Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48403.t1 | XP_003602904.2 | 99.1 | 351 | 3 | 0 | 33 | 383 | 85 | 435 | 1.80E-195 | 691.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48403.t1 | Q9LEU8 | 79.2 | 351 | 73 | 0 | 33 | 383 | 83 | 433 | 3.5e-163 | 575.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48403.t1 | G7J530 | 99.1 | 351 | 3 | 0 | 33 | 383 | 85 | 435 | 1.3e-195 | 691.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene48403 | 0.801024 | 1.09E-48 | -1.69E-46 |
| MS.gene049824 | MS.gene48403 | 0.802683 | 4.99E-49 | -1.69E-46 |
| MS.gene059154 | MS.gene48403 | 0.808918 | 2.45E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48403.t1 | MTR_3g100220 | 99.145 | 351 | 3 | 0 | 33 | 383 | 85 | 435 | 0.0 | 721 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48403.t1 | AT5G10920 | 78.977 | 352 | 74 | 0 | 32 | 383 | 82 | 433 | 0.0 | 595 |
Find 84 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACAGTGTTAGAACTATTT+TGG | 0.122795 | 3.1:-79656741 | MS.gene48403:CDS |
| ACCCCAAAGTTTAGCTTCTT+TGG | 0.166714 | 3.1:+79658617 | None:intergenic |
| TCGAGAGTGGTGAGTTTAAT+TGG | 0.187249 | 3.1:-79658332 | MS.gene48403:CDS |
| CTGTGGGCTTCAGAGGAATT+TGG | 0.246553 | 3.1:-79657096 | MS.gene48403:CDS |
| CCCCAAAGTTTAGCTTCTTT+GGG | 0.276588 | 3.1:+79658618 | None:intergenic |
| GCTTGTGCGTTGGCTGGTAC+AGG | 0.319298 | 3.1:-79657410 | MS.gene48403:CDS |
| GTTTGATCAGTGCGAGTGAT+AGG | 0.329792 | 3.1:-79658395 | MS.gene48403:CDS |
| GGATTCTATTATTGAAGGTT+TGG | 0.334686 | 3.1:-79658373 | MS.gene48403:CDS |
| GGTAAGTCTGCCAGAGTCAT+AGG | 0.335284 | 3.1:-79656988 | MS.gene48403:CDS |
| AATCAGGGTCTTATTGTTCC+TGG | 0.340643 | 3.1:-79658105 | MS.gene48403:CDS |
| AACTTGATCATTTCTACTTC+TGG | 0.342542 | 3.1:+79658224 | None:intergenic |
| TAAGCTGGCTTTGAACAATC+AGG | 0.392509 | 3.1:-79658121 | MS.gene48403:CDS |
| ACCCAAAGAAGCTAAACTTT+GGG | 0.395380 | 3.1:-79658619 | MS.gene48403:CDS |
| CAATGAACATTACTTTCAAT+CGG | 0.395660 | 3.1:-79656691 | MS.gene48403:CDS |
| TGCTTACAATCGTGATTTGC+AGG | 0.397013 | 3.1:-79656923 | MS.gene48403:intron |
| GATTCTATTATTGAAGGTTT+GGG | 0.400207 | 3.1:-79658372 | MS.gene48403:CDS |
| TGCATCCATGCTCGCTAAAC+AGG | 0.414393 | 3.1:-79658489 | MS.gene48403:intron |
| CTGTTGAAACAGAATCGCTT+GGG | 0.414810 | 3.1:+79657064 | None:intergenic |
| AAGAATACAAAAGGCTTTAC+CGG | 0.418379 | 3.1:-79656666 | MS.gene48403:CDS |
| CGCTGATTATCTTGTTAAGA+AGG | 0.421388 | 3.1:-79656618 | MS.gene48403:CDS |
| TTAGGGGCTTGTGCGTTGGC+TGG | 0.427204 | 3.1:-79657416 | MS.gene48403:CDS |
| AGAAGGTGCTGTAATAAAAC+AGG | 0.428088 | 3.1:+79658057 | None:intergenic |
| TTACTGCTCCAATGAGGAAT+AGG | 0.432342 | 3.1:-79657346 | MS.gene48403:intron |
| AACCCAAAGAAGCTAAACTT+TGG | 0.437199 | 3.1:-79658620 | MS.gene48403:CDS |
| TTCTCGACTTGGTGAAGAAT+GGG | 0.446818 | 3.1:-79657121 | MS.gene48403:CDS |
| TTTCTCGACTTGGTGAAGAA+TGG | 0.448284 | 3.1:-79657122 | MS.gene48403:CDS |
| TCAACTTTCATTGCTTAAGC+TGG | 0.453847 | 3.1:-79658136 | MS.gene48403:CDS |
| AATGAACATTACTTTCAATC+GGG | 0.455024 | 3.1:-79656690 | MS.gene48403:CDS |
| ATTCATGACATCGGATGCAT+TGG | 0.456659 | 3.1:-79657372 | MS.gene48403:CDS |
| TTGCAGATTGAGCGTGATGC+TGG | 0.458156 | 3.1:-79657479 | MS.gene48403:intron |
| TTATACAAACATGACATTAG+AGG | 0.459314 | 3.1:-79658524 | MS.gene48403:CDS |
| CCAAGCGATTCTGTTTCAAC+AGG | 0.459444 | 3.1:-79657063 | MS.gene48403:CDS |
| CGATGTCATGAATCGATCAA+TGG | 0.461237 | 3.1:+79657382 | None:intergenic |
| GTAAGATACCTATTCCTCAT+TGG | 0.466006 | 3.1:+79657338 | None:intergenic |
| CCTGTTGAAACAGAATCGCT+TGG | 0.466168 | 3.1:+79657063 | None:intergenic |
| CTTGTGCGTTGGCTGGTACA+GGG | 0.468110 | 3.1:-79657409 | MS.gene48403:CDS |
| TTCTGACCGAGATTTCCTGC+TGG | 0.468285 | 3.1:-79657181 | MS.gene48403:CDS |
| CGAACAAGTTCCATTGGATC+AGG | 0.470603 | 3.1:+79657012 | None:intergenic |
| GCTGCTCTTACTGATTTGAT+TGG | 0.475293 | 3.1:-79658273 | MS.gene48403:CDS |
| CAATCGGGAAAGAATACAAA+AGG | 0.481128 | 3.1:-79656675 | MS.gene48403:CDS |
| TCCTTTAGGGGCTTGTGCGT+TGG | 0.482828 | 3.1:-79657420 | MS.gene48403:CDS |
| ACCTACCTGTTTAGCGAGCA+TGG | 0.484713 | 3.1:+79658484 | None:intergenic |
| GAAGTATGTAACTTCTTAGC+AGG | 0.486485 | 3.1:+79658246 | None:intergenic |
| GATAGGGATTCTATTATTGA+AGG | 0.491597 | 3.1:-79658378 | MS.gene48403:CDS |
| TTCATGACATCGGATGCATT+GGG | 0.494059 | 3.1:-79657371 | MS.gene48403:CDS |
| TAATTGGAGAGCTGATAGAG+AGG | 0.498860 | 3.1:-79658316 | MS.gene48403:CDS |
| ATACAAAAGGCTTTACCGGC+TGG | 0.499237 | 3.1:-79656662 | MS.gene48403:CDS |
| TCTGCTTGCTTATGTTGAAG+AGG | 0.512207 | 3.1:-79658037 | MS.gene48403:intron |
| GATGTCATGAATCGATCAAT+GGG | 0.518952 | 3.1:+79657383 | None:intergenic |
| ATGGGTACTGTGGGCTTCAG+AGG | 0.519124 | 3.1:-79657103 | MS.gene48403:CDS |
| GAAACTCCAGCAGGAAATCT+CGG | 0.521904 | 3.1:+79657175 | None:intergenic |
| GTAAGTCTGCCAGAGTCATA+GGG | 0.524586 | 3.1:-79656987 | MS.gene48403:CDS |
| GTTTGATTGATTGTAGAGCT+AGG | 0.529508 | 3.1:-79657454 | MS.gene48403:CDS |
| GCAGTGCACCTTTCTCGACT+TGG | 0.530755 | 3.1:-79657132 | MS.gene48403:CDS |
| TTGTTACTGATTTACGACTT+TGG | 0.532012 | 3.1:-79658203 | MS.gene48403:CDS |
| TTTGATCAGTGCGAGTGATA+GGG | 0.532025 | 3.1:-79658394 | MS.gene48403:CDS |
| TTACCACGAACAAGTTCCAT+TGG | 0.545026 | 3.1:+79657006 | None:intergenic |
| ATTCTTCACCAAGTCGAGAA+AGG | 0.545808 | 3.1:+79657124 | None:intergenic |
| AGTGAATCGTTCGACGGCGT+CGG | 0.556272 | 3.1:+79658572 | None:intergenic |
| ATTGAAAAGAGAATCGAGAG+TGG | 0.563997 | 3.1:-79658345 | MS.gene48403:CDS |
| TGGGGTGGAAGATTCGAAGA+AGG | 0.565960 | 3.1:-79658600 | MS.gene48403:CDS |
| GCCAACGCACAAGCCCCTAA+AGG | 0.569555 | 3.1:+79657419 | None:intergenic |
| CGCTGCAAATGAGTATAACC+AGG | 0.570144 | 3.1:+79658087 | None:intergenic |
| AGAAAGGTGCACTGCTGTGA+TGG | 0.574379 | 3.1:+79657140 | None:intergenic |
| GATCCAATGGAACTTGTTCG+TGG | 0.578604 | 3.1:-79657009 | MS.gene48403:CDS |
| AACTGTTTATCTATAAGAGA+CGG | 0.586102 | 3.1:+79658545 | None:intergenic |
| TGGTGAAGAATGGGTACTGT+GGG | 0.591067 | 3.1:-79657112 | MS.gene48403:CDS |
| AAGCTGGCTTTGAACAATCA+GGG | 0.595353 | 3.1:-79658120 | MS.gene48403:CDS |
| CCCAAAGAAGCTAAACTTTG+GGG | 0.616189 | 3.1:-79658618 | MS.gene48403:CDS |
| CATTGATCGATTCATGACAT+CGG | 0.617561 | 3.1:-79657381 | MS.gene48403:CDS |
| TAACAGAGAGAAACTCCAGC+AGG | 0.620141 | 3.1:+79657166 | None:intergenic |
| CTTCAACATAAGCAAGCAGA+AGG | 0.625456 | 3.1:+79658040 | None:intergenic |
| ACTCTTCTCACATTGTGCAA+AGG | 0.630735 | 3.1:-79656955 | MS.gene48403:CDS |
| AAAGAAGCTAAACTTTGGGG+TGG | 0.632299 | 3.1:-79658615 | MS.gene48403:CDS |
| CATATTGAATAGTATCGATG+CGG | 0.633815 | 3.1:-79657205 | MS.gene48403:intron |
| GTTCTAACACTGTCAAACAC+TGG | 0.634639 | 3.1:+79656749 | None:intergenic |
| TGGGATTTACTGCTCCAATG+AGG | 0.636183 | 3.1:-79657352 | MS.gene48403:CDS |
| TGTTGAAACAGAATCGCTTG+GGG | 0.644193 | 3.1:+79657065 | None:intergenic |
| TTGGTGAAGAATGGGTACTG+TGG | 0.649560 | 3.1:-79657113 | MS.gene48403:CDS |
| TAAGTCTGCCAGAGTCATAG+GGG | 0.665309 | 3.1:-79656986 | MS.gene48403:CDS |
| GTTGCATCAAGATAACCAGC+CGG | 0.668367 | 3.1:+79656647 | None:intergenic |
| AAATCACGATTGTAAGCATG+TGG | 0.678548 | 3.1:+79656928 | None:intergenic |
| GGATTCAGTGAATCGTTCGA+CGG | 0.682856 | 3.1:+79658566 | None:intergenic |
| AAGTCTGCCAGAGTCATAGG+GGG | 0.718882 | 3.1:-79656985 | MS.gene48403:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGAATTTGTGTTTTTTTA+GGG | - | chr3.1:79656806-79656825 | MS.gene48403:intron | 15.0% |
| !!! | TATTGAATTTGTGTTTTTTT+AGG | - | chr3.1:79656805-79656824 | MS.gene48403:intron | 15.0% |
| !!! | TATTTGAGATTCATTAAAAA+TGG | - | chr3.1:79658419-79658438 | MS.gene48403:intron | 15.0% |
| !! | ATATGAATAACAAATCTATG+AGG | + | chr3.1:79657545-79657564 | None:intergenic | 20.0% |
| !! | ATTATGTTAATGGAAAAGTA+TGG | - | chr3.1:79657251-79657270 | MS.gene48403:intron | 20.0% |
| !! | CAAAGTTTGAATTATGTTAA+TGG | - | chr3.1:79657241-79657260 | MS.gene48403:intron | 20.0% |
| !!! | AAAATGAGCTATTCAATTTT+CGG | - | chr3.1:79657287-79657306 | MS.gene48403:intron | 20.0% |
| ! | AACTGTTTATCTATAAGAGA+CGG | + | chr3.1:79656681-79656700 | None:intergenic | 25.0% |
| ! | AATGAACATTACTTTCAATC+GGG | - | chr3.1:79658533-79658552 | MS.gene48403:CDS | 25.0% |
| ! | AGTACACAATTAACTCTATT+AGG | + | chr3.1:79657616-79657635 | None:intergenic | 25.0% |
| ! | CAATGAACATTACTTTCAAT+CGG | - | chr3.1:79658532-79658551 | MS.gene48403:CDS | 25.0% |
| ! | GATTCTATTATTGAAGGTTT+GGG | - | chr3.1:79656851-79656870 | MS.gene48403:intron | 25.0% |
| ! | TTATACAAACATGACATTAG+AGG | - | chr3.1:79656699-79656718 | MS.gene48403:CDS | 25.0% |
| ! | TTTAGTGTAATTACAAGTGT+CGG | - | chr3.1:79657412-79657431 | MS.gene48403:CDS | 25.0% |
| ! | TTTCAAATTATTAGCTGTGT+CGG | + | chr3.1:79657381-79657400 | None:intergenic | 25.0% |
| !! | TTAATGGAAAAGTATGGATT+TGG | - | chr3.1:79657257-79657276 | MS.gene48403:intron | 25.0% |
| !!! | ATAGGTATCTTACTTTTTAC+TGG | - | chr3.1:79657895-79657914 | MS.gene48403:intron | 25.0% |
| !!! | TAACATCATCGTTATTTTAC+CGG | - | chr3.1:79657653-79657672 | MS.gene48403:intron | 25.0% |
| !!! | TCATTAAAAATGGTTGCTTT+TGG | - | chr3.1:79658429-79658448 | MS.gene48403:intron | 25.0% |
| AACTTGATCATTTCTACTTC+TGG | + | chr3.1:79657002-79657021 | None:intergenic | 30.0% | |
| AAGAATACAAAAGGCTTTAC+CGG | - | chr3.1:79658557-79658576 | MS.gene48403:CDS | 30.0% | |
| ATATTCTGAACTATGAAGCA+CGG | - | chr3.1:79657314-79657333 | MS.gene48403:intron | 30.0% | |
| GAGTTAATTGTGTACTTTAG+AGG | - | chr3.1:79657620-79657639 | MS.gene48403:intron | 30.0% | |
| GATAGGGATTCTATTATTGA+AGG | - | chr3.1:79656845-79656864 | MS.gene48403:intron | 30.0% | |
| GGATTCTATTATTGAAGGTT+TGG | - | chr3.1:79656850-79656869 | MS.gene48403:intron | 30.0% | |
| GGTAAAATAACGATGATGTT+AGG | + | chr3.1:79657654-79657673 | None:intergenic | 30.0% | |
| TTGAAATTGATCCATGTAGT+TGG | - | chr3.1:79657919-79657938 | MS.gene48403:intron | 30.0% | |
| ! | AGGATGAATTTTTGTCCTTT+AGG | - | chr3.1:79657789-79657808 | MS.gene48403:intron | 30.0% |
| ! | GACAGTGTTAGAACTATTTT+GGG | - | chr3.1:79658483-79658502 | MS.gene48403:intron | 30.0% |
| ! | GATGAATTTTTGTCCTTTAG+GGG | - | chr3.1:79657791-79657810 | MS.gene48403:intron | 30.0% |
| ! | GGATGAATTTTTGTCCTTTA+GGG | - | chr3.1:79657790-79657809 | MS.gene48403:intron | 30.0% |
| ! | TGACAGTGTTAGAACTATTT+TGG | - | chr3.1:79658482-79658501 | MS.gene48403:intron | 30.0% |
| !! | CATATTGAATAGTATCGATG+CGG | - | chr3.1:79658018-79658037 | MS.gene48403:intron | 30.0% |
| !! | TTGTTACTGATTTACGACTT+TGG | - | chr3.1:79657020-79657039 | MS.gene48403:CDS | 30.0% |
| !!! | GAATGTTCACGTTTTTTTCT+TGG | - | chr3.1:79657971-79657990 | MS.gene48403:intron | 30.0% |
| AAATCACGATTGTAAGCATG+TGG | + | chr3.1:79658298-79658317 | None:intergenic | 35.0% | |
| AACCCAAAGAAGCTAAACTT+TGG | - | chr3.1:79656603-79656622 | MS.gene48403:CDS | 35.0% | |
| AAGCAAGCGAATGAATAAAC+CGG | + | chr3.1:79657675-79657694 | None:intergenic | 35.0% | |
| ACCCAAAGAAGCTAAACTTT+GGG | - | chr3.1:79656604-79656623 | MS.gene48403:CDS | 35.0% | |
| ATTGAAAAGAGAATCGAGAG+TGG | - | chr3.1:79656878-79656897 | MS.gene48403:intron | 35.0% | |
| CAATCGGGAAAGAATACAAA+AGG | - | chr3.1:79658548-79658567 | MS.gene48403:CDS | 35.0% | |
| GAAAAAGAATCCTGATCCAA+TGG | - | chr3.1:79658201-79658220 | MS.gene48403:CDS | 35.0% | |
| GAAGTATGTAACTTCTTAGC+AGG | + | chr3.1:79656980-79656999 | None:intergenic | 35.0% | |
| GATGTCATGAATCGATCAAT+GGG | + | chr3.1:79657843-79657862 | None:intergenic | 35.0% | |
| GTAAGATACCTATTCCTCAT+TGG | + | chr3.1:79657888-79657907 | None:intergenic | 35.0% | |
| GTTTGATTGATTGTAGAGCT+AGG | - | chr3.1:79657769-79657788 | MS.gene48403:intron | 35.0% | |
| TCAACTTTCATTGCTTAAGC+TGG | - | chr3.1:79657087-79657106 | MS.gene48403:CDS | 35.0% | |
| TTATTCATTCGCTTGCTTGT+GGG | - | chr3.1:79657677-79657696 | MS.gene48403:intron | 35.0% | |
| TTTATTCATTCGCTTGCTTG+TGG | - | chr3.1:79657676-79657695 | MS.gene48403:intron | 35.0% | |
| ! | CATTGATCGATTCATGACAT+CGG | - | chr3.1:79657842-79657861 | MS.gene48403:intron | 35.0% |
| ! | CGCTGATTATCTTGTTAAGA+AGG | - | chr3.1:79658605-79658624 | MS.gene48403:CDS | 35.0% |
| !! | AACTATTTTGGGAATGCTTG+AGG | - | chr3.1:79658494-79658513 | MS.gene48403:CDS | 35.0% |
| !! | AGAAGGTGCTGTAATAAAAC+AGG | + | chr3.1:79657169-79657188 | None:intergenic | 35.0% |
| ACTCTTCTCACATTGTGCAA+AGG | - | chr3.1:79658268-79658287 | MS.gene48403:CDS | 40.0% | |
| ATTCATGACATCGGATGCAT+TGG | - | chr3.1:79657851-79657870 | MS.gene48403:intron | 40.0% | |
| ATTCTTCACCAAGTCGAGAA+AGG | + | chr3.1:79658102-79658121 | None:intergenic | 40.0% | |
| CCCAAAGAAGCTAAACTTTG+GGG | - | chr3.1:79656605-79656624 | MS.gene48403:CDS | 40.0% | |
| CGATGTCATGAATCGATCAA+TGG | + | chr3.1:79657844-79657863 | None:intergenic | 40.0% | |
| CTGTTGAAACAGAATCGCTT+GGG | + | chr3.1:79658162-79658181 | None:intergenic | 40.0% | |
| CTTCAACATAAGCAAGCAGA+AGG | + | chr3.1:79657186-79657205 | None:intergenic | 40.0% | |
| GCTTCAGAATCTATGAAGCA+CGG | + | chr3.1:79657501-79657520 | None:intergenic | 40.0% | |
| GTTCTAACACTGTCAAACAC+TGG | + | chr3.1:79658477-79658496 | None:intergenic | 40.0% | |
| TAATTGGAGAGCTGATAGAG+AGG | - | chr3.1:79656907-79656926 | MS.gene48403:intron | 40.0% | |
| TATTCATTCGCTTGCTTGTG+GGG | - | chr3.1:79657678-79657697 | MS.gene48403:intron | 40.0% | |
| TCGAGAGTGGTGAGTTTAAT+TGG | - | chr3.1:79656891-79656910 | MS.gene48403:intron | 40.0% | |
| TCTGCTTGCTTATGTTGAAG+AGG | - | chr3.1:79657186-79657205 | MS.gene48403:CDS | 40.0% | |
| TGAACTATGAAGCACGGATA+CGG | - | chr3.1:79657320-79657339 | MS.gene48403:intron | 40.0% | |
| TGTTGAAACAGAATCGCTTG+GGG | + | chr3.1:79658161-79658180 | None:intergenic | 40.0% | |
| TTACCACGAACAAGTTCCAT+TGG | + | chr3.1:79658220-79658239 | None:intergenic | 40.0% | |
| TTACTGCTCCAATGAGGAAT+AGG | - | chr3.1:79657877-79657896 | MS.gene48403:intron | 40.0% | |
| TTCATGACATCGGATGCATT+GGG | - | chr3.1:79657852-79657871 | MS.gene48403:intron | 40.0% | |
| TTTAACATTAGTCCCATGCC+AGG | + | chr3.1:79657946-79657965 | None:intergenic | 40.0% | |
| TTTGATCAGTGCGAGTGATA+GGG | - | chr3.1:79656829-79656848 | MS.gene48403:intron | 40.0% | |
| ! | AAAGAAGCTAAACTTTGGGG+TGG | - | chr3.1:79656608-79656627 | MS.gene48403:CDS | 40.0% |
| ! | ACCCCAAAGTTTAGCTTCTT+TGG | + | chr3.1:79656609-79656628 | None:intergenic | 40.0% |
| ! | CCCCAAAGTTTAGCTTCTTT+GGG | + | chr3.1:79656608-79656627 | None:intergenic | 40.0% |
| ! | GGATCAGGATTCTTTTTCTG+AGG | + | chr3.1:79658199-79658218 | None:intergenic | 40.0% |
| ! | TGCTTACAATCGTGATTTGC+AGG | - | chr3.1:79658300-79658319 | MS.gene48403:CDS | 40.0% |
| !! | AAGCTGGCTTTGAACAATCA+GGG | - | chr3.1:79657103-79657122 | MS.gene48403:CDS | 40.0% |
| !! | AATCAGGGTCTTATTGTTCC+TGG | - | chr3.1:79657118-79657137 | MS.gene48403:CDS | 40.0% |
| !! | GCTGCTCTTACTGATTTGAT+TGG | - | chr3.1:79656950-79656969 | MS.gene48403:CDS | 40.0% |
| !! | TAAGCTGGCTTTGAACAATC+AGG | - | chr3.1:79657102-79657121 | MS.gene48403:CDS | 40.0% |
| !! | TTCTCGACTTGGTGAAGAAT+GGG | - | chr3.1:79658102-79658121 | MS.gene48403:CDS | 40.0% |
| !! | TTTCTCGACTTGGTGAAGAA+TGG | - | chr3.1:79658101-79658120 | MS.gene48403:CDS | 40.0% |
| !!! | GGTTGCTTTTGGTTGTAAGT+AGG | - | chr3.1:79658440-79658459 | MS.gene48403:intron | 40.0% |
| AACTGCAGAGAAAACACGCA+AGG | + | chr3.1:79658364-79658383 | None:intergenic | 45.0% | |
| ATACAAAAGGCTTTACCGGC+TGG | - | chr3.1:79658561-79658580 | MS.gene48403:CDS | 45.0% | |
| ATCACGCTCAATCTGCAAGA+GGG | + | chr3.1:79657742-79657761 | None:intergenic | 45.0% | |
| CCAAGCGATTCTGTTTCAAC+AGG | - | chr3.1:79658160-79658179 | MS.gene48403:CDS | 45.0% | |
| CCTGTTGAAACAGAATCGCT+TGG | + | chr3.1:79658163-79658182 | None:intergenic | 45.0% | |
| CGAACAAGTTCCATTGGATC+AGG | + | chr3.1:79658214-79658233 | None:intergenic | 45.0% | |
| CGCTGCAAATGAGTATAACC+AGG | + | chr3.1:79657139-79657158 | None:intergenic | 45.0% | |
| GAAACTCCAGCAGGAAATCT+CGG | + | chr3.1:79658051-79658070 | None:intergenic | 45.0% | |
| GGATTCAGTGAATCGTTCGA+CGG | + | chr3.1:79656660-79656679 | None:intergenic | 45.0% | |
| GTAAGTCTGCCAGAGTCATA+GGG | - | chr3.1:79658236-79658255 | MS.gene48403:CDS | 45.0% | |
| GTTGCATCAAGATAACCAGC+CGG | + | chr3.1:79658579-79658598 | None:intergenic | 45.0% | |
| GTTTGATCAGTGCGAGTGAT+AGG | - | chr3.1:79656828-79656847 | MS.gene48403:intron | 45.0% | |
| TAACAGAGAGAAACTCCAGC+AGG | + | chr3.1:79658060-79658079 | None:intergenic | 45.0% | |
| TAAGTCTGCCAGAGTCATAG+GGG | - | chr3.1:79658237-79658256 | MS.gene48403:CDS | 45.0% | |
| TGGGATTTACTGCTCCAATG+AGG | - | chr3.1:79657871-79657890 | MS.gene48403:intron | 45.0% | |
| TTGATCCATGTAGTTGGACC+TGG | - | chr3.1:79657925-79657944 | MS.gene48403:intron | 45.0% | |
| ! | GATCCAATGGAACTTGTTCG+TGG | - | chr3.1:79658214-79658233 | MS.gene48403:CDS | 45.0% |
| ! | TGGTGAAGAATGGGTACTGT+GGG | - | chr3.1:79658111-79658130 | MS.gene48403:CDS | 45.0% |
| ! | TTGGTGAAGAATGGGTACTG+TGG | - | chr3.1:79658110-79658129 | MS.gene48403:CDS | 45.0% |
| AAGTCTGCCAGAGTCATAGG+GGG | - | chr3.1:79658238-79658257 | MS.gene48403:CDS | 50.0% | |
| ACCTACCTGTTTAGCGAGCA+TGG | + | chr3.1:79656742-79656761 | None:intergenic | 50.0% | |
| ATGAAGCACGGATACGGACA+CGG | - | chr3.1:79657326-79657345 | MS.gene48403:intron | 50.0% | |
| CATCACGCTCAATCTGCAAG+AGG | + | chr3.1:79657743-79657762 | None:intergenic | 50.0% | |
| CATGTAGTTGGACCTGGCAT+GGG | - | chr3.1:79657931-79657950 | MS.gene48403:intron | 50.0% | |
| CTGTGGGCTTCAGAGGAATT+TGG | - | chr3.1:79658127-79658146 | MS.gene48403:CDS | 50.0% | |
| GGTAAGTCTGCCAGAGTCAT+AGG | - | chr3.1:79658235-79658254 | MS.gene48403:CDS | 50.0% | |
| TATGAAGCACGGACACTCCT+CGG | + | chr3.1:79657490-79657509 | None:intergenic | 50.0% | |
| TCACGCTCAATCTGCAAGAG+GGG | + | chr3.1:79657741-79657760 | None:intergenic | 50.0% | |
| TCCATGCTCGCTAAACAGGT+AGG | - | chr3.1:79656738-79656757 | MS.gene48403:CDS | 50.0% | |
| TCCTCGGATTAAGCGTGTCT+CGG | + | chr3.1:79657474-79657493 | None:intergenic | 50.0% | |
| TGCATCCATGCTCGCTAAAC+AGG | - | chr3.1:79656734-79656753 | MS.gene48403:CDS | 50.0% | |
| TGGGGTGGAAGATTCGAAGA+AGG | - | chr3.1:79656623-79656642 | MS.gene48403:CDS | 50.0% | |
| TTCTGACCGAGATTTCCTGC+TGG | - | chr3.1:79658042-79658061 | MS.gene48403:CDS | 50.0% | |
| TTGCAGATTGAGCGTGATGC+TGG | - | chr3.1:79657744-79657763 | MS.gene48403:intron | 50.0% | |
| ! | AGAAAGGTGCACTGCTGTGA+TGG | + | chr3.1:79658086-79658105 | None:intergenic | 50.0% |
| ! | GATTAAGCGTGTCTCGGTGT+CGG | + | chr3.1:79657468-79657487 | None:intergenic | 50.0% |
| !! | TACAAGTGTCGGTGTCGTGT+CGG | - | chr3.1:79657423-79657442 | MS.gene48403:CDS | 50.0% |
| ACCGAGACACGCTTAATCCG+AGG | - | chr3.1:79657470-79657489 | MS.gene48403:CDS | 55.0% | |
| AGTGAATCGTTCGACGGCGT+CGG | + | chr3.1:79656654-79656673 | None:intergenic | 55.0% | |
| CCATGCCAGGTCCAACTACA+TGG | + | chr3.1:79657933-79657952 | None:intergenic | 55.0% | |
| CCATGTAGTTGGACCTGGCA+TGG | - | chr3.1:79657930-79657949 | MS.gene48403:intron | 55.0% | |
| GACCAAACCCCCTATGACTC+TGG | + | chr3.1:79658248-79658267 | None:intergenic | 55.0% | |
| GCAGTGCACCTTTCTCGACT+TGG | - | chr3.1:79658091-79658110 | MS.gene48403:CDS | 55.0% | |
| TGCCAGAGTCATAGGGGGTT+TGG | - | chr3.1:79658243-79658262 | MS.gene48403:CDS | 55.0% | |
| ! | ATGGGTACTGTGGGCTTCAG+AGG | - | chr3.1:79658120-79658139 | MS.gene48403:CDS | 55.0% |
| ! | TCCTTTAGGGGCTTGTGCGT+TGG | - | chr3.1:79657803-79657822 | MS.gene48403:intron | 55.0% |
| !! | ACAAGTGTCGGTGTCGTGTC+GGG | - | chr3.1:79657424-79657443 | MS.gene48403:CDS | 55.0% |
| !! | CTTGTGCGTTGGCTGGTACA+GGG | - | chr3.1:79657814-79657833 | MS.gene48403:intron | 55.0% |
| ACGGATACGGACACGGACAC+CGG | - | chr3.1:79657333-79657352 | MS.gene48403:intron | 60.0% | |
| GCCAACGCACAAGCCCCTAA+AGG | + | chr3.1:79657807-79657826 | None:intergenic | 60.0% | |
| GTCAGTGTCCGTGTCGTGTC+CGG | + | chr3.1:79657355-79657374 | None:intergenic | 60.0% | |
| ! | TTAGGGGCTTGTGCGTTGGC+TGG | - | chr3.1:79657807-79657826 | MS.gene48403:intron | 60.0% |
| !! | CAAGTGTCGGTGTCGTGTCG+GGG | - | chr3.1:79657425-79657444 | MS.gene48403:CDS | 60.0% |
| !! | GCTTGTGCGTTGGCTGGTAC+AGG | - | chr3.1:79657813-79657832 | MS.gene48403:intron | 60.0% |
| CACGGACACCGGACACGACA+CGG | - | chr3.1:79657344-79657363 | MS.gene48403:intron | 65.0% | |
| !! | TGTCGGTGTCGTGTCGGGGT+CGG | - | chr3.1:79657429-79657448 | MS.gene48403:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 79656594 | 79658651 | 79656594 | ID=MS.gene48403 |
| chr3.1 | mRNA | 79656594 | 79658651 | 79656594 | ID=MS.gene48403.t1;Parent=MS.gene48403 |
| chr3.1 | exon | 79658490 | 79658651 | 79658490 | ID=MS.gene48403.t1.exon1;Parent=MS.gene48403.t1 |
| chr3.1 | CDS | 79658490 | 79658651 | 79658490 | ID=cds.MS.gene48403.t1;Parent=MS.gene48403.t1 |
| chr3.1 | exon | 79658038 | 79658418 | 79658038 | ID=MS.gene48403.t1.exon2;Parent=MS.gene48403.t1 |
| chr3.1 | CDS | 79658038 | 79658418 | 79658038 | ID=cds.MS.gene48403.t1;Parent=MS.gene48403.t1 |
| chr3.1 | exon | 79657347 | 79657495 | 79657347 | ID=MS.gene48403.t1.exon3;Parent=MS.gene48403.t1 |
| chr3.1 | CDS | 79657347 | 79657495 | 79657347 | ID=cds.MS.gene48403.t1;Parent=MS.gene48403.t1 |
| chr3.1 | exon | 79656924 | 79657215 | 79656924 | ID=MS.gene48403.t1.exon4;Parent=MS.gene48403.t1 |
| chr3.1 | CDS | 79656924 | 79657215 | 79656924 | ID=cds.MS.gene48403.t1;Parent=MS.gene48403.t1 |
| chr3.1 | exon | 79656594 | 79656783 | 79656594 | ID=MS.gene48403.t1.exon5;Parent=MS.gene48403.t1 |
| chr3.1 | CDS | 79656594 | 79656783 | 79656594 | ID=cds.MS.gene48403.t1;Parent=MS.gene48403.t1 |
| Gene Sequence |
| Protein sequence |
