AlfalfaGEDB | MS.gene48105

M. sativa cultivar XinJiangDaYe / MS.gene48105

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48105.t1	KEH37523.1	78.1	1005	96	2	1	883	25	1027	1.90E-232	815.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48105.t1	Q9SD62	43.7	423	213	8	473	881	612	1023	8.1e-91	336.7
MS.gene48105.t1	Q9SD62	44.4	72	40	0	17	88	38	109	1.8e-10	69.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48105.t1	A0A072V841	78.1	1005	96	2	1	883	25	1027	1.4e-232	815.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052333	MS.gene48105	0.805907	1.06E-49	-1.69E-46
MS.gene061040	MS.gene48105	-0.801358	9.35E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene010450	MS.gene48105	PPI
MS.gene03306	MS.gene48105	PPI
MS.gene048022	MS.gene48105	PPI
MS.gene057324	MS.gene48105	PPI
MS.gene41017	MS.gene48105	PPI
MS.gene48095	MS.gene48105	PPI
MS.gene48105	MS.gene019754	PPI
MS.gene48105	MS.gene72757	PPI
MS.gene48105	MS.gene70547	PPI
MS.gene48105	MS.gene028140	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene48105.t1	MTR_6g036780	77.950	966	130	7	1	883	25	990	1438
MS.gene48105.t1	MTR_6g036790	75.281	979	145	11	1	883	25	1002	1382
MS.gene48105.t1	MTR_2g040910	73.108	1004	148	11	1	883	25	1027	1352
MS.gene48105.t1	MTR_6g036840	71.514	1004	164	11	1	883	25	1027	1344
MS.gene48105.t1	MTR_6g036890	70.101	990	175	11	11	880	1	989	1307
MS.gene48105.t1	MTR_6g036870	72.834	935	137	11	1	846	19	925	1249
MS.gene48105.t1	MTR_5g026160	62.763	999	244	9	1	879	1	991	1141
MS.gene48105.t1	MTR_5g026150	62.462	991	250	10	10	879	3	992	1123
MS.gene48105.t1	MTR_5g025860	62.638	993	252	9	10	883	3	995	1122
MS.gene48105.t1	MTR_5g025950	60.800	1000	270	10	1	880	27	1024	1105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48105.t1	AT3G47570	42.118	850	446	13	62	877	164	1001	0.0	614
MS.gene48105.t1	AT3G47570	35.498	462	282	5	16	470	22	474	4.81e-73	259
MS.gene48105.t1	AT3G47570	32.231	363	220	9	143	493	77	425	3.62e-31	132
MS.gene48105.t1	AT3G47570	33.086	269	173	4	217	484	49	311	4.24e-28	122
MS.gene48105.t1	AT3G47570	28.571	273	162	2	53	325	354	593	1.15e-18	92.0
MS.gene48105.t1	AT3G47090	41.330	842	447	14	71	878	173	1001	0.0	593
MS.gene48105.t1	AT3G47090	33.462	520	292	9	16	499	22	523	1.17e-65	238
MS.gene48105.t1	AT3G47090	34.074	135	89	0	64	198	414	548	1.46e-12	72.4
MS.gene48105.t1	AT3G47580	40.867	854	448	16	65	878	167	1003	0.0	582
MS.gene48105.t1	AT3G47580	31.923	520	308	6	3	487	9	517	1.61e-63	232

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Find 162 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAGAATGAATATTG+TGG	0.571911	6.4:+9712307	MS.gene48105:CDS
AAAAGTGAGATTGCAAACAT+GGG	0.604780	6.4:-9709571	None:intergenic
AAAATATTTAAAACCTCTAC+AGG	0.455874	6.4:-9710685	None:intergenic
AAAATCTTTACAAGATTATC+GGG	0.438145	6.4:-9712152	None:intergenic
AAAATGGAAGCTTAGAACAG+TGG	0.677024	6.4:+9711601	MS.gene48105:CDS
AAAGATGCAGCTATTACATT+TGG	0.330641	6.4:+9710492	MS.gene48105:CDS
AAAGATTTCCTATGAATGAA+GGG	0.510386	6.4:-9709854	None:intergenic
AAAGCTATACATGTCACCAC+AGG	0.665297	6.4:-9712033	None:intergenic
AAAGTGAGATTGCAAACATG+GGG	0.668883	6.4:-9709570	None:intergenic
AAATATTAGACACCGAAATT+TGG	0.215634	6.4:+9711503	MS.gene48105:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTGAGATTGCAAACAT+GGG	-	chr6.4:9709574-9709593	None:intergenic	30.0%
AAAGATGCAGCTATTACATT+TGG	+	chr6.4:9710492-9710511	MS.gene48105:CDS	30.0%
AACAATTGATCAACTAGCTA+AGG	+	chr6.4:9711293-9711312	MS.gene48105:CDS	30.0%
AACTTGAACAATTAGCTATG+GGG	+	chr6.4:9710350-9710369	MS.gene48105:intron	30.0%
AAGATGCAAGAACTTTGTAT+GGG	-	chr6.4:9709440-9709459	None:intergenic	30.0%
AAGCATTTGCAATCGAAATA+GGG	-	chr6.4:9710090-9710109	None:intergenic	30.0%
ACAAGAAGGAATATTTCTTG+TGG	-	chr6.4:9709930-9709949	None:intergenic	30.0%
ACCATCTTCAAAAAGTTCAT+CGG	-	chr6.4:9712099-9712118	None:intergenic	30.0%
ATTGGAAACAAAAAGCTTTG+TGG	+	chr6.4:9711090-9711109	MS.gene48105:CDS	30.0%
CAAAAGAATACTAGCACTAT+CGG	+	chr6.4:9711855-9711874	MS.gene48105:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	9709339	9712388	9709339	ID=MS.gene48105
chr6.4	mRNA	9709339	9712388	9709339	ID=MS.gene48105.t1;Parent=MS.gene48105
chr6.4	exon	9709339	9710079	9709339	ID=MS.gene48105.t1.exon1;Parent=MS.gene48105.t1
chr6.4	CDS	9709339	9710079	9709339	ID=cds.MS.gene48105.t1;Parent=MS.gene48105.t1
chr6.4	exon	9710382	9711909	9710382	ID=MS.gene48105.t1.exon2;Parent=MS.gene48105.t1
chr6.4	CDS	9710382	9711909	9710382	ID=cds.MS.gene48105.t1;Parent=MS.gene48105.t1
chr6.4	exon	9712006	9712388	9712006	ID=MS.gene48105.t1.exon3;Parent=MS.gene48105.t1
chr6.4	CDS	9712006	9712388	9712006	ID=cds.MS.gene48105.t1;Parent=MS.gene48105.t1

Gene Sequence

>MS.gene48105

ATGTGGTTTGGTCCAAACAAAATAAGGGCAGTGTCTGCAATAGGAAACCAAACTGATCATTTGGCATTGCTCAAATTCAAAGAATCAATATCTAGTGACCCATACAAAGTTCTTGCATCTTGGAATTCTTCCATCCATTTCTGCAAGTGGCAGGGAATCATATGCAGCCCCATGCATGAACGAGTTACAGAGTTGAGCCTAGAAAGCTATCAGTTACATGGATCTTTATCTCCCCATGTTTGCAATCTCACTTTTCTGAAAACTCTCGACATTGAAAACAACAACTTCTTTGGAGAAATTCCACAGGAGTTGGGTCAGTTGCTACATTTGCAGCAACTTTTTCTCAGCAGTAATTCTTTTGTAGGTGAGATTCCTACAAACCTGACATATTGCTCCAATCTCAAATTATTGCTTTTGAATGGGAACCATCTTAGTGGTATAATACCAACTGGAATCGGCTCTTTGAAAAAGCTTCAAGCAATGGCTGTTCGGAGTAACAATTTAACCGGAGGAATCCCTTCATTCATAGGAAATCTTTCAAGCTTAACACTTCTATCAGTTCCTCGTAACAATTTTGAGGGAGATATTCCACAAGAAATATTCCTTCTTGTCTTTATAATATCTCATCACTTAATGTCCTTTCGGTTTCACAAAATACCTTTCATGGCTCTTTTCCACCCAACATGTTCCACACCCTCCCCAATCTTCAAAAAATCTATTTTGGAGGAAATCAATTCTCAGGTCCAATCCCTATTTCGATTGCAAATGCTTCTGGCCTACAAATATTAGACTTAGGACACAACATGAATTTGGTTGGACAAGTTCCAAGTCTAGGGAATTTACAGGATCTTTCCTTTCTAAGTTTGGAATTAAACAATTTAGGTAACAATTCAACTATGGATTTAGAGTTTTTAAAATATTTGACAAATTGCAGTAAACTACACACGCTTTCGATAGCTTATAATAATTTTGGAGGTCAATTGCCAAATTTCATATGCAATTTATCAACCGAACTTGAACAATTAGCTATGGGGGTTAATCAGATATCAGGAAAAATTCCTGCAGAATTAGGATGTCTAGTTGGCTTAATTCTCTTGGCCATGGAGTCTAACTGCTTTGAAGGAGCTATTCCAACTACTTTTGGGAAGTTAAAAAAGATGCAGCTATTACATTTGGAGAAAAACAAGTTGTCAGGAGATATTCCACCCTTCATAGGCAATCTCAGTCAATTGTATGATTTAGCATTAGATCATAATATGTTTCAAGGAATTATTCCTCCAAGCATAGGAAACTGTAAAAATTTACAATATTTAGATCTTTCTCATAATAAGCTTCGAGGAACCATACCTGTAGAGGTTTTAAATATTTTTTCTTTATCAATCTTATTGAACTTGTCACATAACTCTTTGAGCGGTACCTTACCAAGAGAAGTGGGTATGTTAAAAAATATTGAAGAATTAGATGTCTCTGAGAATCATCTATCTGGTGATATTCCGAGAGAAATTGGTGAATGTACAAGCTTGGAATATATTCATTTGCAAAGGAACATCTTCAATGGAACAATACCGTCCTCTTTGGCTTCTCTCAAAGGTCTTCGATATTTAGACCTTTCAAGAAATCAATTGTCTGGATCAATTCCTGATGGTATGCAAAATTTCTCCATTTTAGAATATTTGAATGTTTCTTTTAACATGTTGGAAGGAGAGGTACCGACAAATGGTGTATTTGGAAATGCAACCCAAATAAAAGTGATTGGAAACAAAAAGCTTTGTGGAGGTATTTCCCACCTGCACCTACCACCATGCCCAATCAAGGGTACGAAACATGGTAAACAACACATGTTCAGGTTGCTAGCAGTGATAGTTAGTGTGGTTTCTTTTATTCTCATACTTTCATTTATCATAACTATCTTCATGATGAGGAAAAGAAATCAAAAGAGATCTTCTGATTCACCAACAATTGATCAACTAGCTAAGGTTTCATACCAAGAATTACACGTAGGAACCGATGGATTCTCGGATAGAAACATGATCGGATCAGGAAGTTTTGGTTTTGTATACAGAGGAAATATTGTTTCAGAAGATAGTGTTGTTGCAGTAAAAGCCTTGAACCTCCTGAAAAAGGGAGCTCACAAGAGTTTCATTGTTGAATGTAATGCACTCAAAAATATTAGACACCGAAATTTGGTTAAGGTTTTAACATGTTGTTCTAGCACAAATTACAAAGGTCAAGAATTTAAAGCTCTAGTTTTTGAATACATGAAAAATGGAAGCTTAGAACAGTGGTTACATCCTGAGACTTTGAATGCAAATCCTCCAACAACATTGAACCTTGGTCATAGATTAAGCATCATCATCGATGTTGCTTCTGCATTACATTATCTTCATCGAGAATGTGAGCAATTAGTCCTTCATTGTGATCTAAAGCCAAGCAATGTCCTTCTTGATGGTGACATGGTTGCTCACGTGAGTGATTTCGGCATAGCAAGACTTGTCTCAACCATTTGTGGTACCTCTCAAAAGAATACTAGCACTATCGGAATAAAAGGAACAGTTGGTTATGCTCCCCCGGGTATGTTTTAAATTCTTGAATCTTCCATTTTTTTTTTTTTGAATCTTCATATGTTTTAGCATAAATATATATAATACCTTTTGTTACATATTTTAGAGTATGGGATGGGTTCAGAAGTTTCCACCTGTGGTGACATGTATAGCTTTGGAATCCTTATGCTGGAAATTCTTACTGGTAGAAGACCCACCGATGAACTTTTTGAAGATGGTCAAAATCTGCATAACTTTGTTACAATTTCATTTCCCGATAATCTTGTAAAGATTTTGGATCCATATCTTTTACCAAGAGCTGAAGAAGGAGCAATAGAAGATGGAAATCATGAGATTCTTATTCCAACTGTAGAGGAGTGCTTAGTTTCACTTTTTAGGATTGGACTTTTTTGTTCATTGGAATCACCAAAAGAAAGAATGAATATTGTGGATGTCACTAGAGAGCTTAGCACAATCCAGAAGGTCTTTCTAGCTGGTGAGATGAACTGA

Protein sequence

>MS.gene48105.t1

MWFGPNKIRAVSAIGNQTDHLALLKFKESISSDPYKVLASWNSSIHFCKWQGIICSPMHERVTELSLESYQLHGSLSPHVCNLTFLKTLDIENNNFFGEIPQELGQLLHLQQLFLSSNSFVGEIPTNLTYCSNLKLLLLNGNHLSGIIPTGIGSLKKLQAMAVRSNNLTGGIPSFIGNLSSLTLLSVPRNNFEGDIPQEIFLLVFIISHHLMSFRFHKIPFMALFHPTCSTPSPIFKKSILEEINSQISGKIPAELGCLVGLILLAMESNCFEGAIPTTFGKLKKMQLLHLEKNKLSGDIPPFIGNLSQLYDLALDHNMFQGIIPPSIGNCKNLQYLDLSHNKLRGTIPVEVLNIFSLSILLNLSHNSLSGTLPREVGMLKNIEELDVSENHLSGDIPREIGECTSLEYIHLQRNIFNGTIPSSLASLKGLRYLDLSRNQLSGSIPDGMQNFSILEYLNVSFNMLEGEVPTNGVFGNATQIKVIGNKKLCGGISHLHLPPCPIKGTKHGKQHMFRLLAVIVSVVSFILILSFIITIFMMRKRNQKRSSDSPTIDQLAKVSYQELHVGTDGFSDRNMIGSGSFGFVYRGNIVSEDSVVAVKALNLLKKGAHKSFIVECNALKNIRHRNLVKVLTCCSSTNYKGQEFKALVFEYMKNGSLEQWLHPETLNANPPTTLNLGHRLSIIIDVASALHYLHRECEQLVLHCDLKPSNVLLDGDMVAHVSDFGIARLVSTICGTSQKNTSTIGIKGTVGYAPPEYGMGSEVSTCGDMYSFGILMLEILTGRRPTDELFEDGQNLHNFVTISFPDNLVKILDPYLLPRAEEGAIEDGNHEILIPTVEECLVSLFRIGLFCSLESPKERMNIVDVTRELSTIQKVFLAGEMN