Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48465.t1 | XP_003602989.1 | 92.5 | 400 | 30 | 0 | 1 | 400 | 1 | 400 | 1.60E-207 | 731.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48465.t1 | Q9S7T8 | 52.9 | 395 | 175 | 5 | 6 | 398 | 5 | 390 | 2.4e-106 | 387.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48465.t1 | G7J5S4 | 92.5 | 400 | 30 | 0 | 1 | 400 | 1 | 400 | 1.2e-207 | 731.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045585 | MS.gene48465 | PPI |
| MS.gene031697 | MS.gene48465 | PPI |
| MS.gene065945 | MS.gene48465 | PPI |
| MS.gene065944 | MS.gene48465 | PPI |
| MS.gene006610 | MS.gene48465 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48465.t1 | MTR_3g101180 | 92.500 | 400 | 30 | 0 | 1 | 400 | 1 | 400 | 0.0 | 755 |
| MS.gene48465.t1 | MTR_8g461160 | 74.314 | 401 | 95 | 3 | 1 | 400 | 1 | 394 | 0.0 | 566 |
| MS.gene48465.t1 | MTR_7g050750 | 67.003 | 397 | 125 | 3 | 2 | 398 | 4 | 394 | 0.0 | 514 |
| MS.gene48465.t1 | MTR_3g101010 | 67.176 | 393 | 119 | 3 | 6 | 398 | 5 | 387 | 0.0 | 512 |
| MS.gene48465.t1 | MTR_7g451890 | 66.247 | 397 | 128 | 2 | 2 | 398 | 10 | 400 | 1.67e-179 | 505 |
| MS.gene48465.t1 | MTR_7g047780 | 66.247 | 397 | 128 | 2 | 2 | 398 | 10 | 400 | 1.22e-178 | 503 |
| MS.gene48465.t1 | MTR_3g101130 | 65.163 | 399 | 128 | 4 | 1 | 399 | 1 | 388 | 2.10e-177 | 499 |
| MS.gene48465.t1 | MTR_7g050810 | 66.499 | 397 | 127 | 2 | 2 | 398 | 12 | 402 | 2.62e-177 | 500 |
| MS.gene48465.t1 | MTR_3g018740 | 66.497 | 394 | 119 | 4 | 6 | 398 | 5 | 386 | 2.15e-175 | 494 |
| MS.gene48465.t1 | MTR_4g045707 | 64.232 | 397 | 130 | 4 | 1 | 397 | 1 | 385 | 1.01e-173 | 490 |
| MS.gene48465.t1 | MTR_8g027395 | 63.797 | 395 | 127 | 4 | 6 | 399 | 17 | 396 | 2.22e-170 | 482 |
| MS.gene48465.t1 | MTR_3g101030 | 60.298 | 403 | 134 | 4 | 12 | 398 | 35 | 427 | 1.08e-164 | 469 |
| MS.gene48465.t1 | MTR_8g027420 | 62.690 | 394 | 122 | 4 | 6 | 399 | 6 | 374 | 3.74e-164 | 465 |
| MS.gene48465.t1 | MTR_4g088525 | 62.873 | 369 | 125 | 3 | 30 | 398 | 11 | 367 | 1.82e-157 | 448 |
| MS.gene48465.t1 | MTR_3g048000 | 58.396 | 399 | 131 | 5 | 5 | 400 | 26 | 392 | 2.66e-157 | 449 |
| MS.gene48465.t1 | MTR_2g046030 | 58.690 | 397 | 145 | 6 | 6 | 398 | 5 | 386 | 1.54e-149 | 429 |
| MS.gene48465.t1 | MTR_4g088535 | 60.000 | 395 | 126 | 6 | 6 | 399 | 7 | 370 | 2.57e-149 | 428 |
| MS.gene48465.t1 | MTR_2g045980 | 58.942 | 397 | 144 | 6 | 6 | 398 | 5 | 386 | 7.42e-149 | 427 |
| MS.gene48465.t1 | MTR_3g101050 | 59.747 | 395 | 126 | 6 | 10 | 400 | 33 | 398 | 2.45e-146 | 421 |
| MS.gene48465.t1 | MTR_3g015620 | 59.137 | 394 | 129 | 5 | 6 | 398 | 16 | 378 | 5.87e-143 | 412 |
| MS.gene48465.t1 | MTR_3g101200 | 57.750 | 400 | 136 | 8 | 1 | 400 | 26 | 392 | 1.68e-140 | 406 |
| MS.gene48465.t1 | MTR_3g101190 | 54.595 | 370 | 97 | 2 | 30 | 399 | 13 | 311 | 1.22e-129 | 375 |
| MS.gene48465.t1 | MTR_3g102920 | 53.695 | 406 | 133 | 8 | 4 | 399 | 49 | 409 | 1.57e-128 | 376 |
| MS.gene48465.t1 | MTR_7g050830 | 58.824 | 323 | 97 | 2 | 2 | 304 | 12 | 318 | 1.02e-125 | 366 |
| MS.gene48465.t1 | MTR_3g100995 | 64.151 | 265 | 84 | 3 | 134 | 398 | 9 | 262 | 2.88e-116 | 339 |
| MS.gene48465.t1 | MTR_3g018747 | 61.940 | 268 | 78 | 5 | 132 | 398 | 9 | 253 | 6.05e-101 | 300 |
| MS.gene48465.t1 | MTR_3g100010 | 53.459 | 318 | 95 | 5 | 31 | 315 | 40 | 337 | 2.31e-100 | 302 |
| MS.gene48465.t1 | MTR_3g015760 | 61.111 | 288 | 98 | 6 | 113 | 398 | 4 | 279 | 1.89e-99 | 297 |
| MS.gene48465.t1 | MTR_3g114310 | 43.750 | 400 | 194 | 13 | 12 | 397 | 25 | 407 | 2.90e-84 | 263 |
| MS.gene48465.t1 | MTR_3g101110 | 57.312 | 253 | 76 | 3 | 123 | 374 | 59 | 280 | 1.53e-83 | 257 |
| MS.gene48465.t1 | MTR_3g101150 | 77.848 | 158 | 34 | 1 | 243 | 399 | 1 | 158 | 3.63e-83 | 251 |
| MS.gene48465.t1 | MTR_3g100520 | 57.642 | 229 | 74 | 5 | 173 | 399 | 1 | 208 | 2.31e-79 | 243 |
| MS.gene48465.t1 | MTR_3g111160 | 61.607 | 224 | 74 | 4 | 177 | 398 | 5 | 218 | 2.60e-79 | 244 |
| MS.gene48465.t1 | MTR_3g099970 | 61.165 | 206 | 58 | 4 | 127 | 332 | 15 | 198 | 1.83e-76 | 236 |
| MS.gene48465.t1 | MTR_2g046410 | 56.542 | 214 | 79 | 4 | 189 | 398 | 144 | 347 | 5.60e-71 | 227 |
| MS.gene48465.t1 | MTR_3g101020 | 54.404 | 193 | 53 | 3 | 206 | 398 | 1 | 158 | 5.99e-60 | 192 |
| MS.gene48465.t1 | MTR_3g111150 | 55.866 | 179 | 53 | 2 | 8 | 186 | 1 | 153 | 2.02e-59 | 191 |
| MS.gene48465.t1 | MTR_3g102870 | 57.576 | 165 | 62 | 3 | 195 | 357 | 1 | 159 | 6.17e-55 | 179 |
| MS.gene48465.t1 | MTR_3g100990 | 61.940 | 134 | 49 | 1 | 4 | 137 | 3 | 134 | 6.17e-46 | 165 |
| MS.gene48465.t1 | MTR_4g093550 | 58.621 | 87 | 34 | 1 | 5 | 91 | 5 | 89 | 3.66e-23 | 93.2 |
| MS.gene48465.t1 | MTR_3g101140 | 66.667 | 69 | 21 | 1 | 330 | 398 | 48 | 114 | 1.45e-21 | 89.7 |
| MS.gene48465.t1 | MTR_6g046890 | 58.333 | 72 | 24 | 1 | 29 | 94 | 20 | 91 | 9.02e-18 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48465.t1 | AT1G47710 | 52.911 | 395 | 175 | 5 | 6 | 398 | 5 | 390 | 3.81e-136 | 395 |
| MS.gene48465.t1 | AT1G47710 | 52.911 | 395 | 175 | 5 | 6 | 398 | 32 | 417 | 1.77e-135 | 394 |
| MS.gene48465.t1 | AT3G45220 | 44.888 | 401 | 197 | 5 | 6 | 397 | 5 | 390 | 1.55e-115 | 342 |
| MS.gene48465.t1 | AT2G25240 | 46.212 | 396 | 191 | 7 | 6 | 397 | 5 | 382 | 4.17e-112 | 333 |
| MS.gene48465.t1 | AT2G26390 | 45.614 | 399 | 193 | 6 | 6 | 397 | 5 | 386 | 5.29e-111 | 331 |
| MS.gene48465.t1 | AT1G64030 | 45.038 | 393 | 189 | 7 | 6 | 397 | 5 | 371 | 6.27e-103 | 310 |
| MS.gene48465.t1 | AT1G62170 | 43.617 | 376 | 173 | 5 | 29 | 397 | 88 | 431 | 1.30e-98 | 300 |
| MS.gene48465.t1 | AT2G35580 | 43.869 | 367 | 173 | 8 | 36 | 397 | 33 | 371 | 2.80e-95 | 290 |
| MS.gene48465.t1 | AT2G14540 | 44.416 | 394 | 188 | 7 | 6 | 397 | 33 | 397 | 4.36e-95 | 291 |
| MS.gene48465.t1 | AT1G62170 | 40.098 | 409 | 173 | 6 | 29 | 397 | 88 | 464 | 1.54e-91 | 283 |
| MS.gene48465.t1 | AT1G64010 | 43.612 | 227 | 94 | 5 | 173 | 397 | 1 | 195 | 1.72e-53 | 176 |
| MS.gene48465.t1 | AT1G64010 | 42.925 | 212 | 87 | 5 | 188 | 397 | 2 | 181 | 4.38e-47 | 159 |
| MS.gene48465.t1 | AT1G62160 | 40.580 | 207 | 89 | 5 | 195 | 397 | 42 | 218 | 7.89e-31 | 117 |
| MS.gene48465.t1 | AT1G63280 | 52.066 | 121 | 53 | 2 | 129 | 249 | 5 | 120 | 3.53e-30 | 113 |
| MS.gene48465.t1 | AT1G51330 | 52.632 | 114 | 50 | 3 | 131 | 243 | 30 | 140 | 1.23e-27 | 108 |
| MS.gene48465.t1 | AT1G64020 | 37.500 | 112 | 67 | 3 | 13 | 123 | 12 | 121 | 1.87e-15 | 72.8 |
Find 85 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAATTCAATATTGCTTT+TGG | 0.154612 | 3.1:+80321163 | MS.gene48465:CDS |
| TCTGGAACGGTACTCTTTAT+TGG | 0.157347 | 3.1:+80321463 | MS.gene48465:CDS |
| TGAGAAAAGAAGTGAATTTA+TGG | 0.175161 | 3.1:+80320717 | MS.gene48465:CDS |
| CCAAAAGCAATATTGAATTT+TGG | 0.207465 | 3.1:-80321163 | None:intergenic |
| AGCTTCTGAATCTGAGTTTC+TGG | 0.214440 | 3.1:+80321093 | MS.gene48465:CDS |
| AGCTGCTGCGGCGACCTCTA+TGG | 0.244984 | 3.1:+80321342 | MS.gene48465:CDS |
| TTTGAGTTCATCTGTGGATT+TGG | 0.271077 | 3.1:-80319846 | None:intergenic |
| GAAATCAACCGAGGCAATAT+TGG | 0.308129 | 3.1:-80320017 | None:intergenic |
| GGAATATGTTGGAAACATAA+AGG | 0.343618 | 3.1:-80321282 | None:intergenic |
| TACAGGAGGTTTGACGAATA+TGG | 0.357546 | 3.1:+80321237 | MS.gene48465:CDS |
| TTTCTTCCTGATGCAAAAGA+TGG | 0.384145 | 3.1:+80321046 | MS.gene48465:CDS |
| TTCTTTGGAGAACAAGTGTT+TGG | 0.385362 | 3.1:-80319708 | None:intergenic |
| TTGATCAGAGAAGATTTGTC+TGG | 0.431879 | 3.1:+80321445 | MS.gene48465:CDS |
| GAGAAAAGAAGTGAATTTAT+GGG | 0.437617 | 3.1:+80320718 | MS.gene48465:CDS |
| GTTAAGCTATTAACAGAGTC+AGG | 0.441864 | 3.1:-80320782 | None:intergenic |
| AGTAGCAACAGTTTCTTTGA+AGG | 0.446891 | 3.1:-80319984 | None:intergenic |
| GCTGCTGCGGCGACCTCTAT+GGG | 0.449492 | 3.1:+80321343 | MS.gene48465:CDS |
| CTCGAGAAACAGTGAGAGTA+GGG | 0.454293 | 3.1:+80321128 | MS.gene48465:CDS |
| CTCTTCATGCTTGTCATGAA+AGG | 0.458718 | 3.1:-80320920 | None:intergenic |
| TTTATTGAAGTAAATGAAAA+GGG | 0.464814 | 3.1:+80321313 | MS.gene48465:CDS |
| AAGTCTATCGGAGTCGGTGG+AGG | 0.469057 | 3.1:-80321397 | None:intergenic |
| CTTGCCGATGCCACTCCAGC+CGG | 0.469422 | 3.1:+80319899 | MS.gene48465:CDS |
| AAAAGACTTGTGGAATATGT+TGG | 0.473810 | 3.1:-80321293 | None:intergenic |
| TGCACATGTGGTAGGCGTAC+TGG | 0.475320 | 3.1:+80321373 | MS.gene48465:CDS |
| GTTCATCTGTGGATTTGGAT+TGG | 0.476342 | 3.1:-80319841 | None:intergenic |
| CATAATTGCGGCCGGCGCTG+AGG | 0.476553 | 3.1:+80319787 | MS.gene48465:CDS |
| CTCGGTTGATTTCGCGAACA+AGG | 0.476788 | 3.1:+80320027 | MS.gene48465:CDS |
| GTTGTTAGCTTTGACTGAAA+AGG | 0.478445 | 3.1:+80321069 | MS.gene48465:CDS |
| ATAATTGCGGCCGGCGCTGA+GGG | 0.479971 | 3.1:+80319788 | MS.gene48465:CDS |
| GATAGCAGAGGTCCGCCGGC+TGG | 0.482250 | 3.1:-80319914 | None:intergenic |
| TTCTGGCGTACTGAAGGAGC+TGG | 0.483907 | 3.1:+80321195 | MS.gene48465:CDS |
| TTACTTCAATAAAAGACTTG+TGG | 0.491983 | 3.1:-80321303 | None:intergenic |
| CAAAGAAACCTTGGTTAGGT+TGG | 0.494142 | 3.1:-80319678 | None:intergenic |
| GAATATGGTGGACTCTCCTA+TGG | 0.497491 | 3.1:+80321252 | MS.gene48465:CDS |
| TGGTCAAAGAAACCTTGGTT+AGG | 0.502434 | 3.1:-80319682 | None:intergenic |
| CAGAGGTCCGCCGGCTGGAG+TGG | 0.505778 | 3.1:-80319909 | None:intergenic |
| TTCTTCCTGATGCAAAAGAT+GGG | 0.508568 | 3.1:+80321047 | MS.gene48465:CDS |
| GTCAAACCTCCTGTAGAGAA+AGG | 0.511609 | 3.1:-80321229 | None:intergenic |
| TCCGCCGGCTGGAGTGGCAT+CGG | 0.511664 | 3.1:-80319903 | None:intergenic |
| GCAAATGCACTAAACTTCAA+AGG | 0.521150 | 3.1:+80320818 | MS.gene48465:CDS |
| CAAGGATTTGAGTTCATCTG+TGG | 0.522212 | 3.1:-80319852 | None:intergenic |
| GTGCTCAGCATAATTGCGGC+CGG | 0.527395 | 3.1:+80319779 | MS.gene48465:CDS |
| GGCGATGGTCAAAGAAACCT+TGG | 0.531986 | 3.1:-80319687 | None:intergenic |
| GCAACAGTTTCTTTGAAGGA+AGG | 0.533207 | 3.1:-80319980 | None:intergenic |
| TGCATTTGCAAAGATGAGGT+TGG | 0.533879 | 3.1:-80320804 | None:intergenic |
| AAAAGATAGCAGAGGTCCGC+CGG | 0.535576 | 3.1:-80319918 | None:intergenic |
| CGTACTGAAGGAGCTGGGAA+TGG | 0.540169 | 3.1:+80321201 | MS.gene48465:CDS |
| CATCTGTGGATTTGGATTGG+AGG | 0.542409 | 3.1:-80319838 | None:intergenic |
| TGAAACTTCTGGCGTACTGA+AGG | 0.561532 | 3.1:+80321189 | MS.gene48465:CDS |
| ATTCAAATCCAATATTGCCT+CGG | 0.569068 | 3.1:+80320009 | MS.gene48465:CDS |
| TTGTGTAGGACCCTCAGCGC+CGG | 0.572452 | 3.1:-80319798 | None:intergenic |
| TGACTAGGCTGCCATTGAGA+AGG | 0.573438 | 3.1:-80320892 | None:intergenic |
| GCCGATGCCACTCCAGCCGG+CGG | 0.575262 | 3.1:+80319902 | MS.gene48465:CDS |
| AATTAATATCACTTCAGAAG+AGG | 0.577255 | 3.1:-80321499 | None:intergenic |
| CCTCGAGAAACAGTGAGAGT+AGG | 0.581111 | 3.1:+80321127 | MS.gene48465:CDS |
| GGAGAACAAGTGTTTGGCGA+TGG | 0.581128 | 3.1:-80319702 | None:intergenic |
| TGGTCAGCTACAAAGTCTAT+CGG | 0.589225 | 3.1:-80321409 | None:intergenic |
| AGTCTATCGGAGTCGGTGGA+GGG | 0.595120 | 3.1:-80321396 | None:intergenic |
| CAGAGAAGATTTGTCTGGAA+CGG | 0.597197 | 3.1:+80321450 | MS.gene48465:CDS |
| TTAGTGCATTTGCAAAGATG+AGG | 0.597697 | 3.1:-80320808 | None:intergenic |
| TCATGAAAGGAACCTTGACT+AGG | 0.603282 | 3.1:-80320907 | None:intergenic |
| AAACTTCAAAGGAGCATGGT+CGG | 0.604975 | 3.1:+80320829 | MS.gene48465:CDS |
| AGAAACGAGTTGAGAGGACA+AGG | 0.607327 | 3.1:-80319870 | None:intergenic |
| ATGGGACAAAAGTGCACATG+TGG | 0.613422 | 3.1:+80321361 | MS.gene48465:CDS |
| CACTAAACTTCAAAGGAGCA+TGG | 0.613685 | 3.1:+80320825 | MS.gene48465:CDS |
| TCTCAATGGCAGCCTAGTCA+AGG | 0.614260 | 3.1:+80320895 | MS.gene48465:CDS |
| ACAAAGTCTATCGGAGTCGG+TGG | 0.621531 | 3.1:-80321400 | None:intergenic |
| GCTACAAAGTCTATCGGAGT+CGG | 0.623306 | 3.1:-80321403 | None:intergenic |
| GTGAGAAGTTGATCTTGTGT+AGG | 0.627157 | 3.1:-80319812 | None:intergenic |
| TCTGGCGTACTGAAGGAGCT+GGG | 0.630687 | 3.1:+80321196 | MS.gene48465:CDS |
| CATTGTGCTCAGCATAATTG+CGG | 0.632455 | 3.1:+80319775 | MS.gene48465:CDS |
| AGCACAATGTGGAGTGACAA+CGG | 0.634618 | 3.1:-80319761 | None:intergenic |
| AGGAGGTTTGACGAATATGG+TGG | 0.638425 | 3.1:+80321240 | MS.gene48465:CDS |
| TGTGGATTTGGATTGGAGGA+AGG | 0.644070 | 3.1:-80319834 | None:intergenic |
| GACAAAAGTGCACATGTGGT+AGG | 0.651168 | 3.1:+80321365 | MS.gene48465:CDS |
| CACATAAGAAACGAGTTGAG+AGG | 0.656337 | 3.1:-80319876 | None:intergenic |
| CAATTATGCTGAGCACAATG+TGG | 0.663667 | 3.1:-80319772 | None:intergenic |
| AAAGGGAACTGAAGCTGCTG+CGG | 0.664197 | 3.1:+80321330 | MS.gene48465:CDS |
| ATCAATCACCAACCTAACCA+AGG | 0.679210 | 3.1:+80319670 | MS.gene48465:CDS |
| CCTACTCTCACTGTTTCTCG+AGG | 0.682867 | 3.1:-80321127 | None:intergenic |
| CTTCAAAGGAGCATGGTCGG+AGG | 0.684237 | 3.1:+80320832 | MS.gene48465:CDS |
| AAGCTATTAACAGAGTCAGG+TGG | 0.703343 | 3.1:-80320779 | None:intergenic |
| TCGAGAAACAGTGAGAGTAG+GGG | 0.709138 | 3.1:+80321129 | MS.gene48465:CDS |
| CTTGTTCGCGAAATCAACCG+AGG | 0.747560 | 3.1:-80320026 | None:intergenic |
| CCATTGACAAAAGATAGCAG+AGG | 0.769813 | 3.1:-80319926 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTGTATATTTATTTAATT+TGG | + | chr3.1:80320348-80320367 | MS.gene48465:intron | 10.0% |
| !! | AAGAATAAAGATGAATATTT+AGG | - | chr3.1:80320227-80320246 | None:intergenic | 15.0% |
| !! | TTTATTGAAGTAAATGAAAA+GGG | + | chr3.1:80321313-80321332 | MS.gene48465:CDS | 15.0% |
| !!! | TATACACAACTTTAAAAAAA+TGG | - | chr3.1:80320337-80320356 | None:intergenic | 15.0% |
| !!! | TATATTTGATGTTGTTTTAA+AGG | + | chr3.1:80320685-80320704 | MS.gene48465:intron | 15.0% |
| !!! | TTTTAGTAATTTTAACACAA+AGG | + | chr3.1:80320272-80320291 | MS.gene48465:intron | 15.0% |
| !!! | TTTTATTGAAGTAAATGAAA+AGG | + | chr3.1:80321312-80321331 | MS.gene48465:CDS | 15.0% |
| !! | AATTCAAACTTAAAAAAGAG+GGG | - | chr3.1:80320068-80320087 | None:intergenic | 20.0% |
| !! | ATTAATAACTAACAACAGAT+AGG | - | chr3.1:80320559-80320578 | None:intergenic | 20.0% |
| !! | CAATTCAAACTTAAAAAAGA+GGG | - | chr3.1:80320069-80320088 | None:intergenic | 20.0% |
| !! | TCAATTCAAACTTAAAAAAG+AGG | - | chr3.1:80320070-80320089 | None:intergenic | 20.0% |
| !!! | CAAAATTCAATATTGCTTTT+GGG | + | chr3.1:80321164-80321183 | MS.gene48465:CDS | 20.0% |
| !!! | CAATTTATTAGTGTTTTTGA+TGG | + | chr3.1:80320944-80320963 | MS.gene48465:CDS | 20.0% |
| !!! | TTACAAAAGAAGTTGATATT+TGG | - | chr3.1:80320483-80320502 | None:intergenic | 20.0% |
| ! | CATATATTCTGTTGCTAAAT+TGG | - | chr3.1:80320601-80320620 | None:intergenic | 25.0% |
| ! | GAGAAAAGAAGTGAATTTAT+GGG | + | chr3.1:80320718-80320737 | MS.gene48465:CDS | 25.0% |
| ! | GATATTTGGAAAAATGCTAA+AGG | - | chr3.1:80320469-80320488 | None:intergenic | 25.0% |
| ! | TGAGAAAAGAAGTGAATTTA+TGG | + | chr3.1:80320717-80320736 | MS.gene48465:CDS | 25.0% |
| ! | TGTTATGCTAATTTGATGAA+TGG | + | chr3.1:80320511-80320530 | MS.gene48465:intron | 25.0% |
| ! | TTACTTCAATAAAAGACTTG+TGG | - | chr3.1:80321306-80321325 | None:intergenic | 25.0% |
| ! | TTCATTATTTGATGAAACCA+TGG | + | chr3.1:80320178-80320197 | MS.gene48465:intron | 25.0% |
| !! | AGAAAATCCTTTGTTTAGAA+AGG | - | chr3.1:80320405-80320424 | None:intergenic | 25.0% |
| !! | CCAAAAGCAATATTGAATTT+TGG | - | chr3.1:80321166-80321185 | None:intergenic | 25.0% |
| !! | CCAAAATTCAATATTGCTTT+TGG | + | chr3.1:80321163-80321182 | MS.gene48465:CDS | 25.0% |
| !! | CTTTTCTTTGTATTCTTCTT+TGG | - | chr3.1:80319726-80319745 | None:intergenic | 25.0% |
| !!! | TAGTAATTTTAACACAAAGG+AGG | + | chr3.1:80320275-80320294 | MS.gene48465:intron | 25.0% |
| !!! | TATGATTTTAACCTTCTCAA+TGG | + | chr3.1:80320881-80320900 | MS.gene48465:CDS | 25.0% |
| AAAAGACTTGTGGAATATGT+TGG | - | chr3.1:80321296-80321315 | None:intergenic | 30.0% | |
| ATGAAACCATGGAATACTTA+GGG | + | chr3.1:80320189-80320208 | MS.gene48465:intron | 30.0% | |
| ATTCAAATCCAATATTGCCT+CGG | + | chr3.1:80320009-80320028 | MS.gene48465:CDS | 30.0% | |
| ATTCTGTTGCTAAATTGGTT+TGG | - | chr3.1:80320596-80320615 | None:intergenic | 30.0% | |
| CATACAACCTTTCTAAACAA+AGG | + | chr3.1:80320395-80320414 | MS.gene48465:intron | 30.0% | |
| CATGCTTATAAAAAAGACGA+AGG | - | chr3.1:80320979-80320998 | None:intergenic | 30.0% | |
| CTCTGATCAAAAACAAGAAA+GGG | - | chr3.1:80321435-80321454 | None:intergenic | 30.0% | |
| GGAATATGTTGGAAACATAA+AGG | - | chr3.1:80321285-80321304 | None:intergenic | 30.0% | |
| TCAGGAAAATTCTATTCTCT+TGG | - | chr3.1:80320445-80320464 | None:intergenic | 30.0% | |
| TCTCTGATCAAAAACAAGAA+AGG | - | chr3.1:80321436-80321455 | None:intergenic | 30.0% | |
| ! | CTTTGTTTAGAAAGGTTGTA+TGG | - | chr3.1:80320397-80320416 | None:intergenic | 30.0% |
| !! | ACATAAAGGTTTTGATCCAT+AGG | - | chr3.1:80321271-80321290 | None:intergenic | 30.0% |
| !!! | CGTCTTTTTTATAAGCATGA+TGG | + | chr3.1:80320980-80320999 | MS.gene48465:CDS | 30.0% |
| AGTAGCAACAGTTTCTTTGA+AGG | - | chr3.1:80319987-80320006 | None:intergenic | 35.0% | |
| ATGAATATTTAGGTCACGCA+TGG | - | chr3.1:80320217-80320236 | None:intergenic | 35.0% | |
| GATGAAACCATGGAATACTT+AGG | + | chr3.1:80320188-80320207 | MS.gene48465:intron | 35.0% | |
| GCAAATGCACTAAACTTCAA+AGG | + | chr3.1:80320818-80320837 | MS.gene48465:CDS | 35.0% | |
| GTTAAGCTATTAACAGAGTC+AGG | - | chr3.1:80320785-80320804 | None:intergenic | 35.0% | |
| TGATCAAAAACAAGAAAGGG+TGG | - | chr3.1:80321432-80321451 | None:intergenic | 35.0% | |
| TGGAAAAATGCTAAAGGATC+AGG | - | chr3.1:80320463-80320482 | None:intergenic | 35.0% | |
| TTAGTGCATTTGCAAAGATG+AGG | - | chr3.1:80320811-80320830 | None:intergenic | 35.0% | |
| TTCTTCCTGATGCAAAAGAT+GGG | + | chr3.1:80321047-80321066 | MS.gene48465:CDS | 35.0% | |
| TTGATCAGAGAAGATTTGTC+TGG | + | chr3.1:80321445-80321464 | MS.gene48465:CDS | 35.0% | |
| TTTCTTCCTGATGCAAAAGA+TGG | + | chr3.1:80321046-80321065 | MS.gene48465:CDS | 35.0% | |
| ! | ATCTTTTGTCAATGGTGTGT+GGG | + | chr3.1:80319934-80319953 | MS.gene48465:CDS | 35.0% |
| ! | TATCTTTTGTCAATGGTGTG+TGG | + | chr3.1:80319933-80319952 | MS.gene48465:CDS | 35.0% |
| ! | TTCTTTGGAGAACAAGTGTT+TGG | - | chr3.1:80319711-80319730 | None:intergenic | 35.0% |
| ! | TTTGAGTTCATCTGTGGATT+TGG | - | chr3.1:80319849-80319868 | None:intergenic | 35.0% |
| !! | AATTTTAACACAAAGGAGGC+AGG | + | chr3.1:80320279-80320298 | MS.gene48465:intron | 35.0% |
| !! | ATGGTTTTACCTTTCTCTAC+AGG | + | chr3.1:80321220-80321239 | MS.gene48465:CDS | 35.0% |
| !! | ATTTTAACACAAAGGAGGCA+GGG | + | chr3.1:80320280-80320299 | MS.gene48465:intron | 35.0% |
| !! | GTTGTTAGCTTTGACTGAAA+AGG | + | chr3.1:80321069-80321088 | MS.gene48465:CDS | 35.0% |
| AAGCTATTAACAGAGTCAGG+TGG | - | chr3.1:80320782-80320801 | None:intergenic | 40.0% | |
| AGCTTCTGAATCTGAGTTTC+TGG | + | chr3.1:80321093-80321112 | MS.gene48465:CDS | 40.0% | |
| ATCAATCACCAACCTAACCA+AGG | + | chr3.1:80319670-80319689 | MS.gene48465:CDS | 40.0% | |
| ATGGTACCCTAAGTATTCCA+TGG | - | chr3.1:80320198-80320217 | None:intergenic | 40.0% | |
| CAAAGAAACCTTGGTTAGGT+TGG | - | chr3.1:80319681-80319700 | None:intergenic | 40.0% | |
| CAATTATGCTGAGCACAATG+TGG | - | chr3.1:80319775-80319794 | None:intergenic | 40.0% | |
| CACTAAACTTCAAAGGAGCA+TGG | + | chr3.1:80320825-80320844 | MS.gene48465:CDS | 40.0% | |
| CAGAGAAGATTTGTCTGGAA+CGG | + | chr3.1:80321450-80321469 | MS.gene48465:CDS | 40.0% | |
| CATTGTGCTCAGCATAATTG+CGG | + | chr3.1:80319775-80319794 | MS.gene48465:CDS | 40.0% | |
| CCATTGACAAAAGATAGCAG+AGG | - | chr3.1:80319929-80319948 | None:intergenic | 40.0% | |
| CTCTTCATGCTTGTCATGAA+AGG | - | chr3.1:80320923-80320942 | None:intergenic | 40.0% | |
| GAAATCAACCGAGGCAATAT+TGG | - | chr3.1:80320020-80320039 | None:intergenic | 40.0% | |
| GTTCATCTGTGGATTTGGAT+TGG | - | chr3.1:80319844-80319863 | None:intergenic | 40.0% | |
| TACAGGAGGTTTGACGAATA+TGG | + | chr3.1:80321237-80321256 | MS.gene48465:CDS | 40.0% | |
| TCATGAAAGGAACCTTGACT+AGG | - | chr3.1:80320910-80320929 | None:intergenic | 40.0% | |
| TGCATTTGCAAAGATGAGGT+TGG | - | chr3.1:80320807-80320826 | None:intergenic | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | + | chr3.1:80320737-80320756 | MS.gene48465:CDS | 40.0% | |
| TGGTCAAAGAAACCTTGGTT+AGG | - | chr3.1:80319685-80319704 | None:intergenic | 40.0% | |
| TGGTCAGCTACAAAGTCTAT+CGG | - | chr3.1:80321412-80321431 | None:intergenic | 40.0% | |
| ! | AAACTTCAAAGGAGCATGGT+CGG | + | chr3.1:80320829-80320848 | MS.gene48465:CDS | 40.0% |
| ! | AACAACCCATCTTTTGCATC+AGG | - | chr3.1:80321055-80321074 | None:intergenic | 40.0% |
| ! | CAAGGATTTGAGTTCATCTG+TGG | - | chr3.1:80319855-80319874 | None:intergenic | 40.0% |
| ! | CACATAAGAAACGAGTTGAG+AGG | - | chr3.1:80319879-80319898 | None:intergenic | 40.0% |
| ! | CCTCTGCTATCTTTTGTCAA+TGG | + | chr3.1:80319926-80319945 | MS.gene48465:CDS | 40.0% |
| ! | GCAACAGTTTCTTTGAAGGA+AGG | - | chr3.1:80319983-80320002 | None:intergenic | 40.0% |
| ! | GTGAGAAGTTGATCTTGTGT+AGG | - | chr3.1:80319815-80319834 | None:intergenic | 40.0% |
| ! | GTTTTACCTTTCTCTACAGG+AGG | + | chr3.1:80321223-80321242 | MS.gene48465:CDS | 40.0% |
| ! | TCTGGAACGGTACTCTTTAT+TGG | + | chr3.1:80321463-80321482 | MS.gene48465:CDS | 40.0% |
| ! | TTTTAACACAAAGGAGGCAG+GGG | + | chr3.1:80320281-80320300 | MS.gene48465:intron | 40.0% |
| AGCACAATGTGGAGTGACAA+CGG | - | chr3.1:80319764-80319783 | None:intergenic | 45.0% | |
| AGGAGGTTTGACGAATATGG+TGG | + | chr3.1:80321240-80321259 | MS.gene48465:CDS | 45.0% | |
| CTCGAGAAACAGTGAGAGTA+GGG | + | chr3.1:80321128-80321147 | MS.gene48465:CDS | 45.0% | |
| GCTACAAAGTCTATCGGAGT+CGG | - | chr3.1:80321406-80321425 | None:intergenic | 45.0% | |
| GTCAAACCTCCTGTAGAGAA+AGG | - | chr3.1:80321232-80321251 | None:intergenic | 45.0% | |
| TCGAGAAACAGTGAGAGTAG+GGG | + | chr3.1:80321129-80321148 | MS.gene48465:CDS | 45.0% | |
| TGAAACTTCTGGCGTACTGA+AGG | + | chr3.1:80321189-80321208 | MS.gene48465:CDS | 45.0% | |
| ! | AGAAACGAGTTGAGAGGACA+AGG | - | chr3.1:80319873-80319892 | None:intergenic | 45.0% |
| ! | ATGGGACAAAAGTGCACATG+TGG | + | chr3.1:80321361-80321380 | MS.gene48465:CDS | 45.0% |
| ! | CATCTGTGGATTTGGATTGG+AGG | - | chr3.1:80319841-80319860 | None:intergenic | 45.0% |
| ! | GACAAAAGTGCACATGTGGT+AGG | + | chr3.1:80321365-80321384 | MS.gene48465:CDS | 45.0% |
| ! | GCTTTTGGGCTTGAAACTTC+TGG | + | chr3.1:80321178-80321197 | MS.gene48465:CDS | 45.0% |
| ! | TGTGCACTTTTGTCCCATAG+AGG | - | chr3.1:80321359-80321378 | None:intergenic | 45.0% |
| ! | TGTGGATTTGGATTGGAGGA+AGG | - | chr3.1:80319837-80319856 | None:intergenic | 45.0% |
| !! | GAATATGGTGGACTCTCCTA+TGG | + | chr3.1:80321252-80321271 | MS.gene48465:CDS | 45.0% |
| AAAAGATAGCAGAGGTCCGC+CGG | - | chr3.1:80319921-80319940 | None:intergenic | 50.0% | |
| AAAGGGAACTGAAGCTGCTG+CGG | + | chr3.1:80321330-80321349 | MS.gene48465:CDS | 50.0% | |
| ACAAAGTCTATCGGAGTCGG+TGG | - | chr3.1:80321403-80321422 | None:intergenic | 50.0% | |
| CCTCGAGAAACAGTGAGAGT+AGG | + | chr3.1:80321127-80321146 | MS.gene48465:CDS | 50.0% | |
| CTTGTTCGCGAAATCAACCG+AGG | - | chr3.1:80320029-80320048 | None:intergenic | 50.0% | |
| GGAGAACAAGTGTTTGGCGA+TGG | - | chr3.1:80319705-80319724 | None:intergenic | 50.0% | |
| GGCGATGGTCAAAGAAACCT+TGG | - | chr3.1:80319690-80319709 | None:intergenic | 50.0% | |
| TCTCAATGGCAGCCTAGTCA+AGG | + | chr3.1:80320895-80320914 | MS.gene48465:CDS | 50.0% | |
| TGACTAGGCTGCCATTGAGA+AGG | - | chr3.1:80320895-80320914 | None:intergenic | 50.0% | |
| ! | CCTACTCTCACTGTTTCTCG+AGG | - | chr3.1:80321130-80321149 | None:intergenic | 50.0% |
| ! | CTCGGTTGATTTCGCGAACA+AGG | + | chr3.1:80320027-80320046 | MS.gene48465:CDS | 50.0% |
| AAGTCTATCGGAGTCGGTGG+AGG | - | chr3.1:80321400-80321419 | None:intergenic | 55.0% | |
| AGTCTATCGGAGTCGGTGGA+GGG | - | chr3.1:80321399-80321418 | None:intergenic | 55.0% | |
| CGTACTGAAGGAGCTGGGAA+TGG | + | chr3.1:80321201-80321220 | MS.gene48465:CDS | 55.0% | |
| GTGCTCAGCATAATTGCGGC+CGG | + | chr3.1:80319779-80319798 | MS.gene48465:CDS | 55.0% | |
| TCTGGCGTACTGAAGGAGCT+GGG | + | chr3.1:80321196-80321215 | MS.gene48465:CDS | 55.0% | |
| TGCACATGTGGTAGGCGTAC+TGG | + | chr3.1:80321373-80321392 | MS.gene48465:CDS | 55.0% | |
| TTCTGGCGTACTGAAGGAGC+TGG | + | chr3.1:80321195-80321214 | MS.gene48465:CDS | 55.0% | |
| ! | AAAGGAGGCAGGGGCACATA+TGG | + | chr3.1:80320290-80320309 | MS.gene48465:intron | 55.0% |
| ! | CTTCAAAGGAGCATGGTCGG+AGG | + | chr3.1:80320832-80320851 | MS.gene48465:CDS | 55.0% |
| TTGTGTAGGACCCTCAGCGC+CGG | - | chr3.1:80319801-80319820 | None:intergenic | 60.0% | |
| ! | ATAATTGCGGCCGGCGCTGA+GGG | + | chr3.1:80319788-80319807 | MS.gene48465:CDS | 60.0% |
| AGCTGCTGCGGCGACCTCTA+TGG | + | chr3.1:80321342-80321361 | MS.gene48465:CDS | 65.0% | |
| CATAATTGCGGCCGGCGCTG+AGG | + | chr3.1:80319787-80319806 | MS.gene48465:CDS | 65.0% | |
| CTTGCCGATGCCACTCCAGC+CGG | + | chr3.1:80319899-80319918 | MS.gene48465:CDS | 65.0% | |
| GCTGCTGCGGCGACCTCTAT+GGG | + | chr3.1:80321343-80321362 | MS.gene48465:CDS | 65.0% | |
| GATAGCAGAGGTCCGCCGGC+TGG | - | chr3.1:80319917-80319936 | None:intergenic | 70.0% | |
| ! | TCCGCCGGCTGGAGTGGCAT+CGG | - | chr3.1:80319906-80319925 | None:intergenic | 70.0% |
| GCCGATGCCACTCCAGCCGG+CGG | + | chr3.1:80319902-80319921 | MS.gene48465:CDS | 75.0% | |
| ! | CAGAGGTCCGCCGGCTGGAG+TGG | - | chr3.1:80319912-80319931 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 80319653 | 80321513 | 80319653 | ID=MS.gene48465 |
| chr3.1 | mRNA | 80319653 | 80321513 | 80319653 | ID=MS.gene48465.t1;Parent=MS.gene48465 |
| chr3.1 | exon | 80319653 | 80320048 | 80319653 | ID=MS.gene48465.t1.exon1;Parent=MS.gene48465.t1 |
| chr3.1 | CDS | 80319653 | 80320048 | 80319653 | ID=cds.MS.gene48465.t1;Parent=MS.gene48465.t1 |
| chr3.1 | exon | 80320707 | 80321513 | 80320707 | ID=MS.gene48465.t1.exon2;Parent=MS.gene48465.t1 |
| chr3.1 | CDS | 80320707 | 80321513 | 80320707 | ID=cds.MS.gene48465.t1;Parent=MS.gene48465.t1 |
| Gene Sequence |
| Protein sequence |
