr5.3:72852286-72852305 MS.gene47673:CDS 30.0%
GTAAAATCAAGCAATGATGA+TGG + chr5.3:72855864-72855883 MS.gene47673:CDS 30.0%
TACTACTGGAGTTCTATTAA+GGG + chr5.3:72854531-72854550 MS.gene47673:CDS 30.0%
TATAGGTCCATATACAATGA+TGG - chr5.3:72853383-72853402 None:intergenic 30.0%
TCAATCTACTCTATAAGTAC+CGG - chr5.3:72855736-72855755 None:intergenic 30.0%
TCAGAAACTAGACATAGAAT+GGG - chr5.3:72853641-72853660 None:intergenic 30.0%
TCAGGATGAAATTCATGAAA+GGG + chr5.3:72854925-72854944 MS.gene47673:intron 30.0%
TCAGGTCAAAACATACTATT+TGG + chr5.3:72855824-72855843 MS.gene47673:intron 30.0%
TCTATTGTTCTATGTACTAC+TGG + chr5.3:72854517-72854536 MS.gene47673:CDS 30.0%
TGCATAAGCAAGCATAAAAT+TGG + chr5.3:72855061-72855080 MS.gene47673:intron 30.0%
TGTTGTTGGAATACTAAATG+TGG - chr5.3:72855892-72855911 None:intergenic 30.0%
TTCAGAAACTAGACATAGAA+TGG - chr5.3:72853642-72853661 None:intergenic 30.0%
TTCAGGATGAAATTCATGAA+AGG + chr5.3:72854924-72854943 MS.gene47673:intron 30.0%
TTCATGTTAAATCATCTCAC+AGG + chr5.3:72854228-72854247 MS.gene47673:intron 30.0%
TTCCCTATTTAATTAGGATC+TGG + chr5.3:72854318-72854337 MS.gene47673:intron 30.0%
TTTCAATCTTCTGATGAAGA+AGG + chr5.3:72851393-72851412 MS.gene47673:CDS 30.0%
! GCGAGATTTTCTCAATATTT+TGG + chr5.3:72855673-72855692 MS.gene47673:CDS 30.0%
! TTTAGTTTAACTCAATGGCA+TGG + chr5.3:72855167-72855186 MS.gene47673:intron 30.0%
! TTTTATGCTTGCTTATGCAA+CGG - chr5.3:72855060-72855079 None:intergenic 30.0%
!! CAATCTTCAAGTGTTGAAAT+TGG - chr5.3:72853118-72853137 None:intergenic 30.0%
!! TGATGTTTTTATCCAGCTTT+GGG + chr5.3:72853339-72853358 MS.gene47673:intron 30.0%
!! TTGATGTTTTTATCCAGCTT+TGG + chr5.3:72853338-72853357 MS.gene47673:intron 30.0%
!!! AGACTTAAACCCCATTTTTT+GGG - chr5.3:72852278-72852297 None:intergenic 30.0%
!!! ATTGGGTGTTTTGTTTGAAT+TGG + chr5.3:72851523-72851542 MS.gene47673:intron 30.0%
!!! CATAATTTTTAGGGTAGAGT+TGG + chr5.3:72855126-72855145 MS.gene47673:intron 30.0%
!!! TAGACTTAAACCCCATTTTT+TGG - chr5.3:72852279-72852298 None:intergenic 30.0%
AAAAAAAATCTTTCGGAGGG+GGG - chr5.3:72855368-72855387 None:intergenic 35.0%
AAAACGGCGAAAAAAGCAAA+AGG - chr5.3:72851428-72851447 None:intergenic 35.0%
AAACGGCGAAAAAAGCAAAA+GGG - chr5.3:72851427-72851446 None:intergenic 35.0%
AACACACCAGAAAACAGATA+AGG - chr5.3:72855616-72855635 None:intergenic 35.0%
AATGAGATGAGGAAGAGAAA+AGG - chr5.3:72854011-72854030 None:intergenic 35.0%
AATTTATCCACATGGTAGCT+TGG + chr5.3:72853002-72853021 MS.gene47673:intron 35.0%
ACACTTTCCATCAGAAATGT+TGG - chr5.3:72851730-72851749 None:intergenic 35.0%
ACTTCATGTTGGCAATAATG+AGG + chr5.3:72854960-72854979 MS.gene47673:CDS 35.0%
AGAAAATCTCGCAGTATCAA+TGG - chr5.3:72855665-72855684 None:intergenic 35.0%
AGACGTAGATGAGGATATAA+AGG - chr5.3:72855482-72855501 None:intergenic 35.0%
AGTACTCCCATCATTGTATA+TGG + chr5.3:72853373-72853392 MS.gene47673:intron 35.0%
CCAACATGAAGTCTGAATAT+CGG - chr5.3:72854952-72854971 None:intergenic 35.0%
CCAATAAATGTGCAAAACGA+CGG - chr5.3:72852255-72852274 None:intergenic 35.0%
GACGTAGATGAGGATATAAA+GGG - chr5.3:72855481-72855500 None:intergenic 35.0%
GGTCAAAACATACTATTTGG+AGG + chr5.3:72855827-72855846 MS.gene47673:intron 35.0%
GTAAGCTATTGTATCCATGT+AGG - chr5.3:72855330-72855349 None:intergenic 35.0%
GTACTACTGGAGTTCTATTA+AGG + chr5.3:72854530-72854549 MS.gene47673:CDS 35.0%
GTCAAACAGAATGTTTCACA+TGG - chr5.3:72853427-72853446 None:intergenic 35.0%
GTGACATTCATTTCTTGTTC+AGG + chr5.3:72854907-72854926 MS.gene47673:intron 35.0%
GTTCGAAAAGCCAATAAGAA+GGG + chr5.3:72852441-72852460 MS.gene47673:CDS 35.0%
TCTTCCTCATTTCACATTCT+CGG + chr5.3:72852488-72852507 MS.gene47673:CDS 35.0%
TGAACAGCACAATTCTTCAA+TGG + chr5.3:72852314-72852333 MS.gene47673:intron 35.0%
TGACATCACTCACATCATTA+TGG + chr5.3:72854612-72854631 MS.gene47673:CDS 35.0%
TGGAGAAAATGTTGGATACA+AGG + chr5.3:72853691-72853710 MS.gene47673:CDS 35.0%
TGGTAAAGGAAGAATGTGTT+TGG + chr5.3:72852343-72852362 MS.gene47673:intron 35.0%
TGTAACACCAACATTTCTGA+TGG + chr5.3:72851720-72851739 MS.gene47673:intron 35.0%
TTCTGGTGTGTTCTAATGTT+AGG + chr5.3:72855624-72855643 MS.gene47673:intron 35.0%
TTGGATTATATGTGGGGTAA+GGG + chr5.3:72853490-72853509 MS.gene47673:CDS 35.0%
TTGTGAGATCATTCGTCTTA+AGG + chr5.3:72855393-72855412 MS.gene47673:intron 35.0%
TTTATATCCTCATCTACGTC+TGG + chr5.3:72855481-72855500 MS.gene47673:CDS 35.0%
TTTATGCTTGCTTATGCAAC+GGG - chr5.3:72855059-72855078 None:intergenic 35.0%
TTTGCGTTTCTTTGTAGCAA+TGG + chr5.3:72853722-72853741 MS.gene47673:intron 35.0%
TTTGGATTATATGTGGGGTA+AGG + chr5.3:72853489-72853508 MS.gene47673:CDS 35.0%
! TCAGCTTTTACTTTCTACTG+TGG + chr5.3:72855004-72855023 MS.gene47673:intron 35.0%
! TCAGGTCCCACAATATATTT+TGG + chr5.3:72853471-72853490 MS.gene47673:intron 35.0%
! TTATTTGCTCATTTTCCACC+TGG + chr5.3:72852537-72852556 MS.gene47673:CDS 35.0%
! TTTCTGATGGAAAGTGTGTT+TGG + chr5.3:72851733-72851752 MS.gene47673:intron 35.0%
!! ACAAGGTCTTTGAAGTTGAA+TGG - chr5.3:72852747-72852766 None:intergenic 35.0%
!! ATTAAGGGTGTTGGTTTCTA+AGG + chr5.3:72854546-72854565 MS.gene47673:CDS 35.0%
!! GCCTTTGAAATTTATCCACA+TGG + chr5.3:72852994-72853013 MS.gene47673:intron 35.0%
!! TCTTTGAAGTTGAATGGAGA+GGG - chr5.3:72852741-72852760 None:intergenic 35.0%
!! TTAAGGGTGTTGGTTTCTAA+GGG + chr5.3:72854547-72854566 MS.gene47673:CDS 35.0%
!!! GGCTGTTTTCATTTTTTCGA+TGG + chr5.3:72851467-72851486 MS.gene47673:intron 35.0%
!!! GTAGATTCATCGATTTTGGT+AGG - chr5.3:72851342-72851361 None:intergenic 35.0%
AAAAAAATCTTTCGGAGGGG+GGG - chr5.3:72855367-72855386 None:intergenic 40.0%
AAGCAGGTAGTTCTCATATC+TGG + chr5.3:72853184-72853203 MS.gene47673:intron 40.0%
AGGGGGGGATTAAATATAAC+AGG - chr5.3:72855352-72855371 None:intergenic 40.0%
ATACGCTTAGATAGCAAAGG+TGG + chr5.3:72854484-72854503 MS.gene47673:CDS 40.0%
ATTCTCGGAAGAGTCAAAAC+GGG + chr5.3:72852503-72852522 MS.gene47673:CDS 40.0%
CAAGCATAAAATTGGGCTGT+AGG + chr5.3:72855069-72855088 MS.gene47673:intron 40.0%
CAGATACGCTTAGATAGCAA+AGG + chr5.3:72854481-72854500 MS.gene47673:intron 40.0%
CATTCTCGGAAGAGTCAAAA+CGG + chr5.3:72852502-72852521 MS.gene47673:CDS 40.0%
CCAAAATCGATGAATCTACC+AGG + chr5.3:72851343-72851362 MS.gene47673:CDS 40.0%
CCGATATTCAGACTTCATGT+TGG + chr5.3:72854949-72854968 MS.gene47673:CDS 40.0%
CCTTGCATTTGTTTCAAAGC+AGG + chr5.3:72853168-72853187 MS.gene47673:intron 40.0%
CTTAAATCTTGCCAGCTTGT+TGG - chr5.3:72851307-72851326 None:intergenic 40.0%
GAAAAGCCAATAAGAAGGGT+GGG + chr5.3:72852445-72852464 MS.gene47673:CDS 40.0%
GCATCCTTGTAAGATGCAAT+CGG - chr5.3:72852917-72852936 None:intergenic 40.0%
GCGTCGAATAATTCGAACTT+TGG + chr5.3:72851365-72851384 MS.gene47673:CDS 40.0%
GGTTCGAAAAGCCAATAAGA+AGG + chr5.3:72852440-72852459 MS.gene47673:CDS 40.0%
GTATAGCTAACGCAAGACAT+AGG + chr5.3:72852601-72852620 MS.gene47673:CDS 40.0%
GTCAGAAATTTCATCCTTCG+CGG - chr5.3:72854596-72854615 None:intergenic 40.0%
TCAGAAATTTCATCCTTCGC+GGG - chr5.3:72854595-72854614 None:intergenic 40.0%
TCTTCCGAGAATGTGAAATG+AGG - chr5.3:72852495-72852514 None:intergenic 40.0%
TGATGGAAACTTGAAGGATC+TGG + chr5.3:72852560-72852579 MS.gene47673:CDS 40.0%
TGGAAGCTGTAACTTCTAGA+AGG + chr5.3:72852679-72852698 MS.gene47673:CDS 40.0%
TGGATTATATGTGGGGTAAG+GGG + chr5.3:72853491-72853510 MS.gene47673:CDS 40.0%
TTCGTCTTAAGGAGTTTGTC+TGG + chr5.3:72855404-72855423 MS.gene47673:intron 40.0%
TTGTATCCATGTAGGTAGCT+TGG - chr5.3:72855322-72855341 None:intergenic 40.0%
TTTGGAGGATGTACTTTCTG+CGG + chr5.3:72855842-72855861 MS.gene47673:CDS 40.0%
! AATGAACCTGCCTTTTGTGT+AGG + chr5.3:72852394-72852413 MS.gene47673:intron 40.0%
! GAAAGAATCTCTAGAGAGAG+AGG + chr5.3:72853659-72853678 MS.gene47673:CDS 40.0%
! GACTGTATCTGACTTGAAAG+AGG + chr5.3:72852704-72852723 MS.gene47673:CDS 40.0%
! GGAAGCTGTAACTTCTAGAA+GGG + chr5.3:72852680-72852699 MS.gene47673:CDS 40.0%
! TGGAGTTCTATTAAGGGTGT+TGG + chr5.3:72854537-72854556 MS.gene47673:CDS 40.0%
! TTTGAAGTTGAATGGAGAGG+GGG - chr5.3:72852739-72852758 None:intergenic 40.0%
!! ACAATGATGGGAGTACTTGT+GGG - chr5.3:72853370-72853389 None:intergenic 40.0%
!! ATTTTAGGTAGTGTCGTGTC+CGG + chr5.3:72851811-72851830 MS.gene47673:intron 40.0%
!! CCGTCGTTTTGCACATTTAT+TGG + chr5.3:72852252-72852271 MS.gene47673:CDS 40.0%
!! CCTGCTTTGAAACAAATGCA+AGG - chr5.3:72853171-72853190 None:intergenic 40.0%
!! CTTTGAAGTTGAATGGAGAG+GGG - chr5.3:72852740-72852759 None:intergenic 40.0%
!! GTCTTTGAAGTTGAATGGAG+AGG - chr5.3:72852742-72852761 None:intergenic 40.0%
!! TACAATGATGGGAGTACTTG+TGG - chr5.3:72853371-72853390 None:intergenic 40.0%
!!! CCTGGTAGATTCATCGATTT+TGG - chr5.3:72851346-72851365 None:intergenic 40.0%
AAGCCTGGAACTTGGATAAC+TGG - chr5.3:72855706-72855725 None:intergenic 45.0%
AGATACTTTGCACTCAGCCT+CGG + chr5.3:72853524-72853543 MS.gene47673:CDS 45.0%
AGCCTGGAACTTGGATAACT+GGG - chr5.3:72855705-72855724 None:intergenic 45.0%
AGTTCCAGGCTTCACTTATC+CGG + chr5.3:72855714-72855733 MS.gene47673:CDS 45.0%
AGTTCGAATTATTCGACGCC+TGG - chr5.3:72851364-72851383 None:intergenic 45.0%
ATCACTCCCACCCTTCTTAT+TGG - chr5.3:72852454-72852473 None:intergenic 45.0%
ATCAGCAGTTGAATCTCACC+AGG + chr5.3:72852943-72852962 MS.gene47673:CDS 45.0%
ATCCATGTAGGTAGCTTGGT+TGG - chr5.3:72855318-72855337 None:intergenic 45.0%
CGAAAAGCCAATAAGAAGGG+TGG + chr5.3:72852444-72852463 MS.gene47673:CDS 45.0%
GAACAAAAAGGCCAACAAGC+TGG + chr5.3:72851293-72851312 MS.gene47673:CDS 45.0%
GAAGAGTCAAAACGGGCAAT+GGG + chr5.3:72852510-72852529 MS.gene47673:CDS 45.0%
GAAGTGACCAATGCTAGGAA+TGG - chr5.3:72854102-72854121 None:intergenic 45.0%
GATAAGTGAAGCCTGGAACT+TGG - chr5.3:72855714-72855733 None:intergenic 45.0%
GATCTGGTTGGAGAAAAGAG+TGG + chr5.3:72852576-72852595 MS.gene47673:CDS 45.0%
GCAAGTTCCATTCCTAGCAT+TGG + chr5.3:72854092-72854111 MS.gene47673:intron 45.0%
GGAAACTTGAAGGATCTGGT+TGG + chr5.3:72852564-72852583 MS.gene47673:CDS 45.0%
GGATTATATGTGGGGTAAGG+GGG + chr5.3:72853492-72853511 MS.gene47673:CDS 45.0%
GTATCTCTGCAATGTCAGGT+GGG + chr5.3:72853548-72853567 MS.gene47673:intron 45.0%
GTTCTCATATCTGGTGAGAC+TGG + chr5.3:72853193-72853212 MS.gene47673:CDS 45.0%
TAACTGACCAGACGTAGATG+AGG - chr5.3:72855491-72855510 None:intergenic 45.0%
TACCAACCAAGCTACCTACA+TGG + chr5.3:72855313-72855332 MS.gene47673:intron 45.0%
TCTGTAACCAAGCTACCATG+TGG - chr5.3:72853012-72853031 None:intergenic 45.0%
TGAATTGAGTCGTTGGCAGT+GGG - chr5.3:72853978-72853997 None:intergenic 45.0%
TGCAAAACGACGGTCATCAT+TGG - chr5.3:72852245-72852264 None:intergenic 45.0%
TTGAAGTTGAATGGAGAGGG+GGG - chr5.3:72852738-72852757 None:intergenic 45.0%
! AATCTCTAGAGAGAGAGGTG+AGG + chr5.3:72853664-72853683 MS.gene47673:CDS 45.0%
! GCAGAGTACAAGTTTGAAGC+TGG + chr5.3:72852214-72852233 MS.gene47673:intron 45.0%
! GCTACCGATTGCATCTTACA+AGG + chr5.3:72852910-72852929 MS.gene47673:CDS 45.0%
! TCCTTCAAGTTTCCATCACC+AGG - chr5.3:72852558-72852577 None:intergenic 45.0%
! TGGTTTCTAAGGGTTCTCGT+CGG + chr5.3:72854557-72854576 MS.gene47673:CDS 45.0%
! TTCAAGTTTCCATCACCAGG+TGG - chr5.3:72852555-72852574 None:intergenic 45.0%
!! ACCTGGTGATGGAAACTTGA+AGG + chr5.3:72852554-72852573 MS.gene47673:CDS 45.0%
ACAAACACAGACACCGACAC+CGG - chr5.3:72851833-72851852 None:intergenic 50.0%
CCTTCCCAGTCCTACACAAA+AGG - chr5.3:72852407-72852426 None:intergenic 50.0%
CGTATCTCTGCAATGTCAGG+TGG + chr5.3:72853547-72853566 MS.gene47673:intron 50.0%
GAAGCGAAGTGACCAATGCT+AGG - chr5.3:72854107-72854126 None:intergenic 50.0%
GAATTGAGTCGTTGGCAGTG+GGG - chr5.3:72853977-72853996 None:intergenic 50.0%
GAGGCTGCTGGAGAAAATGT+TGG + chr5.3:72853683-72853702 MS.gene47673:CDS 50.0%
GGAAGAGTCAAAACGGGCAA+TGG + chr5.3:72852509-72852528 MS.gene47673:CDS 50.0%
GTCAATGAAGAATCCCGCGA+AGG + chr5.3:72854579-72854598 MS.gene47673:CDS 50.0%
GTCGACCACGTCGAACAAAA+AGG + chr5.3:72851281-72851300 MS.gene47673:CDS 50.0%
GTGAATTGAGTCGTTGGCAG+TGG - chr5.3:72853979-72853998 None:intergenic 50.0%
TGAAGTTGAATGGAGAGGGG+GGG - chr5.3:72852737-72852756 None:intergenic 50.0%
TGCCCAGTTATCCAAGTTCC+AGG + chr5.3:72855700-72855719 MS.gene47673:CDS 50.0%
TGGCTGTGGAAAGACTACTC+AGG + chr5.3:72853213-72853232 MS.gene47673:CDS 50.0%
TGGGAAGGAGAGGAGATTGT+CGG + chr5.3:72852419-72852438 MS.gene47673:CDS 50.0%
TTGTGGGAGAAACCCAAAGC+TGG - chr5.3:72853354-72853373 None:intergenic 50.0%
! ACCTGCCTTTTGTGTAGGAC+TGG + chr5.3:72852399-72852418 MS.gene47673:intron 50.0%
! AGTACCGGATAAGTGAAGCC+TGG - chr5.3:72855721-72855740 None:intergenic 50.0%
! ATATCTGGTGAGACTGGCTG+TGG + chr5.3:72853199-72853218 MS.gene47673:CDS 50.0%
! CCTGCCTTTTGTGTAGGACT+GGG + chr5.3:72852400-72852419 MS.gene47673:intron 50.0%
! CCTTTTGTGTAGGACTGGGA+AGG + chr5.3:72852404-72852423 MS.gene47673:intron 50.0%
! GCTCATTTTCCACCTGGTGA+TGG + chr5.3:72852543-72852562 MS.gene47673:CDS 50.0%
!!! GTTGGCCTTTTTGTTCGACG+TGG - chr5.3:72851289-72851308 None:intergenic 50.0%
CCCAGTCCTACACAAAAGGC+AGG - chr5.3:72852403-72852422 None:intergenic 55.0%
CGGCGTATCTCTGCAATGTC+AGG + chr5.3:72853544-72853563 MS.gene47673:CDS 55.0%
GACATTGCAGAGATACGCCG+AGG - chr5.3:72853544-72853563 None:intergenic 55.0%
TGTGTAGGACTGGGAAGGAG+AGG + chr5.3:72852409-72852428 MS.gene47673:intron 55.0%
AGAGAGAGAGGTGAGGCTGC+TGG + chr5.3:72853671-72853690 MS.gene47673:CDS 60.0%
GGTAGTGTCGTGTCCGGTGT+CGG + chr5.3:72851817-72851836 MS.gene47673:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 72851279 72855920 72851279 ID=MS.gene47673
chr5.3 mRNA 72851279 72855920 72851279 ID=MS.gene47673.t1;Parent=MS.gene47673
chr5.3 exon 72851279 72851414 72851279 ID=MS.gene47673.t1.exon1;Parent=MS.gene47673.t1
chr5.3 CDS 72851279 72851414 72851279 ID=cds.MS.gene47673.t1;Parent=MS.gene47673.t1
chr5.3 exon 72852218 72852308 72852218 ID=MS.gene47673.t1.exon2;Parent=MS.gene47673.t1
chr5.3 CDS 72852218 72852308 72852218 ID=cds.MS.gene47673.t1;Parent=MS.gene47673.t1
chr5.3 exon 72852416 72852725 72852416 ID=MS.gene47673.t1.exon3;Parent=MS.gene47673.t1
chr5.3 CDS 72852416 72852725 72852416 ID=cds.MS.gene47673.t1;Parent=MS.gene47673.t1
chr5.3 exon 72852890 72852964 72852890 ID=MS.gene47673.t1.exon4;Parent=MS.gene47673.t1
chr5.3 CDS 72852890 72852964 72852890 ID=cds.MS.gene47673.t1;Parent=MS.gene47673.t1
chr5.3 exon 72853187 72853234 72853187 ID=MS.gene47673.t1.exon5;Parent=MS.gene47673.t1
chr5.3 CDS 72853187 72853234 72853187 ID=cds.MS.gene47673.t1;Parent=MS.gene47673.t1
chr5.3 exon 72853475 72853565 72853475 ID=MS.gene47673.t1.exon6;Parent=MS.gene47673.t1
chr5.3 CDS 72853475 72853565 72853475 ID=cds.MS.gene47673.t1;Parent=MS.gene47673.t1
chr5.3 exon 72853654 72853712 72853654 ID=MS.gene47673.t1.exon7;Parent=MS.gene47673.t1
chr5.3 CDS 72853654 72853712 72853654 ID=cds.MS.gene47673.t1;Parent=MS.gene47673.t1
chr5.3 exon 72854484 72854633 72854484 ID=MS.gene47673.t1.exon8;Parent=MS.gene47673.t1
chr5.3 CDS 72854484 72854633 72854484 ID=cds.MS.gene47673.t1;Parent=MS.gene47673.t1
chr5.3 exon 72854929 72854981 72854929 ID=MS.gene47673.t1.exon9;Parent=MS.gene47673.t1
chr5.3 CDS 72854929 72854981 72854929 ID=cds.MS.gene47673.t1;Parent=MS.gene47673.t1
chr5.3 exon 72855469 72855502 72855469 ID=MS.gene47673.t1.exon10;Parent=MS.gene47673.t1
chr5.3 CDS 72855469 72855502 72855469 ID=cds.MS.gene47673.t1;Parent=MS.gene47673.t1
chr5.3 exon 72855646 72855735 72855646 ID=MS.gene47673.t1.exon11;Parent=MS.gene47673.t1
chr5.3 CDS 72855646 72855735 72855646 ID=cds.MS.gene47673.t1;Parent=MS.gene47673.t1
chr5.3 exon 72855828 72855920 72855828 ID=MS.gene47673.t1.exon12;Parent=MS.gene47673.t1
chr5.3 CDS 72855828 72855920 72855828 ID=cds.MS.gene47673.t1;Parent=MS.gene47673.t1
Gene Sequence

>MS.gene47673

ATGTCGACCACGTCGAACAAAAAGGCCAACAAGCTGGCAAGATTTAAGAAGTACGCTCAACCTACCAAAATCGATGAATCTACCAGGCGTCGAATAATTCGAACTTTGGAATTTTTTCAATCTTCTGATGAAGAAGGTACACTTACCCTTTTGCTTTTTTCGCCGTTTTATCAACAAAATATTATATGGGCTGTTTTCATTTTTTCGATGGAAATTAAAAAAATCGTCTTTTTGTTTTTGATTAATTGGGTGTTTTGTTTGAATTGGATATTTGCATTTTAGGTTTTTGTTTTTATTTTCAAGCTTGGTTTTATTTTTAGCTAGTTTATGACCCAATGAAATTATTTAGGTTTAAATGTGATTTTAGTACATGCATGATGATGCATATATACATTTTTTGCTTTCAGTTCATGTAGAATATTTTCTTGTTTTTATTAGCTCTGTAACACCAACATTTCTGATGGAAAGTGTGTTTGGTGTCTGACATTGACACATGTCATTACGTTCAATTTATATTACGTTCAATTTATTCATTTTAGGTAGTGTCGTGTCCGGTGTCGGTGTCTGTGTTTGTACCAATATTTCATACTTGTTAGTACTTGCAAATATACCATTTCTGCTATTAGTAATTGGTGTTTTGTTGTTTTGGTTATTGAAATTAGTCATTGTAATAATCATTTTAGTCTTTATTTTGCGTGACTAAAATCAAACATTCAACTTATTACATGTACCAATTTCAATATGAATCAATTTTGCAACTAAAAACAAAACAAGAAGGATCAAAAGGAAAGTTGTATATTTGCTAGTACTAAAATAAAGTTTTTTTACAGGGACAATTTGCATATTTAAGCCAAATGTTTATTGGAATTGTCAATTATGATTGTTGTTTGACTATATCCATTTATGAAATCTGGGTGTTTTTGTTGTTGTTAACTGCAGAGTACAAGTTTGAAGCTGGTTTGTCCAATGATGACCGTCGTTTTGCACATTTATTGGCCCAAAAAATGGGGTTTAAGTCTAAAAGTTATGGGTGAGTGAACAGCACAATTCTTCAATGGAATAATTGGTAAAGGAAGAATGTGTTTGGTTAAATTTTTACATACTGTGTTATTGATAATGAACCTGCCTTTTGTGTAGGACTGGGAAGGAGAGGAGATTGTCGGTTCGAAAAGCCAATAAGAAGGGTGGGAGTGATAATCAGTTTGCGAATCTTCCTCATTTCACATTCTCGGAAGAGTCAAAACGGGCAATGGGCGATTTATTTGCTCATTTTCCACCTGGTGATGGAAACTTGAAGGATCTGGTTGGAGAAAAGAGTGGCAGTATAGCTAACGCAAGACATAGGCATTCTGATATTTTTAGCAGACCCGTAATGACAAAAGATGAAATTACTCGGAAATTGGAAGCTGTAACTTCTAGAAGGGAGACTGTATCTGACTTGAAAGAGGTCATTTTCCCCCCCTCTCCATTCAACTTCAAAGACCTTGTGTATATGAATTTTTTTGGATTGATGCTGTATTGTTTTTCCCCTTTTCTGTAGTATGTTTATTTTAGCACTTGCAAAAGAATAGTTTCATTATTGAATCATTTAATTGATTTTTGTTCACGCAGATTACTGTGTTGAGATCTAAGCTACCGATTGCATCTTACAAGGATGCAATTACATCAGCAGTTGAATCTCACCAGGTTAATGTTTTCTTTTGCTTTGCAAATTTGCCTTTGAAATTTATCCACATGGTAGCTTGGTTACAGATAGTACTACAATCAAGTTTATCTAATATACATTGACATTTTAAATATGTTGGAACATAGTTTAGAAATCGTTTTGTTCTTAATCCAATTTCAACACTTGAAGATTGGATTTTTGCACGTGTTTTGATCTTAATATTCCTTGCATTTGTTTCAAAGCAGGTAGTTCTCATATCTGGTGAGACTGGCTGTGGAAAGACTACTCAGGTTAGCAATTTCTTTGCTTTTTCTTTATTATAATTTATCCACAACGTCATTTATTATAATTTGTTGCTAACGGTTTCAAAATGATCAATGATTTACTTATATATTGATGTTTTTATCCAGCTTTGGGTTTCTCCCACAAGTACTCCCATCATTGTATATGGACCTATATTTTTTGACAGTTTTTGTATGCCATGTGAAACATTCTGTTTGACTTATAATTAATATTAATTACTGATTCAGGTCCCACAATATATTTTGGATTATATGTGGGGTAAGGGGGAGACATGTAAGATACTTTGCACTCAGCCTCGGCGTATCTCTGCAATGTCAGGTGGGAAACTTTTCGAAACATTAATTTTCTTGATGTTCTTGTTTCAGTCTAAATTGAAATTTGTTTCTTGCACCCATTCTATGTCTAGTTTCTGAAAGAATCTCTAGAGAGAGAGGTGAGGCTGCTGGAGAAAATGTTGGATACAAGGTAAATTTATTTGCGTTTCTTTGTAGCAATGGTGCTGTGATCCTTTGTTCATTACTTTCTATTAAAAATATTTGTTGAATATTGAGCATTGTCAAACTGTTATCATTATAATTTGTTAATTTGATTGTCAATAAATCACAAGGATGCTTTTGCACTTCCAATTTTTTGCAATCACATGATAAGCATTCACAATGCACTTTTTTTATTGATATGTTGGAAGAGATCTTTAATTTGTCATTAGTTACTACTAAGTATGATTTTCCCCACTGCCAACGACTCAATTCACAATTTTTTTCCTTTTCTCTTCCTCATCTCATTTCTTTCTTTTATAGAATTATTACGACTTTTGCCCTTCAACATTCAATAACTTAACATTGAAGCAAGTTCCATTCCTAGCATTGGTCACTTCGCTTCTTAATAGAACATTACTAGCTTATCTAGTGTTTTACATGCCTTTCATATAATTCTCACGTGTCTTACATTTTATAGCAACTGTTAGAAGATATGAAAATATCTTCATGTTAAATCATCTCACAGGACAAGTTTCTTATTTTAGAGTATCTCTTGAAATTAGTTTCCATATGACTTAATTATTATTAAGGTCTTTCCCTATTTAATTAGGATCTGGAGTCATGTATTAGTAAAAATAAGGGATAGTGTTTACTTTATTTTTTGTATCATCAAATCAAACCATAATCATTATTCAAAGTCTTTATTCTTTCTCTTCCCTTTTATCTGATATATCCTATAACTTAAAAATAAACAATTCAGATACGCTTAGATAGCAAAGGTGGACAGCAATCATCTATTGTTCTATGTACTACTGGAGTTCTATTAAGGGTGTTGGTTTCTAAGGGTTCTCGTCGGTCAATGAAGAATCCCGCGAAGGATGAAATTTCTGACATCACTCACATCATTATGGTACTTCTTTCAAATTATTTTTAATCTTCTGCTAAAGCATAAAATATTATATTAATATTGTATAAATACTTCAAGTTCACGTTTCTTCATTACTAGCTTTTCTATTATTTTGACGTGAAATCTATTTTCAATTTTTCATATGAAAGACTTTGTTGTGACTAATGAGAACTGAGAACTGAATTGAAACGTTTTCGTACATTCTATGTTCAAGAATCTTGGCATATTTGAAGCATAATATTTGCATCCTTGCAAGATATGTATTGTAAAAATGAGGTGACATTCATTTCTTGTTCAGGATGAAATTCATGAAAGGGACCGATATTCAGACTTCATGTTGGCAATAATGAGGTATAAATTTGAAAGGAATATCTCAGCTTTTACTTTCTACTGTGGTATAATAGTTAAATACAAATATTTAAGTGCCCGTTGCATAAGCAAGCATAAAATTGGGCTGTAGGTTAAGCTTGTCCAAAGATAATTTGCATCTAATAGCATAATTTTTAGGGTAGAGTTGGTCGTTCGTGATCACAAGATTTAGTTTAACTCAATGGCATGGCAATAGCTTTCTTTATTTTTACTTTTTGGATAGGCAAATGTTAGTAAGTGATTATGTTAGTTTCTAGGATTTAAACCCTCAACCACTTGTTTAAAAGTTAAAACTCTTCAAGGTTTCTTAGCTTACCAACCAAGCTACCTACATGGATACAATAGCTTACCTGTTATATTTAATCCCCCCCTCCGAAAGATTTTTTTTTTCTGTTGTGAGATCATTCGTCTTAAGGAGTTTGTCTGGTTTTCTGACTAATATTTCTGATTTTTGATAACTTATCTGCAGAGACATGCTCCCTTTATATCCTCATCTACGTCTGGTCAGTTACAAGTATTACAACTATATTTTATATCTCTATTTCTCTTTCATTCTCCCAAGTTCTTTTTCAAATCATATACATATTATTTCCCATTTCAGCTTATATTTTAACCTTATCTGTTTTCTGGTGTGTTCTAATGTTAGGTATTAATGAGTGCTACCATTGATACTGCGAGATTTTCTCAATATTTTGGGGGATGCCCAGTTATCCAAGTTCCAGGCTTCACTTATCCGGTACTTATAGAGTAGATTGAGAATTGACTAATTCTTTTTCTTATCACATGTTTATGTTTACTATATTGTCTATTTGCTATTTCTTTCTTCAGGTCAAAACATACTATTTGGAGGATGTACTTTCTGCGGTAAAATCAAGCAATGATGATGGTTCCACATTTAGTATTCCAACAACAATCACATGA
Protein sequence

>MS.gene47673.t1

MSTTSNKKANKLARFKKYAQPTKIDESTRRRIIRTLEFFQSSDEEEYKFEAGLSNDDRRFAHLLAQKMGFKSKSYGTGKERRLSVRKANKKGGSDNQFANLPHFTFSEESKRAMGDLFAHFPPGDGNLKDLVGEKSGSIANARHRHSDIFSRPVMTKDEITRKLEAVTSRRETVSDLKEITVLRSKLPIASYKDAITSAVESHQQVVLISGETGCGKTTQVPQYILDYMWGKGETCKILCTQPRRISAMSVSERISRERGEAAGENVGYKIRLDSKGGQQSSIVLCTTGVLLRVLVSKGSRRSMKNPAKDEISDITHIIMDEIHERDRYSDFMLAIMRDMLPLYPHLRLVLMSATIDTARFSQYFGGCPVIQVPGFTYPVKTYYLEDVLSAVKSSNDDGSTFSIPTTIT