Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48421.t1 | XP_003602918.2 | 96.7 | 1009 | 27 | 4 | 1 | 1007 | 1 | 1005 | 0.00E+00 | 1940.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48421.t1 | Q8L7S0 | 48.7 | 661 | 296 | 13 | 169 | 815 | 186 | 817 | 3.7e-156 | 553.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48421.t1 | G7J544 | 96.7 | 1009 | 27 | 4 | 1 | 1007 | 1 | 1005 | 0.0e+00 | 1940.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052161 | MS.gene48421 | 0.99484 | 1.15E-210 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48421.t1 | MTR_3g100390 | 96.729 | 1009 | 27 | 4 | 1 | 1007 | 1 | 1005 | 0.0 | 1994 |
| MS.gene48421.t1 | MTR_3g100390 | 96.333 | 1009 | 28 | 5 | 1 | 1007 | 1 | 1002 | 0.0 | 1980 |
| MS.gene48421.t1 | MTR_5g066230 | 62.400 | 375 | 126 | 5 | 361 | 732 | 147 | 509 | 3.18e-151 | 471 |
| MS.gene48421.t1 | MTR_5g066240 | 60.049 | 408 | 146 | 4 | 353 | 754 | 91 | 487 | 1.31e-145 | 450 |
| MS.gene48421.t1 | MTR_2g009580 | 53.882 | 425 | 188 | 2 | 223 | 640 | 215 | 638 | 2.04e-133 | 426 |
| MS.gene48421.t1 | MTR_2g009580 | 49.891 | 459 | 188 | 3 | 223 | 640 | 215 | 672 | 5.36e-127 | 410 |
| MS.gene48421.t1 | MTR_5g066530 | 56.190 | 210 | 78 | 4 | 525 | 732 | 1 | 198 | 5.93e-62 | 223 |
| MS.gene48421.t1 | MTR_8g064470 | 31.737 | 334 | 181 | 12 | 374 | 686 | 296 | 603 | 4.95e-38 | 152 |
| MS.gene48421.t1 | MTR_8g064470 | 34.857 | 175 | 97 | 7 | 387 | 558 | 297 | 457 | 8.20e-22 | 100 |
| MS.gene48421.t1 | MTR_8g064470 | 34.857 | 175 | 97 | 7 | 387 | 558 | 297 | 457 | 9.30e-22 | 100 |
| MS.gene48421.t1 | MTR_4g119970 | 29.858 | 211 | 113 | 8 | 398 | 602 | 288 | 469 | 1.10e-16 | 84.7 |
| MS.gene48421.t1 | MTR_2g436660 | 28.910 | 211 | 115 | 8 | 398 | 602 | 261 | 442 | 6.04e-16 | 82.4 |
| MS.gene48421.t1 | MTR_3g075090 | 25.728 | 206 | 127 | 5 | 414 | 618 | 91 | 271 | 6.75e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48421.t1 | AT1G09730 | 50.400 | 625 | 267 | 13 | 220 | 815 | 207 | 817 | 5.64e-173 | 530 |
| MS.gene48421.t1 | AT1G09730 | 51.933 | 595 | 258 | 12 | 235 | 815 | 269 | 849 | 4.62e-172 | 528 |
| MS.gene48421.t1 | AT4G33620 | 44.592 | 453 | 232 | 7 | 200 | 641 | 100 | 544 | 1.03e-109 | 358 |
| MS.gene48421.t1 | AT1G10570 | 33.088 | 272 | 145 | 11 | 386 | 640 | 184 | 435 | 1.94e-32 | 132 |
| MS.gene48421.t1 | AT1G10570 | 33.457 | 269 | 142 | 11 | 386 | 637 | 315 | 563 | 6.75e-32 | 132 |
| MS.gene48421.t1 | AT1G10570 | 33.457 | 269 | 142 | 11 | 386 | 637 | 314 | 562 | 7.19e-32 | 132 |
| MS.gene48421.t1 | AT1G60220 | 30.682 | 264 | 154 | 9 | 386 | 637 | 330 | 576 | 3.67e-30 | 127 |
| MS.gene48421.t1 | AT4G15880 | 32.338 | 201 | 100 | 8 | 408 | 602 | 298 | 468 | 7.12e-21 | 97.8 |
| MS.gene48421.t1 | AT3G06910 | 30.000 | 200 | 105 | 7 | 408 | 601 | 310 | 480 | 6.09e-17 | 85.5 |
| MS.gene48421.t1 | AT4G00690 | 26.415 | 212 | 119 | 8 | 398 | 602 | 139 | 320 | 1.02e-15 | 80.1 |
| MS.gene48421.t1 | AT3G48480 | 27.941 | 204 | 110 | 9 | 422 | 618 | 106 | 279 | 4.88e-12 | 68.6 |
| MS.gene48421.t1 | AT4G15880 | 32.558 | 129 | 56 | 6 | 408 | 530 | 298 | 401 | 1.54e-11 | 68.2 |
Find 223 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTGAACAATTTATGTATT+TGG | 0.160728 | 3.1:+79826058 | MS.gene48421:CDS |
| CTTTCGAAAGCTGGCTGATT+TGG | 0.211316 | 3.1:+79820980 | MS.gene48421:CDS |
| CATTTCAACGTGTTCGTAAA+TGG | 0.213736 | 3.1:+79821039 | MS.gene48421:CDS |
| ATGTGAAATACTTGGCTATT+TGG | 0.217172 | 3.1:+79815542 | MS.gene48421:CDS |
| AAGAAAACTACTTACAAAAT+TGG | 0.231631 | 3.1:-79824825 | None:intergenic |
| GCCTCTTGCAGAGAGATTTC+TGG | 0.233621 | 3.1:-79826176 | None:intergenic |
| TTGCATATGGATTCTATAAA+AGG | 0.237496 | 3.1:+79821366 | MS.gene48421:CDS |
| ATGTGATCTGTTTATGTATC+AGG | 0.249500 | 3.1:-79815513 | None:intergenic |
| ATATCAGAAGCAGCACTTAT+TGG | 0.263492 | 3.1:-79813834 | None:intergenic |
| GATGGTCAGATAGATATTTC+TGG | 0.287289 | 3.1:+79826527 | MS.gene48421:CDS |
| TTATCCATATATCTACAAAT+TGG | 0.288050 | 3.1:-79826822 | None:intergenic |
| TTTGGCAACTCACCAGCTTC+AGG | 0.297977 | 3.1:+79812078 | MS.gene48421:CDS |
| CTTCCAAGGGATTGTGGAAA+TGG | 0.319364 | 3.1:+79826140 | MS.gene48421:CDS |
| CAGGTGATACAGAAGATATT+GGG | 0.329863 | 3.1:+79826222 | MS.gene48421:CDS |
| TCAGGTGATACAGAAGATAT+TGG | 0.331413 | 3.1:+79826221 | MS.gene48421:CDS |
| TTCTGGTAACCATCACAATT+AGG | 0.336621 | 3.1:-79826602 | None:intergenic |
| GACTCCATTATGAGGTTTGA+TGG | 0.339663 | 3.1:+79826410 | MS.gene48421:CDS |
| TGACACCAACCGAGTTGATC+TGG | 0.352010 | 3.1:-79813372 | None:intergenic |
| GAAAACTTGGTTACTTTGAA+TGG | 0.356668 | 3.1:-79824803 | None:intergenic |
| TCTTGGTAAATTATATAATC+AGG | 0.358542 | 3.1:-79814974 | None:intergenic |
| TTGAGCATCTTGAGTTCAAC+AGG | 0.358785 | 3.1:+79825535 | MS.gene48421:CDS |
| GAAATTATGGCAGTCTTCAT+TGG | 0.360814 | 3.1:+79821181 | MS.gene48421:intron |
| ACAGTGATTCTCCTGACTAA+TGG | 0.364707 | 3.1:-79813545 | None:intergenic |
| TTTGCATCCGAAATACTAGA+TGG | 0.373644 | 3.1:-79821011 | None:intergenic |
| GCTTGTTCCTCAGAAATATC+AGG | 0.374889 | 3.1:-79826740 | None:intergenic |
| AAAAGTAAATTTATTTGAAA+AGG | 0.380449 | 3.1:+79821067 | MS.gene48421:CDS |
| ACAGCATCAGCATCCCCTTT+AGG | 0.381092 | 3.1:-79820471 | None:intergenic |
| ACGAGCCAGATTGATCCTTC+AGG | 0.381822 | 3.1:+79813643 | MS.gene48421:CDS |
| TCTCGAAGTCTTCGATTTCA+AGG | 0.386144 | 3.1:+79811012 | MS.gene48421:CDS |
| GAGAGTGAATATCTCCATTC+TGG | 0.388925 | 3.1:-79826619 | None:intergenic |
| GCCCCGTGTAATAATTATCT+TGG | 0.389994 | 3.1:-79814991 | None:intergenic |
| CTGAATACTGCCATGAAGAT+TGG | 0.392865 | 3.1:+79826249 | MS.gene48421:CDS |
| CAATGTTTCAACTGCATGTA+TGG | 0.396699 | 3.1:+79815048 | MS.gene48421:CDS |
| ACTTACAAAATTGGAAAACT+TGG | 0.397236 | 3.1:-79824816 | None:intergenic |
| TTGAATGGATTGAAAGTAAG+AGG | 0.400476 | 3.1:-79824788 | None:intergenic |
| ATGAAGTCATCTATCCTAAA+GGG | 0.401879 | 3.1:+79820457 | MS.gene48421:CDS |
| GATATCAAGGAATGCAAATC+AGG | 0.403856 | 3.1:+79815251 | MS.gene48421:CDS |
| GGTGCCCTGCATATTGCATA+TGG | 0.405120 | 3.1:+79821353 | MS.gene48421:CDS |
| GGAAGATGACGAAACTAAAT+CGG | 0.407018 | 3.1:+79819854 | MS.gene48421:CDS |
| GATCATGCAGGCGAAACTTC+AGG | 0.408863 | 3.1:+79815276 | MS.gene48421:CDS |
| ACGAGGCCTTTGATCTTGAA+TGG | 0.413685 | 3.1:+79815074 | MS.gene48421:CDS |
| TTCTGCCTCACAAGATGCTA+TGG | 0.414044 | 3.1:-79826279 | None:intergenic |
| ATAATTTCAGTTTCACTGAA+TGG | 0.414641 | 3.1:+79813968 | MS.gene48421:intron |
| CTATGACCGACCAGAGAATA+GGG | 0.419780 | 3.1:+79813591 | MS.gene48421:CDS |
| CGAGGCCTTTGATCTTGAAT+GGG | 0.420587 | 3.1:+79815075 | MS.gene48421:CDS |
| GAAAATATTGAGAATGGAAC+TGG | 0.420627 | 3.1:+79825510 | MS.gene48421:CDS |
| ATAGATATTTCTGGTTCTGC+TGG | 0.426970 | 3.1:+79826347 | MS.gene48421:CDS |
| GCGTCAAAACCTTCCCATGC+TGG | 0.429353 | 3.1:+79825558 | MS.gene48421:CDS |
| TAATAGGAAGACACAGATCT+TGG | 0.430244 | 3.1:+79826038 | MS.gene48421:intron |
| GGATCAATCTGGCTCGTCTC+AGG | 0.430351 | 3.1:-79813637 | None:intergenic |
| AAAGTGAAGAATTCTGAGTT+AGG | 0.430539 | 3.1:+79813502 | MS.gene48421:CDS |
| TTTATGTATCAGGGACCAAT+TGG | 0.435267 | 3.1:-79815503 | None:intergenic |
| CACATCAACACAGGGAATAG+TGG | 0.436889 | 3.1:-79813404 | None:intergenic |
| TGGGCTCATTCCAATCTTCA+TGG | 0.438190 | 3.1:-79826259 | None:intergenic |
| TCAATCAAATTCCATTAGTC+AGG | 0.442248 | 3.1:+79813534 | MS.gene48421:CDS |
| TTCTAATATACCATTGGAGC+AGG | 0.443482 | 3.1:-79821410 | None:intergenic |
| ACTATGACCGACCAGAGAAT+AGG | 0.445383 | 3.1:+79813590 | MS.gene48421:CDS |
| TTGCAGTTGTTGATTCCAAT+TGG | 0.445416 | 3.1:+79815488 | MS.gene48421:CDS |
| AGATATTCACTCTCCCTGTC+TGG | 0.449003 | 3.1:+79826628 | MS.gene48421:CDS |
| TTTCTCAAGACTCCATTATG+AGG | 0.454553 | 3.1:+79826402 | MS.gene48421:CDS |
| ATAGATATTTCTGGTTCTGC+TGG | 0.455371 | 3.1:+79826536 | MS.gene48421:CDS |
| GTAACCATCAAACCTCATAA+TGG | 0.457479 | 3.1:-79826414 | None:intergenic |
| GATGAAGTCATCTATCCTAA+AGG | 0.462397 | 3.1:+79820456 | MS.gene48421:CDS |
| GTTTGACTTCCACCTGAAGC+TGG | 0.465356 | 3.1:-79812090 | None:intergenic |
| ATAGAAATGACTCTATTGTC+TGG | 0.467501 | 3.1:+79825588 | MS.gene48421:CDS |
| CCACAATCCCTTGGAAGGTA+AGG | 0.468475 | 3.1:-79826134 | None:intergenic |
| CGTCAAAACCTTCCCATGCT+GGG | 0.468834 | 3.1:+79825559 | MS.gene48421:CDS |
| CGCTTGAGATAAGCTTCAGC+AGG | 0.471468 | 3.1:-79825393 | None:intergenic |
| TTTCCAACACCCTCGGTTGT+GGG | 0.476200 | 3.1:+79826377 | MS.gene48421:CDS |
| GTCCCATTTCCACAATCCCT+TGG | 0.476755 | 3.1:-79826143 | None:intergenic |
| AGAATCCATATGCAATATGC+AGG | 0.477774 | 3.1:-79821358 | None:intergenic |
| CCCGGGTTGTTAAAAGATTG+AGG | 0.480157 | 3.1:-79825627 | None:intergenic |
| GTTGTTCCTGCTGTAGTACC+TGG | 0.482047 | 3.1:-79825675 | None:intergenic |
| TTCACTGAATGGTTGTGGAT+TGG | 0.482378 | 3.1:+79813979 | MS.gene48421:CDS |
| CCTTACCTTCCAAGGGATTG+TGG | 0.482777 | 3.1:+79826134 | MS.gene48421:CDS |
| TACATCGAAAATATTGAGAA+TGG | 0.485387 | 3.1:+79825504 | MS.gene48421:CDS |
| ATGATCGCTGGTCAAAAGAT+TGG | 0.486843 | 3.1:-79825710 | None:intergenic |
| CTTCAGCAAGGAAGAGCTCT+AGG | 0.487355 | 3.1:-79824763 | None:intergenic |
| AGAGTTGGACAACGCGCTTA+AGG | 0.489701 | 3.1:+79821332 | MS.gene48421:CDS |
| ACAGCTACTTGTGGGAAGAA+TGG | 0.490613 | 3.1:+79824115 | MS.gene48421:intron |
| GAATCGTACTTGAAGTTCAC+AGG | 0.492016 | 3.1:-79821104 | None:intergenic |
| AAAATGCTCTGTATTTGCTA+TGG | 0.492188 | 3.1:-79826324 | None:intergenic |
| TAAAGATTAATGTGATATCA+AGG | 0.492506 | 3.1:+79815238 | MS.gene48421:CDS |
| TCCAGCCACTTGTTGGAAGT+TGG | 0.493854 | 3.1:-79826090 | None:intergenic |
| TGATATTCACTCTCCCTGTC+AGG | 0.494966 | 3.1:+79826442 | MS.gene48421:CDS |
| AGGCGAGTTATGCCTCTAGA+AGG | 0.495087 | 3.1:+79826773 | MS.gene48421:CDS |
| GTATCACCTGAGGCACTACT+TGG | 0.495697 | 3.1:-79826209 | None:intergenic |
| TTCCAAGGGATTGTGGAAAT+GGG | 0.497011 | 3.1:+79826141 | MS.gene48421:CDS |
| GTGTAACTCCAGCCACTTGT+TGG | 0.498116 | 3.1:-79826097 | None:intergenic |
| TTCTATTCCCTCCCCAGCAT+GGG | 0.499439 | 3.1:-79825571 | None:intergenic |
| TGATATTGACAGCTACTTGT+GGG | 0.500465 | 3.1:+79824107 | MS.gene48421:intron |
| TTTCTCTTGTAGTATGGATG+TGG | 0.501527 | 3.1:+79819833 | MS.gene48421:intron |
| GTTCTTTGCCTTACCTTCCA+AGG | 0.501969 | 3.1:+79826126 | MS.gene48421:CDS |
| AATTGTGATGGTTACCAGAA+TGG | 0.502585 | 3.1:+79826605 | MS.gene48421:CDS |
| ACCAACTTCCAACAAGTGGC+TGG | 0.507932 | 3.1:+79826089 | MS.gene48421:CDS |
| TTCTTTGCCTTACCTTCCAA+GGG | 0.508158 | 3.1:+79826127 | MS.gene48421:CDS |
| CGAGCCAGATTGATCCTTCA+GGG | 0.508542 | 3.1:+79813644 | MS.gene48421:CDS |
| ATGGAAAGAAAGACATAAAG+AGG | 0.509158 | 3.1:+79824134 | MS.gene48421:CDS |
| GTGTCATTAACGAATGTGTC+TGG | 0.511432 | 3.1:-79820528 | None:intergenic |
| ATCTCTGAATGTGAAATACT+TGG | 0.513333 | 3.1:+79815534 | MS.gene48421:CDS |
| TAATGTGGTAGTTTCCTGAC+AGG | 0.516439 | 3.1:-79826456 | None:intergenic |
| CTGAATGGTTGTGGATTGGA+TGG | 0.516758 | 3.1:+79813983 | MS.gene48421:CDS |
| AGATCCTTGAGAACCATGCC+CGG | 0.517384 | 3.1:-79825645 | None:intergenic |
| TCATCACCAAGTAGTGCCTC+AGG | 0.517524 | 3.1:+79826203 | MS.gene48421:CDS |
| TCAGTTTCACTGAATGGTTG+TGG | 0.519776 | 3.1:+79813974 | MS.gene48421:intron |
| GGATAGATGACTTCATCAAA+AGG | 0.520124 | 3.1:-79820450 | None:intergenic |
| TTTGAGCCAGGTACTACAGC+AGG | 0.521418 | 3.1:+79825669 | MS.gene48421:CDS |
| TACCAAGATAATTATTACAC+GGG | 0.524247 | 3.1:+79814989 | MS.gene48421:CDS |
| CACTATTCCCTGTGTTGATG+TGG | 0.524260 | 3.1:+79813405 | MS.gene48421:CDS |
| GACGATGGTAAGATGATTGA+TGG | 0.524627 | 3.1:+79826710 | MS.gene48421:CDS |
| TCTCAAGAACCTAATTGTGA+TGG | 0.525869 | 3.1:+79826593 | MS.gene48421:CDS |
| GAGACCCTGAAGGATCAATC+TGG | 0.528731 | 3.1:-79813648 | None:intergenic |
| CGAGTTCAGATATCAGCCTC+TGG | 0.528803 | 3.1:-79825425 | None:intergenic |
| CAACCCGGGCATGGTTCTCA+AGG | 0.530042 | 3.1:+79825641 | MS.gene48421:CDS |
| CTAGTTGTATCCCTATTCTC+TGG | 0.532283 | 3.1:-79813601 | None:intergenic |
| CTGAGGAACAAGCTGCGAAA+CGG | 0.533603 | 3.1:+79826750 | MS.gene48421:CDS |
| CTAGGTAGTGCAGCAGAAAG+AGG | 0.536010 | 3.1:-79824745 | None:intergenic |
| TTTCTATTCCCTCCCCAGCA+TGG | 0.536676 | 3.1:-79825572 | None:intergenic |
| CATTTCCACAATCCCTTGGA+AGG | 0.537487 | 3.1:-79826139 | None:intergenic |
| ATTCCCTCCCCAGCATGGGA+AGG | 0.539807 | 3.1:-79825567 | None:intergenic |
| AATGATCTTACCGTGGGTGA+AGG | 0.541838 | 3.1:-79811101 | None:intergenic |
| ACATCAACACAGGGAATAGT+GGG | 0.544813 | 3.1:-79813403 | None:intergenic |
| ATTCCCTGTGTTGATGTGGT+TGG | 0.547692 | 3.1:+79813409 | MS.gene48421:CDS |
| AAAAGTTACACTACACTGGA+TGG | 0.548219 | 3.1:-79813670 | None:intergenic |
| ATTCCCACAACCGAGGGTGT+TGG | 0.548886 | 3.1:-79826380 | None:intergenic |
| TGGTAAGATGATTGATGGTA+CGG | 0.551064 | 3.1:+79826715 | MS.gene48421:CDS |
| GACACCAACCGAGTTGATCT+GGG | 0.551967 | 3.1:-79813371 | None:intergenic |
| CGTGAAATCTCATCCTCTGA+TGG | 0.553794 | 3.1:+79825465 | MS.gene48421:CDS |
| AGAAAGACATAAAGAGGCAT+CGG | 0.553805 | 3.1:+79824140 | MS.gene48421:CDS |
| AAACCCCTCGTTCGAAACAA+TGG | 0.554774 | 3.1:+79813462 | MS.gene48421:CDS |
| AAACAAGAAAATGTATTACA+AGG | 0.554857 | 3.1:+79812109 | MS.gene48421:CDS |
| TCTTCGCTTCTACCTTCTAG+AGG | 0.555994 | 3.1:-79826785 | None:intergenic |
| CTGATATTGACAGCTACTTG+TGG | 0.556622 | 3.1:+79824106 | MS.gene48421:intron |
| ATGATCTTACCGTGGGTGAA+GGG | 0.560701 | 3.1:-79811100 | None:intergenic |
| AAATGCTCTGTATTTGCTAT+GGG | 0.562539 | 3.1:-79826323 | None:intergenic |
| AAAACCTTCCCATGCTGGGG+AGG | 0.563359 | 3.1:+79825563 | MS.gene48421:CDS |
| TCTTCCATTGTTTCGAACGA+GGG | 0.563561 | 3.1:-79813466 | None:intergenic |
| TTGTTGGAAGTTGGTATCTG+TGG | 0.564914 | 3.1:-79826081 | None:intergenic |
| AGCGATAATCAGATGATCGC+TGG | 0.566868 | 3.1:-79825722 | None:intergenic |
| GCATATTTCAGATAAAGAGT+TGG | 0.567659 | 3.1:+79821317 | MS.gene48421:intron |
| GATCCTTGAGAACCATGCCC+GGG | 0.570927 | 3.1:-79825644 | None:intergenic |
| ATCTTCCATTGTTTCGAACG+AGG | 0.576520 | 3.1:-79813467 | None:intergenic |
| TCTGCCTCACAAGATGCTAT+GGG | 0.577729 | 3.1:-79826278 | None:intergenic |
| TGTGATCTGTTTATGTATCA+GGG | 0.577802 | 3.1:-79815512 | None:intergenic |
| ATCTATCTGACCATCGCAAG+CGG | 0.580669 | 3.1:-79826519 | None:intergenic |
| TACTGTGGGAGTTTCCAGAC+AGG | 0.580777 | 3.1:-79826642 | None:intergenic |
| AAACCTTCCCATGCTGGGGA+GGG | 0.581514 | 3.1:+79825564 | MS.gene48421:CDS |
| TTAATAGTCATATGTCATCC+TGG | 0.582928 | 3.1:+79821207 | MS.gene48421:CDS |
| AATTCCCCATTCAAGATCAA+AGG | 0.584989 | 3.1:-79815080 | None:intergenic |
| GAAGATGACGAAACTAAATC+GGG | 0.585369 | 3.1:+79819855 | MS.gene48421:CDS |
| AAAATAAAATACCGCATCAG+AGG | 0.588316 | 3.1:-79814032 | None:intergenic |
| CATATGTCATCCTGGTGAAG+TGG | 0.590235 | 3.1:+79821215 | MS.gene48421:CDS |
| TTGTATCCCTATTCTCTGGT+CGG | 0.592897 | 3.1:-79813597 | None:intergenic |
| ACCAGAAATCTCTCTGCAAG+AGG | 0.593473 | 3.1:+79826175 | MS.gene48421:CDS |
| CGCCTCTGACACCTCTGATG+CGG | 0.594770 | 3.1:+79814021 | MS.gene48421:CDS |
| ATTCCCACGACTGAGGATGT+TGG | 0.595833 | 3.1:-79826569 | None:intergenic |
| GCAAATCAGGTAGATCATGC+AGG | 0.596709 | 3.1:+79815264 | MS.gene48421:CDS |
| CAAGAAAACTCATATGATTG+TGG | 0.597824 | 3.1:+79824722 | MS.gene48421:CDS |
| GATGATGAGACCGCTTGCGA+TGG | 0.600955 | 3.1:+79826509 | MS.gene48421:CDS |
| ATGAGATTTCACGTGAACCA+TGG | 0.601955 | 3.1:-79825455 | None:intergenic |
| ACTGCCAACCACATCAACAC+AGG | 0.601967 | 3.1:-79813413 | None:intergenic |
| AGATACCAACTTCCAACAAG+TGG | 0.603863 | 3.1:+79826085 | MS.gene48421:CDS |
| TTGCCAACATCCTCAGTCGT+GGG | 0.608437 | 3.1:+79826566 | MS.gene48421:CDS |
| TTTGCCAACATCCTCAGTCG+TGG | 0.610051 | 3.1:+79826565 | MS.gene48421:CDS |
| TACCGCATCAGAGGTGTCAG+AGG | 0.613927 | 3.1:-79814023 | None:intergenic |
| TTACCAAGATAATTATTACA+CGG | 0.613969 | 3.1:+79814988 | MS.gene48421:CDS |
| GTCAAAACCTTCCCATGCTG+GGG | 0.614821 | 3.1:+79825560 | MS.gene48421:CDS |
| GAATCCATATGCAATATGCA+GGG | 0.617188 | 3.1:-79821357 | None:intergenic |
| TTAAAATTAACCACTTCACC+AGG | 0.618089 | 3.1:-79821225 | None:intergenic |
| CTTCCATTGTTTCGAACGAG+GGG | 0.618257 | 3.1:-79813465 | None:intergenic |
| TCCAGATGCCCAGATCAACT+CGG | 0.618613 | 3.1:+79813363 | MS.gene48421:intron |
| GGCAACTCACCAGCTTCAGG+TGG | 0.622778 | 3.1:+79812081 | MS.gene48421:CDS |
| ATAGCAGACAATACCGCAAG+GGG | 0.623428 | 3.1:-79824204 | None:intergenic |
| ATGAGGTTTGATGGTTACAA+TGG | 0.625470 | 3.1:+79826419 | MS.gene48421:CDS |
| GAGGAGGCAGCATGCGACGA+TGG | 0.628693 | 3.1:+79826695 | MS.gene48421:CDS |
| AGGAACAAGCTGCGAAACGG+AGG | 0.628909 | 3.1:+79826753 | MS.gene48421:CDS |
| GAGGCTGATATCTGAACTCG+TGG | 0.629107 | 3.1:+79825428 | MS.gene48421:CDS |
| TTGAGAAATTCCCACGACTG+AGG | 0.630357 | 3.1:-79826576 | None:intergenic |
| GATGCCCAGATCAACTCGGT+TGG | 0.630827 | 3.1:+79813367 | MS.gene48421:intron |
| TTCTGATGCAGTAGACGAGG+AGG | 0.634390 | 3.1:+79826679 | MS.gene48421:CDS |
| GAGGCCTTTGATCTTGAATG+GGG | 0.639721 | 3.1:+79815076 | MS.gene48421:CDS |
| AATCTCGATCCCTTCACCCA+CGG | 0.641124 | 3.1:+79811091 | MS.gene48421:CDS |
| TGAGAAATTCCCACAACCGA+GGG | 0.645223 | 3.1:-79826386 | None:intergenic |
| GATGACGAAACTAAATCGGG+TGG | 0.649914 | 3.1:+79819858 | MS.gene48421:CDS |
| TATAGCAGACAATACCGCAA+GGG | 0.650245 | 3.1:-79824205 | None:intergenic |
| TTGAGAAATTCCCACAACCG+AGG | 0.651002 | 3.1:-79826387 | None:intergenic |
| AAGTAAGAGGAGCTTCAGCA+AGG | 0.651363 | 3.1:-79824775 | None:intergenic |
| CTATGTGAGAAGGTTAACAT+TGG | 0.651579 | 3.1:-79815013 | None:intergenic |
| TGAAGTCATCTATCCTAAAG+GGG | 0.652761 | 3.1:+79820458 | MS.gene48421:CDS |
| AACTGCATGTATGGAGCACG+AGG | 0.653847 | 3.1:+79815057 | MS.gene48421:CDS |
| AGGTGATACAGAAGATATTG+GGG | 0.654215 | 3.1:+79826223 | MS.gene48421:CDS |
| GTACTTTCTTCAGAGTGGAA+CGG | 0.654333 | 3.1:+79815209 | MS.gene48421:intron |
| AACTTGATGCAATGTTACTG+TGG | 0.655923 | 3.1:-79826657 | None:intergenic |
| CTGCCAACCACATCAACACA+GGG | 0.657590 | 3.1:-79813412 | None:intergenic |
| TCTGAAGAATCAGATACAAG+AGG | 0.658211 | 3.1:+79820920 | MS.gene48421:CDS |
| GAAGAATCAGATACAAGAGG+AGG | 0.661004 | 3.1:+79820923 | MS.gene48421:CDS |
| TCTGAACTCGTGGAAAACCA+TGG | 0.661929 | 3.1:+79825438 | MS.gene48421:CDS |
| TACTACAGCAGGAACAACAT+CGG | 0.662535 | 3.1:+79825680 | MS.gene48421:CDS |
| AACTTGATGCCATGTTAATG+TGG | 0.663961 | 3.1:-79826471 | None:intergenic |
| GCTTCTGATATTGCAGAGAA+CGG | 0.665326 | 3.1:+79813846 | MS.gene48421:CDS |
| TCAAGCGAACACTGATCCAG+AGG | 0.666862 | 3.1:+79825409 | MS.gene48421:CDS |
| AATGTGGTAGTTTCCTGACA+GGG | 0.668078 | 3.1:-79826455 | None:intergenic |
| ACACTGGATGGAGACCCTGA+AGG | 0.668886 | 3.1:-79813658 | None:intergenic |
| CTTGATGCAACTATGTGAGA+AGG | 0.670181 | 3.1:-79815023 | None:intergenic |
| GTGATCATCACTACCATCAG+AGG | 0.671831 | 3.1:-79825478 | None:intergenic |
| TACGGAACCTGATATTTCTG+AGG | 0.671954 | 3.1:+79826733 | MS.gene48421:CDS |
| ACTGTGGGAGTTTCCAGACA+GGG | 0.673211 | 3.1:-79826641 | None:intergenic |
| AATCGTACTTGAAGTTCACA+GGG | 0.674039 | 3.1:-79821103 | None:intergenic |
| AGGTAAGGCAAAGAACATTG+AGG | 0.679924 | 3.1:-79826119 | None:intergenic |
| GCATCTTGTGAGGCAGAACG+AGG | 0.680779 | 3.1:+79826284 | MS.gene48421:CDS |
| AATATCTTCTGTATCACCTG+AGG | 0.687145 | 3.1:-79826219 | None:intergenic |
| AGGAAACTACCACATTAACA+TGG | 0.687711 | 3.1:+79826462 | MS.gene48421:CDS |
| TGAGCCCATAGCATCTTGTG+AGG | 0.687976 | 3.1:+79826274 | MS.gene48421:CDS |
| AAATTATATAATCAGGACGA+AGG | 0.689515 | 3.1:-79814967 | None:intergenic |
| ACTTGATGCAATGTTACTGT+GGG | 0.696862 | 3.1:-79826656 | None:intergenic |
| AGTTTCTGATGCAGTAGACG+AGG | 0.702716 | 3.1:+79826676 | MS.gene48421:CDS |
| GAGAATAGGGATACAACTAG+TGG | 0.706816 | 3.1:+79813604 | MS.gene48421:CDS |
| ACCAAGATAATTATTACACG+GGG | 0.708112 | 3.1:+79814990 | MS.gene48421:CDS |
| TGAGCATCTTGAGTTCAACA+GGG | 0.743931 | 3.1:+79825536 | MS.gene48421:CDS |
| CATCAACACAGGGAATAGTG+GGG | 0.755362 | 3.1:-79813402 | None:intergenic |
| TCTATAAAAGGAAATCACAG+CGG | 0.767722 | 3.1:+79821378 | MS.gene48421:CDS |
| TAGCAGACAATACCGCAAGG+GGG | 0.771280 | 3.1:-79824203 | None:intergenic |
| AAGACTTCGAGATCTCTACG+TGG | 0.784795 | 3.1:-79811001 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 79810989 | 79826832 | 79810989 | ID=MS.gene48421 |
| chr3.1 | mRNA | 79810989 | 79826832 | 79810989 | ID=MS.gene48421.t1;Parent=MS.gene48421 |
| chr3.1 | exon | 79810989 | 79811112 | 79810989 | ID=MS.gene48421.t1.exon1;Parent=MS.gene48421.t1 |
| chr3.1 | CDS | 79810989 | 79811112 | 79810989 | ID=cds.MS.gene48421.t1;Parent=MS.gene48421.t1 |
| chr3.1 | exon | 79812044 | 79812130 | 79812044 | ID=MS.gene48421.t1.exon2;Parent=MS.gene48421.t1 |
| chr3.1 | CDS | 79812044 | 79812130 | 79812044 | ID=cds.MS.gene48421.t1;Parent=MS.gene48421.t1 |
| chr3.1 | exon | 79813368 | 79813678 | 79813368 | ID=MS.gene48421.t1.exon3;Parent=MS.gene48421.t1 |
| chr3.1 | CDS | 79813368 | 79813678 | 79813368 | ID=cds.MS.gene48421.t1;Parent=MS.gene48421.t1 |
| chr3.1 | exon | 79813777 | 79813888 | 79813777 | ID=MS.gene48421.t1.exon4;Parent=MS.gene48421.t1 |
| chr3.1 | CDS | 79813777 | 79813888 | 79813777 | ID=cds.MS.gene48421.t1;Parent=MS.gene48421.t1 |
| chr3.1 | exon | 79813978 | 79814042 | 79813978 | ID=MS.gene48421.t1.exon5;Parent=MS.gene48421.t1 |
| chr3.1 | CDS | 79813978 | 79814042 | 79813978 | ID=cds.MS.gene48421.t1;Parent=MS.gene48421.t1 |
| chr3.1 | exon | 79814944 | 79815141 | 79814944 | ID=MS.gene48421.t1.exon6;Parent=MS.gene48421.t1 |
| chr3.1 | CDS | 79814944 | 79815141 | 79814944 | ID=cds.MS.gene48421.t1;Parent=MS.gene48421.t1 |
| chr3.1 | exon | 79815222 | 79815297 | 79815222 | ID=MS.gene48421.t1.exon7;Parent=MS.gene48421.t1 |
| chr3.1 | CDS | 79815222 | 79815297 | 79815222 | ID=cds.MS.gene48421.t1;Parent=MS.gene48421.t1 |
| chr3.1 | exon | 79815470 | 79815578 | 79815470 | ID=MS.gene48421.t1.exon8;Parent=MS.gene48421.t1 |
| chr3.1 | CDS | 79815470 | 79815578 | 79815470 | ID=cds.MS.gene48421.t1;Parent=MS.gene48421.t1 |
| chr3.1 | exon | 79819845 | 79819901 | 79819845 | ID=MS.gene48421.t1.exon9;Parent=MS.gene48421.t1 |
| chr3.1 | CDS | 79819845 | 79819901 | 79819845 | ID=cds.MS.gene48421.t1;Parent=MS.gene48421.t1 |
| chr3.1 | exon | 79820440 | 79820571 | 79820440 | ID=MS.gene48421.t1.exon10;Parent=MS.gene48421.t1 |
| chr3.1 | CDS | 79820440 | 79820571 | 79820440 | ID=cds.MS.gene48421.t1;Parent=MS.gene48421.t1 |
| chr3.1 | exon | 79820917 | 79821117 | 79820917 | ID=MS.gene48421.t1.exon11;Parent=MS.gene48421.t1 |
| chr3.1 | CDS | 79820917 | 79821117 | 79820917 | ID=cds.MS.gene48421.t1;Parent=MS.gene48421.t1 |
| chr3.1 | exon | 79821194 | 79821249 | 79821194 | ID=MS.gene48421.t1.exon12;Parent=MS.gene48421.t1 |
| chr3.1 | CDS | 79821194 | 79821249 | 79821194 | ID=cds.MS.gene48421.t1;Parent=MS.gene48421.t1 |
| chr3.1 | exon | 79821328 | 79821421 | 79821328 | ID=MS.gene48421.t1.exon13;Parent=MS.gene48421.t1 |
| chr3.1 | CDS | 79821328 | 79821421 | 79821328 | ID=cds.MS.gene48421.t1;Parent=MS.gene48421.t1 |
| chr3.1 | exon | 79824119 | 79824212 | 79824119 | ID=MS.gene48421.t1.exon14;Parent=MS.gene48421.t1 |
| chr3.1 | CDS | 79824119 | 79824212 | 79824119 | ID=cds.MS.gene48421.t1;Parent=MS.gene48421.t1 |
| chr3.1 | exon | 79824713 | 79824832 | 79824713 | ID=MS.gene48421.t1.exon15;Parent=MS.gene48421.t1 |
| chr3.1 | CDS | 79824713 | 79824832 | 79824713 | ID=cds.MS.gene48421.t1;Parent=MS.gene48421.t1 |
| chr3.1 | exon | 79825372 | 79825770 | 79825372 | ID=MS.gene48421.t1.exon16;Parent=MS.gene48421.t1 |
| chr3.1 | CDS | 79825372 | 79825770 | 79825372 | ID=cds.MS.gene48421.t1;Parent=MS.gene48421.t1 |
| chr3.1 | exon | 79826044 | 79826832 | 79826044 | ID=MS.gene48421.t1.exon17;Parent=MS.gene48421.t1 |
| chr3.1 | CDS | 79826044 | 79826832 | 79826044 | ID=cds.MS.gene48421.t1;Parent=MS.gene48421.t1 |
| Gene Sequence |
| Protein sequence |
