AlfalfaGEDB | MS.gene47778

M. sativa cultivar XinJiangDaYe / MS.gene47778

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF11883.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47778.t1	RHN45875.1	94.8	174	8	1	1	174	617	789	7.30E-88	333.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47778.t1	Q9SXB4	58.6	174	64	2	1	174	655	820	2.0e-49	196.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47778.t1	A0A072TZ10	94.8	174	8	1	1	174	987	1159	5.3e-88	333.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050750	MS.gene47778	0.801942	7.09E-49	-1.69E-46
MS.gene050953	MS.gene47778	0.816201	6.25E-52	-1.69E-46
MS.gene054405	MS.gene47778	0.824793	6.66E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene007847	MS.gene47778	PPI
MS.gene026916	MS.gene47778	PPI
MS.gene026921	MS.gene47778	PPI
MS.gene026923	MS.gene47778	PPI
MS.gene039343	MS.gene47778	PPI
MS.gene039344	MS.gene47778	PPI
MS.gene039345	MS.gene47778	PPI
MS.gene070743	MS.gene47778	PPI
MS.gene070745	MS.gene47778	PPI
MS.gene070746	MS.gene47778	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47778.t1	MTR_7g056430	94.828	174	8	1	1	174	987	1159	4.79e-111	341
MS.gene47778.t1	MTR_7g056663	75.287	174	42	1	1	174	672	844	2.27e-86	270
MS.gene47778.t1	MTR_7g056450	72.414	174	47	1	1	174	655	827	3.95e-85	267
MS.gene47778.t1	MTR_7g056590	71.839	174	48	1	1	174	509	681	7.72e-85	263
MS.gene47778.t1	MTR_7g056510	72.414	174	42	2	1	174	655	822	2.03e-82	259
MS.gene47778.t1	MTR_7g056640	72.989	174	46	1	1	174	663	835	2.43e-82	259
MS.gene47778.t1	MTR_7g056680	70.690	174	50	1	1	174	487	659	3.73e-81	253
MS.gene47778.t1	MTR_7g056667	72.414	174	39	1	1	174	668	832	2.93e-80	254
MS.gene47778.t1	MTR_7g056680	70.690	174	50	1	1	174	647	819	3.29e-80	253
MS.gene47778.t1	MTR_7g056680	70.690	174	50	1	1	174	652	824	3.48e-80	253

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47778.t1	AT1G11300	59.770	174	62	3	1	174	640	805	1.32e-60	201
MS.gene47778.t1	AT1G11300	59.770	174	62	3	1	174	655	820	1.57e-60	201
MS.gene47778.t1	AT1G65790	54.749	179	76	2	1	174	665	843	1.14e-57	193
MS.gene47778.t1	AT1G11330	51.724	174	83	1	1	174	670	842	5.20e-56	189
MS.gene47778.t1	AT1G11330	51.724	174	83	1	1	174	668	840	5.35e-56	189
MS.gene47778.t1	AT1G65800	53.631	179	78	2	1	174	669	847	6.91e-55	186
MS.gene47778.t1	AT1G11350	52.874	174	81	1	1	174	658	830	6.92e-54	182
MS.gene47778.t1	AT1G11303	53.448	174	73	2	1	174	655	820	1.98e-53	181
MS.gene47778.t1	AT4G21380	52.514	179	80	2	1	174	672	850	3.96e-53	181
MS.gene47778.t1	AT4G23150	47.753	178	89	1	1	174	482	659	7.87e-51	172

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Find 33 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATATTTATGATGGAT+AGG	0.513363	7.4:+47145025	None:intergenic
AAATCTGATGTCTTTAGCTT+TGG	0.345102	7.4:-47145274	MS.gene47778:CDS
AATGCAGGTTTCTTTGGAGG+AGG	0.552536	7.4:+47144899	None:intergenic
ACATAGAAGCCCTATATGTA+TGG	0.464882	7.4:+47144997	None:intergenic
ACCTCAAAATATATTTATGA+TGG	0.484529	7.4:+47145020	None:intergenic
AGAGACTTACAAATCCTAAA+AGG	0.259740	7.4:+47145182	None:intergenic
AGCCATGGCAGGTCTGTCTA+TGG	0.438416	7.4:+47144961	None:intergenic
AGCTCAGCATATTCTGCTTC+AGG	0.350787	7.4:+47144873	None:intergenic
AGGATGAATGCAGGTTTCTT+TGG	0.278631	7.4:+47144893	None:intergenic
AGTCCTTGCATTGCATATTC+TGG	0.346583	7.4:+47145307	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGACTTACAAATCCTAAA+AGG	+	chr7.4:47145091-47145110	None:intergenic	30.0%
CAATTTAGGTATGGATACAA+TGG	-	chr7.4:47145177-47145196	MS.gene47778:intron	30.0%
GAAAATACTAGAAGAGTTGT+CGG	-	chr7.4:47144829-47144848	MS.gene47778:CDS	30.0%
GAGACTTACAAATCCTAAAA+GGG	+	chr7.4:47145090-47145109	None:intergenic	30.0%
TAAAACTATGGTAGCATACT+TGG	-	chr7.4:47144889-47144908	MS.gene47778:CDS	30.0%
ACATAGAAGCCCTATATGTA+TGG	+	chr7.4:47145276-47145295	None:intergenic	35.0%
TATATTCCTGGATCTATCAG+TGG	+	chr7.4:47145221-47145240	None:intergenic	35.0%
TGGATAGGATCATATATTCC+TGG	+	chr7.4:47145233-47145252	None:intergenic	35.0%
AGGATGAATGCAGGTTTCTT+TGG	+	chr7.4:47145380-47145399	None:intergenic	40.0%
AGTCCTTGCATTGCATATTC+TGG	+	chr7.4:47144966-47144985	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	47144796	47145496	47144796	ID=MS.gene47778
chr7.4	mRNA	47144796	47145496	47144796	ID=MS.gene47778.t1;Parent=MS.gene47778
chr7.4	exon	47145435	47145496	47145435	ID=MS.gene47778.t1.exon1;Parent=MS.gene47778.t1
chr7.4	CDS	47145435	47145496	47145435	ID=cds.MS.gene47778.t1;Parent=MS.gene47778.t1
chr7.4	exon	47145192	47145342	47145192	ID=MS.gene47778.t1.exon2;Parent=MS.gene47778.t1
chr7.4	CDS	47145192	47145342	47145192	ID=cds.MS.gene47778.t1;Parent=MS.gene47778.t1
chr7.4	exon	47144796	47145107	47144796	ID=MS.gene47778.t1.exon3;Parent=MS.gene47778.t1
chr7.4	CDS	47144796	47145107	47144796	ID=cds.MS.gene47778.t1;Parent=MS.gene47778.t1

Gene Sequence

>MS.gene47778

ATGGCCAGAATCTTTGGAGGGAATGAAGATCAAGAAAATACTAGAAGAGTTGTCGGAACTTAGTAAGTACAACAATACACCTTTTCCTTTGTTTAAAACTATGGTAGCATACTTGGATATTCAATTTCAATTGTCTAATTGCACTTCAATGCAGTGGTTATATGTCTCCAGAATATGCAATGCAAGGACTGTTTTCTGATAAATCTGATGTCTTTAGCTTTGGAGTTTTACTTCTTGAGATTATTAGTGGAAGACGAAATTCAAGTTTTTATGACTGCGAGAACTCTCTTACCCTTTTAGGATTTGTAAGTCTCTTCAATTCTTATCTAACTCAATTTTGGATGTTCTACAACTTTCTCTAATGTTTGACATTTGTTTTGTCAATTTAGGTATGGATACAATGGCAAGAAGGCAATATTCTACCACTGATAGATCCAGGAATATATGATCCTATCCATCATAAATATATTTTGAGGTCCATACATATAGGGCTTCTATGTGTACAGCAATTTTCCATAGACAGACCTGCCATGGCTGCTGTAATTTCTATGCTGAACAGTGACATTGTAGATCTTCCTCCTCCAAAGAAACCTGCATTCATCCTGAAGCAGAATATGCTGAGCTCGGTGTCGCCTGAAGAAAACAACGATGACTTGTACTCCGTCAACTTGGTCAGTATATCAGACATCCATGGCAGATAG

Protein sequence

>MS.gene47778.t1

MARIFGGNEDQENTRRVVGTYGYMSPEYAMQGLFSDKSDVFSFGVLLLEIISGRRNSSFYDCENSLTLLGFVWIQWQEGNILPLIDPGIYDPIHHKYILRSIHIGLLCVQQFSIDRPAMAAVISMLNSDIVDLPPPKKPAFILKQNMLSSVSPEENNDDLYSVNLVSISDIHGR