AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene48457

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48457.t1 MTR_3g101030 66.988 415 85 6 3 365 15 429 0.0 539
MS.gene48457.t1 MTR_3g101010 70.026 387 79 4 14 365 5 389 0.0 530
MS.gene48457.t1 MTR_4g045707 65.473 391 94 5 11 365 3 388 1.90e-175 493
MS.gene48457.t1 MTR_3g018740 67.013 385 89 4 14 363 5 386 6.30e-174 489
MS.gene48457.t1 MTR_3g101050 68.312 385 89 8 7 364 19 397 1.25e-170 481
MS.gene48457.t1 MTR_8g027395 62.694 386 105 4 14 365 17 397 1.48e-168 476
MS.gene48457.t1 MTR_8g027420 62.435 386 95 5 14 365 6 375 1.65e-161 457
MS.gene48457.t1 MTR_3g101130 59.398 399 118 4 1 365 1 389 1.68e-160 455
MS.gene48457.t1 MTR_3g101180 61.616 396 109 5 11 363 3 398 4.94e-160 454
MS.gene48457.t1 MTR_8g461160 58.355 389 125 3 12 363 4 392 1.35e-158 451
MS.gene48457.t1 MTR_7g451890 57.214 402 135 3 1 365 1 402 1.87e-157 448
MS.gene48457.t1 MTR_7g050750 57.576 396 131 3 7 365 1 396 5.29e-156 444
MS.gene48457.t1 MTR_7g047780 56.716 402 137 3 1 365 1 402 3.90e-155 442
MS.gene48457.t1 MTR_4g088525 61.853 367 99 5 33 364 8 368 7.21e-154 437
MS.gene48457.t1 MTR_7g050810 57.215 395 126 4 11 365 13 404 6.93e-153 436
MS.gene48457.t1 MTR_3g048000 59.067 386 102 6 13 363 26 390 2.32e-149 427
MS.gene48457.t1 MTR_2g045980 58.549 386 120 6 14 363 5 386 8.27e-149 426
MS.gene48457.t1 MTR_2g046030 57.513 386 124 6 14 363 5 386 1.27e-145 417
MS.gene48457.t1 MTR_4g088535 57.963 383 106 6 12 360 5 366 1.29e-145 417
MS.gene48457.t1 MTR_3g101200 58.981 373 134 6 5 363 23 390 7.09e-145 416
MS.gene48457.t1 MTR_3g100995 76.190 252 60 0 114 365 13 264 3.31e-144 409
MS.gene48457.t1 MTR_3g015620 54.780 387 114 6 14 363 16 378 1.54e-131 381
MS.gene48457.t1 MTR_3g018747 67.954 259 66 2 108 363 9 253 6.54e-121 350
MS.gene48457.t1 MTR_3g102920 52.507 379 107 6 22 363 66 408 1.84e-118 349
MS.gene48457.t1 MTR_3g015760 62.094 277 102 3 89 363 4 279 2.26e-109 321
MS.gene48457.t1 MTR_3g101190 50.276 362 84 4 38 365 13 312 2.13e-108 320
MS.gene48457.t1 MTR_3g100010 51.543 324 73 4 37 295 38 342 2.51e-98 295
MS.gene48457.t1 MTR_7g050830 50.325 308 90 3 20 275 22 318 7.99e-96 288
MS.gene48457.t1 MTR_3g100520 64.706 221 62 3 149 365 1 209 8.19e-95 281
MS.gene48457.t1 MTR_3g111160 67.943 209 63 2 160 365 13 220 7.51e-94 280
MS.gene48457.t1 MTR_3g101110 48.968 339 80 6 8 339 28 280 1.87e-93 281
MS.gene48457.t1 MTR_3g099970 70.769 195 40 2 108 301 20 198 7.53e-90 268
MS.gene48457.t1 MTR_2g046410 62.136 206 69 4 165 363 144 347 1.62e-80 250
MS.gene48457.t1 MTR_3g101020 65.761 184 39 1 182 365 1 160 2.44e-80 243
MS.gene48457.t1 MTR_3g114310 39.348 399 185 11 16 365 20 410 9.37e-80 250
MS.gene48457.t1 MTR_3g101150 64.331 157 49 2 214 363 1 157 1.34e-63 200
MS.gene48457.t1 MTR_3g102870 59.006 161 59 2 173 326 3 163 9.60e-60 191
MS.gene48457.t1 MTR_3g111150 62.092 153 48 2 18 162 3 153 1.14e-57 185
MS.gene48457.t1 MTR_3g100990 50.382 131 31 2 14 112 5 133 4.69e-29 117
MS.gene48457.t1 MTR_3g101140 50.000 122 46 3 246 365 8 116 2.06e-24 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48457.t1 AT1G47710 50.262 382 152 5 19 363 10 390 4.58e-131 380
MS.gene48457.t1 AT1G47710 50.262 382 152 5 19 363 37 417 2.18e-130 380
MS.gene48457.t1 AT3G45220 46.173 392 162 7 14 362 5 390 1.39e-116 344
MS.gene48457.t1 AT2G25240 47.656 384 160 10 14 362 5 382 2.46e-112 333
MS.gene48457.t1 AT2G26390 46.373 386 166 7 14 362 5 386 6.46e-112 332
MS.gene48457.t1 AT1G64030 40.731 383 169 6 18 362 9 371 1.92e-89 274
MS.gene48457.t1 AT2G14540 42.147 382 163 5 18 362 37 397 1.64e-87 270
MS.gene48457.t1 AT2G35580 43.210 324 159 5 43 362 69 371 2.27e-85 263
MS.gene48457.t1 AT1G62170 38.859 368 163 5 37 364 88 433 7.21e-84 261
MS.gene48457.t1 AT1G62170 35.661 401 163 6 37 364 88 466 4.92e-77 245
MS.gene48457.t1 AT1G64010 49.767 215 87 4 149 362 1 195 2.77e-65 206
MS.gene48457.t1 AT1G64010 49.000 200 81 4 164 362 2 181 1.31e-57 186
MS.gene48457.t1 AT1G63280 58.261 115 44 2 108 220 8 120 3.89e-38 133
MS.gene48457.t1 AT1G62160 39.224 232 113 4 138 364 12 220 2.58e-35 129
MS.gene48457.t1 AT1G51330 53.763 93 43 0 107 199 30 122 6.95e-25 100

Find 88 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATGCACTGTACTTTAA+AGG 0.146562 3.1:+80225479 MS.gene48457:CDS
TGATTAATAAAGTGAATTTA+TGG 0.211117 3.1:+80225378 MS.gene48457:CDS
CTTCTTCTTGCTGGTCATAA+AGG 0.249810 3.1:-80225582 None:intergenic
GGAAACGTTGGTTTGGTTAA+TGG 0.276967 3.1:-80224828 None:intergenic
GTCAGACCTCCATTAGTAAA+AGG 0.277817 3.1:-80225875 None:intergenic
TTATCTTTGCCTTGCTTATA+CGG 0.281478 3.1:-80225647 None:intergenic
GAAAGACTTGTGAAATATAT+TGG 0.284781 3.1:-80225933 None:intergenic
TCCAGAGATGCCGCTCCTTT+TGG 0.285901 3.1:+80225054 MS.gene48457:intron
AAGTGGAGGCAGGTGACTTT+AGG 0.304242 3.1:+80225783 MS.gene48457:CDS
AATAAACTGCTTCTTCTTGC+TGG 0.330367 3.1:-80225591 None:intergenic
AAAATCATAGTCTTTCGTTT+TGG 0.334440 3.1:-80225528 None:intergenic
CATCATAGCTGCTGGATCTC+AGG 0.345380 3.1:+80224940 MS.gene48457:CDS
TTTGGAAGCATCAAACTTAT+CGG 0.355840 3.1:-80225510 None:intergenic
TAATGGAGGTCTGACTAAAA+TGG 0.358053 3.1:+80225883 MS.gene48457:CDS
CAGGTGCTCAATCCTCTTGC+TGG 0.367631 3.1:+80226115 MS.gene48457:CDS
GCCAACTTTGCTTGAGAAGT+TGG 0.373728 3.1:+80225718 MS.gene48457:CDS
GATTAATAAAGTGAATTTAT+GGG 0.381941 3.1:+80225379 MS.gene48457:CDS
ACCGGAACTATCGTCTTTGT+TGG 0.385310 3.1:+80226091 MS.gene48457:CDS
TTGTTCAACCCACACACTAT+TGG 0.385574 3.1:-80225097 None:intergenic
CAAACTTCCATTTGTTAAAG+TGG 0.390173 3.1:+80225766 MS.gene48457:CDS
TGAAGGAAGGTTGAAGGGTA+AGG 0.396066 3.1:-80225122 None:intergenic
TTCTTCTTGCTGGTCATAAA+GGG 0.398726 3.1:-80225581 None:intergenic
CAAATGAAATATTGAACCTT+GGG 0.407101 3.1:-80225808 None:intergenic
GGTTTGGTTAATGGCAGATT+GGG 0.427282 3.1:-80224819 None:intergenic
TCTGATATGCTGAAGGAGTT+AGG 0.433201 3.1:+80225842 MS.gene48457:CDS
GTGTTGTATCAACTCAGTTT+CGG 0.441820 3.1:-80225744 None:intergenic
AACTATCGTCTTTGTTGGAC+AGG 0.446501 3.1:+80226096 MS.gene48457:CDS
CTCTGTTGCCAATAGTGTGT+GGG 0.456798 3.1:+80225089 MS.gene48457:CDS
TTCATTGAAGTAAATGAAGA+AGG 0.457204 3.1:+80225953 MS.gene48457:CDS
TTAAAGAAATTCTTCGTCAA+GGG 0.460026 3.1:+80225426 MS.gene48457:CDS
AGTAGACACAGTTTCTTTGA+AGG 0.465284 3.1:-80225139 None:intergenic
TCTCTGATCATAAATAAGAA+AGG 0.465391 3.1:-80226061 None:intergenic
TTTCTTTGAAGGAAGGTTGA+AGG 0.470029 3.1:-80225128 None:intergenic
GGCAGCCCGTCTTTAGCATC+CGG 0.471060 3.1:-80225698 None:intergenic
TGCATTTGAAAAGATGAGTC+TGG 0.471389 3.1:-80225465 None:intergenic
TGGTTTGGTTAATGGCAGAT+TGG 0.472763 3.1:-80224820 None:intergenic
CCTGCCTCCACTTTAACAAA+TGG 0.473222 3.1:-80225773 None:intergenic
CTGTAGCAGTCGGCAGCTCC+AGG 0.473744 3.1:+80226002 MS.gene48457:CDS
AAAAGATGAGTCTGGTTAAG+TGG 0.476434 3.1:-80225457 None:intergenic
GCCAACTTCTCAAGCAAAGT+TGG 0.480685 3.1:-80225719 None:intergenic
TCAAATGAAATATTGAACCT+TGG 0.481541 3.1:-80225809 None:intergenic
GTGCTCAGCATCATAGCTGC+TGG 0.482388 3.1:+80224932 MS.gene48457:CDS
TCCAACAAAGACGATAGTTC+CGG 0.484061 3.1:-80226092 None:intergenic
CCATTTGTTAAAGTGGAGGC+AGG 0.484875 3.1:+80225773 MS.gene48457:CDS
CTATGATGCTGAGCACAACT+TGG 0.485939 3.1:-80224925 None:intergenic
GAAGGAAGGTTGAAGGGTAA+GGG 0.486148 3.1:-80225121 None:intergenic
TTTCTTCCGGATGCTAAAGA+CGG 0.486545 3.1:+80225692 MS.gene48457:CDS
CTCTGATCATAAATAAGAAA+GGG 0.502614 3.1:-80226060 None:intergenic
ATTAAAGAAATTCTTCGTCA+AGG 0.506528 3.1:+80225425 MS.gene48457:CDS
TGGTGAGGGAAACGTTGGTT+TGG 0.507864 3.1:-80224835 None:intergenic
TTCTTCCGGATGCTAAAGAC+GGG 0.514689 3.1:+80225693 MS.gene48457:CDS
GGTTAATGGCAGATTGGGAT+CGG 0.516446 3.1:-80224814 None:intergenic
TATTCGAGTTGGAACAGTCC+TGG 0.525373 3.1:-80226020 None:intergenic
GAAATATATTGGAAATACAA+AGG 0.530250 3.1:-80225922 None:intergenic
TTCTTTGAAGGAAGGTTGAA+GGG 0.532323 3.1:-80225127 None:intergenic
ATGATCAGAGAAGATTTGAC+CGG 0.538023 3.1:+80226073 MS.gene48457:CDS
GACACAGTTTCTTTGAAGGA+AGG 0.540665 3.1:-80225135 None:intergenic
CGCTAAGATCATCCAGCAAG+AGG 0.550703 3.1:-80226127 None:intergenic
ATCATAGCTGCTGGATCTCA+GGG 0.553300 3.1:+80224941 MS.gene48457:CDS
TTCCGTTGATTTCAAGAACA+AGG 0.553793 3.1:+80225182 MS.gene48457:CDS
CATAAATAAGAAAGGGTGGT+CGG 0.555285 3.1:-80226053 None:intergenic
GGCGATGGTGAGGGAAACGT+TGG 0.556591 3.1:-80224840 None:intergenic
GAGAGGCGAGGACCACCAAA+AGG 0.560441 3.1:-80225069 None:intergenic
TGGGCTGAGAAAGAGACAAA+TGG 0.565306 3.1:+80225398 MS.gene48457:CDS
AGAAATTCTTCGTCAAGGGT+CGG 0.568942 3.1:+80225430 MS.gene48457:CDS
TCTCAATGGCAGCTCAGTCA+AGG 0.571104 3.1:+80225556 MS.gene48457:CDS
TACCTTGTTCTTGAAATCAA+CGG 0.574876 3.1:-80225184 None:intergenic
GCTACAAAGTCTATTCGAGT+TGG 0.586921 3.1:-80226031 None:intergenic
CAGGTGACTTTAGGATCCCA+AGG 0.590666 3.1:+80225792 MS.gene48457:CDS
AGAAGGCACTGAGGCTGCTG+CGG 0.593682 3.1:+80225970 MS.gene48457:CDS
TGAAACTTCTGATATGCTGA+AGG 0.594035 3.1:+80225835 MS.gene48457:CDS
CTTGGTCTTCCGTATAAGCA+AGG 0.596297 3.1:+80225638 MS.gene48457:CDS
CACTGTACTTTAAAGGAGCG+TGG 0.601309 3.1:+80225486 MS.gene48457:CDS
ACTTCCATTTGTTAAAGTGG+AGG 0.604072 3.1:+80225769 MS.gene48457:CDS
TCTCTGTTGCCAATAGTGTG+TGG 0.608134 3.1:+80225088 MS.gene48457:CDS
ATAGATGTTTGGCGATGGTG+AGG 0.612058 3.1:-80224850 None:intergenic
GCGAGGACCACCAAAAGGAG+CGG 0.615404 3.1:-80225064 None:intergenic
TGACTGAGCTGCCATTGAGA+AGG 0.622914 3.1:-80225553 None:intergenic
AGCACAACTTGGATTGAGAG+TGG 0.642348 3.1:-80224914 None:intergenic
GTCACTATAGCTGTAGCAGT+CGG 0.642888 3.1:+80225992 MS.gene48457:CDS
TAGATGTTTGGCGATGGTGA+GGG 0.644133 3.1:-80224849 None:intergenic
TGTGAATAGATGTTTGGCGA+TGG 0.645801 3.1:-80224855 None:intergenic
TGATCATAAATAAGAAAGGG+TGG 0.652484 3.1:-80226057 None:intergenic
TAATGGCAGATTGGGATCGG+AGG 0.667018 3.1:-80224811 None:intergenic
TATGCTGAAGGAGTTAGGCG+TGG 0.677943 3.1:+80225847 MS.gene48457:CDS
ACACACTATTGGCAACAGAG+AGG 0.733111 3.1:-80225086 None:intergenic
AGTAAATGAAGAAGGCACTG+AGG 0.752407 3.1:+80225961 MS.gene48457:CDS
CTATTGGCAACAGAGAGGCG+AGG 0.753182 3.1:-80225081 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGATTGTTAAATTGATA+TGG + chr3.1:80225337-80225356 MS.gene48457:intron 15.0%
!! GATTAATAAAGTGAATTTAT+GGG + chr3.1:80225379-80225398 MS.gene48457:CDS 15.0%
!! TGATTAATAAAGTGAATTTA+TGG + chr3.1:80225378-80225397 MS.gene48457:CDS 15.0%
!!! GAATTTAAATTTTTAACAGA+TGG - chr3.1:80225271-80225290 None:intergenic 15.0%
!!! TTAAATTGATATGGTTTTAA+AGG + chr3.1:80225346-80225365 MS.gene48457:intron 15.0%
!! GAAATATATTGGAAATACAA+AGG - chr3.1:80225925-80225944 None:intergenic 20.0%
!!! ATAACACTATATTTTTGTCT+TGG - chr3.1:80224892-80224911 None:intergenic 20.0%
!!! TTAAATTTTTAACAGATGGA+TGG - chr3.1:80225267-80225286 None:intergenic 20.0%
! AAGAAAATTGTTGTGAAAAG+AGG - chr3.1:80225227-80225246 None:intergenic 25.0%
! AGAAAATTGTTGTGAAAAGA+GGG - chr3.1:80225226-80225245 None:intergenic 25.0%
! ATTAAAGAAATTCTTCGTCA+AGG + chr3.1:80225425-80225444 MS.gene48457:CDS 25.0%
! CAAATGAAATATTGAACCTT+GGG - chr3.1:80225811-80225830 None:intergenic 25.0%
! CTCTGATCATAAATAAGAAA+GGG - chr3.1:80226063-80226082 None:intergenic 25.0%
! GAAAGACTTGTGAAATATAT+TGG - chr3.1:80225936-80225955 None:intergenic 25.0%
! TCAAATGAAATATTGAACCT+TGG - chr3.1:80225812-80225831 None:intergenic 25.0%
! TCTCTGATCATAAATAAGAA+AGG - chr3.1:80226064-80226083 None:intergenic 25.0%
! TTAAAGAAATTCTTCGTCAA+GGG + chr3.1:80225426-80225445 MS.gene48457:CDS 25.0%
! TTCATTGAAGTAAATGAAGA+AGG + chr3.1:80225953-80225972 MS.gene48457:CDS 25.0%
!! AAAATCATAGTCTTTCGTTT+TGG - chr3.1:80225531-80225550 None:intergenic 25.0%
!! TTCTTTTGTGAATAGATGTT+TGG - chr3.1:80224864-80224883 None:intergenic 25.0%
!!! TTTGATGGTTTTAAAGTTCT+TGG + chr3.1:80225620-80225639 MS.gene48457:CDS 25.0%
GAAGAAGTTTAGATGATCAA+TGG - chr3.1:80225012-80225031 None:intergenic 30.0%
TACCTTGTTCTTGAAATCAA+CGG - chr3.1:80225187-80225206 None:intergenic 30.0%
TCAAATGCACTGTACTTTAA+AGG + chr3.1:80225479-80225498 MS.gene48457:CDS 30.0%
TGATCATAAATAAGAAAGGG+TGG - chr3.1:80226060-80226079 None:intergenic 30.0%
TTATCTTTGCCTTGCTTATA+CGG - chr3.1:80225650-80225669 None:intergenic 30.0%
! CAAACTTCCATTTGTTAAAG+TGG + chr3.1:80225766-80225785 MS.gene48457:CDS 30.0%
! CAGTTTATTAGAGCTTTTGA+TGG + chr3.1:80225605-80225624 MS.gene48457:CDS 30.0%
! GTTTTACCTTTTACTAATGG+AGG + chr3.1:80225869-80225888 MS.gene48457:CDS 30.0%
! TATGATTTTCACCTTCTCAA+TGG + chr3.1:80225542-80225561 MS.gene48457:CDS 30.0%
!! GTGGTTTTACCTTTTACTAA+TGG + chr3.1:80225866-80225885 MS.gene48457:CDS 30.0%
!! TTTGGAAGCATCAAACTTAT+CGG - chr3.1:80225513-80225532 None:intergenic 30.0%
!!! CTCTATGTACTTTTTTCTTC+CGG + chr3.1:80225679-80225698 MS.gene48457:CDS 30.0%
AAAAGATGAGTCTGGTTAAG+TGG - chr3.1:80225460-80225479 None:intergenic 35.0%
AATAAACTGCTTCTTCTTGC+TGG - chr3.1:80225594-80225613 None:intergenic 35.0%
AGTAGACACAGTTTCTTTGA+AGG - chr3.1:80225142-80225161 None:intergenic 35.0%
ATGATCAGAGAAGATTTGAC+CGG + chr3.1:80226073-80226092 MS.gene48457:CDS 35.0%
CATAAATAAGAAAGGGTGGT+CGG - chr3.1:80226056-80226075 None:intergenic 35.0%
GTGTTGTATCAACTCAGTTT+CGG - chr3.1:80225747-80225766 None:intergenic 35.0%
TAATGGAGGTCTGACTAAAA+TGG + chr3.1:80225883-80225902 MS.gene48457:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG + chr3.1:80225835-80225854 MS.gene48457:CDS 35.0%
TGCATTTGAAAAGATGAGTC+TGG - chr3.1:80225468-80225487 None:intergenic 35.0%
TTCTTCTTGCTGGTCATAAA+GGG - chr3.1:80225584-80225603 None:intergenic 35.0%
! ACTTCCATTTGTTAAAGTGG+AGG + chr3.1:80225769-80225788 MS.gene48457:CDS 35.0%
! TTCTTTGAAGGAAGGTTGAA+GGG - chr3.1:80225130-80225149 None:intergenic 35.0%
! TTTCTTTGAAGGAAGGTTGA+AGG - chr3.1:80225131-80225150 None:intergenic 35.0%
!! TTCCGTTGATTTCAAGAACA+AGG + chr3.1:80225182-80225201 MS.gene48457:CDS 35.0%
AACTATCGTCTTTGTTGGAC+AGG + chr3.1:80226096-80226115 MS.gene48457:CDS 40.0%
AGAAATTCTTCGTCAAGGGT+CGG + chr3.1:80225430-80225449 MS.gene48457:CDS 40.0%
CTTCTTCTTGCTGGTCATAA+AGG - chr3.1:80225585-80225604 None:intergenic 40.0%
GCTACAAAGTCTATTCGAGT+TGG - chr3.1:80226034-80226053 None:intergenic 40.0%
GTCAGACCTCCATTAGTAAA+AGG - chr3.1:80225878-80225897 None:intergenic 40.0%
TCCAACAAAGACGATAGTTC+CGG - chr3.1:80226095-80226114 None:intergenic 40.0%
TCTGATATGCTGAAGGAGTT+AGG + chr3.1:80225842-80225861 MS.gene48457:CDS 40.0%
TGTGAATAGATGTTTGGCGA+TGG - chr3.1:80224858-80224877 None:intergenic 40.0%
TTGTTCAACCCACACACTAT+TGG - chr3.1:80225100-80225119 None:intergenic 40.0%
TTTCTTCCGGATGCTAAAGA+CGG + chr3.1:80225692-80225711 MS.gene48457:CDS 40.0%
! AGAAGTTGTTGTTGAGTGAG+TGG - chr3.1:80224969-80224988 None:intergenic 40.0%
! GACACAGTTTCTTTGAAGGA+AGG - chr3.1:80225138-80225157 None:intergenic 40.0%
! GATCAATGGATTTAGAGCCA+AGG - chr3.1:80224998-80225017 None:intergenic 40.0%
! GGTTTGGTTAATGGCAGATT+GGG - chr3.1:80224822-80224841 None:intergenic 40.0%
!! AGTAAATGAAGAAGGCACTG+AGG + chr3.1:80225961-80225980 MS.gene48457:CDS 40.0%
!! GGAAACGTTGGTTTGGTTAA+TGG - chr3.1:80224831-80224850 None:intergenic 40.0%
!! TGGTTTGGTTAATGGCAGAT+TGG - chr3.1:80224823-80224842 None:intergenic 40.0%
ACACACTATTGGCAACAGAG+AGG - chr3.1:80225089-80225108 None:intergenic 45.0%
ACCGGAACTATCGTCTTTGT+TGG + chr3.1:80226091-80226110 MS.gene48457:CDS 45.0%
AGCACAACTTGGATTGAGAG+TGG - chr3.1:80224917-80224936 None:intergenic 45.0%
ATAGATGTTTGGCGATGGTG+AGG - chr3.1:80224853-80224872 None:intergenic 45.0%
ATCATAGCTGCTGGATCTCA+GGG + chr3.1:80224941-80224960 MS.gene48457:CDS 45.0%
CAACAACTTCTCGACTTCCT+TGG + chr3.1:80224978-80224997 MS.gene48457:intron 45.0%
CCTGCCTCCACTTTAACAAA+TGG - chr3.1:80225776-80225795 None:intergenic 45.0%
CTATGATGCTGAGCACAACT+TGG - chr3.1:80224928-80224947 None:intergenic 45.0%
CTCTGTTGCCAATAGTGTGT+GGG + chr3.1:80225089-80225108 MS.gene48457:CDS 45.0%
GAAGGAAGGTTGAAGGGTAA+GGG - chr3.1:80225124-80225143 None:intergenic 45.0%
GCCAACTTCTCAAGCAAAGT+TGG - chr3.1:80225722-80225741 None:intergenic 45.0%
GCCAACTTTGCTTGAGAAGT+TGG + chr3.1:80225718-80225737 MS.gene48457:CDS 45.0%
GGTTAATGGCAGATTGGGAT+CGG - chr3.1:80224817-80224836 None:intergenic 45.0%
GTCACTATAGCTGTAGCAGT+CGG + chr3.1:80225992-80226011 MS.gene48457:CDS 45.0%
TAGATGTTTGGCGATGGTGA+GGG - chr3.1:80224852-80224871 None:intergenic 45.0%
TCTCTGTTGCCAATAGTGTG+TGG + chr3.1:80225088-80225107 MS.gene48457:CDS 45.0%
TGAAGGAAGGTTGAAGGGTA+AGG - chr3.1:80225125-80225144 None:intergenic 45.0%
TGGGCTGAGAAAGAGACAAA+TGG + chr3.1:80225398-80225417 MS.gene48457:CDS 45.0%
TTCTTCCGGATGCTAAAGAC+GGG + chr3.1:80225693-80225712 MS.gene48457:CDS 45.0%
! CACTGTACTTTAAAGGAGCG+TGG + chr3.1:80225486-80225505 MS.gene48457:CDS 45.0%
! CCATTTGTTAAAGTGGAGGC+AGG + chr3.1:80225773-80225792 MS.gene48457:CDS 45.0%
! CTTGGTCTTCCGTATAAGCA+AGG + chr3.1:80225638-80225657 MS.gene48457:CDS 45.0%
!! TATTCGAGTTGGAACAGTCC+TGG - chr3.1:80226023-80226042 None:intergenic 45.0%
AAGTGGAGGCAGGTGACTTT+AGG + chr3.1:80225783-80225802 MS.gene48457:CDS 50.0%
CATCATAGCTGCTGGATCTC+AGG + chr3.1:80224940-80224959 MS.gene48457:CDS 50.0%
TAATGGCAGATTGGGATCGG+AGG - chr3.1:80224814-80224833 None:intergenic 50.0%
TATGCTGAAGGAGTTAGGCG+TGG + chr3.1:80225847-80225866 MS.gene48457:CDS 50.0%
TCTCAATGGCAGCTCAGTCA+AGG + chr3.1:80225556-80225575 MS.gene48457:CDS 50.0%
TGACTGAGCTGCCATTGAGA+AGG - chr3.1:80225556-80225575 None:intergenic 50.0%
! TGGTGAGGGAAACGTTGGTT+TGG - chr3.1:80224838-80224857 None:intergenic 50.0%
!! CAGGTGACTTTAGGATCCCA+AGG + chr3.1:80225792-80225811 MS.gene48457:CDS 50.0%
ACCAAAAGGAGCGGCATCTC+TGG - chr3.1:80225058-80225077 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG + chr3.1:80226115-80226134 MS.gene48457:CDS 55.0%
CTATTGGCAACAGAGAGGCG+AGG - chr3.1:80225084-80225103 None:intergenic 55.0%
GTGCTCAGCATCATAGCTGC+TGG + chr3.1:80224932-80224951 MS.gene48457:CDS 55.0%
! AGAGATGCCGCTCCTTTTGG+TGG + chr3.1:80225057-80225076 MS.gene48457:intron 55.0%
! TCCAGAGATGCCGCTCCTTT+TGG + chr3.1:80225054-80225073 MS.gene48457:intron 55.0%
GAGAGGCGAGGACCACCAAA+AGG - chr3.1:80225072-80225091 None:intergenic 60.0%
GCGAGGACCACCAAAAGGAG+CGG - chr3.1:80225067-80225086 None:intergenic 60.0%
GGAGCGGCATCTCTGGATGA+TGG - chr3.1:80225051-80225070 None:intergenic 60.0%
GGCAGCCCGTCTTTAGCATC+CGG - chr3.1:80225701-80225720 None:intergenic 60.0%
GGCGATGGTGAGGGAAACGT+TGG - chr3.1:80224843-80224862 None:intergenic 60.0%
!! AGAAGGCACTGAGGCTGCTG+CGG + chr3.1:80225970-80225989 MS.gene48457:CDS 60.0%
CTGTAGCAGTCGGCAGCTCC+AGG + chr3.1:80226002-80226021 MS.gene48457:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 80224782 80226141 80224782 ID=MS.gene48457
chr3.1 mRNA 80224782 80226141 80224782 ID=MS.gene48457.t1;Parent=MS.gene48457
chr3.1 exon 80224782 80224962 80224782 ID=MS.gene48457.t1.exon1;Parent=MS.gene48457.t1
chr3.1 CDS 80224782 80224962 80224782 ID=cds.MS.gene48457.t1;Parent=MS.gene48457.t1
chr3.1 exon 80225061 80225203 80225061 ID=MS.gene48457.t1.exon2;Parent=MS.gene48457.t1
chr3.1 CDS 80225061 80225203 80225061 ID=cds.MS.gene48457.t1;Parent=MS.gene48457.t1
chr3.1 exon 80225368 80226141 80225368 ID=MS.gene48457.t1.exon3;Parent=MS.gene48457.t1
chr3.1 CDS 80225368 80226141 80225368 ID=cds.MS.gene48457.t1;Parent=MS.gene48457.t1
Gene Sequence

>MS.gene48457

ATGAATGAACATCGTCAGCTTCTTGACTTCCTCCGATCCCAATCTGCCATTAACCAAACCAACGTTTCCCTCACCATCGCCAAACATCTATTCACAAAAGAATCTCACCAAGACAAAAATATAGTGTTATCGCCACTCTCAATCCAAGTTGTGCTCAGCATCATAGCTGCTGGATCTCAGGGTGCCACTCACTCAACAACAACTTCTCGACTTCCTTGGCTCTAAATCCATTGATCATCTAAACTTCTTCGTCTCTCAACTCGTTTCCATCATCCAGAGATGCCGCTCCTTTTGGTGGTCCTCGCCTCTCTGTTGCCAATAGTGTGTGGGTTGAACAAACCCTTACCCTTCAACCTTCCTTCAAAGAAACTGTGTCTACTGATTATAAAGCGACTTTGTCTTCCGTTGATTTCAAGAACAAGGTATGTATTGTACATATCTCCCTCTTTTCACAACAATTTTCTTTTCTTTACTGTTTTCTACCATCCATCTGTTAAAAATTTAAATTCTATTATTGCAATACTTGTGAAAAGAACTCAACTTATCTATCTGCATAATTGATTGTTAAATTGATATGGTTTTAAAGGCTGTTGAAGTGATTAATAAAGTGAATTTATGGGCTGAGAAAGAGACAAATGGTCTTATTAAAGAAATTCTTCGTCAAGGGTCGGTTGACCACTTAACCAGACTCATCTTTTCAAATGCACTGTACTTTAAAGGAGCGTGGACCGATAAGTTTGATGCTTCCAAAACGAAAGACTATGATTTTCACCTTCTCAATGGCAGCTCAGTCAAGGTTCCCTTTATGACCAGCAAGAAGAAGCAGTTTATTAGAGCTTTTGATGGTTTTAAAGTTCTTGGTCTTCCGTATAAGCAAGGCAAAGATAAGCGTCGATTCTCTATGTACTTTTTTCTTCCGGATGCTAAAGACGGGCTGCCAACTTTGCTTGAGAAGTTGGCTTCCGAAACTGAGTTGATACAACACAAACTTCCATTTGTTAAAGTGGAGGCAGGTGACTTTAGGATCCCAAGGTTCAATATTTCATTTGAACTTGAAACTTCTGATATGCTGAAGGAGTTAGGCGTGGTTTTACCTTTTACTAATGGAGGTCTGACTAAAATGGTGATGAGTACTCAAAACCTTTGTATTTCCAATATATTTCACAAGTCTTTCATTGAAGTAAATGAAGAAGGCACTGAGGCTGCTGCGGTCACTATAGCTGTAGCAGTCGGCAGCTCCAGGACTGTTCCAACTCGAATAGACTTTGTAGCCGACCACCCTTTCTTATTTATGATCAGAGAAGATTTGACCGGAACTATCGTCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGATGA
Protein sequence

>MS.gene48457.t1

MNEHRQLLDFLRSQSAINQTNVSLTIAKHLFTKESHQDKNIVLSPLSIQVVLSIIAAGSQDAAPFGGPRLSVANSVWVEQTLTLQPSFKETVSTDYKATLSSVDFKNKAVEVINKVNLWAEKETNGLIKEILRQGSVDHLTRLIFSNALYFKGAWTDKFDASKTKDYDFHLLNGSSVKVPFMTSKKKQFIRAFDGFKVLGLPYKQGKDKRRFSMYFFLPDAKDGLPTLLEKLASETELIQHKLPFVKVEAGDFRIPRFNISFELETSDMLKELGVVLPFTNGGLTKMVMSTQNLCISNIFHKSFIEVNEEGTEAAAVTIAVAVGSSRTVPTRIDFVADHPFLFMIREDLTGTIVFVGQVLNPLAG