Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48454.t1 | RHN70239.1 | 85.4 | 439 | 42 | 3 | 27 | 444 | 1 | 438 | 7.10E-204 | 719.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48454.t1 | Q9S7T8 | 53.5 | 381 | 172 | 3 | 66 | 442 | 11 | 390 | 1.6e-116 | 421.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48454.t1 | A0A396IX06 | 85.4 | 439 | 42 | 3 | 27 | 444 | 1 | 438 | 5.1e-204 | 719.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene031697 | MS.gene48454 | PPI |
| MS.gene065945 | MS.gene48454 | PPI |
| MS.gene48454 | MS.gene045585 | PPI |
| MS.gene48454 | MS.gene065944 | PPI |
| MS.gene006610 | MS.gene48454 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48454.t1 | MTR_3g101030 | 86.047 | 430 | 41 | 3 | 33 | 444 | 1 | 429 | 0.0 | 739 |
| MS.gene48454.t1 | MTR_3g101010 | 77.494 | 391 | 82 | 3 | 56 | 444 | 3 | 389 | 0.0 | 583 |
| MS.gene48454.t1 | MTR_3g101050 | 72.040 | 397 | 88 | 8 | 52 | 443 | 19 | 397 | 0.0 | 528 |
| MS.gene48454.t1 | MTR_3g018740 | 69.509 | 387 | 110 | 4 | 59 | 442 | 5 | 386 | 0.0 | 526 |
| MS.gene48454.t1 | MTR_4g045707 | 68.930 | 383 | 111 | 5 | 65 | 444 | 11 | 388 | 0.0 | 514 |
| MS.gene48454.t1 | MTR_8g027395 | 65.250 | 400 | 127 | 5 | 48 | 444 | 7 | 397 | 0.0 | 510 |
| MS.gene48454.t1 | MTR_3g101180 | 64.484 | 397 | 130 | 5 | 56 | 442 | 3 | 398 | 3.14e-175 | 496 |
| MS.gene48454.t1 | MTR_8g461160 | 64.359 | 390 | 134 | 3 | 57 | 442 | 4 | 392 | 3.34e-174 | 493 |
| MS.gene48454.t1 | MTR_8g027420 | 64.691 | 388 | 117 | 5 | 59 | 444 | 6 | 375 | 2.11e-171 | 486 |
| MS.gene48454.t1 | MTR_7g451890 | 61.880 | 383 | 142 | 2 | 66 | 444 | 20 | 402 | 9.91e-170 | 482 |
| MS.gene48454.t1 | MTR_3g048000 | 64.136 | 382 | 112 | 5 | 64 | 442 | 31 | 390 | 2.47e-169 | 481 |
| MS.gene48454.t1 | MTR_4g088525 | 65.940 | 367 | 117 | 3 | 79 | 443 | 8 | 368 | 1.75e-168 | 478 |
| MS.gene48454.t1 | MTR_7g047780 | 62.663 | 383 | 139 | 2 | 66 | 444 | 20 | 402 | 9.41e-168 | 477 |
| MS.gene48454.t1 | MTR_7g050810 | 62.532 | 387 | 133 | 4 | 66 | 444 | 22 | 404 | 1.13e-167 | 477 |
| MS.gene48454.t1 | MTR_7g050750 | 60.836 | 383 | 146 | 2 | 66 | 444 | 14 | 396 | 1.09e-163 | 467 |
| MS.gene48454.t1 | MTR_3g101130 | 61.273 | 377 | 143 | 2 | 69 | 444 | 15 | 389 | 3.98e-163 | 465 |
| MS.gene48454.t1 | MTR_2g046030 | 63.077 | 390 | 130 | 7 | 59 | 442 | 5 | 386 | 2.98e-162 | 463 |
| MS.gene48454.t1 | MTR_2g045980 | 63.333 | 390 | 129 | 7 | 59 | 442 | 5 | 386 | 9.78e-162 | 461 |
| MS.gene48454.t1 | MTR_4g088535 | 63.377 | 385 | 116 | 6 | 57 | 439 | 5 | 366 | 1.67e-160 | 458 |
| MS.gene48454.t1 | MTR_3g015620 | 61.598 | 388 | 120 | 6 | 59 | 442 | 16 | 378 | 5.47e-149 | 429 |
| MS.gene48454.t1 | MTR_3g100995 | 73.333 | 255 | 67 | 1 | 190 | 444 | 11 | 264 | 4.13e-137 | 394 |
| MS.gene48454.t1 | MTR_3g102920 | 57.256 | 379 | 122 | 4 | 68 | 442 | 66 | 408 | 1.11e-136 | 399 |
| MS.gene48454.t1 | MTR_3g101200 | 52.658 | 395 | 158 | 5 | 50 | 442 | 23 | 390 | 8.30e-132 | 385 |
| MS.gene48454.t1 | MTR_3g101190 | 53.994 | 363 | 102 | 4 | 84 | 444 | 13 | 312 | 3.39e-124 | 363 |
| MS.gene48454.t1 | MTR_3g018747 | 69.231 | 260 | 62 | 3 | 186 | 442 | 9 | 253 | 2.54e-121 | 353 |
| MS.gene48454.t1 | MTR_7g050830 | 56.169 | 308 | 104 | 2 | 66 | 353 | 22 | 318 | 8.56e-114 | 337 |
| MS.gene48454.t1 | MTR_3g100010 | 55.000 | 320 | 96 | 2 | 85 | 371 | 40 | 344 | 1.53e-110 | 330 |
| MS.gene48454.t1 | MTR_3g015760 | 61.654 | 266 | 100 | 2 | 178 | 442 | 15 | 279 | 1.12e-103 | 310 |
| MS.gene48454.t1 | MTR_3g111160 | 65.315 | 222 | 71 | 3 | 227 | 444 | 1 | 220 | 8.31e-92 | 277 |
| MS.gene48454.t1 | MTR_3g100520 | 60.360 | 222 | 71 | 3 | 227 | 444 | 1 | 209 | 6.00e-88 | 267 |
| MS.gene48454.t1 | MTR_3g101110 | 58.475 | 236 | 66 | 4 | 189 | 418 | 71 | 280 | 8.17e-83 | 256 |
| MS.gene48454.t1 | MTR_3g099970 | 65.641 | 195 | 50 | 2 | 186 | 379 | 20 | 198 | 1.74e-82 | 252 |
| MS.gene48454.t1 | MTR_3g114310 | 40.399 | 401 | 212 | 12 | 61 | 444 | 20 | 410 | 4.56e-82 | 259 |
| MS.gene48454.t1 | MTR_2g046410 | 63.107 | 206 | 68 | 4 | 243 | 442 | 144 | 347 | 2.47e-79 | 249 |
| MS.gene48454.t1 | MTR_3g101020 | 65.405 | 185 | 39 | 2 | 260 | 444 | 1 | 160 | 6.68e-77 | 237 |
| MS.gene48454.t1 | MTR_3g101150 | 62.025 | 158 | 54 | 2 | 292 | 443 | 1 | 158 | 5.96e-60 | 193 |
| MS.gene48454.t1 | MTR_3g111150 | 58.192 | 177 | 48 | 2 | 64 | 240 | 3 | 153 | 2.09e-59 | 192 |
| MS.gene48454.t1 | MTR_3g102870 | 57.143 | 161 | 67 | 1 | 249 | 407 | 1 | 161 | 1.22e-56 | 185 |
| MS.gene48454.t1 | MTR_3g100990 | 63.281 | 128 | 44 | 2 | 59 | 186 | 5 | 129 | 1.34e-42 | 157 |
| MS.gene48454.t1 | MTR_4g093550 | 62.353 | 85 | 30 | 1 | 61 | 145 | 7 | 89 | 1.46e-24 | 97.4 |
| MS.gene48454.t1 | MTR_6g046890 | 60.526 | 76 | 27 | 1 | 78 | 153 | 15 | 87 | 1.15e-18 | 82.4 |
| MS.gene48454.t1 | MTR_3g101140 | 63.077 | 65 | 23 | 1 | 381 | 444 | 52 | 116 | 2.68e-17 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48454.t1 | AT1G47710 | 52.228 | 404 | 185 | 4 | 43 | 442 | 18 | 417 | 4.12e-149 | 431 |
| MS.gene48454.t1 | AT1G47710 | 53.403 | 382 | 173 | 3 | 65 | 442 | 10 | 390 | 1.45e-148 | 428 |
| MS.gene48454.t1 | AT3G45220 | 47.949 | 390 | 183 | 7 | 64 | 441 | 9 | 390 | 1.73e-122 | 362 |
| MS.gene48454.t1 | AT2G25240 | 49.091 | 385 | 178 | 9 | 64 | 441 | 9 | 382 | 1.09e-117 | 349 |
| MS.gene48454.t1 | AT2G26390 | 46.512 | 387 | 189 | 6 | 64 | 441 | 9 | 386 | 4.41e-114 | 340 |
| MS.gene48454.t1 | AT1G62170 | 44.173 | 369 | 175 | 5 | 83 | 443 | 88 | 433 | 8.10e-103 | 313 |
| MS.gene48454.t1 | AT2G14540 | 43.873 | 408 | 197 | 7 | 40 | 441 | 16 | 397 | 9.93e-102 | 309 |
| MS.gene48454.t1 | AT1G64030 | 43.152 | 387 | 193 | 7 | 61 | 441 | 6 | 371 | 5.45e-96 | 294 |
| MS.gene48454.t1 | AT1G62170 | 40.547 | 402 | 175 | 6 | 83 | 443 | 88 | 466 | 9.41e-96 | 296 |
| MS.gene48454.t1 | AT2G35580 | 44.236 | 373 | 179 | 9 | 79 | 441 | 18 | 371 | 2.17e-94 | 289 |
| MS.gene48454.t1 | AT1G64010 | 47.222 | 216 | 92 | 4 | 227 | 441 | 1 | 195 | 7.89e-63 | 202 |
| MS.gene48454.t1 | AT1G64010 | 46.766 | 201 | 85 | 4 | 242 | 441 | 2 | 181 | 9.92e-56 | 183 |
| MS.gene48454.t1 | AT1G62160 | 42.308 | 182 | 82 | 4 | 264 | 443 | 60 | 220 | 4.21e-38 | 138 |
| MS.gene48454.t1 | AT1G63280 | 56.522 | 115 | 46 | 2 | 186 | 298 | 8 | 120 | 4.56e-36 | 129 |
| MS.gene48454.t1 | AT1G51330 | 51.351 | 111 | 51 | 2 | 185 | 292 | 30 | 140 | 3.98e-26 | 105 |
| MS.gene48454.t1 | AT1G64020 | 30.894 | 123 | 82 | 3 | 56 | 177 | 1 | 121 | 5.86e-14 | 68.9 |
Find 98 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAACTTTGCTTGAGAAAT+TGG | 0.152643 | 3.1:+80213341 | MS.gene48454:CDS |
| ATTAGACACAATTTGTTTAA+AGG | 0.202108 | 3.1:-80212774 | None:intergenic |
| TGGCCAAAGAAGTGAATTTA+TGG | 0.229209 | 3.1:+80213001 | MS.gene48454:CDS |
| TTATCTTCGCCTTGCTTATA+AGG | 0.250540 | 3.1:-80213270 | None:intergenic |
| AGCCCATAAATTCACTTCTT+TGG | 0.263090 | 3.1:-80213004 | None:intergenic |
| CTTGTTCCGATGAGATTCTT+TGG | 0.294656 | 3.1:-80212513 | None:intergenic |
| CCAAGGTTCAATATTTCATT+TGG | 0.296966 | 3.1:+80213432 | MS.gene48454:CDS |
| CAGGTGCTCAATCCTCTTGC+TGG | 0.306550 | 3.1:+80213741 | MS.gene48454:CDS |
| TGCGGTGGCTGCAACAGCTT+CGG | 0.337942 | 3.1:-80213601 | None:intergenic |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.344851 | 3.1:+80213315 | MS.gene48454:CDS |
| GCTGTTGCAGCCACCGCAGC+TGG | 0.353831 | 3.1:+80213606 | MS.gene48454:CDS |
| TTCTTTGGAGAAAAGATGTT+TGG | 0.357142 | 3.1:-80212498 | None:intergenic |
| CAATGGAGGTCTGACTAAAA+TGG | 0.358287 | 3.1:+80213506 | MS.gene48454:CDS |
| GAGTGGAGGTAGGCGACTTT+AGG | 0.363509 | 3.1:+80213406 | MS.gene48454:CDS |
| GGCGAAGGAGTTGAGTTGAT+TGG | 0.379770 | 3.1:-80212645 | None:intergenic |
| ATGGTGGTTGTTGGCGGATT+CGG | 0.388527 | 3.1:-80212453 | None:intergenic |
| ACTGGAACAATCATCTTTGT+TGG | 0.397026 | 3.1:+80213717 | MS.gene48454:CDS |
| GCCAATTTCTCAAGCAAAGT+TGG | 0.399047 | 3.1:-80213342 | None:intergenic |
| ATATCGCTCGGAGTTGTATT+CGG | 0.407795 | 3.1:-80212383 | None:intergenic |
| AAAGGAAGGCTGAAAAGAAA+TGG | 0.408734 | 3.1:-80212756 | None:intergenic |
| CGCCTACCTCCACTCTATCA+TGG | 0.421816 | 3.1:-80213398 | None:intergenic |
| GATGTTGAGTGGGATCGATT+TGG | 0.424463 | 3.1:-80212406 | None:intergenic |
| AATGACGGAGACGAGCTTAG+AGG | 0.426551 | 3.1:-80212666 | None:intergenic |
| CAAATGAAATATTGAACCTT+GGG | 0.426942 | 3.1:-80213431 | None:intergenic |
| TGTTCCCTTCATGACTAGTA+AGG | 0.429633 | 3.1:+80213200 | MS.gene48454:CDS |
| AACAATCATCTTTGTTGGAC+AGG | 0.442686 | 3.1:+80213722 | MS.gene48454:CDS |
| TCTCTAATCATAAACAAGAA+AGG | 0.443816 | 3.1:-80213687 | None:intergenic |
| TTTATTGACGTAAATGAAGA+AGG | 0.449783 | 3.1:+80213576 | MS.gene48454:CDS |
| TAACCGAGTTTCCATTCAAA+AGG | 0.458909 | 3.1:-80213176 | None:intergenic |
| AACGCTGCTATGGTGGTTGT+TGG | 0.459988 | 3.1:-80212462 | None:intergenic |
| GTTGATTGGTGGAGTTGGAT+TGG | 0.462431 | 3.1:-80212631 | None:intergenic |
| CTCTAATCATAAACAAGAAA+GGG | 0.468439 | 3.1:-80213686 | None:intergenic |
| CGATGATGCTTAGTACAACT+TGG | 0.469268 | 3.1:-80212562 | None:intergenic |
| CTCATAGACGGTGCTCCCGC+TGG | 0.470650 | 3.1:+80212689 | MS.gene48454:CDS |
| GGCCAAAGAAGTGAATTTAT+GGG | 0.474970 | 3.1:+80213002 | MS.gene48454:CDS |
| GTTGAGTTGATTGGTGGAGT+TGG | 0.477821 | 3.1:-80212636 | None:intergenic |
| GCCTACCTCCACTCTATCAT+GGG | 0.479650 | 3.1:-80213397 | None:intergenic |
| ATGATTAGAGAAGAATTGAC+TGG | 0.486911 | 3.1:+80213699 | MS.gene48454:CDS |
| TTCTTCCAAATGCAAAAGAT+GGG | 0.486946 | 3.1:+80213316 | MS.gene48454:CDS |
| CACGAAGAGCGTGAAGTAGC+AGG | 0.491414 | 3.1:-80212312 | None:intergenic |
| CTTCGCCTTGCTTATAAGGA+AGG | 0.494680 | 3.1:-80213266 | None:intergenic |
| GAGAGACGAGGTCCGCCAGC+GGG | 0.496406 | 3.1:-80212704 | None:intergenic |
| GACACAATTTGTTTAAAGGA+AGG | 0.503508 | 3.1:-80212770 | None:intergenic |
| AGGTGCTCAATCCTCTTGCT+GGG | 0.503743 | 3.1:+80213742 | MS.gene48454:CDS |
| ATCATCGCTGCTGGCTCTGA+CGG | 0.503940 | 3.1:+80212578 | MS.gene48454:CDS |
| TGCATTAGCAATGATTAGCC+TGG | 0.510550 | 3.1:-80213088 | None:intergenic |
| GTACTAAGCATCATCGCTGC+TGG | 0.512015 | 3.1:+80212569 | MS.gene48454:CDS |
| CCAAATGAAATATTGAACCT+TGG | 0.513068 | 3.1:-80213432 | None:intergenic |
| AAAGAAGAATGAAGTTATCT+CGG | 0.515590 | 3.1:+80212273 | None:intergenic |
| AAAGATGTTTGGCGATGGTG+AGG | 0.524270 | 3.1:-80212487 | None:intergenic |
| GGAGACGAGCTTAGAGGCGA+AGG | 0.528835 | 3.1:-80212660 | None:intergenic |
| GCTGCTATGGTGGTTGTTGG+CGG | 0.529517 | 3.1:-80212459 | None:intergenic |
| GCTACAAAGTCTAGTCGAGT+TGG | 0.531637 | 3.1:-80213657 | None:intergenic |
| CTTGGCCTTCCTTATAAGCA+AGG | 0.532609 | 3.1:+80213261 | MS.gene48454:CDS |
| AGTACAACTTGGAGCGAAAG+TGG | 0.534886 | 3.1:-80212551 | None:intergenic |
| TTCTGTTGATTTCAAGAACA+AGG | 0.537281 | 3.1:+80212817 | MS.gene48454:CDS |
| TCTGATATGCTGAAGGAGCT+AGG | 0.542423 | 3.1:+80213465 | MS.gene48454:CDS |
| GATTGGTGGAGTTGGATTGG+AGG | 0.545051 | 3.1:-80212628 | None:intergenic |
| TGGGCTGCAAAAGAGACAAA+TGG | 0.552308 | 3.1:+80213021 | MS.gene48454:CDS |
| AAGTAGCAGGCAAGGTCGAT+TGG | 0.554084 | 3.1:-80212299 | None:intergenic |
| GAAGGAGTTGAGTTGATTGG+TGG | 0.564630 | 3.1:-80212642 | None:intergenic |
| CGCTAAAATCACCCAGCAAG+AGG | 0.568564 | 3.1:-80213753 | None:intergenic |
| GAGAAGCTGCTGATGTTGAG+TGG | 0.568947 | 3.1:-80212417 | None:intergenic |
| AGTAATCACTAGCAGTGCCA+TGG | 0.569246 | 3.1:+80213629 | MS.gene48454:CDS |
| AGAGAGACGAGGTCCGCCAG+CGG | 0.569477 | 3.1:-80212705 | None:intergenic |
| GCTAATGCACTATACTTCAA+AGG | 0.571328 | 3.1:+80213102 | MS.gene48454:CDS |
| GTCAGACCTCCATTGGTGAA+AGG | 0.571927 | 3.1:-80213498 | None:intergenic |
| TGGTGAGGGAAACGCTGCTA+TGG | 0.575851 | 3.1:-80212472 | None:intergenic |
| AGAGCGTGAAGTAGCAGGCA+AGG | 0.577102 | 3.1:-80212307 | None:intergenic |
| TGTTGGCGGATTCGGATCGA+AGG | 0.581182 | 3.1:-80212445 | None:intergenic |
| GTAATCACTAGCAGTGCCAT+GGG | 0.582810 | 3.1:+80213630 | MS.gene48454:CDS |
| CACTATACTTCAAAGGAGTG+TGG | 0.589270 | 3.1:+80213109 | MS.gene48454:CDS |
| GTCTCCGTCATTCTCATAGA+CGG | 0.593703 | 3.1:+80212677 | MS.gene48454:CDS |
| AAGATGTTTGGCGATGGTGA+GGG | 0.596429 | 3.1:-80212486 | None:intergenic |
| TGAAACTTCTGATATGCTGA+AGG | 0.602682 | 3.1:+80213458 | MS.gene48454:CDS |
| TGGTTAAGTTGTCAACCGAC+TGG | 0.605277 | 3.1:-80213068 | None:intergenic |
| ATAGACGGTGCTCCCGCTGG+CGG | 0.613026 | 3.1:+80212692 | MS.gene48454:CDS |
| AGTGATTACTCCAGCTGCGG+TGG | 0.615727 | 3.1:-80213616 | None:intergenic |
| GTCAAGAAGCTGTTGTTGTG+TGG | 0.616691 | 3.1:-80212603 | None:intergenic |
| AGAAGCTGCTGATGTTGAGT+GGG | 0.617202 | 3.1:-80212416 | None:intergenic |
| CAAGCTTCCCCATGATAGAG+TGG | 0.617775 | 3.1:+80213389 | MS.gene48454:CDS |
| GGATCGATTTGGATATCGCT+CGG | 0.618610 | 3.1:-80212395 | None:intergenic |
| TAGGCGACTTTAGGATCCCA+AGG | 0.619037 | 3.1:+80213415 | MS.gene48454:CDS |
| AGAACTTCTTCCGCACCAGT+CGG | 0.626705 | 3.1:+80213053 | MS.gene48454:CDS |
| GGTTTGAAAGGCAAGTGAAG+TGG | 0.629370 | 3.1:+80212981 | MS.gene48454:intron |
| TAATCATAAACAAGAAAGGG+TGG | 0.640706 | 3.1:-80213683 | None:intergenic |
| TAGTCGAGTTGGAAAACCCA+TGG | 0.647144 | 3.1:-80213646 | None:intergenic |
| AGTCGGTTGACAACTTAACC+AGG | 0.649790 | 3.1:+80213070 | MS.gene48454:CDS |
| TGAGGGAAACGCTGCTATGG+TGG | 0.653513 | 3.1:-80212469 | None:intergenic |
| GGAGAAAAGATGTTTGGCGA+TGG | 0.656877 | 3.1:-80212492 | None:intergenic |
| GCTAGTGATTACTCCAGCTG+CGG | 0.657209 | 3.1:-80213619 | None:intergenic |
| CCCCATGATAGAGTGGAGGT+AGG | 0.681139 | 3.1:+80213396 | MS.gene48454:CDS |
| AGCACCGTCTATGAGAATGA+CGG | 0.688198 | 3.1:-80212681 | None:intergenic |
| GCTTCCCCATGATAGAGTGG+AGG | 0.691360 | 3.1:+80213392 | MS.gene48454:CDS |
| TATGCTGAAGGAGCTAGGCG+TGG | 0.693931 | 3.1:+80213470 | MS.gene48454:CDS |
| CCTACCTCCACTCTATCATG+GGG | 0.704050 | 3.1:-80213396 | None:intergenic |
| AAGTTGTCAACCGACTGGTG+CGG | 0.705181 | 3.1:-80213063 | None:intergenic |
| CCATCGACAAAAGAGAGACG+AGG | 0.708769 | 3.1:-80212716 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAAATTTTAACAAAATCA+GGG | - | chr3.1:80212894-80212913 | None:intergenic | 15.0% |
| !!! | ATTGATTTTGAATTTTGATA+TGG | + | chr3.1:80212960-80212979 | MS.gene48454:intron | 15.0% |
| !!! | TACAAAATTTTAACAAAATC+AGG | - | chr3.1:80212895-80212914 | None:intergenic | 15.0% |
| !!! | ATTAGACACAATTTGTTTAA+AGG | - | chr3.1:80212777-80212796 | None:intergenic | 20.0% |
| !!! | GAATGATTTTAGAAATACAT+AGG | - | chr3.1:80213548-80213567 | None:intergenic | 20.0% |
| ! | CAAATGAAATATTGAACCTT+GGG | - | chr3.1:80213434-80213453 | None:intergenic | 25.0% |
| ! | CTCTAATCATAAACAAGAAA+GGG | - | chr3.1:80213689-80213708 | None:intergenic | 25.0% |
| ! | TCTCTAATCATAAACAAGAA+AGG | - | chr3.1:80213690-80213709 | None:intergenic | 25.0% |
| ! | TTTATTGACGTAAATGAAGA+AGG | + | chr3.1:80213576-80213595 | MS.gene48454:CDS | 25.0% |
| !! | TATGATTTTCACCTTTTGAA+TGG | + | chr3.1:80213165-80213184 | MS.gene48454:CDS | 25.0% |
| !!! | GAATTTTGATATGGTTTGAA+AGG | + | chr3.1:80212969-80212988 | MS.gene48454:intron | 25.0% |
| !!! | TTCGATGATTTTAAAGTTCT+TGG | + | chr3.1:80213243-80213262 | MS.gene48454:CDS | 25.0% |
| ATGATTAGAGAAGAATTGAC+TGG | + | chr3.1:80213699-80213718 | MS.gene48454:CDS | 30.0% | |
| CCAAATGAAATATTGAACCT+TGG | - | chr3.1:80213435-80213454 | None:intergenic | 30.0% | |
| CCAAGGTTCAATATTTCATT+TGG | + | chr3.1:80213432-80213451 | MS.gene48454:CDS | 30.0% | |
| TAATCATAAACAAGAAAGGG+TGG | - | chr3.1:80213686-80213705 | None:intergenic | 30.0% | |
| TTCTTCCAAATGCAAAAGAT+GGG | + | chr3.1:80213316-80213335 | MS.gene48454:CDS | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | + | chr3.1:80213315-80213334 | MS.gene48454:CDS | 30.0% | |
| ! | GACACAATTTGTTTAAAGGA+AGG | - | chr3.1:80212773-80212792 | None:intergenic | 30.0% |
| ! | GTATTCGGTATCATGATTTT+TGG | - | chr3.1:80212371-80212390 | None:intergenic | 30.0% |
| ! | TTCTTTGGAGAAAAGATGTT+TGG | - | chr3.1:80212501-80212520 | None:intergenic | 30.0% |
| ! | TTTTCCTTACTAGTCATGAA+GGG | - | chr3.1:80213207-80213226 | None:intergenic | 30.0% |
| ! | TTTTCTCCAAAGAATCTCAT+CGG | + | chr3.1:80212507-80212526 | MS.gene48454:CDS | 30.0% |
| ! | TTTTTCCTTACTAGTCATGA+AGG | - | chr3.1:80213208-80213227 | None:intergenic | 30.0% |
| !! | TTCTGTTGATTTCAAGAACA+AGG | + | chr3.1:80212817-80212836 | MS.gene48454:CDS | 30.0% |
| AAAGGAAGGCTGAAAAGAAA+TGG | - | chr3.1:80212759-80212778 | None:intergenic | 35.0% | |
| AACAATCATCTTTGTTGGAC+AGG | + | chr3.1:80213722-80213741 | MS.gene48454:CDS | 35.0% | |
| ACTGGAACAATCATCTTTGT+TGG | + | chr3.1:80213717-80213736 | MS.gene48454:CDS | 35.0% | |
| AGCCCATAAATTCACTTCTT+TGG | - | chr3.1:80213007-80213026 | None:intergenic | 35.0% | |
| GCTAATGCACTATACTTCAA+AGG | + | chr3.1:80213102-80213121 | MS.gene48454:CDS | 35.0% | |
| GGCCAAAGAAGTGAATTTAT+GGG | + | chr3.1:80213002-80213021 | MS.gene48454:CDS | 35.0% | |
| TAACCGAGTTTCCATTCAAA+AGG | - | chr3.1:80213179-80213198 | None:intergenic | 35.0% | |
| TGAAACTTCTGATATGCTGA+AGG | + | chr3.1:80213458-80213477 | MS.gene48454:CDS | 35.0% | |
| TGGCCAAAGAAGTGAATTTA+TGG | + | chr3.1:80213001-80213020 | MS.gene48454:CDS | 35.0% | |
| TTATCTTCGCCTTGCTTATA+AGG | - | chr3.1:80213273-80213292 | None:intergenic | 35.0% | |
| ! | TCACCTTTTGAATGGAAACT+CGG | + | chr3.1:80213173-80213192 | MS.gene48454:CDS | 35.0% |
| ATATCGCTCGGAGTTGTATT+CGG | - | chr3.1:80212386-80212405 | None:intergenic | 40.0% | |
| CAATGGAGGTCTGACTAAAA+TGG | + | chr3.1:80213506-80213525 | MS.gene48454:CDS | 40.0% | |
| CACTATACTTCAAAGGAGTG+TGG | + | chr3.1:80213109-80213128 | MS.gene48454:CDS | 40.0% | |
| CGATGATGCTTAGTACAACT+TGG | - | chr3.1:80212565-80212584 | None:intergenic | 40.0% | |
| CTTGTTCCGATGAGATTCTT+TGG | - | chr3.1:80212516-80212535 | None:intergenic | 40.0% | |
| GCCAACTTTGCTTGAGAAAT+TGG | + | chr3.1:80213341-80213360 | MS.gene48454:CDS | 40.0% | |
| GCCAATTTCTCAAGCAAAGT+TGG | - | chr3.1:80213345-80213364 | None:intergenic | 40.0% | |
| TGTTCCCTTCATGACTAGTA+AGG | + | chr3.1:80213200-80213219 | MS.gene48454:CDS | 40.0% | |
| ! | GTTTTACCTTTCACCAATGG+AGG | + | chr3.1:80213492-80213511 | MS.gene48454:CDS | 40.0% |
| ! | TGCATTAGCAATGATTAGCC+TGG | - | chr3.1:80213091-80213110 | None:intergenic | 40.0% |
| !! | CATTTTAGTCAGACCTCCAT+TGG | - | chr3.1:80213508-80213527 | None:intergenic | 40.0% |
| !! | GTGGTTTTACCTTTCACCAA+TGG | + | chr3.1:80213489-80213508 | MS.gene48454:CDS | 40.0% |
| AAAGATGTTTGGCGATGGTG+AGG | - | chr3.1:80212490-80212509 | None:intergenic | 45.0% | |
| AAGATGTTTGGCGATGGTGA+GGG | - | chr3.1:80212489-80212508 | None:intergenic | 45.0% | |
| AGAAGCTGCTGATGTTGAGT+GGG | - | chr3.1:80212419-80212438 | None:intergenic | 45.0% | |
| AGCACCGTCTATGAGAATGA+CGG | - | chr3.1:80212684-80212703 | None:intergenic | 45.0% | |
| AGTAATCACTAGCAGTGCCA+TGG | + | chr3.1:80213629-80213648 | MS.gene48454:CDS | 45.0% | |
| AGTACAACTTGGAGCGAAAG+TGG | - | chr3.1:80212554-80212573 | None:intergenic | 45.0% | |
| AGTCGGTTGACAACTTAACC+AGG | + | chr3.1:80213070-80213089 | MS.gene48454:CDS | 45.0% | |
| CTTCGCCTTGCTTATAAGGA+AGG | - | chr3.1:80213269-80213288 | None:intergenic | 45.0% | |
| GATGTTGAGTGGGATCGATT+TGG | - | chr3.1:80212409-80212428 | None:intergenic | 45.0% | |
| GCTACAAAGTCTAGTCGAGT+TGG | - | chr3.1:80213660-80213679 | None:intergenic | 45.0% | |
| GGAGAAAAGATGTTTGGCGA+TGG | - | chr3.1:80212495-80212514 | None:intergenic | 45.0% | |
| GGTTTGAAAGGCAAGTGAAG+TGG | + | chr3.1:80212981-80213000 | MS.gene48454:intron | 45.0% | |
| GTAATCACTAGCAGTGCCAT+GGG | + | chr3.1:80213630-80213649 | MS.gene48454:CDS | 45.0% | |
| GTCAAGAAGCTGTTGTTGTG+TGG | - | chr3.1:80212606-80212625 | None:intergenic | 45.0% | |
| GTCTCCGTCATTCTCATAGA+CGG | + | chr3.1:80212677-80212696 | MS.gene48454:CDS | 45.0% | |
| GTTGATTGGTGGAGTTGGAT+TGG | - | chr3.1:80212634-80212653 | None:intergenic | 45.0% | |
| TCTGATATGCTGAAGGAGCT+AGG | + | chr3.1:80213465-80213484 | MS.gene48454:CDS | 45.0% | |
| TGGGCTGCAAAAGAGACAAA+TGG | + | chr3.1:80213021-80213040 | MS.gene48454:CDS | 45.0% | |
| ! | CTCTTTTGTCGATGGTGTGT+GGG | + | chr3.1:80212724-80212743 | MS.gene48454:CDS | 45.0% |
| ! | CTTGGCCTTCCTTATAAGCA+AGG | + | chr3.1:80213261-80213280 | MS.gene48454:CDS | 45.0% |
| ! | TCTCTTTTGTCGATGGTGTG+TGG | + | chr3.1:80212723-80212742 | MS.gene48454:CDS | 45.0% |
| ! | TGGTTAAGTTGTCAACCGAC+TGG | - | chr3.1:80213071-80213090 | None:intergenic | 45.0% |
| !! | GAAGGAGTTGAGTTGATTGG+TGG | - | chr3.1:80212645-80212664 | None:intergenic | 45.0% |
| !! | GGATCGATTTGGATATCGCT+CGG | - | chr3.1:80212398-80212417 | None:intergenic | 45.0% |
| !! | GTTGAGTTGATTGGTGGAGT+TGG | - | chr3.1:80212639-80212658 | None:intergenic | 45.0% |
| !! | TAGTCGAGTTGGAAAACCCA+TGG | - | chr3.1:80213649-80213668 | None:intergenic | 45.0% |
| AACGCTGCTATGGTGGTTGT+TGG | - | chr3.1:80212465-80212484 | None:intergenic | 50.0% | |
| AAGTAGCAGGCAAGGTCGAT+TGG | - | chr3.1:80212302-80212321 | None:intergenic | 50.0% | |
| AAGTTGTCAACCGACTGGTG+CGG | - | chr3.1:80213066-80213085 | None:intergenic | 50.0% | |
| AGAACTTCTTCCGCACCAGT+CGG | + | chr3.1:80213053-80213072 | MS.gene48454:CDS | 50.0% | |
| AGGTGCTCAATCCTCTTGCT+GGG | + | chr3.1:80213742-80213761 | MS.gene48454:CDS | 50.0% | |
| CAAGCTTCCCCATGATAGAG+TGG | + | chr3.1:80213389-80213408 | MS.gene48454:CDS | 50.0% | |
| CCATCGACAAAAGAGAGACG+AGG | - | chr3.1:80212719-80212738 | None:intergenic | 50.0% | |
| CCTACCTCCACTCTATCATG+GGG | - | chr3.1:80213399-80213418 | None:intergenic | 50.0% | |
| GAGAAGCTGCTGATGTTGAG+TGG | - | chr3.1:80212420-80212439 | None:intergenic | 50.0% | |
| GCCTACCTCCACTCTATCAT+GGG | - | chr3.1:80213400-80213419 | None:intergenic | 50.0% | |
| GCTAGTGATTACTCCAGCTG+CGG | - | chr3.1:80213622-80213641 | None:intergenic | 50.0% | |
| GTACTAAGCATCATCGCTGC+TGG | + | chr3.1:80212569-80212588 | MS.gene48454:CDS | 50.0% | |
| GTCAGACCTCCATTGGTGAA+AGG | - | chr3.1:80213501-80213520 | None:intergenic | 50.0% | |
| ! | AATGACGGAGACGAGCTTAG+AGG | - | chr3.1:80212669-80212688 | None:intergenic | 50.0% |
| ! | CCTCGTCTCTCTTTTGTCGA+TGG | + | chr3.1:80212716-80212735 | MS.gene48454:CDS | 50.0% |
| ! | GATTGGTGGAGTTGGATTGG+AGG | - | chr3.1:80212631-80212650 | None:intergenic | 50.0% |
| ! | GGCAGCCCATCTTTTGCATT+TGG | - | chr3.1:80213324-80213343 | None:intergenic | 50.0% |
| ! | TTTTGTCGATGGTGTGTGGG+TGG | + | chr3.1:80212727-80212746 | MS.gene48454:CDS | 50.0% |
| !! | ATGGTGGTTGTTGGCGGATT+CGG | - | chr3.1:80212456-80212475 | None:intergenic | 50.0% |
| !! | GGCGAAGGAGTTGAGTTGAT+TGG | - | chr3.1:80212648-80212667 | None:intergenic | 50.0% |
| !! | TAGGCGACTTTAGGATCCCA+AGG | + | chr3.1:80213415-80213434 | MS.gene48454:CDS | 50.0% |
| AGAGCGTGAAGTAGCAGGCA+AGG | - | chr3.1:80212310-80212329 | None:intergenic | 55.0% | |
| AGTGATTACTCCAGCTGCGG+TGG | - | chr3.1:80213619-80213638 | None:intergenic | 55.0% | |
| CAGGTGCTCAATCCTCTTGC+TGG | + | chr3.1:80213741-80213760 | MS.gene48454:CDS | 55.0% | |
| CCCCATGATAGAGTGGAGGT+AGG | + | chr3.1:80213396-80213415 | MS.gene48454:CDS | 55.0% | |
| CGCCTACCTCCACTCTATCA+TGG | - | chr3.1:80213401-80213420 | None:intergenic | 55.0% | |
| GAGTGGAGGTAGGCGACTTT+AGG | + | chr3.1:80213406-80213425 | MS.gene48454:CDS | 55.0% | |
| GCTGCTATGGTGGTTGTTGG+CGG | - | chr3.1:80212462-80212481 | None:intergenic | 55.0% | |
| GCTTCCCCATGATAGAGTGG+AGG | + | chr3.1:80213392-80213411 | MS.gene48454:CDS | 55.0% | |
| TATGCTGAAGGAGCTAGGCG+TGG | + | chr3.1:80213470-80213489 | MS.gene48454:CDS | 55.0% | |
| TGAGGGAAACGCTGCTATGG+TGG | - | chr3.1:80212472-80212491 | None:intergenic | 55.0% | |
| TGGTGAGGGAAACGCTGCTA+TGG | - | chr3.1:80212475-80212494 | None:intergenic | 55.0% | |
| ! | CACGAAGAGCGTGAAGTAGC+AGG | - | chr3.1:80212315-80212334 | None:intergenic | 55.0% |
| !! | ATCATCGCTGCTGGCTCTGA+CGG | + | chr3.1:80212578-80212597 | MS.gene48454:CDS | 55.0% |
| !! | TGTTGGCGGATTCGGATCGA+AGG | - | chr3.1:80212448-80212467 | None:intergenic | 55.0% |
| GGAGACGAGCTTAGAGGCGA+AGG | - | chr3.1:80212663-80212682 | None:intergenic | 60.0% | |
| TGCGGTGGCTGCAACAGCTT+CGG | - | chr3.1:80213604-80213623 | None:intergenic | 60.0% | |
| AGAGAGACGAGGTCCGCCAG+CGG | - | chr3.1:80212708-80212727 | None:intergenic | 65.0% | |
| ATAGACGGTGCTCCCGCTGG+CGG | + | chr3.1:80212692-80212711 | MS.gene48454:CDS | 65.0% | |
| CTCATAGACGGTGCTCCCGC+TGG | + | chr3.1:80212689-80212708 | MS.gene48454:CDS | 65.0% | |
| GAGAGACGAGGTCCGCCAGC+GGG | - | chr3.1:80212707-80212726 | None:intergenic | 70.0% | |
| GCTGTTGCAGCCACCGCAGC+TGG | + | chr3.1:80213606-80213625 | MS.gene48454:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 80212281 | 80213767 | 80212281 | ID=MS.gene48454 |
| chr3.1 | mRNA | 80212281 | 80213767 | 80212281 | ID=MS.gene48454.t1;Parent=MS.gene48454 |
| chr3.1 | exon | 80212281 | 80212838 | 80212281 | ID=MS.gene48454.t1.exon1;Parent=MS.gene48454.t1 |
| chr3.1 | CDS | 80212281 | 80212838 | 80212281 | ID=cds.MS.gene48454.t1;Parent=MS.gene48454.t1 |
| chr3.1 | exon | 80212991 | 80213767 | 80212991 | ID=MS.gene48454.t1.exon2;Parent=MS.gene48454.t1 |
| chr3.1 | CDS | 80212991 | 80213767 | 80212991 | ID=cds.MS.gene48454.t1;Parent=MS.gene48454.t1 |
| Gene Sequence |
| Protein sequence |
