AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene48381


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48381.t1 MTR_4g106900 95.982 672 27 0 1 672 1 672 0.0 1314
MS.gene48381.t1 MTR_3g077950 61.609 758 197 9 1 668 1 754 0.0 874
MS.gene48381.t1 MTR_3g077950 61.162 757 202 9 1 668 29 782 0.0 863
MS.gene48381.t1 MTR_6g007110 56.628 694 271 8 1 670 1 688 0.0 733
MS.gene48381.t1 MTR_8g099745 62.772 505 187 1 167 670 65 569 0.0 669
MS.gene48381.t1 MTR_6g007110 55.433 635 254 7 1 612 1 629 0.0 658
MS.gene48381.t1 MTR_8g027385 61.310 504 193 1 167 670 52 553 0.0 645
MS.gene48381.t1 MTR_1g070145 26.069 491 351 5 167 652 91 574 1.25e-42 163
MS.gene48381.t1 MTR_2g023050 68.132 91 28 1 581 670 3 93 2.12e-33 125
MS.gene48381.t1 MTR_6g006830 57.143 49 21 0 404 452 19 67 1.52e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48381.t1 AT1G27500 57.210 638 245 6 42 668 20 640 0.0 718
MS.gene48381.t1 AT1G27500 57.210 638 245 6 42 668 31 651 0.0 718
MS.gene48381.t1 AT3G27960 54.893 654 262 10 30 670 19 652 0.0 689
MS.gene48381.t1 AT3G27960 54.893 654 262 10 30 670 19 652 0.0 689
MS.gene48381.t1 AT4G10840 55.726 585 234 5 104 670 12 589 0.0 651
MS.gene48381.t1 AT3G27960 54.530 596 238 10 30 612 19 594 0.0 624
MS.gene48381.t1 AT4G10840 55.408 527 210 5 104 612 12 531 0.0 586
MS.gene48381.t1 AT2G31240 26.877 506 357 6 161 659 103 602 3.46e-42 162

Find 134 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATATACCCCAAGAGTTTC+AGG 0.177813 8.3:-17128082 None:intergenic
TCAATTATGTGTTACAATAA+TGG 0.193081 8.3:+17127146 MS.gene48381:CDS
CCCTTAGCTCTTGATATTGA+TGG 0.198930 8.3:-17126627 None:intergenic
TCATTTGTTCTCCACTAATA+TGG 0.215795 8.3:-17126539 None:intergenic
TCGATCGATCGCTCTAAAAT+TGG 0.218648 8.3:-17127023 None:intergenic
CAGACGCCACTTCCACTTCT+TGG 0.232398 8.3:-17127445 None:intergenic
CTTGATATTCATAGAGAAAA+TGG 0.235706 8.3:+17127296 MS.gene48381:CDS
GGACGATGCAATTGATATTA+TGG 0.270150 8.3:+17128495 MS.gene48381:CDS
CAATTATGTGTTACAATAAT+GGG 0.276825 8.3:+17127147 MS.gene48381:CDS
CTTCCAATAGAAGCATTCTT+AGG 0.278099 8.3:-17126744 None:intergenic
TGAAGAAGCAAAGATTGTTT+TGG 0.282341 8.3:+17128036 MS.gene48381:CDS
GGAAGTACAAAGAAAGGTTT+TGG 0.283596 8.3:+17127172 MS.gene48381:CDS
ATTTCGCAATTGCCTGTTGC+TGG 0.305472 8.3:-17127067 None:intergenic
TGTGGGCTCAATGGTATTCT+TGG 0.312525 8.3:-17126393 None:intergenic
TGCAGCAATATATTGCAGTT+TGG 0.316706 8.3:+17126980 MS.gene48381:CDS
AAGTCGAGTCGACGATTCTA+AGG 0.334895 8.3:+17126779 MS.gene48381:CDS
TGCAAATGGGAAACCGAGTT+TGG 0.341154 8.3:+17126932 MS.gene48381:CDS
TTTATTATATATGTTCTTAG+AGG 0.341743 8.3:-17126361 None:intergenic
GCAAGGGATTTGATTTCATT+AGG 0.353869 8.3:+17126849 MS.gene48381:CDS
AAACCTAAGAATGCTTCTAT+TGG 0.361701 8.3:+17126741 MS.gene48381:CDS
GCAGCAATATATTGCAGTTT+GGG 0.364615 8.3:+17126981 MS.gene48381:CDS
TCAGAATTTAGCCATATTAG+TGG 0.370582 8.3:+17126528 MS.gene48381:CDS
GCAATTGTGTTCTGTTGGCC+AGG 0.374516 8.3:-17127818 None:intergenic
GAAGTATTGTTGAAGGAAAC+AGG 0.377018 8.3:+17128592 MS.gene48381:CDS
TTTCCATTCTTCCTTTCAAC+AGG 0.377860 8.3:-17126672 None:intergenic
TGCAGGAATTGAAGCTCAAA+TGG 0.381007 8.3:+17127838 MS.gene48381:CDS
TGGATCGGTCTTTGTACGTT+TGG 0.386436 8.3:+17127586 MS.gene48381:CDS
CTTATCACCCTGAAACTCTT+GGG 0.395524 8.3:+17128074 MS.gene48381:CDS
CGTCGTATCGAGCCAATGAT+AGG 0.402619 8.3:-17127493 None:intergenic
GGAGATAGTGAAAGAGGAAA+TGG 0.406354 8.3:+17126569 MS.gene48381:CDS
CAAGAGTTGGTGAAACTTGT+AGG 0.412109 8.3:+17127207 MS.gene48381:CDS
CCTTATCACCCTGAAACTCT+TGG 0.414921 8.3:+17128073 MS.gene48381:CDS
ATCTCTTCTGAAGGAACGCC+AGG 0.416447 8.3:-17127692 None:intergenic
TGGAGACACATTCCTATCAT+TGG 0.416505 8.3:+17127481 MS.gene48381:CDS
CCAGGTATTGTTCCAATTGA+AGG 0.416547 8.3:+17126306 MS.gene48381:CDS
CCTTCAATTGGAACAATACC+TGG 0.419676 8.3:-17126306 None:intergenic
TTGTTTGAGAATTCTGCAAA+TGG 0.422693 8.3:+17126918 MS.gene48381:CDS
GGCCAACAGAACACAATTGC+AGG 0.427612 8.3:+17127821 MS.gene48381:CDS
GGTCTTATATGTGAAACTAA+TGG 0.429270 8.3:+17127362 MS.gene48381:CDS
TGCTGGCCTTCCTCAACAAC+AGG 0.431904 8.3:-17127050 None:intergenic
TTGAAGAGGCAGCGGATAGA+AGG 0.431980 8.3:+17127333 MS.gene48381:CDS
CTACAAGTTTCACCAACTCT+TGG 0.433233 8.3:-17127206 None:intergenic
ATAATAGAACATGGAAGGTA+AGG 0.438944 8.3:+17127618 MS.gene48381:CDS
CCTCCTGTTGAAAGGAAGAA+TGG 0.443940 8.3:+17126669 MS.gene48381:CDS
GCTTTGGATCTGATAGTGAT+TGG 0.453900 8.3:+17126493 MS.gene48381:CDS
TGGGAAACCGAGTTTGGATC+TGG 0.455266 8.3:+17126938 MS.gene48381:CDS
GCAGGAATTGAAGCTCAAAT+GGG 0.456824 8.3:+17127839 MS.gene48381:CDS
GGGGTATATAGCAATCTTGC+TGG 0.456842 8.3:+17128094 MS.gene48381:CDS
GTCTCAAAGCTTCGAGCTAC+GGG 0.458234 8.3:+17127920 MS.gene48381:CDS
TTAGGTGTTTGTGGGCTCAA+TGG 0.458935 8.3:-17126402 None:intergenic
TTCTGAAGGAACGCCAGGCA+TGG 0.459865 8.3:-17127687 None:intergenic
TGAAGGAAACAGGCAGAGTT+CGG 0.462163 8.3:+17128602 MS.gene48381:CDS
ACACGCTCAAGTCAAAGCTT+TGG 0.469749 8.3:+17126477 MS.gene48381:CDS
CCAAGAGTTTCAGGGTGATA+AGG 0.470788 8.3:-17128073 None:intergenic
GAAGATGGAGATAGTGAAAG+AGG 0.472563 8.3:+17126563 MS.gene48381:CDS
TGGAGAACAAATGAGGAAGA+TGG 0.477057 8.3:+17126548 MS.gene48381:CDS
CCATTCTTCCTTTCAACAGG+AGG 0.477650 8.3:-17126669 None:intergenic
AAGCATTGTAAGATTCAGTC+TGG 0.479901 8.3:-17127886 None:intergenic
TGGGTTGGAAGTACAAAGAA+AGG 0.481648 8.3:+17127166 MS.gene48381:CDS
GGCAGCGGATAGAAGGTTGA+TGG 0.481673 8.3:+17127340 MS.gene48381:CDS
ACATTTGATAATCCTGAGCT+TGG 0.484852 8.3:+17126807 MS.gene48381:CDS
TGTTGAGGAAGGCCAGCAAC+AGG 0.489903 8.3:+17127055 MS.gene48381:CDS
ATCTATGAAAATCCCATGCC+TGG 0.491291 8.3:+17127674 MS.gene48381:CDS
TGTTGATGAGAAGAGAAGGT+TGG 0.493492 8.3:+17128570 MS.gene48381:CDS
GATTCTTCTTGATGTTAATG+AGG 0.494164 8.3:+17128648 MS.gene48381:CDS
AAGGTTGGAAGTATTGTTGA+AGG 0.494395 8.3:+17128585 MS.gene48381:CDS
TTCGCCAGTCACATGCAACT+TGG 0.495995 8.3:+17127089 MS.gene48381:CDS
ACCATCAATATCAAGAGCTA+AGG 0.498141 8.3:+17126626 MS.gene48381:CDS
GGGGTCATATACTATGTGTT+GGG 0.499466 8.3:+17127860 MS.gene48381:CDS
CAATTGTGTTCTGTTGGCCA+GGG 0.500673 8.3:-17127817 None:intergenic
TGTTTGAGAATTCTGCAAAT+GGG 0.502518 8.3:+17126919 MS.gene48381:CDS
GTCTCCAAGTTGCATGTGAC+TGG 0.503224 8.3:-17127093 None:intergenic
TCTGAAGGAACGCCAGGCAT+GGG 0.507549 8.3:-17127686 None:intergenic
TTCCTGCAATTGTGTTCTGT+TGG 0.509608 8.3:-17127823 None:intergenic
CAGTTTGGGTCATTATAATG+AGG 0.510429 8.3:+17126995 MS.gene48381:CDS
TGGAAATCATGAAGCAGCAT+TGG 0.513854 8.3:+17127382 MS.gene48381:CDS
GGAGTACATTGTAGTTGTGA+GGG 0.517613 8.3:+17128516 MS.gene48381:CDS
AGCATGGCAATGGTATCAAA+TGG 0.519611 8.3:+17127422 MS.gene48381:CDS
CGCTGCCTCTTCAAGAGAAG+AGG 0.524252 8.3:-17127324 None:intergenic
GCTGGCACATATGATGCAAT+TGG 0.526112 8.3:+17128112 MS.gene48381:CDS
TATATACCCCAAGAGTTTCA+GGG 0.526906 8.3:-17128081 None:intergenic
CTCTTCTCTTGAAGAGGCAG+CGG 0.529044 8.3:+17127325 MS.gene48381:CDS
TCGATACGACGAGGCCATCT+TGG 0.530389 8.3:+17127505 MS.gene48381:CDS
TGTCTCAAAGCTTCGAGCTA+CGG 0.531527 8.3:+17127919 MS.gene48381:CDS
GATCGAAATTCCTGTTGTTG+AGG 0.532523 8.3:+17127040 MS.gene48381:CDS
GCGTCTGTTGATTGCAGCAT+TGG 0.533117 8.3:+17127461 MS.gene48381:CDS
CAAAGGAGGGAATCATCCTT+CGG 0.536771 8.3:+17127562 MS.gene48381:CDS
CTTCAAAACCTCCTGTTGAA+AGG 0.539003 8.3:+17126661 MS.gene48381:CDS
ATATGTTCTTAGAGGGTGAA+GGG 0.542261 8.3:-17126353 None:intergenic
AAGAAGAATCTCAAGTGACT+TGG 0.543515 8.3:-17128635 None:intergenic
TTCACCCTCTTCTCTTGAAG+AGG 0.545965 8.3:+17127319 MS.gene48381:CDS
TAATAGAACATGGAAGGTAA+GGG 0.546637 8.3:+17127619 MS.gene48381:CDS
ATGCTTCTATTGGAAGATCA+AGG 0.547710 8.3:+17126751 MS.gene48381:CDS
GAATCATCCTTCGGTTGGAT+CGG 0.550035 8.3:+17127571 MS.gene48381:CDS
GGAGTAACTGATCCAAGAGT+TGG 0.552445 8.3:+17127194 MS.gene48381:CDS
TATATGTTCTTAGAGGGTGA+AGG 0.553039 8.3:-17126354 None:intergenic
GGAGGGAATCATCCTTCGGT+TGG 0.553087 8.3:+17127566 MS.gene48381:CDS
GGAGACACTTATGCTATGCT+AGG 0.554877 8.3:+17127110 MS.gene48381:CDS
CCATCAATATCAAGAGCTAA+GGG 0.557668 8.3:+17126627 MS.gene48381:CDS
CCTAGGAAATCAAAGATGCC+AGG 0.558189 8.3:+17126288 None:intergenic
TGGAGTACATTGTAGTTGTG+AGG 0.562184 8.3:+17128515 MS.gene48381:CDS
AAATGGCCAAGAAGTGGAAG+TGG 0.564594 8.3:+17127439 MS.gene48381:CDS
TTATTATATATGTTCTTAGA+GGG 0.565518 8.3:-17126360 None:intergenic
GCACATATGATGCAATTGGC+AGG 0.565574 8.3:+17128116 MS.gene48381:CDS
ACATAATTGAATTCTCAAGT+TGG 0.568682 8.3:-17127133 None:intergenic
TATGTGTTACAATAATGGGT+TGG 0.569715 8.3:+17127151 MS.gene48381:CDS
GAAATTCCTGTTGTTGAGGA+AGG 0.573452 8.3:+17127044 MS.gene48381:CDS
CTGAGTTGTATAATAGAACA+TGG 0.575405 8.3:+17127609 MS.gene48381:CDS
GGTATCAAATGGCCAAGAAG+TGG 0.579507 8.3:+17127433 MS.gene48381:CDS
TAATTTGACAGCCTCGCTCA+AGG 0.580135 8.3:-17128011 None:intergenic
CCACTAGCAATCTCTTCTGA+AGG 0.584600 8.3:-17127701 None:intergenic
CACATAACCAGATCCAAACT+CGG 0.593249 8.3:-17126945 None:intergenic
GATAACTCGAGAGCTTTCCT+CGG 0.595321 8.3:-17126879 None:intergenic
GTTGTATAATAGAACATGGA+AGG 0.597870 8.3:+17127613 MS.gene48381:CDS
GCAGCGGATAGAAGGTTGAT+GGG 0.602788 8.3:+17127341 MS.gene48381:CDS
GAGATACATAATGATGCCCC+TGG 0.603731 8.3:+17127800 MS.gene48381:CDS
GCTGCCTCTTCAAGAGAAGA+GGG 0.607015 8.3:-17127323 None:intergenic
ATGTTGTTGATGAGAAGAGA+AGG 0.609538 8.3:+17128566 MS.gene48381:CDS
TTTCATTAGGAGAGAATCCG+AGG 0.611050 8.3:+17126862 MS.gene48381:CDS
CAGGAATTGAAGCTCAAATG+GGG 0.612615 8.3:+17127840 MS.gene48381:CDS
GTACATTGTAGTTGTGAGGG+AGG 0.615028 8.3:+17128519 MS.gene48381:CDS
AAACACCTAAAAGTGTTGAG+AGG 0.620977 8.3:+17126415 MS.gene48381:CDS
CCTTCAGAAGAGATTGCTAG+TGG 0.623445 8.3:+17127701 MS.gene48381:CDS
TTATCACCCTGAAACTCTTG+GGG 0.630860 8.3:+17128075 MS.gene48381:CDS
TTGCCATGCTTGCTAAAACA+AGG 0.632268 8.3:-17127409 None:intergenic
CATTAAGTTGCACACAACAA+AGG 0.635240 8.3:-17127988 None:intergenic
ATATTAGTGGAGAACAAATG+AGG 0.636511 8.3:+17126541 MS.gene48381:CDS
AATTGTGTTCTGTTGGCCAG+GGG 0.640099 8.3:-17127816 None:intergenic
TGCAATTTGACGAAGCAGAG+AGG 0.640239 8.3:+17127258 MS.gene48381:CDS
AGCACTCGAGTTACTGCACA+AGG 0.644367 8.3:+17127772 MS.gene48381:CDS
ACAAAGACCGATCCAACCGA+AGG 0.663368 8.3:-17127578 None:intergenic
GCAACTTAATGCCTTGAGCG+AGG 0.674178 8.3:+17128000 MS.gene48381:CDS
AGGAATTGAAGCTCAAATGG+GGG 0.710252 8.3:+17127841 MS.gene48381:CDS
ATCATTGGCTCGATACGACG+AGG 0.712130 8.3:+17127496 MS.gene48381:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATATATGTTCTTAGA+GGG - chr8.3:17126363-17126382 None:intergenic 15.0%
!! TTTATTATATATGTTCTTAG+AGG - chr8.3:17126364-17126383 None:intergenic 15.0%
!!! ATTTTTATTAAAGAAAGCAA+GGG + chr8.3:17126833-17126852 MS.gene48381:CDS 15.0%
!! CAATTATGTGTTACAATAAT+GGG + chr8.3:17127147-17127166 MS.gene48381:CDS 20.0%
!! CTTGCTTTCTTTAATAAAAA+TGG - chr8.3:17126834-17126853 None:intergenic 20.0%
!! TCAATTATGTGTTACAATAA+TGG + chr8.3:17127146-17127165 MS.gene48381:CDS 20.0%
!!! ATACTAATTTTGAACATTAG+TGG - chr8.3:17128321-17128340 None:intergenic 20.0%
!!! CATTTTTATTAAAGAAAGCA+AGG + chr8.3:17126832-17126851 MS.gene48381:CDS 20.0%
!!! TTCATTTTATTTCCTTCAAT+TGG - chr8.3:17126321-17126340 None:intergenic 20.0%
! ACATAATTGAATTCTCAAGT+TGG - chr8.3:17127136-17127155 None:intergenic 25.0%
! ACTAGATCTAATAATCAAGT+AGG + chr8.3:17128294-17128313 MS.gene48381:intron 25.0%
! CTAGATCTAATAATCAAGTA+GGG + chr8.3:17128295-17128314 MS.gene48381:intron 25.0%
! CTTGATATTCATAGAGAAAA+TGG + chr8.3:17127296-17127315 MS.gene48381:CDS 25.0%
! TAATACTTGCAAACAAACAT+GGG - chr8.3:17128183-17128202 None:intergenic 25.0%
!!! GGTTTTGTTCTTAATCAAAT+GGG + chr8.3:17127965-17127984 MS.gene48381:CDS 25.0%
!!! GTGGTTTTTGAGATTTATAT+AGG + chr8.3:17128398-17128417 MS.gene48381:intron 25.0%
!!! TGGTTTTGTTCTTAATCAAA+TGG + chr8.3:17127964-17127983 MS.gene48381:CDS 25.0%
AAACCTAAGAATGCTTCTAT+TGG + chr8.3:17126741-17126760 MS.gene48381:CDS 30.0%
AAACTACATACCATATACTG+TGG - chr8.3:17128370-17128389 None:intergenic 30.0%
AAATGGTGAAAAAGATACTG+AGG + chr8.3:17126586-17126605 MS.gene48381:CDS 30.0%
AACTACATACCATATACTGT+GGG - chr8.3:17128369-17128388 None:intergenic 30.0%
AATGCCTCAATATCATGAAA+GGG - chr8.3:17128229-17128248 None:intergenic 30.0%
AATGGTGAAAAAGATACTGA+GGG + chr8.3:17126587-17126606 MS.gene48381:CDS 30.0%
ATAATAGAACATGGAAGGTA+AGG + chr8.3:17127618-17127637 MS.gene48381:CDS 30.0%
ATATTAGTGGAGAACAAATG+AGG + chr8.3:17126541-17126560 MS.gene48381:CDS 30.0%
CTGAGTTGTATAATAGAACA+TGG + chr8.3:17127609-17127628 MS.gene48381:CDS 30.0%
GATTCTTCTTGATGTTAATG+AGG + chr8.3:17128648-17128667 MS.gene48381:CDS 30.0%
GTAATACTTGCAAACAAACA+TGG - chr8.3:17128184-17128203 None:intergenic 30.0%
GTTGTATAATAGAACATGGA+AGG + chr8.3:17127613-17127632 MS.gene48381:CDS 30.0%
TAATAGAACATGGAAGGTAA+GGG + chr8.3:17127619-17127638 MS.gene48381:CDS 30.0%
TAATGCCTCAATATCATGAA+AGG - chr8.3:17128230-17128249 None:intergenic 30.0%
TCAGAATTTAGCCATATTAG+TGG + chr8.3:17126528-17126547 MS.gene48381:CDS 30.0%
TCATTTGTTCTCCACTAATA+TGG - chr8.3:17126542-17126561 None:intergenic 30.0%
TGTTTGAGAATTCTGCAAAT+GGG + chr8.3:17126919-17126938 MS.gene48381:CDS 30.0%
TTGTTTGAGAATTCTGCAAA+TGG + chr8.3:17126918-17126937 MS.gene48381:CDS 30.0%
! GAAGTACAAAGAAAGGTTTT+GGG + chr8.3:17127173-17127192 MS.gene48381:CDS 30.0%
! GGTCTTATATGTGAAACTAA+TGG + chr8.3:17127362-17127381 MS.gene48381:CDS 30.0%
! TGAAGAAGCAAAGATTGTTT+TGG + chr8.3:17128036-17128055 MS.gene48381:CDS 30.0%
!! CAAATAACTATAGCTTGCTT+TGG - chr8.3:17128254-17128273 None:intergenic 30.0%
!! GTACTATGATATGCTATTTC+AGG + chr8.3:17128470-17128489 MS.gene48381:intron 30.0%
!! TATGATATGCTATTTCAGGA+TGG + chr8.3:17128474-17128493 MS.gene48381:intron 30.0%
!! TATGTGTTACAATAATGGGT+TGG + chr8.3:17127151-17127170 MS.gene48381:CDS 30.0%
!!! ATTGTTTTGGAACAAGAGTA+CGG + chr8.3:17128049-17128068 MS.gene48381:CDS 30.0%
!!! GTTGTACTTTGTTTTCTCAA+AGG - chr8.3:17126702-17126721 None:intergenic 30.0%
AAGAAGAATCTCAAGTGACT+TGG - chr8.3:17128638-17128657 None:intergenic 35.0%
AATAAAAATGGTCCAAGCTC+AGG - chr8.3:17126822-17126841 None:intergenic 35.0%
ACCATCAATATCAAGAGCTA+AGG + chr8.3:17126626-17126645 MS.gene48381:CDS 35.0%
ATAAACCAACCCACAGTATA+TGG + chr8.3:17128357-17128376 MS.gene48381:intron 35.0%
ATATGTTCTTAGAGGGTGAA+GGG - chr8.3:17126356-17126375 None:intergenic 35.0%
ATGCCTCAATATCATGAAAG+GGG - chr8.3:17128228-17128247 None:intergenic 35.0%
ATGCTTCTATTGGAAGATCA+AGG + chr8.3:17126751-17126770 MS.gene48381:CDS 35.0%
CAGTTTGGGTCATTATAATG+AGG + chr8.3:17126995-17127014 MS.gene48381:CDS 35.0%
CCATCAATATCAAGAGCTAA+GGG + chr8.3:17126627-17126646 MS.gene48381:CDS 35.0%
GCAGCAATATATTGCAGTTT+GGG + chr8.3:17126981-17127000 MS.gene48381:CDS 35.0%
GGACGATGCAATTGATATTA+TGG + chr8.3:17128495-17128514 MS.gene48381:CDS 35.0%
TATATACCCCAAGAGTTTCA+GGG - chr8.3:17128084-17128103 None:intergenic 35.0%
TATATGTTCTTAGAGGGTGA+AGG - chr8.3:17126357-17126376 None:intergenic 35.0%
TGCAGCAATATATTGCAGTT+TGG + chr8.3:17126980-17126999 MS.gene48381:CDS 35.0%
TTTCCATTCTTCCTTTCAAC+AGG - chr8.3:17126675-17126694 None:intergenic 35.0%
! AAGCATTGTAAGATTCAGTC+TGG - chr8.3:17127889-17127908 None:intergenic 35.0%
! ACATTTGATAATCCTGAGCT+TGG + chr8.3:17126807-17126826 MS.gene48381:CDS 35.0%
! ATGTTGTTGATGAGAAGAGA+AGG + chr8.3:17128566-17128585 MS.gene48381:CDS 35.0%
! CATTAAGTTGCACACAACAA+AGG - chr8.3:17127991-17128010 None:intergenic 35.0%
! GAGAAAAAATCGGCTTTCTT+TGG + chr8.3:17127944-17127963 MS.gene48381:CDS 35.0%
! GCAAGGGATTTGATTTCATT+AGG + chr8.3:17126849-17126868 MS.gene48381:CDS 35.0%
! TGAAACCTCTCAACACTTTT+AGG - chr8.3:17126423-17126442 None:intergenic 35.0%
!! AAACACCTAAAAGTGTTGAG+AGG + chr8.3:17126415-17126434 MS.gene48381:CDS 35.0%
!! AAGGTTGGAAGTATTGTTGA+AGG + chr8.3:17128585-17128604 MS.gene48381:CDS 35.0%
!! CAACACTTTTAGGTGTTTGT+GGG - chr8.3:17126413-17126432 None:intergenic 35.0%
!! CTTCCAATAGAAGCATTCTT+AGG - chr8.3:17126747-17126766 None:intergenic 35.0%
!! GAAGTATTGTTGAAGGAAAC+AGG + chr8.3:17128592-17128611 MS.gene48381:CDS 35.0%
!! GGAAGTACAAAGAAAGGTTT+TGG + chr8.3:17127172-17127191 MS.gene48381:CDS 35.0%
!! TCAACACTTTTAGGTGTTTG+TGG - chr8.3:17126414-17126433 None:intergenic 35.0%
!! TTTTCAAGACTCACAAAGGA+GGG + chr8.3:17127549-17127568 MS.gene48381:CDS 35.0%
ACATACCATATACTGTGGGT+TGG - chr8.3:17128365-17128384 None:intergenic 40.0%
AGCATGGCAATGGTATCAAA+TGG + chr8.3:17127422-17127441 MS.gene48381:CDS 40.0%
AGCTACGGGAGAGAAAAAAT+CGG + chr8.3:17127934-17127953 MS.gene48381:CDS 40.0%
AGGAATTGAAGCTCAAATGG+GGG + chr8.3:17127841-17127860 MS.gene48381:CDS 40.0%
ATCTATGAAAATCCCATGCC+TGG + chr8.3:17127674-17127693 MS.gene48381:CDS 40.0%
CACATAACCAGATCCAAACT+CGG - chr8.3:17126948-17126967 None:intergenic 40.0%
CAGGAATTGAAGCTCAAATG+GGG + chr8.3:17127840-17127859 MS.gene48381:CDS 40.0%
CCTTCAATTGGAACAATACC+TGG - chr8.3:17126309-17126328 None:intergenic 40.0%
CTACAAGTTTCACCAACTCT+TGG - chr8.3:17127209-17127228 None:intergenic 40.0%
CTATATACCCCAAGAGTTTC+AGG - chr8.3:17128085-17128104 None:intergenic 40.0%
CTTATCACCCTGAAACTCTT+GGG + chr8.3:17128074-17128093 MS.gene48381:CDS 40.0%
CTTCAAAACCTCCTGTTGAA+AGG + chr8.3:17126661-17126680 MS.gene48381:CDS 40.0%
GAAATTCCTGTTGTTGAGGA+AGG + chr8.3:17127044-17127063 MS.gene48381:CDS 40.0%
GAAGATGGAGATAGTGAAAG+AGG + chr8.3:17126563-17126582 MS.gene48381:CDS 40.0%
GATCGAAATTCCTGTTGTTG+AGG + chr8.3:17127040-17127059 MS.gene48381:CDS 40.0%
GCAGGAATTGAAGCTCAAAT+GGG + chr8.3:17127839-17127858 MS.gene48381:CDS 40.0%
GGAGATAGTGAAAGAGGAAA+TGG + chr8.3:17126569-17126588 MS.gene48381:CDS 40.0%
GGAGTACATTGTAGTTGTGA+GGG + chr8.3:17128516-17128535 MS.gene48381:CDS 40.0%
GGGGTCATATACTATGTGTT+GGG + chr8.3:17127860-17127879 MS.gene48381:CDS 40.0%
GTATGTAGTTTCTTGCTTCG+TGG + chr8.3:17128379-17128398 MS.gene48381:intron 40.0%
TGCAGGAATTGAAGCTCAAA+TGG + chr8.3:17127838-17127857 MS.gene48381:CDS 40.0%
TGGAAATCATGAAGCAGCAT+TGG + chr8.3:17127382-17127401 MS.gene48381:CDS 40.0%
TGGAGAACAAATGAGGAAGA+TGG + chr8.3:17126548-17126567 MS.gene48381:CDS 40.0%
TGGAGACACATTCCTATCAT+TGG + chr8.3:17127481-17127500 MS.gene48381:CDS 40.0%
TGGAGTACATTGTAGTTGTG+AGG + chr8.3:17128515-17128534 MS.gene48381:CDS 40.0%
TTATCACCCTGAAACTCTTG+GGG + chr8.3:17128075-17128094 MS.gene48381:CDS 40.0%
TTCCTGCAATTGTGTTCTGT+TGG - chr8.3:17127826-17127845 None:intergenic 40.0%
TTGTGAGGGAGGAAAAACTT+GGG + chr8.3:17128530-17128549 MS.gene48381:CDS 40.0%
TTTCATTAGGAGAGAATCCG+AGG + chr8.3:17126862-17126881 MS.gene48381:CDS 40.0%
! CCAGGTATTGTTCCAATTGA+AGG + chr8.3:17126306-17126325 MS.gene48381:CDS 40.0%
! CCCTTAGCTCTTGATATTGA+TGG - chr8.3:17126630-17126649 None:intergenic 40.0%
! GCTTTGGATCTGATAGTGAT+TGG + chr8.3:17126493-17126512 MS.gene48381:CDS 40.0%
! TGGGTTGGAAGTACAAAGAA+AGG + chr8.3:17127166-17127185 MS.gene48381:CDS 40.0%
! TGTTGATGAGAAGAGAAGGT+TGG + chr8.3:17128570-17128589 MS.gene48381:CDS 40.0%
! TTGCCATGCTTGCTAAAACA+AGG - chr8.3:17127412-17127431 None:intergenic 40.0%
!! CAAGAGTTGGTGAAACTTGT+AGG + chr8.3:17127207-17127226 MS.gene48381:CDS 40.0%
!! CTTTCAACAGGAGGTTTTGA+AGG - chr8.3:17126663-17126682 None:intergenic 40.0%
!! GGCGTATAAAAAAGCGTTAG+CGG + chr8.3:17127526-17127545 MS.gene48381:CDS 40.0%
!! GTTTTCAAGACTCACAAAGG+AGG + chr8.3:17127548-17127567 MS.gene48381:CDS 40.0%
!! TCGATCGATCGCTCTAAAAT+TGG - chr8.3:17127026-17127045 None:intergenic 40.0%
!!! CGCTTTTTTATACGCCAAGA+TGG - chr8.3:17127522-17127541 None:intergenic 40.0%
!!! TGTTTTAGCAAGCATGGCAA+TGG + chr8.3:17127412-17127431 MS.gene48381:CDS 40.0%
AAATGGCCAAGAAGTGGAAG+TGG + chr8.3:17127439-17127458 MS.gene48381:CDS 45.0%
AAGTCGAGTCGACGATTCTA+AGG + chr8.3:17126779-17126798 MS.gene48381:CDS 45.0%
AATTGTGTTCTGTTGGCCAG+GGG - chr8.3:17127819-17127838 None:intergenic 45.0%
ACACGCTCAAGTCAAAGCTT+TGG + chr8.3:17126477-17126496 MS.gene48381:CDS 45.0%
ATTTCGCAATTGCCTGTTGC+TGG - chr8.3:17127070-17127089 None:intergenic 45.0%
CAAAGGAGGGAATCATCCTT+CGG + chr8.3:17127562-17127581 MS.gene48381:CDS 45.0%
CAATTGTGTTCTGTTGGCCA+GGG - chr8.3:17127820-17127839 None:intergenic 45.0%
CCAAGAGTTTCAGGGTGATA+AGG - chr8.3:17128076-17128095 None:intergenic 45.0%
CCACTAGCAATCTCTTCTGA+AGG - chr8.3:17127704-17127723 None:intergenic 45.0%
CCATTCTTCCTTTCAACAGG+AGG - chr8.3:17126672-17126691 None:intergenic 45.0%
CCTCCTGTTGAAAGGAAGAA+TGG + chr8.3:17126669-17126688 MS.gene48381:CDS 45.0%
CCTTATCACCCTGAAACTCT+TGG + chr8.3:17128073-17128092 MS.gene48381:CDS 45.0%
CCTTCAGAAGAGATTGCTAG+TGG + chr8.3:17127701-17127720 MS.gene48381:CDS 45.0%
GAATCATCCTTCGGTTGGAT+CGG + chr8.3:17127571-17127590 MS.gene48381:CDS 45.0%
GAGATACATAATGATGCCCC+TGG + chr8.3:17127800-17127819 MS.gene48381:CDS 45.0%
GATAACTCGAGAGCTTTCCT+CGG - chr8.3:17126882-17126901 None:intergenic 45.0%
GCACATATGATGCAATTGGC+AGG + chr8.3:17128116-17128135 MS.gene48381:CDS 45.0%
GCACCCCTTTCATGATATTG+AGG + chr8.3:17128222-17128241 MS.gene48381:intron 45.0%
GCTGGCACATATGATGCAAT+TGG + chr8.3:17128112-17128131 MS.gene48381:CDS 45.0%
GGAGACACTTATGCTATGCT+AGG + chr8.3:17127110-17127129 MS.gene48381:CDS 45.0%
GGAGTAACTGATCCAAGAGT+TGG + chr8.3:17127194-17127213 MS.gene48381:CDS 45.0%
GGGGGTCATATACTATGTGT+TGG + chr8.3:17127859-17127878 MS.gene48381:CDS 45.0%
GGGGTATATAGCAATCTTGC+TGG + chr8.3:17128094-17128113 MS.gene48381:CDS 45.0%
GGTATCAAATGGCCAAGAAG+TGG + chr8.3:17127433-17127452 MS.gene48381:CDS 45.0%
GTACATTGTAGTTGTGAGGG+AGG + chr8.3:17128519-17128538 MS.gene48381:CDS 45.0%
GTTGTGAGGGAGGAAAAACT+TGG + chr8.3:17128529-17128548 MS.gene48381:CDS 45.0%
TAATTTGACAGCCTCGCTCA+AGG - chr8.3:17128014-17128033 None:intergenic 45.0%
TGAAGGAAACAGGCAGAGTT+CGG + chr8.3:17128602-17128621 MS.gene48381:CDS 45.0%
TGCAAATGGGAAACCGAGTT+TGG + chr8.3:17126932-17126951 MS.gene48381:CDS 45.0%
TGCAATTTGACGAAGCAGAG+AGG + chr8.3:17127258-17127277 MS.gene48381:CDS 45.0%
TGGATCGGTCTTTGTACGTT+TGG + chr8.3:17127586-17127605 MS.gene48381:CDS 45.0%
TGTCTCAAAGCTTCGAGCTA+CGG + chr8.3:17127919-17127938 MS.gene48381:CDS 45.0%
TGTGGGCTCAATGGTATTCT+TGG - chr8.3:17126396-17126415 None:intergenic 45.0%
TTAGGTGTTTGTGGGCTCAA+TGG - chr8.3:17126405-17126424 None:intergenic 45.0%
TTCACCCTCTTCTCTTGAAG+AGG + chr8.3:17127319-17127338 MS.gene48381:CDS 45.0%
!! GCGGTTTTCAAGACTCACAA+AGG + chr8.3:17127545-17127564 MS.gene48381:CDS 45.0%
!!! GCACCTTGTTTTAGCAAGCA+TGG + chr8.3:17127406-17127425 MS.gene48381:CDS 45.0%
!!! TCAACAGGAGGTTTTGAAGG+AGG - chr8.3:17126660-17126679 None:intergenic 45.0%
ACAAAGACCGATCCAACCGA+AGG - chr8.3:17127581-17127600 None:intergenic 50.0%
AGCACTCGAGTTACTGCACA+AGG + chr8.3:17127772-17127791 MS.gene48381:CDS 50.0%
CGTCGTATCGAGCCAATGAT+AGG - chr8.3:17127496-17127515 None:intergenic 50.0%
CTCTTCTCTTGAAGAGGCAG+CGG + chr8.3:17127325-17127344 MS.gene48381:CDS 50.0%
GCAACTTAATGCCTTGAGCG+AGG + chr8.3:17128000-17128019 MS.gene48381:CDS 50.0%
GCAATTGTGTTCTGTTGGCC+AGG - chr8.3:17127821-17127840 None:intergenic 50.0%
GCTGCCTCTTCAAGAGAAGA+GGG - chr8.3:17127326-17127345 None:intergenic 50.0%
GGCCAACAGAACACAATTGC+AGG + chr8.3:17127821-17127840 MS.gene48381:CDS 50.0%
GTCTCAAAGCTTCGAGCTAC+GGG + chr8.3:17127920-17127939 MS.gene48381:CDS 50.0%
GTCTCCAAGTTGCATGTGAC+TGG - chr8.3:17127096-17127115 None:intergenic 50.0%
TGGGAAACCGAGTTTGGATC+TGG + chr8.3:17126938-17126957 MS.gene48381:CDS 50.0%
TTCGCCAGTCACATGCAACT+TGG + chr8.3:17127089-17127108 MS.gene48381:CDS 50.0%
TTGAAGAGGCAGCGGATAGA+AGG + chr8.3:17127333-17127352 MS.gene48381:CDS 50.0%
! ATCTCTTCTGAAGGAACGCC+AGG - chr8.3:17127695-17127714 None:intergenic 50.0%
! GCAGCGGATAGAAGGTTGAT+GGG + chr8.3:17127341-17127360 MS.gene48381:CDS 50.0%
! GCGTCTGTTGATTGCAGCAT+TGG + chr8.3:17127461-17127480 MS.gene48381:CDS 50.0%
!! ATCATTGGCTCGATACGACG+AGG + chr8.3:17127496-17127515 MS.gene48381:CDS 50.0%
CAGACGCCACTTCCACTTCT+TGG - chr8.3:17127448-17127467 None:intergenic 55.0%
CGCTGCCTCTTCAAGAGAAG+AGG - chr8.3:17127327-17127346 None:intergenic 55.0%
GGAGGGAATCATCCTTCGGT+TGG + chr8.3:17127566-17127585 MS.gene48381:CDS 55.0%
GGCAGCGGATAGAAGGTTGA+TGG + chr8.3:17127340-17127359 MS.gene48381:CDS 55.0%
TCGATACGACGAGGCCATCT+TGG + chr8.3:17127505-17127524 MS.gene48381:CDS 55.0%
TCTGAAGGAACGCCAGGCAT+GGG - chr8.3:17127689-17127708 None:intergenic 55.0%
TGTTGAGGAAGGCCAGCAAC+AGG + chr8.3:17127055-17127074 MS.gene48381:CDS 55.0%
! TTCTGAAGGAACGCCAGGCA+TGG - chr8.3:17127690-17127709 None:intergenic 55.0%
!! TGCTGGCCTTCCTCAACAAC+AGG - chr8.3:17127053-17127072 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 17126303 17128675 17126303 ID=MS.gene48381
chr8.3 mRNA 17126303 17128675 17126303 ID=MS.gene48381.t1;Parent=MS.gene48381
chr8.3 exon 17126303 17128137 17126303 ID=MS.gene48381.t1.exon1;Parent=MS.gene48381.t1
chr8.3 CDS 17126303 17128137 17126303 ID=cds.MS.gene48381.t1;Parent=MS.gene48381.t1
chr8.3 exon 17128492 17128675 17128492 ID=MS.gene48381.t1.exon2;Parent=MS.gene48381.t1
chr8.3 CDS 17128492 17128675 17128492 ID=cds.MS.gene48381.t1;Parent=MS.gene48381.t1
Gene Sequence

>MS.gene48381

ATGCCAGGTATTGTTCCAATTGAAGGAAATAAAATGAATGAACTTGAGAACCCTTCACCCTCTAAGAACATATATAATAAAATCAATTCACCAAGAATACCATTGAGCCCACAAACACCTAAAAGTGTTGAGAGGTTTCATGAAATTGTACATGATGCAAGACGTTCGCGTCGAACACGCTCAAGTCAAAGCTTTGGATCTGATAGTGATTGGTCTTTAACTGATTCAGAATTTAGCCATATTAGTGGAGAACAAATGAGGAAGATGGAGATAGTGAAAGAGGAAATGGTGAAAAAGATACTGAGGGATTCTAGCAGTGAAACACCATCAATATCAAGAGCTAAGGGAAAAAATCCTCCTTCAAAACCTCCTGTTGAAAGGAAGAATGGAAACAATCCTTTGAGAAAACAAAGTACAACAGTTACTAATCGTGTTGTAAAACCTAAGAATGCTTCTATTGGAAGATCAAGGTCACAAAGTCGAGTCGACGATTCTAAGGAATCAACATTTGATAATCCTGAGCTTGGACCATTTTTATTAAAGAAAGCAAGGGATTTGATTTCATTAGGAGAGAATCCGAGGAAAGCTCTCGAGTTATCGCTTCAAGCGATGAAATTGTTTGAGAATTCTGCAAATGGGAAACCGAGTTTGGATCTGGTTATGTGTTTACATGTTACTGCAGCAATATATTGCAGTTTGGGTCATTATAATGAGGCAATTCCAATTTTAGAGCGATCGATCGAAATTCCTGTTGTTGAGGAAGGCCAGCAACAGGCAATTGCGAAATTCGCCAGTCACATGCAACTTGGAGACACTTATGCTATGCTAGGCCAACTTGAGAATTCAATTATGTGTTACAATAATGGGTTGGAAGTACAAAGAAAGGTTTTGGGAGTAACTGATCCAAGAGTTGGTGAAACTTGTAGGTATGTAGCAGAAGCTAATTTTCAAGCATTGCAATTTGACGAAGCAGAGAGGCTGTGTCAAATTGCTCTTGATATTCATAGAGAAAATGGTTCACCCTCTTCTCTTGAAGAGGCAGCGGATAGAAGGTTGATGGGTCTTATATGTGAAACTAATGGAAATCATGAAGCAGCATTGGAGCACCTTGTTTTAGCAAGCATGGCAATGGTATCAAATGGCCAAGAAGTGGAAGTGGCGTCTGTTGATTGCAGCATTGGAGACACATTCCTATCATTGGCTCGATACGACGAGGCCATCTTGGCGTATAAAAAAGCGTTAGCGGTTTTCAAGACTCACAAAGGAGGGAATCATCCTTCGGTTGGATCGGTCTTTGTACGTTTGGCTGAGTTGTATAATAGAACATGGAAGGTAAGGGAATCAAAATTATATTGTGAAAATGCACTTAAAATCTATGAAAATCCCATGCCTGGCGTTCCTTCAGAAGAGATTGCTAGTGGTCTTGTGAACGTTGCAGCTATTTACGAGTCAATGAATGAGCTTGAACAAGCACTCGAGTTACTGCACAAGGCACTAGAGATACATAATGATGCCCCTGGCCAACAGAACACAATTGCAGGAATTGAAGCTCAAATGGGGGTCATATACTATGTGTTGGGAAACCAGACTGAATCTTACAATGCTTTCAAGAATGCTGTCTCAAAGCTTCGAGCTACGGGAGAGAAAAAATCGGCTTTCTTTGGTTTTGTTCTTAATCAAATGGGCCTTTGTTGTGTGCAACTTAATGCCTTGAGCGAGGCTGTCAAATTATTTGAAGAAGCAAAGATTGTTTTGGAACAAGAGTACGGTCCTTATCACCCTGAAACTCTTGGGGTATATAGCAATCTTGCTGGCACATATGATGCAATTGGCAGGTATACATTCTTAGTTTGTGACTGTCTTTTTTTGTTGTTATACCCATGTTTGTTTGCAAGTATTACTTCAAGATTTGAATATTTGCACCCCTTTCATGATATTGAGGCATTATCCAAAGCAAGCTATAGTTATTTGTGATGTTGTATATATATTTTACTAGATCTAATAATCAAGTAGGGCCACTAATGTTCAAAATTAGTATAATGTCTATTATTTGAATAAACCAACCCACAGTATATGGTATGTAGTTTCTTGCTTCGTGGTTTTTGAGATTTATATAGGTTAGATATGATCAAATAAGAAATGATTATGTGAAAGTTATTTTGTTCATGTACTATGATATGCTATTTCAGGATGGACGATGCAATTGATATTATGGAGTACATTGTAGTTGTGAGGGAGGAAAAACTTGGGACAGCACACTTTGATGTTGTTGATGAGAAGAGAAGGTTGGAAGTATTGTTGAAGGAAACAGGCAGAGTTCGGAACAGAAAAACCAAGTCACTTGAGATTCTTCTTGATGTTAATGAGGACTAA

Protein sequence

>MS.gene48381.t1

MPGIVPIEGNKMNELENPSPSKNIYNKINSPRIPLSPQTPKSVERFHEIVHDARRSRRTRSSQSFGSDSDWSLTDSEFSHISGEQMRKMEIVKEEMVKKILRDSSSETPSISRAKGKNPPSKPPVERKNGNNPLRKQSTTVTNRVVKPKNASIGRSRSQSRVDDSKESTFDNPELGPFLLKKARDLISLGENPRKALELSLQAMKLFENSANGKPSLDLVMCLHVTAAIYCSLGHYNEAIPILERSIEIPVVEEGQQQAIAKFASHMQLGDTYAMLGQLENSIMCYNNGLEVQRKVLGVTDPRVGETCRYVAEANFQALQFDEAERLCQIALDIHRENGSPSSLEEAADRRLMGLICETNGNHEAALEHLVLASMAMVSNGQEVEVASVDCSIGDTFLSLARYDEAILAYKKALAVFKTHKGGNHPSVGSVFVRLAELYNRTWKVRESKLYCENALKIYENPMPGVPSEEIASGLVNVAAIYESMNELEQALELLHKALEIHNDAPGQQNTIAGIEAQMGVIYYVLGNQTESYNAFKNAVSKLRATGEKKSAFFGFVLNQMGLCCVQLNALSEAVKLFEEAKIVLEQEYGPYHPETLGVYSNLAGTYDAIGRMDDAIDIMEYIVVVREEKLGTAHFDVVDEKRRLEVLLKETGRVRNRKTKSLEILLDVNED