Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48453.t1 | XP_003602973.1 | 82.2 | 387 | 68 | 1 | 5 | 390 | 3 | 389 | 5.00E-177 | 630.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48453.t1 | Q9S7T8 | 54.4 | 388 | 173 | 4 | 5 | 388 | 3 | 390 | 9.3e-116 | 418.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48453.t1 | G7J5Q8 | 82.2 | 387 | 68 | 1 | 5 | 390 | 3 | 389 | 3.6e-177 | 630.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065945 | MS.gene48453 | PPI |
| MS.gene48453 | MS.gene045585 | PPI |
| MS.gene006610 | MS.gene48453 | PPI |
| MS.gene48453 | MS.gene065944 | PPI |
| MS.gene031697 | MS.gene48453 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48453.t1 | MTR_3g101010 | 81.748 | 389 | 70 | 1 | 3 | 390 | 1 | 389 | 0.0 | 622 |
| MS.gene48453.t1 | MTR_4g045707 | 70.000 | 390 | 115 | 2 | 1 | 390 | 1 | 388 | 0.0 | 549 |
| MS.gene48453.t1 | MTR_3g018740 | 71.907 | 388 | 107 | 2 | 3 | 389 | 1 | 387 | 0.0 | 548 |
| MS.gene48453.t1 | MTR_8g027395 | 69.509 | 387 | 115 | 1 | 4 | 390 | 14 | 397 | 0.0 | 541 |
| MS.gene48453.t1 | MTR_3g101180 | 69.720 | 393 | 108 | 3 | 7 | 388 | 6 | 398 | 0.0 | 541 |
| MS.gene48453.t1 | MTR_3g101030 | 66.910 | 411 | 109 | 6 | 3 | 390 | 23 | 429 | 0.0 | 537 |
| MS.gene48453.t1 | MTR_8g461160 | 70.951 | 389 | 106 | 3 | 7 | 389 | 6 | 393 | 0.0 | 533 |
| MS.gene48453.t1 | MTR_8g027420 | 68.475 | 387 | 108 | 3 | 4 | 390 | 3 | 375 | 0.0 | 520 |
| MS.gene48453.t1 | MTR_7g050750 | 65.561 | 392 | 128 | 3 | 5 | 390 | 6 | 396 | 0.0 | 514 |
| MS.gene48453.t1 | MTR_7g451890 | 65.296 | 389 | 130 | 2 | 7 | 390 | 14 | 402 | 0.0 | 510 |
| MS.gene48453.t1 | MTR_7g047780 | 65.128 | 390 | 129 | 3 | 7 | 390 | 14 | 402 | 5.50e-179 | 503 |
| MS.gene48453.t1 | MTR_3g101130 | 66.667 | 390 | 120 | 4 | 6 | 390 | 5 | 389 | 4.08e-178 | 501 |
| MS.gene48453.t1 | MTR_2g046030 | 65.217 | 391 | 128 | 3 | 3 | 389 | 1 | 387 | 2.36e-177 | 499 |
| MS.gene48453.t1 | MTR_7g050810 | 64.031 | 392 | 130 | 3 | 7 | 390 | 16 | 404 | 7.83e-177 | 498 |
| MS.gene48453.t1 | MTR_4g088525 | 67.493 | 363 | 115 | 1 | 26 | 388 | 8 | 367 | 5.73e-176 | 494 |
| MS.gene48453.t1 | MTR_3g048000 | 65.354 | 381 | 112 | 3 | 8 | 387 | 28 | 389 | 1.79e-175 | 494 |
| MS.gene48453.t1 | MTR_2g045980 | 64.962 | 391 | 129 | 3 | 3 | 389 | 1 | 387 | 3.64e-175 | 493 |
| MS.gene48453.t1 | MTR_3g101050 | 67.969 | 384 | 97 | 4 | 11 | 388 | 33 | 396 | 6.05e-175 | 493 |
| MS.gene48453.t1 | MTR_4g088535 | 63.281 | 384 | 122 | 4 | 1 | 384 | 1 | 365 | 4.53e-166 | 470 |
| MS.gene48453.t1 | MTR_3g100995 | 83.333 | 258 | 41 | 1 | 133 | 390 | 9 | 264 | 1.59e-156 | 441 |
| MS.gene48453.t1 | MTR_3g015620 | 61.082 | 388 | 122 | 4 | 7 | 389 | 16 | 379 | 5.87e-153 | 437 |
| MS.gene48453.t1 | MTR_3g102920 | 57.614 | 394 | 119 | 7 | 7 | 388 | 51 | 408 | 4.96e-140 | 405 |
| MS.gene48453.t1 | MTR_3g101200 | 55.556 | 387 | 144 | 4 | 5 | 388 | 29 | 390 | 5.10e-137 | 397 |
| MS.gene48453.t1 | MTR_3g101190 | 52.821 | 390 | 104 | 4 | 3 | 390 | 1 | 312 | 1.91e-129 | 374 |
| MS.gene48453.t1 | MTR_3g018747 | 70.769 | 260 | 61 | 2 | 131 | 389 | 9 | 254 | 5.59e-123 | 356 |
| MS.gene48453.t1 | MTR_7g050830 | 57.643 | 314 | 100 | 3 | 7 | 298 | 16 | 318 | 8.34e-122 | 355 |
| MS.gene48453.t1 | MTR_3g100010 | 58.974 | 312 | 80 | 3 | 30 | 308 | 40 | 336 | 2.35e-117 | 345 |
| MS.gene48453.t1 | MTR_3g015760 | 64.751 | 261 | 87 | 3 | 131 | 389 | 23 | 280 | 1.01e-105 | 313 |
| MS.gene48453.t1 | MTR_3g111160 | 71.292 | 209 | 58 | 2 | 183 | 390 | 13 | 220 | 7.58e-96 | 285 |
| MS.gene48453.t1 | MTR_3g100520 | 65.158 | 221 | 63 | 4 | 172 | 390 | 1 | 209 | 2.40e-94 | 281 |
| MS.gene48453.t1 | MTR_3g101020 | 74.194 | 186 | 22 | 1 | 205 | 390 | 1 | 160 | 1.33e-90 | 270 |
| MS.gene48453.t1 | MTR_3g114310 | 43.970 | 398 | 201 | 13 | 8 | 390 | 20 | 410 | 3.78e-89 | 275 |
| MS.gene48453.t1 | MTR_2g046410 | 66.019 | 206 | 65 | 2 | 188 | 389 | 144 | 348 | 2.58e-88 | 271 |
| MS.gene48453.t1 | MTR_3g101110 | 59.414 | 239 | 66 | 3 | 131 | 364 | 68 | 280 | 4.88e-87 | 265 |
| MS.gene48453.t1 | MTR_3g099970 | 67.857 | 196 | 46 | 2 | 131 | 326 | 20 | 198 | 1.14e-86 | 261 |
| MS.gene48453.t1 | MTR_3g101150 | 65.605 | 157 | 49 | 1 | 237 | 388 | 1 | 157 | 5.65e-67 | 209 |
| MS.gene48453.t1 | MTR_3g111150 | 58.757 | 177 | 49 | 2 | 9 | 185 | 1 | 153 | 8.42e-65 | 204 |
| MS.gene48453.t1 | MTR_3g102870 | 62.264 | 159 | 59 | 1 | 194 | 352 | 1 | 158 | 1.20e-61 | 196 |
| MS.gene48453.t1 | MTR_3g100990 | 62.914 | 151 | 55 | 1 | 6 | 156 | 4 | 153 | 5.80e-54 | 186 |
| MS.gene48453.t1 | MTR_4g093550 | 68.605 | 86 | 27 | 0 | 5 | 90 | 4 | 89 | 9.99e-33 | 118 |
| MS.gene48453.t1 | MTR_6g046890 | 72.581 | 62 | 17 | 0 | 26 | 87 | 18 | 79 | 1.89e-22 | 92.4 |
| MS.gene48453.t1 | MTR_3g101140 | 59.459 | 74 | 18 | 2 | 324 | 390 | 48 | 116 | 7.73e-19 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48453.t1 | AT1G47710 | 54.103 | 390 | 175 | 4 | 3 | 388 | 1 | 390 | 5.29e-148 | 424 |
| MS.gene48453.t1 | AT1G47710 | 54.103 | 390 | 175 | 4 | 3 | 388 | 28 | 417 | 3.71e-147 | 424 |
| MS.gene48453.t1 | AT3G45220 | 47.089 | 395 | 194 | 5 | 3 | 387 | 1 | 390 | 4.23e-123 | 361 |
| MS.gene48453.t1 | AT2G26390 | 48.130 | 401 | 177 | 10 | 3 | 387 | 1 | 386 | 4.67e-120 | 353 |
| MS.gene48453.t1 | AT2G25240 | 47.436 | 390 | 192 | 7 | 3 | 387 | 1 | 382 | 1.29e-118 | 350 |
| MS.gene48453.t1 | AT2G14540 | 43.734 | 391 | 192 | 7 | 3 | 387 | 29 | 397 | 2.43e-100 | 304 |
| MS.gene48453.t1 | AT1G64030 | 42.092 | 392 | 199 | 6 | 3 | 387 | 1 | 371 | 3.08e-100 | 303 |
| MS.gene48453.t1 | AT1G62170 | 43.597 | 367 | 175 | 6 | 29 | 387 | 89 | 431 | 6.28e-97 | 296 |
| MS.gene48453.t1 | AT1G62170 | 40.000 | 400 | 175 | 7 | 29 | 387 | 89 | 464 | 6.14e-90 | 279 |
| MS.gene48453.t1 | AT2G35580 | 38.520 | 392 | 199 | 9 | 3 | 387 | 15 | 371 | 2.52e-86 | 267 |
| MS.gene48453.t1 | AT1G64010 | 47.926 | 217 | 90 | 4 | 172 | 387 | 1 | 195 | 1.74e-62 | 199 |
| MS.gene48453.t1 | AT1G64010 | 47.030 | 202 | 84 | 4 | 187 | 387 | 2 | 181 | 2.31e-55 | 181 |
| MS.gene48453.t1 | AT1G63280 | 55.085 | 118 | 49 | 2 | 128 | 243 | 5 | 120 | 2.02e-37 | 132 |
| MS.gene48453.t1 | AT1G62160 | 36.634 | 202 | 95 | 4 | 194 | 387 | 42 | 218 | 2.64e-34 | 127 |
| MS.gene48453.t1 | AT1G51330 | 51.786 | 112 | 51 | 3 | 129 | 237 | 29 | 140 | 1.17e-26 | 105 |
| MS.gene48453.t1 | AT1G64020 | 35.398 | 113 | 70 | 3 | 12 | 122 | 10 | 121 | 2.81e-11 | 60.8 |
Find 82 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCACTGTACTTTAA+AGG | 0.119947 | 3.1:+80201675 | MS.gene48453:CDS |
| CTAGAAAAGAAGTGAATTTA+TGG | 0.193975 | 3.1:+80201574 | MS.gene48453:CDS |
| GAAAGATTTGTGGAATATAT+TGG | 0.236993 | 3.1:-80202135 | None:intergenic |
| CTTCTTCTTGCTGGTCATAA+AGG | 0.249810 | 3.1:-80201778 | None:intergenic |
| CAATTATGCTAAGCACAATT+TGG | 0.273316 | 3.1:-80200735 | None:intergenic |
| TTATCTTTGCCTTGCTTATA+CGG | 0.281478 | 3.1:-80201843 | None:intergenic |
| GTTGAGATGATAGGAGGATT+TGG | 0.317509 | 3.1:-80200809 | None:intergenic |
| CCGAAGTTCAATATTTCATT+TGG | 0.319061 | 3.1:+80202005 | MS.gene48453:CDS |
| AAGTGGAAGTAGGTGACTTT+AGG | 0.323594 | 3.1:+80201979 | MS.gene48453:CDS |
| AATAAACTGCTTCTTCTTGC+TGG | 0.330367 | 3.1:-80201787 | None:intergenic |
| AAAATCATAGTCTTTCGTTT+TGG | 0.334440 | 3.1:-80201724 | None:intergenic |
| GAAATCAACCGAAGTAATAT+TGG | 0.334744 | 3.1:-80200980 | None:intergenic |
| CACTGTACTTTAAAGGACTA+TGG | 0.351189 | 3.1:+80201682 | MS.gene48453:CDS |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.368008 | 3.1:+80201888 | MS.gene48453:CDS |
| GACAAAGTAGTTGAGATGAT+AGG | 0.382402 | 3.1:-80200818 | None:intergenic |
| ACCGGAACAATCATCTTTGT+TGG | 0.389749 | 3.1:+80202293 | MS.gene48453:CDS |
| TTCTTCTTGCTGGTCATAAA+GGG | 0.398726 | 3.1:-80201777 | None:intergenic |
| AAAAGATGGGTTGGCAGCTT+TGG | 0.400986 | 3.1:+80201902 | MS.gene48453:CDS |
| TTACTTCAATGAAAGATTTG+TGG | 0.403242 | 3.1:-80202145 | None:intergenic |
| ATAATTGCTGCCGGCGCTGA+GGG | 0.415624 | 3.1:+80200751 | MS.gene48453:CDS |
| ATTAAAGAAATTCTTCCTCT+AGG | 0.418830 | 3.1:+80201621 | MS.gene48453:CDS |
| TGCTGAGTGAAAAGTTCGTT+TGG | 0.424564 | 3.1:-80200651 | None:intergenic |
| TTAAAGAAATTCTTCCTCTA+GGG | 0.431048 | 3.1:+80201622 | MS.gene48453:CDS |
| TTTGGTTTGTTATTGATTCA+CGG | 0.436219 | 3.1:-80200633 | None:intergenic |
| TAGAAAAGAAGTGAATTTAT+GGG | 0.440693 | 3.1:+80201575 | MS.gene48453:CDS |
| AACAATCATCTTTGTTGGAC+AGG | 0.440935 | 3.1:+80202298 | MS.gene48453:CDS |
| CAAGCTTCCTCTTGATAAAG+TGG | 0.447424 | 3.1:+80201962 | MS.gene48453:CDS |
| GCCACAGTTTGTTTGAAAGA+AGG | 0.450408 | 3.1:-80200943 | None:intergenic |
| GATGATAGGAGGATTTGGAT+TGG | 0.450524 | 3.1:-80200804 | None:intergenic |
| TCCAACAAAGATGATTGTTC+CGG | 0.452329 | 3.1:-80202294 | None:intergenic |
| TTCATTGAAGTAAATGAAGA+AGG | 0.457204 | 3.1:+80202155 | MS.gene48453:CDS |
| CAGGTGCATAATCCTCTTGA+TGG | 0.466685 | 3.1:+80202317 | MS.gene48453:CDS |
| GGCAGCTTTGGTTGAAAAGG+TGG | 0.473464 | 3.1:+80201914 | MS.gene48453:CDS |
| GATAGGAGGATTTGGATTGG+AGG | 0.478086 | 3.1:-80200801 | None:intergenic |
| CATAATTGCTGCCGGCGCTG+AGG | 0.479644 | 3.1:+80200750 | MS.gene48453:CDS |
| GTCAGCCCACCACCAAAGAA+TGG | 0.482628 | 3.1:-80202071 | None:intergenic |
| TTCTTCCAAATGCAAAAGAT+GGG | 0.493850 | 3.1:+80201889 | MS.gene48453:CDS |
| CTGTGTGGGACCCTCAGCGC+CGG | 0.495025 | 3.1:-80200761 | None:intergenic |
| GTTGGCAGCTTTGGTTGAAA+AGG | 0.497725 | 3.1:+80201911 | MS.gene48453:CDS |
| GAGAGGTGAGGTCCACCATT+GGG | 0.498859 | 3.1:-80200877 | None:intergenic |
| GTGCTTAGCATAATTGCTGC+CGG | 0.499260 | 3.1:+80200742 | MS.gene48453:CDS |
| TGCATTAGCAAAGATGAGTC+TGG | 0.499282 | 3.1:-80201661 | None:intergenic |
| TGAAACTTCTGATATGCTAA+AGG | 0.511157 | 3.1:+80202031 | MS.gene48453:CDS |
| TCCAAATGCAAAAGATGGGT+TGG | 0.513480 | 3.1:+80201893 | MS.gene48453:CDS |
| CTTTCCGACGCTGCTCCCAA+TGG | 0.518620 | 3.1:+80200862 | MS.gene48453:CDS |
| TCCGACGCTGCTCCCAATGG+TGG | 0.525987 | 3.1:+80200865 | MS.gene48453:CDS |
| TCCACCATTGGGAGCAGCGT+CGG | 0.537513 | 3.1:-80200866 | None:intergenic |
| CTAATTAGAGATGATTTGAC+CGG | 0.538425 | 3.1:+80202275 | MS.gene48453:CDS |
| TTCGGTTGATTTCGTGAACA+AGG | 0.539714 | 3.1:+80200990 | MS.gene48453:CDS |
| AGATGAGTCTGGTTAAGTTG+TGG | 0.543037 | 3.1:-80201650 | None:intergenic |
| TTGTTATTGATTCACGGAGA+CGG | 0.543116 | 3.1:-80200627 | None:intergenic |
| TCTCTAATTAGATATAAGAA+TGG | 0.543906 | 3.1:-80202263 | None:intergenic |
| AGAGAGGTGAGGTCCACCAT+TGG | 0.545927 | 3.1:-80200878 | None:intergenic |
| AAAGTAGTTGAGATGATAGG+AGG | 0.550259 | 3.1:-80200815 | None:intergenic |
| TTTCAAAGCCAATATTACTT+CGG | 0.555785 | 3.1:+80200972 | MS.gene48453:CDS |
| TCTGATATGCTAAAGGAGCT+AGG | 0.556026 | 3.1:+80202038 | MS.gene48453:CDS |
| TCTCAATGGCAGCTCACTCA+AGG | 0.557298 | 3.1:+80201752 | MS.gene48453:CDS |
| GCCACAAAATCCATTCGAGT+TGG | 0.558047 | 3.1:-80202233 | None:intergenic |
| TCGAGAAGTTGTTGCTGTGT+GGG | 0.558925 | 3.1:-80200775 | None:intergenic |
| TATGCGTGGTCCAACTCGAA+TGG | 0.564142 | 3.1:+80202223 | MS.gene48453:CDS |
| CCTACTTCCACTTTATCAAG+AGG | 0.564451 | 3.1:-80201969 | None:intergenic |
| CCTCTTGATAAAGTGGAAGT+AGG | 0.566916 | 3.1:+80201969 | MS.gene48453:CDS |
| CCAAATGAAATATTGAACTT+CGG | 0.570929 | 3.1:-80202005 | None:intergenic |
| TGCTAAAATCACCCATCAAG+AGG | 0.587103 | 3.1:-80202329 | None:intergenic |
| TAATTAGATATAAGAATGGA+TGG | 0.589002 | 3.1:-80202259 | None:intergenic |
| ACCTTCTTTCAAACAAACTG+TGG | 0.593361 | 3.1:+80200942 | MS.gene48453:CDS |
| AGGTGCATAATCCTCTTGAT+GGG | 0.593480 | 3.1:+80202318 | MS.gene48453:CDS |
| CTTGGTCTTCCGTATAAGCA+AGG | 0.596297 | 3.1:+80201834 | MS.gene48453:CDS |
| CAGTTTATTAGAGCTTTCGA+TGG | 0.597662 | 3.1:+80201801 | MS.gene48453:CDS |
| CGTCGGAAAGCACAAAGGAA+AGG | 0.606863 | 3.1:-80200849 | None:intergenic |
| AAGCACAATTTGGAGTGACA+AGG | 0.621657 | 3.1:-80200725 | None:intergenic |
| GTCGAGAAGTTGTTGCTGTG+TGG | 0.626344 | 3.1:-80200776 | None:intergenic |
| AGAAGGCACTGAAGCTGCTG+CGG | 0.627362 | 3.1:+80202172 | MS.gene48453:CDS |
| AGCACAATTTGGAGTGACAA+GGG | 0.647225 | 3.1:-80200724 | None:intergenic |
| TGAGTGAGCTGCCATTGAGA+AGG | 0.669085 | 3.1:-80201749 | None:intergenic |
| TTATTGATTCACGGAGACGG+AGG | 0.669410 | 3.1:-80200624 | None:intergenic |
| AGCAGCGTCGGAAAGCACAA+AGG | 0.678442 | 3.1:-80200854 | None:intergenic |
| TATGCTAAAGGAGCTAGGTG+TGG | 0.687658 | 3.1:+80202043 | MS.gene48453:CDS |
| ACACACCATTGACAAAAGAG+AGG | 0.696625 | 3.1:-80200894 | None:intergenic |
| ATAGAACTACAATGTATGCG+TGG | 0.696877 | 3.1:+80202209 | MS.gene48453:CDS |
| CCATTGACAAAAGAGAGGTG+AGG | 0.752482 | 3.1:-80200889 | None:intergenic |
| AAGTTGTGGATTGACCCTAG+AGG | 0.786372 | 3.1:-80201636 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATAAATTGGTTAA+TGG | - | chr3.1:80201079-80201098 | None:intergenic | 10.0% |
| !! | AAAGAGTAAAATTAATAAAT+TGG | - | chr3.1:80201086-80201105 | None:intergenic | 10.0% |
| !! | AAAGTTGTATATATTTAATT+TGG | + | chr3.1:80201276-80201295 | MS.gene48453:intron | 10.0% |
| !!! | ATATACAACTTTAAAAATAT+TGG | - | chr3.1:80201268-80201287 | None:intergenic | 10.0% |
| !!! | TATATTTGATGTTGTTTAAA+AGG | + | chr3.1:80201542-80201561 | MS.gene48453:intron | 15.0% |
| !! | ATGAAATCTTGAAATACTTA+GGG | + | chr3.1:80201122-80201141 | MS.gene48453:intron | 20.0% |
| !! | ATGGATATATTTATGTCAAT+CGG | - | chr3.1:80201150-80201169 | None:intergenic | 20.0% |
| !! | TAATTAGATATAAGAATGGA+TGG | - | chr3.1:80202262-80202281 | None:intergenic | 20.0% |
| !! | TAGAAAAGAAGTGAATTTAT+GGG | + | chr3.1:80201575-80201594 | MS.gene48453:CDS | 20.0% |
| !! | TCTCTAATTAGATATAAGAA+TGG | - | chr3.1:80202266-80202285 | None:intergenic | 20.0% |
| ! | ATAGTGCAAAAAAGATTGAT+TGG | - | chr3.1:80201517-80201536 | None:intergenic | 25.0% |
| ! | ATTAAAGAAATTCTTCCTCT+AGG | + | chr3.1:80201621-80201640 | MS.gene48453:CDS | 25.0% |
| ! | ATTAACACCTTACAAAAGAT+CGG | - | chr3.1:80201399-80201418 | None:intergenic | 25.0% |
| ! | CATATATTCTGTTGCTAAAT+TGG | - | chr3.1:80201441-80201460 | None:intergenic | 25.0% |
| ! | CCAAATGAAATATTGAACTT+CGG | - | chr3.1:80202008-80202027 | None:intergenic | 25.0% |
| ! | CTAGAAAAGAAGTGAATTTA+TGG | + | chr3.1:80201574-80201593 | MS.gene48453:CDS | 25.0% |
| ! | GAAAGATTTGTGGAATATAT+TGG | - | chr3.1:80202138-80202157 | None:intergenic | 25.0% |
| ! | GATGAAATCTTGAAATACTT+AGG | + | chr3.1:80201121-80201140 | MS.gene48453:intron | 25.0% |
| ! | TCTTATGCTAATTAGATGAA+TGG | + | chr3.1:80201351-80201370 | MS.gene48453:intron | 25.0% |
| ! | TTAAAGAAATTCTTCCTCTA+GGG | + | chr3.1:80201622-80201641 | MS.gene48453:CDS | 25.0% |
| ! | TTACTTCAATGAAAGATTTG+TGG | - | chr3.1:80202148-80202167 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.1:80202155-80202174 | MS.gene48453:CDS | 25.0% |
| ! | TTCTTACTAATTTCAACACA+AGG | + | chr3.1:80201204-80201223 | MS.gene48453:intron | 25.0% |
| ! | TTTCAAAGCCAATATTACTT+CGG | + | chr3.1:80200972-80200991 | MS.gene48453:CDS | 25.0% |
| !! | AAAATCATAGTCTTTCGTTT+TGG | - | chr3.1:80201727-80201746 | None:intergenic | 25.0% |
| !!! | TTTGGTTTGTTATTGATTCA+CGG | - | chr3.1:80200636-80200655 | None:intergenic | 25.0% |
| ATTCTGTTGCTAAATTGGTT+TGG | - | chr3.1:80201436-80201455 | None:intergenic | 30.0% | |
| CAATTATGCTAAGCACAATT+TGG | - | chr3.1:80200738-80200757 | None:intergenic | 30.0% | |
| CCGAAGTTCAATATTTCATT+TGG | + | chr3.1:80202005-80202024 | MS.gene48453:CDS | 30.0% | |
| CTAATTAGAGATGATTTGAC+CGG | + | chr3.1:80202275-80202294 | MS.gene48453:CDS | 30.0% | |
| GAAATCAACCGAAGTAATAT+TGG | - | chr3.1:80200983-80201002 | None:intergenic | 30.0% | |
| TGAAACTTCTGATATGCTAA+AGG | + | chr3.1:80202031-80202050 | MS.gene48453:CDS | 30.0% | |
| TTACTAATTTCAACACAAGG+AGG | + | chr3.1:80201207-80201226 | MS.gene48453:intron | 30.0% | |
| TTATCTTTGCCTTGCTTATA+CGG | - | chr3.1:80201846-80201865 | None:intergenic | 30.0% | |
| TTCTTCCAAATGCAAAAGAT+GGG | + | chr3.1:80201889-80201908 | MS.gene48453:CDS | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | + | chr3.1:80201888-80201907 | MS.gene48453:CDS | 30.0% | |
| ! | TATGATTTTCACCTTCTCAA+TGG | + | chr3.1:80201738-80201757 | MS.gene48453:CDS | 30.0% |
| !!! | TTCGATGGTTTTAAAGTTCT+TGG | + | chr3.1:80201816-80201835 | MS.gene48453:CDS | 30.0% |
| AAAGTAGTTGAGATGATAGG+AGG | - | chr3.1:80200818-80200837 | None:intergenic | 35.0% | |
| AACAATCATCTTTGTTGGAC+AGG | + | chr3.1:80202298-80202317 | MS.gene48453:CDS | 35.0% | |
| AATAAACTGCTTCTTCTTGC+TGG | - | chr3.1:80201790-80201809 | None:intergenic | 35.0% | |
| AATTTCAACACAAGGAGGAA+GGG | + | chr3.1:80201212-80201231 | MS.gene48453:intron | 35.0% | |
| ACCTTCTTTCAAACAAACTG+TGG | + | chr3.1:80200942-80200961 | MS.gene48453:CDS | 35.0% | |
| AGCAGAGACAAGAATAAAGA+TGG | - | chr3.1:80201169-80201188 | None:intergenic | 35.0% | |
| ATAGAACTACAATGTATGCG+TGG | + | chr3.1:80202209-80202228 | MS.gene48453:CDS | 35.0% | |
| CAGTTTATTAGAGCTTTCGA+TGG | + | chr3.1:80201801-80201820 | MS.gene48453:CDS | 35.0% | |
| GACAAAGTAGTTGAGATGAT+AGG | - | chr3.1:80200821-80200840 | None:intergenic | 35.0% | |
| GCTAATGCACTGTACTTTAA+AGG | + | chr3.1:80201675-80201694 | MS.gene48453:CDS | 35.0% | |
| TAATTTCAACACAAGGAGGA+AGG | + | chr3.1:80201211-80201230 | MS.gene48453:intron | 35.0% | |
| TCCAACAAAGATGATTGTTC+CGG | - | chr3.1:80202297-80202316 | None:intergenic | 35.0% | |
| TTCTTCTTGCTGGTCATAAA+GGG | - | chr3.1:80201780-80201799 | None:intergenic | 35.0% | |
| ! | CACTGTACTTTAAAGGACTA+TGG | + | chr3.1:80201682-80201701 | MS.gene48453:CDS | 35.0% |
| !! | TTGTTATTGATTCACGGAGA+CGG | - | chr3.1:80200630-80200649 | None:intergenic | 35.0% |
| !! | TTTTACCATTCTTTGGTGGT+GGG | + | chr3.1:80202066-80202085 | MS.gene48453:CDS | 35.0% |
| AAGTGGAAGTAGGTGACTTT+AGG | + | chr3.1:80201979-80201998 | MS.gene48453:CDS | 40.0% | |
| ACACACCATTGACAAAAGAG+AGG | - | chr3.1:80200897-80200916 | None:intergenic | 40.0% | |
| ACCGGAACAATCATCTTTGT+TGG | + | chr3.1:80202293-80202312 | MS.gene48453:CDS | 40.0% | |
| AGGTGCATAATCCTCTTGAT+GGG | + | chr3.1:80202318-80202337 | MS.gene48453:CDS | 40.0% | |
| ATTTCAACACAAGGAGGAAG+GGG | + | chr3.1:80201213-80201232 | MS.gene48453:intron | 40.0% | |
| CAAGCTTCCTCTTGATAAAG+TGG | + | chr3.1:80201962-80201981 | MS.gene48453:CDS | 40.0% | |
| CCTACTTCCACTTTATCAAG+AGG | - | chr3.1:80201972-80201991 | None:intergenic | 40.0% | |
| CCTCTTGATAAAGTGGAAGT+AGG | + | chr3.1:80201969-80201988 | MS.gene48453:CDS | 40.0% | |
| CTTCTTCTTGCTGGTCATAA+AGG | - | chr3.1:80201781-80201800 | None:intergenic | 40.0% | |
| GATGATAGGAGGATTTGGAT+TGG | - | chr3.1:80200807-80200826 | None:intergenic | 40.0% | |
| GTTGAGATGATAGGAGGATT+TGG | - | chr3.1:80200812-80200831 | None:intergenic | 40.0% | |
| TCCAAATGCAAAAGATGGGT+TGG | + | chr3.1:80201893-80201912 | MS.gene48453:CDS | 40.0% | |
| TCTGATATGCTAAAGGAGCT+AGG | + | chr3.1:80202038-80202057 | MS.gene48453:CDS | 40.0% | |
| TGCATTAGCAAAGATGAGTC+TGG | - | chr3.1:80201664-80201683 | None:intergenic | 40.0% | |
| TGCTGAGTGAAAAGTTCGTT+TGG | - | chr3.1:80200654-80200673 | None:intergenic | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | + | chr3.1:80201594-80201613 | MS.gene48453:CDS | 40.0% | |
| ! | AAGCACAATTTGGAGTGACA+AGG | - | chr3.1:80200728-80200747 | None:intergenic | 40.0% |
| ! | AGATGAGTCTGGTTAAGTTG+TGG | - | chr3.1:80201653-80201672 | None:intergenic | 40.0% |
| ! | AGCACAATTTGGAGTGACAA+GGG | - | chr3.1:80200727-80200746 | None:intergenic | 40.0% |
| ! | AGTCTCACCGATCTTTTGTA+AGG | + | chr3.1:80201389-80201408 | MS.gene48453:intron | 40.0% |
| ! | CTCTTTTGTCAATGGTGTGT+GGG | + | chr3.1:80200897-80200916 | MS.gene48453:CDS | 40.0% |
| ! | GCCACAGTTTGTTTGAAAGA+AGG | - | chr3.1:80200946-80200965 | None:intergenic | 40.0% |
| ! | GTTTTACCATTCTTTGGTGG+TGG | + | chr3.1:80202065-80202084 | MS.gene48453:CDS | 40.0% |
| ! | TCTCTTTTGTCAATGGTGTG+TGG | + | chr3.1:80200896-80200915 | MS.gene48453:CDS | 40.0% |
| ! | TTCGGTTGATTTCGTGAACA+AGG | + | chr3.1:80200990-80201009 | MS.gene48453:CDS | 40.0% |
| !! | GGTGTGGTTTTACCATTCTT+TGG | + | chr3.1:80202059-80202078 | MS.gene48453:CDS | 40.0% |
| !! | GTGGTTTTACCATTCTTTGG+TGG | + | chr3.1:80202062-80202081 | MS.gene48453:CDS | 40.0% |
| !! | TCCAACTCGAATGGATTTTG+TGG | + | chr3.1:80202232-80202251 | MS.gene48453:CDS | 40.0% |
| CAGGTGCATAATCCTCTTGA+TGG | + | chr3.1:80202317-80202336 | MS.gene48453:CDS | 45.0% | |
| CCATTGACAAAAGAGAGGTG+AGG | - | chr3.1:80200892-80200911 | None:intergenic | 45.0% | |
| GCCACAAAATCCATTCGAGT+TGG | - | chr3.1:80202236-80202255 | None:intergenic | 45.0% | |
| GTGCTTAGCATAATTGCTGC+CGG | + | chr3.1:80200742-80200761 | MS.gene48453:CDS | 45.0% | |
| TATGCTAAAGGAGCTAGGTG+TGG | + | chr3.1:80202043-80202062 | MS.gene48453:CDS | 45.0% | |
| TCGAGAAGTTGTTGCTGTGT+GGG | - | chr3.1:80200778-80200797 | None:intergenic | 45.0% | |
| ! | AAGTTGTGGATTGACCCTAG+AGG | - | chr3.1:80201639-80201658 | None:intergenic | 45.0% |
| ! | CCTCACCTCTCTTTTGTCAA+TGG | + | chr3.1:80200889-80200908 | MS.gene48453:CDS | 45.0% |
| ! | CTTGGTCTTCCGTATAAGCA+AGG | + | chr3.1:80201834-80201853 | MS.gene48453:CDS | 45.0% |
| ! | GATAGGAGGATTTGGATTGG+AGG | - | chr3.1:80200804-80200823 | None:intergenic | 45.0% |
| ! | GCCAACCCATCTTTTGCATT+TGG | - | chr3.1:80201897-80201916 | None:intergenic | 45.0% |
| ! | GTTGGCAGCTTTGGTTGAAA+AGG | + | chr3.1:80201911-80201930 | MS.gene48453:CDS | 45.0% |
| !! | AAAAGATGGGTTGGCAGCTT+TGG | + | chr3.1:80201902-80201921 | MS.gene48453:CDS | 45.0% |
| !! | TTATTGATTCACGGAGACGG+AGG | - | chr3.1:80200627-80200646 | None:intergenic | 45.0% |
| GTCGAGAAGTTGTTGCTGTG+TGG | - | chr3.1:80200779-80200798 | None:intergenic | 50.0% | |
| TATGCGTGGTCCAACTCGAA+TGG | + | chr3.1:80202223-80202242 | MS.gene48453:CDS | 50.0% | |
| TCTCAATGGCAGCTCACTCA+AGG | + | chr3.1:80201752-80201771 | MS.gene48453:CDS | 50.0% | |
| TGAGTGAGCTGCCATTGAGA+AGG | - | chr3.1:80201752-80201771 | None:intergenic | 50.0% | |
| ! | CGTCGGAAAGCACAAAGGAA+AGG | - | chr3.1:80200852-80200871 | None:intergenic | 50.0% |
| ! | GGCAGCTTTGGTTGAAAAGG+TGG | + | chr3.1:80201914-80201933 | MS.gene48453:CDS | 50.0% |
| !! | TGGTGGGCTGACAAAAATGG+TGG | + | chr3.1:80202082-80202101 | MS.gene48453:CDS | 50.0% |
| !! | TGGTGGTGGGCTGACAAAAA+TGG | + | chr3.1:80202079-80202098 | MS.gene48453:CDS | 50.0% |
| AGAGAGGTGAGGTCCACCAT+TGG | - | chr3.1:80200881-80200900 | None:intergenic | 55.0% | |
| GAGAGGTGAGGTCCACCATT+GGG | - | chr3.1:80200880-80200899 | None:intergenic | 55.0% | |
| GTCAGCCCACCACCAAAGAA+TGG | - | chr3.1:80202074-80202093 | None:intergenic | 55.0% | |
| ! | AGCAGCGTCGGAAAGCACAA+AGG | - | chr3.1:80200857-80200876 | None:intergenic | 55.0% |
| ! | ATAATTGCTGCCGGCGCTGA+GGG | + | chr3.1:80200751-80200770 | MS.gene48453:CDS | 55.0% |
| !! | AGAAGGCACTGAAGCTGCTG+CGG | + | chr3.1:80202172-80202191 | MS.gene48453:CDS | 55.0% |
| CATAATTGCTGCCGGCGCTG+AGG | + | chr3.1:80200750-80200769 | MS.gene48453:CDS | 60.0% | |
| CTTTCCGACGCTGCTCCCAA+TGG | + | chr3.1:80200862-80200881 | MS.gene48453:CDS | 60.0% | |
| TCCACCATTGGGAGCAGCGT+CGG | - | chr3.1:80200869-80200888 | None:intergenic | 60.0% | |
| TCCGACGCTGCTCCCAATGG+TGG | + | chr3.1:80200865-80200884 | MS.gene48453:CDS | 65.0% | |
| CTGTGTGGGACCCTCAGCGC+CGG | - | chr3.1:80200764-80200783 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 80200619 | 80202343 | 80200619 | ID=MS.gene48453 |
| chr3.1 | mRNA | 80200619 | 80202343 | 80200619 | ID=MS.gene48453.t1;Parent=MS.gene48453 |
| chr3.1 | exon | 80200619 | 80201011 | 80200619 | ID=MS.gene48453.t1.exon1;Parent=MS.gene48453.t1 |
| chr3.1 | CDS | 80200619 | 80201011 | 80200619 | ID=cds.MS.gene48453.t1;Parent=MS.gene48453.t1 |
| chr3.1 | exon | 80201564 | 80202343 | 80201564 | ID=MS.gene48453.t1.exon2;Parent=MS.gene48453.t1 |
| chr3.1 | CDS | 80201564 | 80202343 | 80201564 | ID=cds.MS.gene48453.t1;Parent=MS.gene48453.t1 |
| Gene Sequence |
| Protein sequence |
