Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48464.t1 | XP_003602984.1 | 93.6 | 391 | 25 | 0 | 1 | 391 | 1 | 391 | 1.30E-204 | 722.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48464.t1 | Q9S7T8 | 50.1 | 389 | 186 | 4 | 5 | 387 | 4 | 390 | 9.7e-105 | 381.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48464.t1 | G7J5R9 | 93.6 | 391 | 25 | 0 | 1 | 391 | 1 | 391 | 9.1e-205 | 722.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene48464 | MS.gene045585 | PPI |
| MS.gene006610 | MS.gene48464 | PPI |
| MS.gene031697 | MS.gene48464 | PPI |
| MS.gene48464 | MS.gene065944 | PPI |
| MS.gene065945 | MS.gene48464 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48464.t1 | MTR_3g101130 | 93.606 | 391 | 25 | 0 | 1 | 391 | 1 | 391 | 0.0 | 744 |
| MS.gene48464.t1 | MTR_3g101180 | 64.912 | 399 | 129 | 4 | 1 | 388 | 1 | 399 | 2.36e-178 | 502 |
| MS.gene48464.t1 | MTR_7g050750 | 63.333 | 390 | 138 | 2 | 5 | 389 | 7 | 396 | 8.98e-172 | 485 |
| MS.gene48464.t1 | MTR_8g461160 | 62.755 | 392 | 141 | 2 | 1 | 387 | 1 | 392 | 2.73e-170 | 481 |
| MS.gene48464.t1 | MTR_3g101010 | 63.239 | 389 | 136 | 3 | 5 | 389 | 4 | 389 | 6.69e-167 | 473 |
| MS.gene48464.t1 | MTR_7g050810 | 62.564 | 390 | 139 | 3 | 6 | 389 | 16 | 404 | 1.27e-165 | 470 |
| MS.gene48464.t1 | MTR_3g018740 | 62.755 | 392 | 135 | 5 | 1 | 387 | 1 | 386 | 1.77e-165 | 469 |
| MS.gene48464.t1 | MTR_3g101200 | 63.590 | 390 | 116 | 4 | 1 | 388 | 26 | 391 | 4.68e-165 | 468 |
| MS.gene48464.t1 | MTR_7g451890 | 60.411 | 389 | 149 | 2 | 6 | 389 | 14 | 402 | 7.94e-163 | 462 |
| MS.gene48464.t1 | MTR_4g045707 | 59.796 | 393 | 149 | 3 | 1 | 389 | 1 | 388 | 3.04e-160 | 456 |
| MS.gene48464.t1 | MTR_8g027395 | 60.152 | 394 | 144 | 4 | 1 | 389 | 12 | 397 | 5.76e-160 | 455 |
| MS.gene48464.t1 | MTR_7g047780 | 59.640 | 389 | 152 | 2 | 6 | 389 | 14 | 402 | 3.13e-158 | 451 |
| MS.gene48464.t1 | MTR_4g088525 | 63.085 | 363 | 125 | 3 | 30 | 388 | 11 | 368 | 1.64e-157 | 448 |
| MS.gene48464.t1 | MTR_3g101030 | 57.761 | 393 | 147 | 3 | 15 | 389 | 38 | 429 | 2.70e-153 | 439 |
| MS.gene48464.t1 | MTR_8g027420 | 58.779 | 393 | 140 | 5 | 1 | 389 | 1 | 375 | 6.44e-153 | 436 |
| MS.gene48464.t1 | MTR_2g045980 | 57.033 | 391 | 152 | 5 | 5 | 387 | 4 | 386 | 3.37e-148 | 425 |
| MS.gene48464.t1 | MTR_2g046030 | 56.777 | 391 | 153 | 6 | 5 | 387 | 4 | 386 | 4.14e-148 | 425 |
| MS.gene48464.t1 | MTR_3g048000 | 57.106 | 387 | 138 | 5 | 7 | 388 | 28 | 391 | 2.31e-145 | 418 |
| MS.gene48464.t1 | MTR_4g088535 | 55.980 | 393 | 145 | 6 | 1 | 388 | 1 | 370 | 2.29e-139 | 402 |
| MS.gene48464.t1 | MTR_3g101050 | 56.072 | 387 | 145 | 8 | 7 | 387 | 29 | 396 | 2.49e-134 | 390 |
| MS.gene48464.t1 | MTR_3g015620 | 55.784 | 389 | 139 | 6 | 6 | 387 | 16 | 378 | 1.79e-131 | 382 |
| MS.gene48464.t1 | MTR_3g102920 | 53.807 | 394 | 139 | 5 | 1 | 388 | 53 | 409 | 5.42e-131 | 382 |
| MS.gene48464.t1 | MTR_3g101190 | 52.342 | 363 | 105 | 4 | 31 | 389 | 14 | 312 | 1.97e-116 | 341 |
| MS.gene48464.t1 | MTR_3g100995 | 64.822 | 253 | 85 | 2 | 139 | 389 | 14 | 264 | 4.13e-115 | 336 |
| MS.gene48464.t1 | MTR_7g050830 | 54.140 | 314 | 113 | 2 | 6 | 299 | 16 | 318 | 1.63e-106 | 317 |
| MS.gene48464.t1 | MTR_3g015760 | 61.069 | 262 | 91 | 4 | 132 | 387 | 23 | 279 | 1.86e-97 | 292 |
| MS.gene48464.t1 | MTR_3g018747 | 58.238 | 261 | 88 | 3 | 132 | 387 | 9 | 253 | 3.65e-97 | 290 |
| MS.gene48464.t1 | MTR_3g100010 | 48.726 | 314 | 113 | 3 | 31 | 311 | 40 | 338 | 1.55e-96 | 292 |
| MS.gene48464.t1 | MTR_3g100520 | 58.744 | 223 | 72 | 4 | 173 | 389 | 1 | 209 | 7.45e-85 | 257 |
| MS.gene48464.t1 | MTR_3g111160 | 61.860 | 215 | 74 | 2 | 180 | 389 | 9 | 220 | 3.51e-83 | 253 |
| MS.gene48464.t1 | MTR_3g114310 | 41.470 | 381 | 198 | 10 | 28 | 389 | 36 | 410 | 1.96e-81 | 256 |
| MS.gene48464.t1 | MTR_3g101110 | 54.167 | 240 | 77 | 3 | 135 | 367 | 71 | 284 | 3.58e-76 | 238 |
| MS.gene48464.t1 | MTR_2g046410 | 58.454 | 207 | 75 | 3 | 189 | 387 | 144 | 347 | 8.65e-76 | 239 |
| MS.gene48464.t1 | MTR_3g099970 | 59.487 | 195 | 60 | 2 | 132 | 323 | 20 | 198 | 4.87e-75 | 231 |
| MS.gene48464.t1 | MTR_3g101020 | 57.609 | 184 | 54 | 2 | 206 | 389 | 1 | 160 | 1.40e-63 | 201 |
| MS.gene48464.t1 | MTR_3g101150 | 63.190 | 163 | 43 | 3 | 238 | 388 | 1 | 158 | 1.77e-62 | 198 |
| MS.gene48464.t1 | MTR_3g102870 | 60.544 | 147 | 54 | 1 | 198 | 340 | 4 | 150 | 5.82e-54 | 176 |
| MS.gene48464.t1 | MTR_3g111150 | 48.045 | 179 | 67 | 3 | 8 | 186 | 1 | 153 | 1.49e-47 | 160 |
| MS.gene48464.t1 | MTR_3g100990 | 61.240 | 129 | 48 | 1 | 4 | 132 | 3 | 129 | 9.07e-42 | 154 |
| MS.gene48464.t1 | MTR_3g101140 | 69.565 | 69 | 21 | 0 | 321 | 389 | 48 | 116 | 1.81e-24 | 97.4 |
| MS.gene48464.t1 | MTR_4g093550 | 51.648 | 91 | 42 | 1 | 1 | 91 | 1 | 89 | 1.91e-19 | 82.8 |
| MS.gene48464.t1 | MTR_6g046890 | 62.121 | 66 | 25 | 0 | 23 | 88 | 14 | 79 | 5.16e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48464.t1 | AT1G47710 | 50.129 | 389 | 186 | 4 | 5 | 387 | 4 | 390 | 1.01e-133 | 388 |
| MS.gene48464.t1 | AT1G47710 | 50.129 | 389 | 186 | 4 | 5 | 387 | 31 | 417 | 5.17e-133 | 387 |
| MS.gene48464.t1 | AT3G45220 | 44.221 | 398 | 193 | 6 | 6 | 386 | 5 | 390 | 3.08e-112 | 333 |
| MS.gene48464.t1 | AT2G25240 | 45.244 | 389 | 194 | 7 | 6 | 386 | 5 | 382 | 3.52e-110 | 328 |
| MS.gene48464.t1 | AT2G26390 | 42.602 | 392 | 204 | 6 | 6 | 386 | 5 | 386 | 2.20e-103 | 311 |
| MS.gene48464.t1 | AT1G62170 | 42.033 | 364 | 185 | 4 | 29 | 386 | 88 | 431 | 3.17e-94 | 289 |
| MS.gene48464.t1 | AT2G14540 | 43.767 | 361 | 182 | 3 | 29 | 386 | 55 | 397 | 1.16e-93 | 286 |
| MS.gene48464.t1 | AT1G64030 | 41.645 | 389 | 199 | 7 | 5 | 386 | 4 | 371 | 4.59e-91 | 279 |
| MS.gene48464.t1 | AT1G62170 | 38.539 | 397 | 185 | 5 | 29 | 386 | 88 | 464 | 2.26e-87 | 272 |
| MS.gene48464.t1 | AT2G35580 | 38.817 | 389 | 210 | 9 | 5 | 386 | 4 | 371 | 3.39e-84 | 261 |
| MS.gene48464.t1 | AT1G64010 | 45.116 | 215 | 97 | 4 | 173 | 386 | 1 | 195 | 4.14e-60 | 193 |
| MS.gene48464.t1 | AT1G64010 | 44.500 | 200 | 90 | 4 | 188 | 386 | 2 | 181 | 7.11e-53 | 174 |
| MS.gene48464.t1 | AT1G62160 | 39.086 | 197 | 95 | 5 | 195 | 386 | 42 | 218 | 1.58e-33 | 125 |
| MS.gene48464.t1 | AT1G63280 | 50.000 | 118 | 55 | 2 | 129 | 244 | 5 | 120 | 6.05e-32 | 117 |
| MS.gene48464.t1 | AT1G51330 | 43.750 | 112 | 60 | 2 | 130 | 238 | 29 | 140 | 4.27e-25 | 101 |
| MS.gene48464.t1 | AT1G64020 | 38.889 | 108 | 62 | 4 | 15 | 121 | 14 | 118 | 9.73e-13 | 65.1 |
Find 74 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCACTATACTTTAA+AGG | 0.155210 | 3.1:+80313690 | MS.gene48464:CDS |
| CCACGTTTCAAAATTTCTTC+TGG | 0.223557 | 3.1:+80314020 | MS.gene48464:CDS |
| ATATCATTGCCTTTCTTATA+AGG | 0.269050 | 3.1:-80313858 | None:intergenic |
| TTCATTGAAGTAAATGAAAA+AGG | 0.281273 | 3.1:+80314158 | MS.gene48464:CDS |
| AAATGGCAGACTCTCCGATT+TGG | 0.300193 | 3.1:+80314111 | MS.gene48464:CDS |
| GGTGATGTTCATAGCATTCT+TGG | 0.325055 | 3.1:-80313124 | None:intergenic |
| GGAAAAGAGGTGAGAGGATA+AGG | 0.329026 | 3.1:-80313307 | None:intergenic |
| AATGGCAGACTCTCCGATTT+GGG | 0.357023 | 3.1:+80314112 | MS.gene48464:CDS |
| TCTGGTTCAATACTCTTTGT+TGG | 0.379352 | 3.1:+80314302 | MS.gene48464:CDS |
| AGTAGCAACAATTTCTTTGA+AGG | 0.389170 | 3.1:-80313421 | None:intergenic |
| CGTCAGCTTCTCTCCTTCCT+TGG | 0.391854 | 3.1:+80313258 | MS.gene48464:CDS |
| ATTAGTGATGTTCTTTCACC+TGG | 0.400115 | 3.1:+80313636 | MS.gene48464:CDS |
| CTACTATGCTGAGCACAGTT+TGG | 0.403622 | 3.1:-80313209 | None:intergenic |
| CTCTTGCATCGGGAAGAAAA+AGG | 0.404907 | 3.1:-80313899 | None:intergenic |
| GTTAGCTTTGATTGAGAAAG+TGG | 0.425057 | 3.1:+80313929 | MS.gene48464:CDS |
| GCTGCTGCAGTCACTACAAC+TGG | 0.430882 | 3.1:+80314188 | MS.gene48464:CDS |
| TTCTAATGTATCAAAAGAGT+TGG | 0.443921 | 3.1:+80314052 | MS.gene48464:CDS |
| TACAACTGGATTACTACAAA+TGG | 0.445129 | 3.1:+80314202 | MS.gene48464:CDS |
| CTTCTTCTTGCTAGTCATGA+AGG | 0.449150 | 3.1:-80313793 | None:intergenic |
| CAACAAGAGGATTGAGCACT+TGG | 0.450565 | 3.1:-80314325 | None:intergenic |
| AGTTTGTGTTTCAAAATCTC+AGG | 0.451018 | 3.1:-80313960 | None:intergenic |
| CAAGTGCTCAATCCTCTTGT+TGG | 0.453144 | 3.1:+80314326 | MS.gene48464:CDS |
| TTGTGTCGGACCCTCGGAAC+CGG | 0.453396 | 3.1:-80313235 | None:intergenic |
| TCTAATGTATCAAAAGAGTT+GGG | 0.467052 | 3.1:+80314053 | MS.gene48464:CDS |
| CTCCGTCTTCCTTATAAGAA+AGG | 0.468293 | 3.1:+80313849 | MS.gene48464:CDS |
| GAAGGAAGGGTAAACAGAAA+AGG | 0.470210 | 3.1:-80313403 | None:intergenic |
| AACAATCCATCTCTTGCATC+GGG | 0.475826 | 3.1:-80313909 | None:intergenic |
| GGTCAGCAACAAAGTCTATC+GGG | 0.476021 | 3.1:-80314247 | None:intergenic |
| GTGTTTCAAAATCTCAGGTT+TGG | 0.477894 | 3.1:-80313955 | None:intergenic |
| GTCAAACCACCAGCAGAGAA+AGG | 0.480295 | 3.1:-80314086 | None:intergenic |
| CAACAATTTCTTTGAAGGAA+GGG | 0.481798 | 3.1:-80313416 | None:intergenic |
| GCAACAATTTCTTTGAAGGA+AGG | 0.489739 | 3.1:-80313417 | None:intergenic |
| TTGATAAGAGACGATCTGTC+TGG | 0.490675 | 3.1:+80314284 | MS.gene48464:CDS |
| TTAAATTAGCGATTGATTCA+CGG | 0.491730 | 3.1:-80313101 | None:intergenic |
| TCTCGGTGGCAGCTCAATCA+AGG | 0.492253 | 3.1:+80313767 | MS.gene48464:CDS |
| CATAGTAGCTGCCGGTTCCG+AGG | 0.494572 | 3.1:+80313224 | MS.gene48464:CDS |
| GAGAGGATAAGGAGTTGAGA+TGG | 0.502008 | 3.1:-80313296 | None:intergenic |
| AGACAACTGTGGACCACCAT+AGG | 0.503886 | 3.1:-80313352 | None:intergenic |
| TAAGGAGTTGAGATGGTCAA+TGG | 0.510048 | 3.1:-80313289 | None:intergenic |
| TGCCTTTCTTATAAGGAAGA+CGG | 0.518934 | 3.1:-80313851 | None:intergenic |
| TGGTCAGCAACAAAGTCTAT+CGG | 0.525482 | 3.1:-80314248 | None:intergenic |
| TAACAATCCATCTCTTGCAT+CGG | 0.531098 | 3.1:-80313910 | None:intergenic |
| TTTCTTCCCGATGCAAGAGA+TGG | 0.533391 | 3.1:+80313903 | MS.gene48464:CDS |
| GAAACACAAACTTCCACGTA+AGG | 0.535930 | 3.1:+80313971 | MS.gene48464:CDS |
| CTAGACGACGCTGCTCCCTA+TGG | 0.544397 | 3.1:+80313336 | MS.gene48464:CDS |
| AATATGTTAGAAACCCAAAT+CGG | 0.552609 | 3.1:-80314125 | None:intergenic |
| ATAGTAGCTGCCGGTTCCGA+GGG | 0.555454 | 3.1:+80313225 | MS.gene48464:CDS |
| CTGACGTTGTGTCGGACCCT+CGG | 0.555565 | 3.1:-80313241 | None:intergenic |
| CCACGTAAGGAAGTGATAGT+TGG | 0.557014 | 3.1:+80313984 | MS.gene48464:CDS |
| CGTCTAGCACAGAGGAAAAG+AGG | 0.559719 | 3.1:-80313320 | None:intergenic |
| GTGCTCAGCATAGTAGCTGC+CGG | 0.569522 | 3.1:+80313216 | MS.gene48464:CDS |
| TTCTTCTTGCTAGTCATGAA+GGG | 0.570100 | 3.1:-80313792 | None:intergenic |
| CACTATACTTTAAAGGAGCA+TGG | 0.570932 | 3.1:+80313697 | MS.gene48464:CDS |
| CCAACTATCACTTCCTTACG+TGG | 0.582417 | 3.1:-80313984 | None:intergenic |
| GAGTGACAACGGCGAAAGCA+CGG | 0.585179 | 3.1:-80313187 | None:intergenic |
| GCAACAAAGTCTATCGGGGT+CGG | 0.602278 | 3.1:-80314242 | None:intergenic |
| TGATTGAGCTGCCACCGAGA+AGG | 0.604903 | 3.1:-80313764 | None:intergenic |
| GACAACTGTGGACCACCATA+GGG | 0.607442 | 3.1:-80313351 | None:intergenic |
| GAGAGAAGCTGACGTTGTGT+CGG | 0.614776 | 3.1:-80313249 | None:intergenic |
| ATCGGGGTCGGAATTGAAGT+AGG | 0.617916 | 3.1:-80314230 | None:intergenic |
| AGCAGCGTCGTCTAGCACAG+AGG | 0.630122 | 3.1:-80313328 | None:intergenic |
| ATCGCTTGATTTCATAAACA+AGG | 0.632810 | 3.1:+80313464 | MS.gene48464:CDS |
| CACAGAGGAAAAGAGGTGAG+AGG | 0.632829 | 3.1:-80313313 | None:intergenic |
| AGCACAGTTTGGAGTGACAA+CGG | 0.634618 | 3.1:-80313198 | None:intergenic |
| GAAATCAAGCGATCTGAGAG+TGG | 0.637649 | 3.1:-80313454 | None:intergenic |
| TTAGTGATGTTCTTTCACCT+GGG | 0.638192 | 3.1:+80313637 | MS.gene48464:CDS |
| GACGACGCTGCTCCCTATGG+TGG | 0.640142 | 3.1:+80313339 | MS.gene48464:CDS |
| CACCGAGAAGGTGAAAATCA+CGG | 0.643065 | 3.1:-80313752 | None:intergenic |
| AATTATGATCTACCAACAAG+AGG | 0.656976 | 3.1:-80314338 | None:intergenic |
| GTTAAGCTATCAATTGACCC+AGG | 0.685707 | 3.1:-80313654 | None:intergenic |
| GTCAGCAACAAAGTCTATCG+GGG | 0.687796 | 3.1:-80314246 | None:intergenic |
| TGTCGTAAAGGCTGATGATG+CGG | 0.712450 | 3.1:+80313569 | MS.gene48464:intron |
| AATTAGCGATTGATTCACGG+TGG | 0.714709 | 3.1:-80313098 | None:intergenic |
| GAGTTGACAAAAGACAACTG+TGG | 0.767839 | 3.1:-80313363 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAGAAGGAAAATATATAT+AGG | - | chr3.1:80313492-80313511 | None:intergenic | 20.0% |
| !! | TTCATTGAAGTAAATGAAAA+AGG | + | chr3.1:80314158-80314177 | MS.gene48464:CDS | 20.0% |
| !!! | TGTTTTTGATAACAAATGTT+TGG | - | chr3.1:80313148-80313167 | None:intergenic | 20.0% |
| ! | AATATGTTAGAAACCCAAAT+CGG | - | chr3.1:80314128-80314147 | None:intergenic | 25.0% |
| ! | ATATCATTGCCTTTCTTATA+AGG | - | chr3.1:80313861-80313880 | None:intergenic | 25.0% |
| ! | CTCTTATCAAAAACATGAAA+GGG | - | chr3.1:80314274-80314293 | None:intergenic | 25.0% |
| ! | GGTTAAAAAAGTGAATGTAT+GGG | + | chr3.1:80313590-80313609 | MS.gene48464:CDS | 25.0% |
| ! | TATATTTGATGTTGTCGTAA+AGG | + | chr3.1:80313557-80313576 | MS.gene48464:intron | 25.0% |
| ! | TATTGTTCTATTAGAGAAGA+AGG | - | chr3.1:80313506-80313525 | None:intergenic | 25.0% |
| ! | TCTAATGTATCAAAAGAGTT+GGG | + | chr3.1:80314053-80314072 | MS.gene48464:CDS | 25.0% |
| ! | TCTCTTATCAAAAACATGAA+AGG | - | chr3.1:80314275-80314294 | None:intergenic | 25.0% |
| ! | TTCTAATGTATCAAAAGAGT+TGG | + | chr3.1:80314052-80314071 | MS.gene48464:CDS | 25.0% |
| !! | CAGTTTATAAATGCTTTTGA+TGG | + | chr3.1:80313816-80313835 | MS.gene48464:CDS | 25.0% |
| !! | TTAAATTAGCGATTGATTCA+CGG | - | chr3.1:80313104-80313123 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTGATGCATCAAA+TGG | - | chr3.1:80313729-80313748 | None:intergenic | 25.0% |
| AGTAGCAACAATTTCTTTGA+AGG | - | chr3.1:80313424-80313443 | None:intergenic | 30.0% | |
| AGTTTGTGTTTCAAAATCTC+AGG | - | chr3.1:80313963-80313982 | None:intergenic | 30.0% | |
| ATCGCTTGATTTCATAAACA+AGG | + | chr3.1:80313464-80313483 | MS.gene48464:CDS | 30.0% | |
| CGGTTAAAAAAGTGAATGTA+TGG | + | chr3.1:80313589-80313608 | MS.gene48464:CDS | 30.0% | |
| GCTAATGCACTATACTTTAA+AGG | + | chr3.1:80313690-80313709 | MS.gene48464:CDS | 30.0% | |
| TACAACTGGATTACTACAAA+TGG | + | chr3.1:80314202-80314221 | MS.gene48464:CDS | 30.0% | |
| TTATCAAAAACATGAAAGGG+TGG | - | chr3.1:80314271-80314290 | None:intergenic | 30.0% | |
| ! | CAACAATTTCTTTGAAGGAA+GGG | - | chr3.1:80313419-80313438 | None:intergenic | 30.0% |
| ATTAGTGATGTTCTTTCACC+TGG | + | chr3.1:80313636-80313655 | MS.gene48464:CDS | 35.0% | |
| CCACGTTTCAAAATTTCTTC+TGG | + | chr3.1:80314020-80314039 | MS.gene48464:CDS | 35.0% | |
| GTGTTTCAAAATCTCAGGTT+TGG | - | chr3.1:80313958-80313977 | None:intergenic | 35.0% | |
| TAACAATCCATCTCTTGCAT+CGG | - | chr3.1:80313913-80313932 | None:intergenic | 35.0% | |
| TGCCTTTCTTATAAGGAAGA+CGG | - | chr3.1:80313854-80313873 | None:intergenic | 35.0% | |
| TGGGCTAAAAAAGAGACAAA+CGG | + | chr3.1:80313609-80313628 | MS.gene48464:CDS | 35.0% | |
| TTAGTGATGTTCTTTCACCT+GGG | + | chr3.1:80313637-80313656 | MS.gene48464:CDS | 35.0% | |
| TTCTTCTTGCTAGTCATGAA+GGG | - | chr3.1:80313795-80313814 | None:intergenic | 35.0% | |
| ! | CACTATACTTTAAAGGAGCA+TGG | + | chr3.1:80313697-80313716 | MS.gene48464:CDS | 35.0% |
| ! | GCAACAATTTCTTTGAAGGA+AGG | - | chr3.1:80313420-80313439 | None:intergenic | 35.0% |
| ! | TCTGGTTCAATACTCTTTGT+TGG | + | chr3.1:80314302-80314321 | MS.gene48464:CDS | 35.0% |
| !! | AATGGATTTTGATCCAAGGA+AGG | - | chr3.1:80313274-80313293 | None:intergenic | 35.0% |
| !! | GTTAGCTTTGATTGAGAAAG+TGG | + | chr3.1:80313929-80313948 | MS.gene48464:CDS | 35.0% |
| !!! | CCAGAAGAAATTTTGAAACG+TGG | - | chr3.1:80314023-80314042 | None:intergenic | 35.0% |
| AACAATCCATCTCTTGCATC+GGG | - | chr3.1:80313912-80313931 | None:intergenic | 40.0% | |
| CTCCGTCTTCCTTATAAGAA+AGG | + | chr3.1:80313849-80313868 | MS.gene48464:CDS | 40.0% | |
| CTTCTTCTTGCTAGTCATGA+AGG | - | chr3.1:80313796-80313815 | None:intergenic | 40.0% | |
| GAAACACAAACTTCCACGTA+AGG | + | chr3.1:80313971-80313990 | MS.gene48464:CDS | 40.0% | |
| GAAGGAAGGGTAAACAGAAA+AGG | - | chr3.1:80313406-80313425 | None:intergenic | 40.0% | |
| GAGTTGACAAAAGACAACTG+TGG | - | chr3.1:80313366-80313385 | None:intergenic | 40.0% | |
| GGTGATGTTCATAGCATTCT+TGG | - | chr3.1:80313127-80313146 | None:intergenic | 40.0% | |
| GTTAAGCTATCAATTGACCC+AGG | - | chr3.1:80313657-80313676 | None:intergenic | 40.0% | |
| TAAGGAGTTGAGATGGTCAA+TGG | - | chr3.1:80313292-80313311 | None:intergenic | 40.0% | |
| TGCTGGTGGTTTGACAAAAA+TGG | + | chr3.1:80314094-80314113 | MS.gene48464:CDS | 40.0% | |
| TGGTCAGCAACAAAGTCTAT+CGG | - | chr3.1:80314251-80314270 | None:intergenic | 40.0% | |
| TTGATAAGAGACGATCTGTC+TGG | + | chr3.1:80314284-80314303 | MS.gene48464:CDS | 40.0% | |
| ! | AATTAGCGATTGATTCACGG+TGG | - | chr3.1:80313101-80313120 | None:intergenic | 40.0% |
| ! | TGTCTTTTGTCAACTCTGTG+TGG | + | chr3.1:80313370-80313389 | MS.gene48464:CDS | 40.0% |
| !! | GGTCAATGGATTTTGATCCA+AGG | - | chr3.1:80313278-80313297 | None:intergenic | 40.0% |
| !! | GTTGTTTTACCTTTCTCTGC+TGG | + | chr3.1:80314077-80314096 | MS.gene48464:CDS | 40.0% |
| AAATGGCAGACTCTCCGATT+TGG | + | chr3.1:80314111-80314130 | MS.gene48464:CDS | 45.0% | |
| AATGGCAGACTCTCCGATTT+GGG | + | chr3.1:80314112-80314131 | MS.gene48464:CDS | 45.0% | |
| CAACAAGAGGATTGAGCACT+TGG | - | chr3.1:80314328-80314347 | None:intergenic | 45.0% | |
| CAAGTGCTCAATCCTCTTGT+TGG | + | chr3.1:80314326-80314345 | MS.gene48464:CDS | 45.0% | |
| CACCGAGAAGGTGAAAATCA+CGG | - | chr3.1:80313755-80313774 | None:intergenic | 45.0% | |
| CCAACTATCACTTCCTTACG+TGG | - | chr3.1:80313987-80314006 | None:intergenic | 45.0% | |
| CCACGTAAGGAAGTGATAGT+TGG | + | chr3.1:80313984-80314003 | MS.gene48464:CDS | 45.0% | |
| CTACTATGCTGAGCACAGTT+TGG | - | chr3.1:80313212-80313231 | None:intergenic | 45.0% | |
| CTCTTGCATCGGGAAGAAAA+AGG | - | chr3.1:80313902-80313921 | None:intergenic | 45.0% | |
| GAAATCAAGCGATCTGAGAG+TGG | - | chr3.1:80313457-80313476 | None:intergenic | 45.0% | |
| GAGAGGATAAGGAGTTGAGA+TGG | - | chr3.1:80313299-80313318 | None:intergenic | 45.0% | |
| GGAAAAGAGGTGAGAGGATA+AGG | - | chr3.1:80313310-80313329 | None:intergenic | 45.0% | |
| GGTCAGCAACAAAGTCTATC+GGG | - | chr3.1:80314250-80314269 | None:intergenic | 45.0% | |
| GTCAGCAACAAAGTCTATCG+GGG | - | chr3.1:80314249-80314268 | None:intergenic | 45.0% | |
| TTTCTTCCCGATGCAAGAGA+TGG | + | chr3.1:80313903-80313922 | MS.gene48464:CDS | 45.0% | |
| ! | AGCACAGTTTGGAGTGACAA+CGG | - | chr3.1:80313201-80313220 | None:intergenic | 45.0% |
| ! | GACCGTGATTTTCACCTTCT+CGG | + | chr3.1:80313750-80313769 | MS.gene48464:CDS | 45.0% |
| ! | GTTTTACCTTTCTCTGCTGG+TGG | + | chr3.1:80314080-80314099 | MS.gene48464:CDS | 45.0% |
| ! | TGTCGTAAAGGCTGATGATG+CGG | + | chr3.1:80313569-80313588 | MS.gene48464:intron | 45.0% |
| AGACAACTGTGGACCACCAT+AGG | - | chr3.1:80313355-80313374 | None:intergenic | 50.0% | |
| ATCGGGGTCGGAATTGAAGT+AGG | - | chr3.1:80314233-80314252 | None:intergenic | 50.0% | |
| CACAGAGGAAAAGAGGTGAG+AGG | - | chr3.1:80313316-80313335 | None:intergenic | 50.0% | |
| CGTCTAGCACAGAGGAAAAG+AGG | - | chr3.1:80313323-80313342 | None:intergenic | 50.0% | |
| GACAACTGTGGACCACCATA+GGG | - | chr3.1:80313354-80313373 | None:intergenic | 50.0% | |
| GAGAGAAGCTGACGTTGTGT+CGG | - | chr3.1:80313252-80313271 | None:intergenic | 50.0% | |
| GCAACAAAGTCTATCGGGGT+CGG | - | chr3.1:80314245-80314264 | None:intergenic | 50.0% | |
| GTCAAACCACCAGCAGAGAA+AGG | - | chr3.1:80314089-80314108 | None:intergenic | 50.0% | |
| ! | CGTGATTTTCACCTTCTCGG+TGG | + | chr3.1:80313753-80313772 | MS.gene48464:CDS | 50.0% |
| CGTCAGCTTCTCTCCTTCCT+TGG | + | chr3.1:80313258-80313277 | MS.gene48464:CDS | 55.0% | |
| GAGTGACAACGGCGAAAGCA+CGG | - | chr3.1:80313190-80313209 | None:intergenic | 55.0% | |
| GCTGCTGCAGTCACTACAAC+TGG | + | chr3.1:80314188-80314207 | MS.gene48464:CDS | 55.0% | |
| GTGCTCAGCATAGTAGCTGC+CGG | + | chr3.1:80313216-80313235 | MS.gene48464:CDS | 55.0% | |
| TCTCGGTGGCAGCTCAATCA+AGG | + | chr3.1:80313767-80313786 | MS.gene48464:CDS | 55.0% | |
| TGATTGAGCTGCCACCGAGA+AGG | - | chr3.1:80313767-80313786 | None:intergenic | 55.0% | |
| !! | ATAGTAGCTGCCGGTTCCGA+GGG | + | chr3.1:80313225-80313244 | MS.gene48464:CDS | 55.0% |
| AGCAGCGTCGTCTAGCACAG+AGG | - | chr3.1:80313331-80313350 | None:intergenic | 60.0% | |
| CTAGACGACGCTGCTCCCTA+TGG | + | chr3.1:80313336-80313355 | MS.gene48464:CDS | 60.0% | |
| CTGACGTTGTGTCGGACCCT+CGG | - | chr3.1:80313244-80313263 | None:intergenic | 60.0% | |
| TTGTGTCGGACCCTCGGAAC+CGG | - | chr3.1:80313238-80313257 | None:intergenic | 60.0% | |
| !! | CATAGTAGCTGCCGGTTCCG+AGG | + | chr3.1:80313224-80313243 | MS.gene48464:CDS | 60.0% |
| GACGACGCTGCTCCCTATGG+TGG | + | chr3.1:80313339-80313358 | MS.gene48464:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 80313090 | 80314358 | 80313090 | ID=MS.gene48464 |
| chr3.1 | mRNA | 80313090 | 80314358 | 80313090 | ID=MS.gene48464.t1;Parent=MS.gene48464 |
| chr3.1 | exon | 80313090 | 80313485 | 80313090 | ID=MS.gene48464.t1.exon1;Parent=MS.gene48464.t1 |
| chr3.1 | CDS | 80313090 | 80313485 | 80313090 | ID=cds.MS.gene48464.t1;Parent=MS.gene48464.t1 |
| chr3.1 | exon | 80313579 | 80314358 | 80313579 | ID=MS.gene48464.t1.exon2;Parent=MS.gene48464.t1 |
| chr3.1 | CDS | 80313579 | 80314358 | 80313579 | ID=cds.MS.gene48464.t1;Parent=MS.gene48464.t1 |
| Gene Sequence |
| Protein sequence |
