Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48452.t1 | XP_003602973.1 | 96.7 | 389 | 13 | 0 | 1 | 389 | 1 | 389 | 4.20E-208 | 733.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48452.t1 | Q9S7T8 | 57.4 | 390 | 163 | 3 | 1 | 387 | 1 | 390 | 2.0e-126 | 453.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48452.t1 | G7J5Q8 | 96.7 | 389 | 13 | 0 | 1 | 389 | 1 | 389 | 3.0e-208 | 733.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065945 | MS.gene48452 | PPI |
| MS.gene031697 | MS.gene48452 | PPI |
| MS.gene48452 | MS.gene045585 | PPI |
| MS.gene006610 | MS.gene48452 | PPI |
| MS.gene48452 | MS.gene065944 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48452.t1 | MTR_3g101010 | 96.658 | 389 | 13 | 0 | 1 | 389 | 1 | 389 | 0.0 | 764 |
| MS.gene48452.t1 | MTR_3g101030 | 72.864 | 398 | 88 | 4 | 10 | 389 | 34 | 429 | 0.0 | 577 |
| MS.gene48452.t1 | MTR_4g045707 | 73.643 | 387 | 98 | 2 | 4 | 389 | 5 | 388 | 0.0 | 568 |
| MS.gene48452.t1 | MTR_3g018740 | 71.907 | 388 | 106 | 2 | 1 | 387 | 1 | 386 | 0.0 | 555 |
| MS.gene48452.t1 | MTR_8g027395 | 70.801 | 387 | 109 | 1 | 3 | 389 | 15 | 397 | 0.0 | 553 |
| MS.gene48452.t1 | MTR_8g461160 | 70.026 | 387 | 112 | 2 | 5 | 387 | 6 | 392 | 0.0 | 536 |
| MS.gene48452.t1 | MTR_8g027420 | 67.959 | 387 | 109 | 2 | 3 | 389 | 4 | 375 | 0.0 | 528 |
| MS.gene48452.t1 | MTR_3g101050 | 73.107 | 383 | 80 | 6 | 9 | 387 | 33 | 396 | 0.0 | 523 |
| MS.gene48452.t1 | MTR_3g101180 | 66.667 | 399 | 122 | 4 | 1 | 388 | 1 | 399 | 0.0 | 522 |
| MS.gene48452.t1 | MTR_3g048000 | 66.927 | 384 | 106 | 3 | 6 | 388 | 28 | 391 | 0.0 | 514 |
| MS.gene48452.t1 | MTR_2g046030 | 66.240 | 391 | 123 | 3 | 1 | 387 | 1 | 386 | 0.0 | 510 |
| MS.gene48452.t1 | MTR_7g451890 | 64.781 | 389 | 133 | 2 | 5 | 389 | 14 | 402 | 0.0 | 508 |
| MS.gene48452.t1 | MTR_2g045980 | 65.985 | 391 | 124 | 3 | 1 | 387 | 1 | 386 | 5.30e-180 | 506 |
| MS.gene48452.t1 | MTR_4g088525 | 68.767 | 365 | 110 | 1 | 24 | 388 | 8 | 368 | 3.46e-179 | 503 |
| MS.gene48452.t1 | MTR_7g047780 | 64.781 | 389 | 133 | 2 | 5 | 389 | 14 | 402 | 1.49e-177 | 500 |
| MS.gene48452.t1 | MTR_7g050750 | 63.171 | 391 | 140 | 2 | 3 | 389 | 6 | 396 | 1.29e-176 | 497 |
| MS.gene48452.t1 | MTR_3g101130 | 63.753 | 389 | 134 | 3 | 4 | 389 | 5 | 389 | 2.86e-176 | 496 |
| MS.gene48452.t1 | MTR_7g050810 | 63.496 | 389 | 138 | 2 | 5 | 389 | 16 | 404 | 2.21e-175 | 494 |
| MS.gene48452.t1 | MTR_4g088535 | 65.625 | 384 | 112 | 3 | 5 | 388 | 7 | 370 | 2.75e-172 | 486 |
| MS.gene48452.t1 | MTR_3g015620 | 62.532 | 387 | 117 | 4 | 5 | 387 | 16 | 378 | 2.01e-157 | 448 |
| MS.gene48452.t1 | MTR_3g102920 | 60.789 | 380 | 109 | 5 | 13 | 388 | 66 | 409 | 1.62e-150 | 432 |
| MS.gene48452.t1 | MTR_3g100995 | 79.767 | 257 | 49 | 2 | 133 | 389 | 11 | 264 | 1.20e-148 | 421 |
| MS.gene48452.t1 | MTR_3g101190 | 53.728 | 389 | 103 | 3 | 1 | 389 | 1 | 312 | 3.18e-136 | 392 |
| MS.gene48452.t1 | MTR_3g101200 | 54.639 | 388 | 149 | 4 | 3 | 388 | 29 | 391 | 2.84e-135 | 392 |
| MS.gene48452.t1 | MTR_3g018747 | 70.769 | 260 | 60 | 3 | 129 | 387 | 9 | 253 | 2.67e-126 | 364 |
| MS.gene48452.t1 | MTR_3g100010 | 61.146 | 314 | 74 | 2 | 30 | 310 | 42 | 340 | 1.03e-123 | 361 |
| MS.gene48452.t1 | MTR_7g050830 | 57.006 | 314 | 102 | 3 | 5 | 296 | 16 | 318 | 1.04e-119 | 350 |
| MS.gene48452.t1 | MTR_3g015760 | 61.993 | 271 | 99 | 2 | 118 | 387 | 12 | 279 | 3.21e-106 | 314 |
| MS.gene48452.t1 | MTR_3g111160 | 73.810 | 210 | 52 | 2 | 181 | 389 | 13 | 220 | 4.50e-100 | 296 |
| MS.gene48452.t1 | MTR_3g100520 | 64.865 | 222 | 63 | 3 | 170 | 389 | 1 | 209 | 9.42e-97 | 287 |
| MS.gene48452.t1 | MTR_3g099970 | 69.898 | 196 | 42 | 2 | 129 | 324 | 20 | 198 | 1.12e-90 | 271 |
| MS.gene48452.t1 | MTR_3g101110 | 61.506 | 239 | 62 | 4 | 129 | 363 | 68 | 280 | 8.03e-90 | 272 |
| MS.gene48452.t1 | MTR_3g114310 | 41.337 | 404 | 204 | 12 | 6 | 389 | 20 | 410 | 4.42e-88 | 273 |
| MS.gene48452.t1 | MTR_2g046410 | 64.563 | 206 | 67 | 2 | 186 | 387 | 144 | 347 | 2.17e-85 | 263 |
| MS.gene48452.t1 | MTR_3g101020 | 70.899 | 189 | 24 | 3 | 203 | 389 | 1 | 160 | 3.64e-84 | 253 |
| MS.gene48452.t1 | MTR_3g101150 | 67.089 | 158 | 48 | 1 | 235 | 388 | 1 | 158 | 2.12e-68 | 213 |
| MS.gene48452.t1 | MTR_3g111150 | 62.147 | 177 | 43 | 2 | 7 | 183 | 1 | 153 | 2.73e-68 | 213 |
| MS.gene48452.t1 | MTR_3g102870 | 62.658 | 158 | 59 | 0 | 194 | 351 | 3 | 160 | 1.89e-63 | 201 |
| MS.gene48452.t1 | MTR_3g100990 | 69.173 | 133 | 41 | 0 | 1 | 133 | 1 | 133 | 1.18e-54 | 188 |
| MS.gene48452.t1 | MTR_4g093550 | 67.442 | 86 | 28 | 0 | 3 | 88 | 4 | 89 | 9.95e-31 | 113 |
| MS.gene48452.t1 | MTR_6g046890 | 69.048 | 84 | 23 | 1 | 13 | 96 | 7 | 87 | 1.50e-27 | 106 |
| MS.gene48452.t1 | MTR_3g101140 | 62.319 | 69 | 25 | 1 | 322 | 389 | 48 | 116 | 1.91e-18 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48452.t1 | AT1G47710 | 57.436 | 390 | 163 | 3 | 1 | 387 | 1 | 390 | 9.95e-165 | 467 |
| MS.gene48452.t1 | AT1G47710 | 57.436 | 390 | 163 | 3 | 1 | 387 | 28 | 417 | 4.36e-164 | 466 |
| MS.gene48452.t1 | AT3G45220 | 48.485 | 396 | 188 | 7 | 1 | 386 | 1 | 390 | 1.36e-129 | 378 |
| MS.gene48452.t1 | AT2G26390 | 49.874 | 397 | 177 | 9 | 1 | 386 | 1 | 386 | 1.56e-126 | 370 |
| MS.gene48452.t1 | AT2G25240 | 48.724 | 392 | 185 | 8 | 1 | 386 | 1 | 382 | 2.05e-125 | 367 |
| MS.gene48452.t1 | AT2G14540 | 45.013 | 391 | 188 | 6 | 1 | 386 | 29 | 397 | 3.95e-106 | 318 |
| MS.gene48452.t1 | AT1G64030 | 43.878 | 392 | 193 | 6 | 1 | 386 | 1 | 371 | 1.51e-104 | 314 |
| MS.gene48452.t1 | AT1G62170 | 42.640 | 394 | 194 | 6 | 1 | 386 | 62 | 431 | 4.28e-104 | 314 |
| MS.gene48452.t1 | AT1G62170 | 39.344 | 427 | 194 | 7 | 1 | 386 | 62 | 464 | 4.64e-97 | 297 |
| MS.gene48452.t1 | AT2G35580 | 41.221 | 393 | 188 | 9 | 1 | 386 | 15 | 371 | 2.23e-96 | 292 |
| MS.gene48452.t1 | AT1G64010 | 48.165 | 218 | 89 | 4 | 170 | 386 | 1 | 195 | 1.95e-64 | 204 |
| MS.gene48452.t1 | AT1G64010 | 47.291 | 203 | 83 | 4 | 185 | 386 | 2 | 181 | 1.06e-56 | 184 |
| MS.gene48452.t1 | AT1G63280 | 59.130 | 115 | 43 | 2 | 129 | 241 | 8 | 120 | 1.33e-40 | 140 |
| MS.gene48452.t1 | AT1G62160 | 37.500 | 200 | 97 | 5 | 192 | 386 | 42 | 218 | 5.88e-35 | 128 |
| MS.gene48452.t1 | AT1G51330 | 54.054 | 111 | 48 | 2 | 128 | 235 | 30 | 140 | 4.66e-30 | 114 |
| MS.gene48452.t1 | AT1G64020 | 31.707 | 123 | 77 | 4 | 1 | 119 | 1 | 120 | 2.22e-12 | 63.9 |
Find 85 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGAAGAAGTTCTTTAATA+AGG | 0.229650 | 3.1:-80190892 | None:intergenic |
| TTATCTTCGCCTTGCTTATA+AGG | 0.250540 | 3.1:-80191118 | None:intergenic |
| GATGTTGTTGTCTGATTCTT+TGG | 0.267730 | 3.1:-80189414 | None:intergenic |
| GAAAGACTTGTGAAATATAT+TGG | 0.284781 | 3.1:-80191410 | None:intergenic |
| AAGTGGAAGTAGGTGACTTT+AGG | 0.307716 | 3.1:+80191254 | MS.gene48452:CDS |
| CCAAAGTTCAATATTTCATT+TGG | 0.319061 | 3.1:+80191280 | MS.gene48452:CDS |
| ATTAGAAACATACCTTGTTC+TGG | 0.319499 | 3.1:-80189724 | None:intergenic |
| GTTGAGATGATCGGTGGATT+TGG | 0.324906 | 3.1:-80189531 | None:intergenic |
| GTGTTAAGCATAATCGCTTC+TGG | 0.336647 | 3.1:+80189464 | MS.gene48452:CDS |
| CAGGTGCTCAATCCTCTTGT+TGG | 0.355228 | 3.1:+80191595 | MS.gene48452:CDS |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.368008 | 3.1:+80191163 | MS.gene48452:CDS |
| ATTAAAGAACTTCTTCCTCT+TGG | 0.374691 | 3.1:+80190896 | MS.gene48452:CDS |
| AGCCCATGAATTCACTTCAT+TGG | 0.383113 | 3.1:-80190852 | None:intergenic |
| TTAAAGAACTTCTTCCTCTT+GGG | 0.399952 | 3.1:+80190897 | MS.gene48452:CDS |
| CTGCTGCATCTATATTGTTA+AGG | 0.411072 | 3.1:+80191473 | MS.gene48452:CDS |
| ACTGGAACAATCATCTTTGT+TGG | 0.411290 | 3.1:+80191571 | MS.gene48452:CDS |
| GAAAGAGAGGAGAGGACCGC+CGG | 0.415990 | 3.1:-80189603 | None:intergenic |
| AGGTGCTCAATCCTCTTGTT+GGG | 0.421016 | 3.1:+80191596 | MS.gene48452:CDS |
| AATCAGTGGTGACGATTTGT+TGG | 0.424876 | 3.1:-80189673 | None:intergenic |
| CGATTATGCTTAACACAACT+TGG | 0.425025 | 3.1:-80189457 | None:intergenic |
| AACAATCATCTTTGTTGGGC+AGG | 0.426226 | 3.1:+80191576 | MS.gene48452:CDS |
| GGAAGGAAGGTTGAAGAGAA+AGG | 0.426729 | 3.1:-80189652 | None:intergenic |
| TGACCAATGAAGTGAATTCA+TGG | 0.438108 | 3.1:+80190849 | MS.gene48452:CDS |
| CTCTTTCGTCGATGGTGTGT+GGG | 0.441048 | 3.1:+80189619 | MS.gene48452:CDS |
| CTGGAACAATCATCTTTGTT+GGG | 0.441449 | 3.1:+80191572 | MS.gene48452:CDS |
| TCTCTAATCATAAACAAGAA+AGG | 0.443816 | 3.1:-80191541 | None:intergenic |
| CCAAATGAAATATTGAACTT+TGG | 0.444637 | 3.1:-80191280 | None:intergenic |
| GTCATGAAAGGAACCTTGAC+TGG | 0.444676 | 3.1:-80191040 | None:intergenic |
| CGCTGAGTGATACGTTGGTT+TGG | 0.454352 | 3.1:-80189373 | None:intergenic |
| TTCATTGAAGTGAATGAAGA+AGG | 0.456815 | 3.1:+80191430 | MS.gene48452:CDS |
| CTCTAATCATAAACAAGAAA+GGG | 0.468439 | 3.1:-80191540 | None:intergenic |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.477583 | 3.1:-80189651 | None:intergenic |
| CCTCTCCTCTCTTTCGTCGA+TGG | 0.477669 | 3.1:+80189611 | MS.gene48452:CDS |
| ATGATTAGAGAAGATTTGAC+TGG | 0.486911 | 3.1:+80191553 | MS.gene48452:CDS |
| TCTCTTTCGTCGATGGTGTG+TGG | 0.490040 | 3.1:+80189618 | MS.gene48452:CDS |
| CTCTCCGACGCTGCTTCCGC+CGG | 0.490805 | 3.1:+80189584 | MS.gene48452:CDS |
| GTGAGACCTCCACCAGAGAA+AGG | 0.492502 | 3.1:-80191346 | None:intergenic |
| TTCTTCCAAATGCAAAAGAT+GGG | 0.493850 | 3.1:+80191164 | MS.gene48452:CDS |
| GATGATCGGTGGATTTGGAT+TGG | 0.502023 | 3.1:-80189526 | None:intergenic |
| GGCAGCATTGGTTGAAAAGG+TGG | 0.507398 | 3.1:+80191189 | MS.gene48452:CDS |
| CATAATCGCTTCTGGTTCTG+AGG | 0.508427 | 3.1:+80189472 | MS.gene48452:CDS |
| AAAAGATGGGTTGGCAGCAT+TGG | 0.509349 | 3.1:+80191177 | MS.gene48452:CDS |
| TGAAACTTCTGATATGCTAA+AGG | 0.511157 | 3.1:+80191306 | MS.gene48452:CDS |
| TCCTTTGAAGTATAGTGCAT+TGG | 0.511249 | 3.1:-80190951 | None:intergenic |
| TCCAAATGCAAAAGATGGGT+TGG | 0.513480 | 3.1:+80191168 | MS.gene48452:CDS |
| GATCGGTGGATTTGGATTGG+AGG | 0.520767 | 3.1:-80189523 | None:intergenic |
| GTTGGCAGCATTGGTTGAAA+AGG | 0.523393 | 3.1:+80191186 | MS.gene48452:CDS |
| TCCGACGCTGCTTCCGCCGG+CGG | 0.527559 | 3.1:+80189587 | MS.gene48452:CDS |
| TTCTGTTGATTTCCAGAACA+AGG | 0.528215 | 3.1:+80189712 | MS.gene48452:CDS |
| GTGACGATTTGTTGGAAGGA+AGG | 0.529024 | 3.1:-80189665 | None:intergenic |
| CTTGGTCTTCCTTATAAGCA+AGG | 0.532609 | 3.1:+80191109 | MS.gene48452:CDS |
| TGACTGGGCTACCATTCAAA+AGG | 0.534936 | 3.1:-80191024 | None:intergenic |
| ACCGCCGGCGGAAGCAGCGT+CGG | 0.539183 | 3.1:-80189588 | None:intergenic |
| GCTACAAAGTCTAGTCGAGT+TGG | 0.540695 | 3.1:-80191511 | None:intergenic |
| AGTGGTGACGATTTGTTGGA+AGG | 0.545140 | 3.1:-80189669 | None:intergenic |
| GCCAATGCACTATACTTCAA+AGG | 0.552753 | 3.1:+80190950 | MS.gene48452:CDS |
| TCTGATATGCTAAAGGAGCT+AGG | 0.556026 | 3.1:+80191313 | MS.gene48452:CDS |
| TTGAAAAGTTCTTGTTGCGT+GGG | 0.558109 | 3.1:-80189497 | None:intergenic |
| TGGGCTGAGAAAGAGACAAA+TGG | 0.564491 | 3.1:+80190869 | MS.gene48452:CDS |
| CAAAGCTGCTTTAAAATCAG+TGG | 0.564699 | 3.1:-80189687 | None:intergenic |
| GAGTGATACGTTGGTTTGGT+TGG | 0.571674 | 3.1:-80189369 | None:intergenic |
| AGAGAGGAGAGGACCGCCGG+CGG | 0.577049 | 3.1:-80189600 | None:intergenic |
| TTTGAATGGTAGCCCAGTCA+AGG | 0.578981 | 3.1:+80191027 | MS.gene48452:CDS |
| GTTGAAAAGTTCTTGTTGCG+TGG | 0.579308 | 3.1:-80189498 | None:intergenic |
| AGAACTTCTTCCTCTTGGGT+CGG | 0.580984 | 3.1:+80190901 | MS.gene48452:CDS |
| TGCGACGCTGAGTGATACGT+TGG | 0.588549 | 3.1:-80189378 | None:intergenic |
| AGCAGCGTCGGAGAGGATGA+CGG | 0.597356 | 3.1:-80189576 | None:intergenic |
| CACTATACTTCAAAGGAGCG+TGG | 0.606664 | 3.1:+80190957 | MS.gene48452:CDS |
| CCCTAAGATCACCCAACAAG+AGG | 0.607235 | 3.1:-80191607 | None:intergenic |
| GAAATATATTGGAAACACAA+AGG | 0.608551 | 3.1:-80191399 | None:intergenic |
| AGCGAAGTAGTTGAGATGAT+CGG | 0.609929 | 3.1:-80189540 | None:intergenic |
| ACACACCATCGACGAAAGAG+AGG | 0.610492 | 3.1:-80189616 | None:intergenic |
| AACACAACTTGGAGTGAGAG+TGG | 0.612789 | 3.1:-80189446 | None:intergenic |
| TCATGAAAGGAACCTTGACT+GGG | 0.618368 | 3.1:-80191039 | None:intergenic |
| TAGTCGAGTTGGAATACGCA+TGG | 0.620841 | 3.1:-80191500 | None:intergenic |
| CGGCGGAAGCAGCGTCGGAG+AGG | 0.624853 | 3.1:-80189583 | None:intergenic |
| ATAATCGCTTCTGGTTCTGA+GGG | 0.633560 | 3.1:+80189473 | MS.gene48452:CDS |
| TAATCATAAACAAGAAAGGG+TGG | 0.640706 | 3.1:-80191537 | None:intergenic |
| AGAAGGCACTGAAGCTGCTG+CGG | 0.641571 | 3.1:+80191447 | MS.gene48452:CDS |
| GGTCGGTCAACAACGCAACA+CGG | 0.651182 | 3.1:+80190918 | MS.gene48452:CDS |
| GACCAATGAAGTGAATTCAT+GGG | 0.663853 | 3.1:+80190850 | MS.gene48452:CDS |
| CCATCGACGAAAGAGAGGAG+AGG | 0.680251 | 3.1:-80189611 | None:intergenic |
| TATGCTAAAGGAGCTAGGTG+TGG | 0.687658 | 3.1:+80191318 | MS.gene48452:CDS |
| GAAGTAGTTGAGATGATCGG+TGG | 0.701068 | 3.1:-80189537 | None:intergenic |
| GCGTTGTTGACCGACCCAAG+AGG | 0.724514 | 3.1:-80190911 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGATTTTTAAATTTGATA+TGG | + | chr3.1:80190808-80190827 | MS.gene48452:intron | 10.0% |
| !! | GATTTATTTGAATAACATAA+AGG | - | chr3.1:80190399-80190418 | None:intergenic | 15.0% |
| !!! | AGAAGAATTTATAATTTTGT+TGG | - | chr3.1:80190745-80190764 | None:intergenic | 15.0% |
| !!! | ATAAGCTATTTTTATAGTAA+AGG | + | chr3.1:80189890-80189909 | MS.gene48452:intron | 15.0% |
| !!! | TAAATTTGATATGGTTTTAA+AGG | + | chr3.1:80190817-80190836 | MS.gene48452:intron | 15.0% |
| !! | ATAAGCTTATATGAATGAAA+AGG | - | chr3.1:80190199-80190218 | None:intergenic | 20.0% |
| !!! | AATGATAAGCTTTAAGATTT+AGG | + | chr3.1:80189800-80189819 | MS.gene48452:intron | 20.0% |
| !!! | ATGATAAGCTTTAAGATTTA+GGG | + | chr3.1:80189801-80189820 | MS.gene48452:intron | 20.0% |
| !!! | GTTGTTTTTATAAGCTATAT+TGG | + | chr3.1:80189950-80189969 | MS.gene48452:intron | 20.0% |
| ! | AAGATGGAAAAACATTCTAA+TGG | - | chr3.1:80190269-80190288 | None:intergenic | 25.0% |
| ! | AATAAGTTGTTTATCCAAAC+AGG | - | chr3.1:80189827-80189846 | None:intergenic | 25.0% |
| ! | CCAAAGTTCAATATTTCATT+TGG | + | chr3.1:80191280-80191299 | MS.gene48452:CDS | 25.0% |
| ! | CCAAATGAAATATTGAACTT+TGG | - | chr3.1:80191283-80191302 | None:intergenic | 25.0% |
| ! | CTCTAATCATAAACAAGAAA+GGG | - | chr3.1:80191543-80191562 | None:intergenic | 25.0% |
| ! | GAAAGACTTGTGAAATATAT+TGG | - | chr3.1:80191413-80191432 | None:intergenic | 25.0% |
| ! | GAAATATATTGGAAACACAA+AGG | - | chr3.1:80191402-80191421 | None:intergenic | 25.0% |
| ! | TAAATGTGTATCAAGCAAAA+AGG | + | chr3.1:80190446-80190465 | MS.gene48452:intron | 25.0% |
| ! | TAATTAATAGCTTACGTGTT+TGG | - | chr3.1:80190093-80190112 | None:intergenic | 25.0% |
| ! | TAGTACTACAAAAATTGAAG+TGG | - | chr3.1:80190543-80190562 | None:intergenic | 25.0% |
| ! | TCTCTAATCATAAACAAGAA+AGG | - | chr3.1:80191544-80191563 | None:intergenic | 25.0% |
| !!! | TTTGATGGTTTTAAAGTTCT+TGG | + | chr3.1:80191091-80191110 | MS.gene48452:CDS | 25.0% |
| ATGAATGAAAAGGACTCATT+CGG | - | chr3.1:80190189-80190208 | None:intergenic | 30.0% | |
| ATGATTAGAGAAGATTTGAC+TGG | + | chr3.1:80191553-80191572 | MS.gene48452:CDS | 30.0% | |
| ATTAAAGAACTTCTTCCTCT+TGG | + | chr3.1:80190896-80190915 | MS.gene48452:CDS | 30.0% | |
| ATTAGAAACATACCTTGTTC+TGG | - | chr3.1:80189727-80189746 | None:intergenic | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.1:80190895-80190914 | None:intergenic | 30.0% | |
| TAACATAAAGGTTTGTCACA+TGG | - | chr3.1:80190387-80190406 | None:intergenic | 30.0% | |
| TAATCATAAACAAGAAAGGG+TGG | - | chr3.1:80191540-80191559 | None:intergenic | 30.0% | |
| TGAAACTTCTGATATGCTAA+AGG | + | chr3.1:80191306-80191325 | MS.gene48452:CDS | 30.0% | |
| TGAAAGCTGTGGTATATATT+TGG | + | chr3.1:80190291-80190310 | MS.gene48452:intron | 30.0% | |
| TGCTTGATACACATTTATGA+AGG | - | chr3.1:80190443-80190462 | None:intergenic | 30.0% | |
| TTAAAGAACTTCTTCCTCTT+GGG | + | chr3.1:80190897-80190916 | MS.gene48452:CDS | 30.0% | |
| TTCATTGAAGTGAATGAAGA+AGG | + | chr3.1:80191430-80191449 | MS.gene48452:CDS | 30.0% | |
| TTCTTCCAAATGCAAAAGAT+GGG | + | chr3.1:80191164-80191183 | MS.gene48452:CDS | 30.0% | |
| TTTATGAAGGAAAGACAAAC+AGG | - | chr3.1:80190430-80190449 | None:intergenic | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | + | chr3.1:80191163-80191182 | MS.gene48452:CDS | 30.0% | |
| ! | GGTAACTATCATTTTCTCAT+GGG | - | chr3.1:80190168-80190187 | None:intergenic | 30.0% |
| AAGCTGTGGTATATATTTGG+AGG | + | chr3.1:80190294-80190313 | MS.gene48452:intron | 35.0% | |
| AAGGAAAGACAAACAGGTAT+AGG | - | chr3.1:80190424-80190443 | None:intergenic | 35.0% | |
| ACTGGAACAATCATCTTTGT+TGG | + | chr3.1:80191571-80191590 | MS.gene48452:CDS | 35.0% | |
| CGATTATGCTTAACACAACT+TGG | - | chr3.1:80189460-80189479 | None:intergenic | 35.0% | |
| CTGCTGCATCTATATTGTTA+AGG | + | chr3.1:80191473-80191492 | MS.gene48452:CDS | 35.0% | |
| CTGGAACAATCATCTTTGTT+GGG | + | chr3.1:80191572-80191591 | MS.gene48452:CDS | 35.0% | |
| GACCAATGAAGTGAATTCAT+GGG | + | chr3.1:80190850-80190869 | MS.gene48452:CDS | 35.0% | |
| GATGTTGTTGTCTGATTCTT+TGG | - | chr3.1:80189417-80189436 | None:intergenic | 35.0% | |
| GCATTGCATGCTAAATTAGT+TGG | - | chr3.1:80190710-80190729 | None:intergenic | 35.0% | |
| GTCAGATAGTTGTATGCTAA+AGG | - | chr3.1:80190588-80190607 | None:intergenic | 35.0% | |
| TACCACAGCTTTCATTAAGA+TGG | - | chr3.1:80190285-80190304 | None:intergenic | 35.0% | |
| TGACCAATGAAGTGAATTCA+TGG | + | chr3.1:80190849-80190868 | MS.gene48452:CDS | 35.0% | |
| TTATCTTCGCCTTGCTTATA+AGG | - | chr3.1:80191121-80191140 | None:intergenic | 35.0% | |
| TTCCATCTTAATGAAAGCTG+TGG | + | chr3.1:80190280-80190299 | MS.gene48452:intron | 35.0% | |
| TTGAAAAGTTCTTGTTGCGT+GGG | - | chr3.1:80189500-80189519 | None:intergenic | 35.0% | |
| ! | AACAAACTGCTTCTTTTTGC+TGG | - | chr3.1:80191065-80191084 | None:intergenic | 35.0% |
| ! | CGGTAACTATCATTTTCTCA+TGG | - | chr3.1:80190169-80190188 | None:intergenic | 35.0% |
| ! | TACGAGTTTCACCTTTTGAA+TGG | + | chr3.1:80191013-80191032 | MS.gene48452:CDS | 35.0% |
| ! | TTCTTTTTGCTGGTCATGAA+AGG | - | chr3.1:80191055-80191074 | None:intergenic | 35.0% |
| ! | TTTAAGATTTAGGGCCTGTT+TGG | + | chr3.1:80189810-80189829 | MS.gene48452:intron | 35.0% |
| !! | CAAAGCTGCTTTAAAATCAG+TGG | - | chr3.1:80189690-80189709 | None:intergenic | 35.0% |
| !! | TCCTTTGAAGTATAGTGCAT+TGG | - | chr3.1:80190954-80190973 | None:intergenic | 35.0% |
| !! | TTCTGTTGATTTCCAGAACA+AGG | + | chr3.1:80189712-80189731 | MS.gene48452:CDS | 35.0% |
| !!! | CAGTTTGTTAGAGCTTTTGA+TGG | + | chr3.1:80191076-80191095 | MS.gene48452:CDS | 35.0% |
| AACAATCATCTTTGTTGGGC+AGG | + | chr3.1:80191576-80191595 | MS.gene48452:CDS | 40.0% | |
| AAGTGGAAGTAGGTGACTTT+AGG | + | chr3.1:80191254-80191273 | MS.gene48452:CDS | 40.0% | |
| AGCCCATGAATTCACTTCAT+TGG | - | chr3.1:80190855-80190874 | None:intergenic | 40.0% | |
| AGCGAAGTAGTTGAGATGAT+CGG | - | chr3.1:80189543-80189562 | None:intergenic | 40.0% | |
| CAAGCTTCCTCTTGAAAAAG+TGG | + | chr3.1:80191237-80191256 | MS.gene48452:CDS | 40.0% | |
| CCTCTTGAAAAAGTGGAAGT+AGG | + | chr3.1:80191244-80191263 | MS.gene48452:CDS | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.1:80189654-80189673 | None:intergenic | 40.0% | |
| GCCAATGCACTATACTTCAA+AGG | + | chr3.1:80190950-80190969 | MS.gene48452:CDS | 40.0% | |
| GCTACGTATCATCTATAAGC+TGG | + | chr3.1:80190221-80190240 | MS.gene48452:intron | 40.0% | |
| GTGTTAAGCATAATCGCTTC+TGG | + | chr3.1:80189464-80189483 | MS.gene48452:CDS | 40.0% | |
| GTTGAAAAGTTCTTGTTGCG+TGG | - | chr3.1:80189501-80189520 | None:intergenic | 40.0% | |
| TCATGAAAGGAACCTTGACT+GGG | - | chr3.1:80191042-80191061 | None:intergenic | 40.0% | |
| TCCAAATGCAAAAGATGGGT+TGG | + | chr3.1:80191168-80191187 | MS.gene48452:CDS | 40.0% | |
| TCTGATATGCTAAAGGAGCT+AGG | + | chr3.1:80191313-80191332 | MS.gene48452:CDS | 40.0% | |
| TCTGCAATTTCCTGCTACAA+TGG | + | chr3.1:80190494-80190513 | MS.gene48452:intron | 40.0% | |
| ! | AATCAGTGGTGACGATTTGT+TGG | - | chr3.1:80189676-80189695 | None:intergenic | 40.0% |
| ! | CTTGGTCTTCCTTATAAGCA+AGG | + | chr3.1:80191109-80191128 | MS.gene48452:CDS | 40.0% |
| !! | ATAATCGCTTCTGGTTCTGA+GGG | + | chr3.1:80189473-80189492 | MS.gene48452:CDS | 40.0% |
| !!! | CCTACTTCCACTTTTTCAAG+AGG | - | chr3.1:80191247-80191266 | None:intergenic | 40.0% |
| AACACAACTTGGAGTGAGAG+TGG | - | chr3.1:80189449-80189468 | None:intergenic | 45.0% | |
| AGAACTTCTTCCTCTTGGGT+CGG | + | chr3.1:80190901-80190920 | MS.gene48452:CDS | 45.0% | |
| AGGTGCTCAATCCTCTTGTT+GGG | + | chr3.1:80191596-80191615 | MS.gene48452:CDS | 45.0% | |
| CACTATACTTCAAAGGAGCG+TGG | + | chr3.1:80190957-80190976 | MS.gene48452:CDS | 45.0% | |
| GAAGTAGTTGAGATGATCGG+TGG | - | chr3.1:80189540-80189559 | None:intergenic | 45.0% | |
| GCTACAAAGTCTAGTCGAGT+TGG | - | chr3.1:80191514-80191533 | None:intergenic | 45.0% | |
| GGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.1:80189655-80189674 | None:intergenic | 45.0% | |
| GTCATGAAAGGAACCTTGAC+TGG | - | chr3.1:80191043-80191062 | None:intergenic | 45.0% | |
| TATGCTAAAGGAGCTAGGTG+TGG | + | chr3.1:80191318-80191337 | MS.gene48452:CDS | 45.0% | |
| TGACTGGGCTACCATTCAAA+AGG | - | chr3.1:80191027-80191046 | None:intergenic | 45.0% | |
| TGGGCTGAGAAAGAGACAAA+TGG | + | chr3.1:80190869-80190888 | MS.gene48452:CDS | 45.0% | |
| TGGTGGAGGTCTCACAAAAA+TGG | + | chr3.1:80191354-80191373 | MS.gene48452:CDS | 45.0% | |
| TTTGAATGGTAGCCCAGTCA+AGG | + | chr3.1:80191027-80191046 | MS.gene48452:CDS | 45.0% | |
| ! | CTTTGAAGAGCCATTGTAGC+AGG | - | chr3.1:80190507-80190526 | None:intergenic | 45.0% |
| ! | GATGATCGGTGGATTTGGAT+TGG | - | chr3.1:80189529-80189548 | None:intergenic | 45.0% |
| ! | GCCAACCCATCTTTTGCATT+TGG | - | chr3.1:80191172-80191191 | None:intergenic | 45.0% |
| ! | GTTGAGATGATCGGTGGATT+TGG | - | chr3.1:80189534-80189553 | None:intergenic | 45.0% |
| ! | GTTTTACCTTTCTCTGGTGG+AGG | + | chr3.1:80191340-80191359 | MS.gene48452:CDS | 45.0% |
| !! | AAAAGATGGGTTGGCAGCAT+TGG | + | chr3.1:80191177-80191196 | MS.gene48452:CDS | 45.0% |
| !! | AGTGGTGACGATTTGTTGGA+AGG | - | chr3.1:80189672-80189691 | None:intergenic | 45.0% |
| !! | CATAATCGCTTCTGGTTCTG+AGG | + | chr3.1:80189472-80189491 | MS.gene48452:CDS | 45.0% |
| !! | GAGTGATACGTTGGTTTGGT+TGG | - | chr3.1:80189372-80189391 | None:intergenic | 45.0% |
| !! | GGTGTGGTTTTACCTTTCTC+TGG | + | chr3.1:80191334-80191353 | MS.gene48452:CDS | 45.0% |
| !! | GTGACGATTTGTTGGAAGGA+AGG | - | chr3.1:80189668-80189687 | None:intergenic | 45.0% |
| !! | GTGGTTTTACCTTTCTCTGG+TGG | + | chr3.1:80191337-80191356 | MS.gene48452:CDS | 45.0% |
| !! | GTTGGCAGCATTGGTTGAAA+AGG | + | chr3.1:80191186-80191205 | MS.gene48452:CDS | 45.0% |
| !! | TAGTCGAGTTGGAATACGCA+TGG | - | chr3.1:80191503-80191522 | None:intergenic | 45.0% |
| ACACACCATCGACGAAAGAG+AGG | - | chr3.1:80189619-80189638 | None:intergenic | 50.0% | |
| CAGGTGCTCAATCCTCTTGT+TGG | + | chr3.1:80191595-80191614 | MS.gene48452:CDS | 50.0% | |
| CTCTTTCGTCGATGGTGTGT+GGG | + | chr3.1:80189619-80189638 | MS.gene48452:CDS | 50.0% | |
| TCTCTTTCGTCGATGGTGTG+TGG | + | chr3.1:80189618-80189637 | MS.gene48452:CDS | 50.0% | |
| ! | CGCTGAGTGATACGTTGGTT+TGG | - | chr3.1:80189376-80189395 | None:intergenic | 50.0% |
| ! | GATCGGTGGATTTGGATTGG+AGG | - | chr3.1:80189526-80189545 | None:intergenic | 50.0% |
| !! | GGCAGCATTGGTTGAAAAGG+TGG | + | chr3.1:80191189-80191208 | MS.gene48452:CDS | 50.0% |
| CCATCGACGAAAGAGAGGAG+AGG | - | chr3.1:80189614-80189633 | None:intergenic | 55.0% | |
| CCTCTCCTCTCTTTCGTCGA+TGG | + | chr3.1:80189611-80189630 | MS.gene48452:CDS | 55.0% | |
| GGTCGGTCAACAACGCAACA+CGG | + | chr3.1:80190918-80190937 | MS.gene48452:CDS | 55.0% | |
| GTGAGACCTCCACCAGAGAA+AGG | - | chr3.1:80191349-80191368 | None:intergenic | 55.0% | |
| TGCGACGCTGAGTGATACGT+TGG | - | chr3.1:80189381-80189400 | None:intergenic | 55.0% | |
| !! | AGAAGGCACTGAAGCTGCTG+CGG | + | chr3.1:80191447-80191466 | MS.gene48452:CDS | 55.0% |
| GAAAGAGAGGAGAGGACCGC+CGG | - | chr3.1:80189606-80189625 | None:intergenic | 60.0% | |
| GCGTTGTTGACCGACCCAAG+AGG | - | chr3.1:80190914-80190933 | None:intergenic | 60.0% | |
| ! | AGCAGCGTCGGAGAGGATGA+CGG | - | chr3.1:80189579-80189598 | None:intergenic | 60.0% |
| AGAGAGGAGAGGACCGCCGG+CGG | - | chr3.1:80189603-80189622 | None:intergenic | 70.0% | |
| CTCTCCGACGCTGCTTCCGC+CGG | + | chr3.1:80189584-80189603 | MS.gene48452:CDS | 70.0% | |
| ACCGCCGGCGGAAGCAGCGT+CGG | - | chr3.1:80189591-80189610 | None:intergenic | 75.0% | |
| TCCGACGCTGCTTCCGCCGG+CGG | + | chr3.1:80189587-80189606 | MS.gene48452:CDS | 75.0% | |
| ! | CGGCGGAAGCAGCGTCGGAG+AGG | - | chr3.1:80189586-80189605 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 80189347 | 80191621 | 80189347 | ID=MS.gene48452 |
| chr3.1 | mRNA | 80189347 | 80191621 | 80189347 | ID=MS.gene48452.t1;Parent=MS.gene48452 |
| chr3.1 | exon | 80189347 | 80189733 | 80189347 | ID=MS.gene48452.t1.exon1;Parent=MS.gene48452.t1 |
| chr3.1 | CDS | 80189347 | 80189733 | 80189347 | ID=cds.MS.gene48452.t1;Parent=MS.gene48452.t1 |
| chr3.1 | exon | 80190839 | 80191621 | 80190839 | ID=MS.gene48452.t1.exon2;Parent=MS.gene48452.t1 |
| chr3.1 | CDS | 80190839 | 80191621 | 80190839 | ID=cds.MS.gene48452.t1;Parent=MS.gene48452.t1 |
| Gene Sequence |
| Protein sequence |
