Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48466.t1 | TKY75106.1 | 71.2 | 393 | 109 | 3 | 1 | 393 | 1 | 389 | 3.60E-151 | 544.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48466.t1 | Q9S7T8 | 53.8 | 392 | 176 | 4 | 1 | 390 | 1 | 389 | 6.7e-114 | 412.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48466.t1 | A0A445K4G0 | 70.0 | 390 | 113 | 2 | 1 | 390 | 1 | 386 | 3.4e-151 | 544.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene48466 | MS.gene045585 | PPI |
| MS.gene006610 | MS.gene48466 | PPI |
| MS.gene48466 | MS.gene065944 | PPI |
| MS.gene065945 | MS.gene48466 | PPI |
| MS.gene48466 | MS.gene031697 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48466.t1 | MTR_3g101190 | 73.028 | 393 | 25 | 3 | 1 | 393 | 1 | 312 | 0.0 | 536 |
| MS.gene48466.t1 | MTR_3g018740 | 68.702 | 393 | 114 | 4 | 1 | 391 | 1 | 386 | 0.0 | 531 |
| MS.gene48466.t1 | MTR_3g101010 | 67.430 | 393 | 124 | 2 | 1 | 393 | 1 | 389 | 0.0 | 527 |
| MS.gene48466.t1 | MTR_7g451890 | 63.939 | 391 | 141 | 0 | 3 | 393 | 12 | 402 | 0.0 | 514 |
| MS.gene48466.t1 | MTR_4g045707 | 64.615 | 390 | 132 | 2 | 4 | 393 | 5 | 388 | 0.0 | 510 |
| MS.gene48466.t1 | MTR_7g047780 | 64.286 | 392 | 138 | 2 | 3 | 393 | 12 | 402 | 1.27e-180 | 508 |
| MS.gene48466.t1 | MTR_8g461160 | 66.925 | 387 | 128 | 0 | 5 | 391 | 6 | 392 | 7.98e-180 | 506 |
| MS.gene48466.t1 | MTR_3g101180 | 64.662 | 399 | 134 | 3 | 1 | 392 | 1 | 399 | 1.18e-179 | 505 |
| MS.gene48466.t1 | MTR_7g050750 | 63.520 | 392 | 141 | 2 | 3 | 393 | 6 | 396 | 5.94e-179 | 503 |
| MS.gene48466.t1 | MTR_8g027395 | 64.962 | 391 | 129 | 3 | 3 | 393 | 15 | 397 | 2.27e-177 | 499 |
| MS.gene48466.t1 | MTR_7g050810 | 63.683 | 391 | 142 | 0 | 3 | 393 | 14 | 404 | 7.16e-176 | 496 |
| MS.gene48466.t1 | MTR_3g101130 | 63.452 | 394 | 138 | 3 | 1 | 393 | 1 | 389 | 7.04e-172 | 485 |
| MS.gene48466.t1 | MTR_3g101030 | 60.199 | 402 | 140 | 4 | 8 | 393 | 32 | 429 | 2.09e-168 | 478 |
| MS.gene48466.t1 | MTR_3g048000 | 61.598 | 388 | 124 | 5 | 6 | 392 | 28 | 391 | 8.83e-164 | 465 |
| MS.gene48466.t1 | MTR_8g027420 | 62.245 | 392 | 127 | 5 | 3 | 393 | 4 | 375 | 9.09e-163 | 461 |
| MS.gene48466.t1 | MTR_2g046030 | 60.253 | 395 | 144 | 5 | 1 | 391 | 1 | 386 | 2.32e-162 | 461 |
| MS.gene48466.t1 | MTR_4g088525 | 64.088 | 362 | 124 | 1 | 29 | 390 | 11 | 366 | 6.11e-162 | 459 |
| MS.gene48466.t1 | MTR_2g045980 | 60.000 | 395 | 145 | 5 | 1 | 391 | 1 | 386 | 1.74e-160 | 456 |
| MS.gene48466.t1 | MTR_3g015620 | 61.697 | 389 | 121 | 5 | 5 | 391 | 16 | 378 | 3.54e-156 | 445 |
| MS.gene48466.t1 | MTR_4g088535 | 60.309 | 388 | 130 | 5 | 5 | 392 | 7 | 370 | 2.19e-152 | 436 |
| MS.gene48466.t1 | MTR_3g101050 | 60.622 | 386 | 129 | 5 | 8 | 391 | 32 | 396 | 6.57e-152 | 435 |
| MS.gene48466.t1 | MTR_3g102920 | 56.771 | 384 | 122 | 6 | 13 | 392 | 66 | 409 | 2.99e-143 | 413 |
| MS.gene48466.t1 | MTR_3g101200 | 54.476 | 391 | 149 | 5 | 3 | 392 | 29 | 391 | 5.62e-130 | 379 |
| MS.gene48466.t1 | MTR_7g050830 | 57.595 | 316 | 103 | 2 | 3 | 298 | 14 | 318 | 2.86e-122 | 357 |
| MS.gene48466.t1 | MTR_3g100995 | 63.707 | 259 | 89 | 2 | 135 | 393 | 11 | 264 | 4.52e-115 | 336 |
| MS.gene48466.t1 | MTR_3g100010 | 54.545 | 319 | 97 | 2 | 27 | 312 | 37 | 340 | 1.60e-112 | 333 |
| MS.gene48466.t1 | MTR_3g018747 | 62.595 | 262 | 80 | 4 | 131 | 391 | 9 | 253 | 3.25e-106 | 313 |
| MS.gene48466.t1 | MTR_3g015760 | 59.058 | 276 | 101 | 4 | 120 | 391 | 12 | 279 | 3.82e-105 | 311 |
| MS.gene48466.t1 | MTR_3g114310 | 41.542 | 402 | 210 | 13 | 6 | 393 | 20 | 410 | 2.49e-86 | 268 |
| MS.gene48466.t1 | MTR_3g100520 | 61.161 | 224 | 70 | 3 | 172 | 393 | 1 | 209 | 2.02e-85 | 258 |
| MS.gene48466.t1 | MTR_3g111160 | 63.208 | 212 | 73 | 3 | 183 | 393 | 13 | 220 | 2.20e-84 | 256 |
| MS.gene48466.t1 | MTR_3g101110 | 58.898 | 236 | 69 | 3 | 134 | 367 | 71 | 280 | 9.23e-82 | 252 |
| MS.gene48466.t1 | MTR_3g099970 | 63.265 | 196 | 55 | 2 | 131 | 326 | 20 | 198 | 7.36e-80 | 244 |
| MS.gene48466.t1 | MTR_2g046410 | 60.000 | 205 | 74 | 3 | 191 | 391 | 147 | 347 | 5.61e-79 | 247 |
| MS.gene48466.t1 | MTR_3g101150 | 67.722 | 158 | 49 | 1 | 237 | 392 | 1 | 158 | 6.65e-68 | 212 |
| MS.gene48466.t1 | MTR_3g101020 | 54.497 | 189 | 57 | 2 | 205 | 393 | 1 | 160 | 3.22e-60 | 192 |
| MS.gene48466.t1 | MTR_3g111150 | 57.714 | 175 | 48 | 3 | 10 | 184 | 4 | 152 | 6.02e-59 | 189 |
| MS.gene48466.t1 | MTR_3g102870 | 59.006 | 161 | 65 | 1 | 194 | 353 | 1 | 161 | 5.32e-57 | 184 |
| MS.gene48466.t1 | MTR_3g100990 | 64.885 | 131 | 44 | 1 | 1 | 131 | 1 | 129 | 3.27e-47 | 168 |
| MS.gene48466.t1 | MTR_4g093550 | 58.140 | 86 | 34 | 1 | 5 | 90 | 6 | 89 | 4.28e-22 | 90.1 |
| MS.gene48466.t1 | MTR_3g101140 | 60.000 | 70 | 27 | 1 | 324 | 393 | 48 | 116 | 1.18e-19 | 84.3 |
| MS.gene48466.t1 | MTR_6g046890 | 66.667 | 60 | 20 | 0 | 29 | 88 | 21 | 80 | 2.65e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48466.t1 | AT1G47710 | 53.690 | 393 | 177 | 4 | 1 | 391 | 1 | 390 | 1.30e-146 | 421 |
| MS.gene48466.t1 | AT1G47710 | 53.690 | 393 | 177 | 4 | 1 | 391 | 28 | 417 | 1.33e-145 | 420 |
| MS.gene48466.t1 | AT2G25240 | 48.731 | 394 | 186 | 8 | 1 | 390 | 1 | 382 | 3.80e-119 | 351 |
| MS.gene48466.t1 | AT3G45220 | 45.297 | 404 | 193 | 6 | 1 | 390 | 1 | 390 | 1.27e-117 | 347 |
| MS.gene48466.t1 | AT2G26390 | 46.482 | 398 | 193 | 8 | 1 | 390 | 1 | 386 | 9.86e-116 | 342 |
| MS.gene48466.t1 | AT1G64030 | 42.132 | 394 | 201 | 6 | 1 | 390 | 1 | 371 | 1.71e-103 | 311 |
| MS.gene48466.t1 | AT1G62170 | 40.806 | 397 | 201 | 7 | 1 | 390 | 62 | 431 | 3.89e-102 | 309 |
| MS.gene48466.t1 | AT2G14540 | 40.967 | 393 | 205 | 6 | 1 | 390 | 29 | 397 | 1.41e-99 | 302 |
| MS.gene48466.t1 | AT2G35580 | 43.467 | 398 | 176 | 11 | 1 | 390 | 15 | 371 | 7.18e-99 | 299 |
| MS.gene48466.t1 | AT1G62170 | 37.674 | 430 | 201 | 8 | 1 | 390 | 62 | 464 | 4.33e-95 | 292 |
| MS.gene48466.t1 | AT1G64010 | 47.273 | 220 | 90 | 5 | 172 | 390 | 1 | 195 | 3.62e-64 | 204 |
| MS.gene48466.t1 | AT1G64010 | 46.569 | 204 | 83 | 5 | 188 | 390 | 3 | 181 | 1.73e-56 | 184 |
| MS.gene48466.t1 | AT1G62160 | 43.716 | 183 | 74 | 5 | 211 | 390 | 62 | 218 | 3.87e-36 | 132 |
| MS.gene48466.t1 | AT1G63280 | 50.847 | 118 | 54 | 2 | 128 | 243 | 5 | 120 | 4.22e-33 | 120 |
| MS.gene48466.t1 | AT1G51330 | 49.541 | 109 | 52 | 3 | 132 | 237 | 32 | 140 | 1.44e-25 | 102 |
| MS.gene48466.t1 | AT1G64020 | 32.787 | 122 | 79 | 3 | 1 | 121 | 1 | 120 | 5.44e-15 | 71.2 |
Find 73 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGGAACTATACTCTTTAT+TGG | 0.166831 | 3.1:-80326893 | MS.gene48466:CDS |
| GAAATGATGGTGGGGTGTTC+AGG | 0.220765 | 3.1:-80326989 | MS.gene48466:CDS |
| GTTCTCCAAACAAGAATTTC+AGG | 0.221673 | 3.1:-80328535 | MS.gene48466:CDS |
| AGTCCATAAATTCACTTCTT+TGG | 0.232769 | 3.1:+80327618 | None:intergenic |
| TGGCCAAAGAAGTGAATTTA+TGG | 0.253715 | 3.1:-80327621 | MS.gene48466:CDS |
| AATTGTGGCTACTGATTATA+AGG | 0.260864 | 3.1:-80328259 | MS.gene48466:CDS |
| GGCTTCTGAATCAGAGTTCT+TGG | 0.266325 | 3.1:-80327260 | MS.gene48466:CDS |
| ATGATCAAAGAAGATTCTTC+TGG | 0.286141 | 3.1:-80326911 | MS.gene48466:CDS |
| CTTGTCCTGAAATTCTTGTT+TGG | 0.301922 | 3.1:+80328530 | None:intergenic |
| TCAGCTACAAAGTCTATTTC+AGG | 0.302912 | 3.1:+80326950 | None:intergenic |
| ATTAAGATGATCCGTGGATT+TGG | 0.324605 | 3.1:+80328407 | None:intergenic |
| CCTTGCCTCTCTTTCGTCAA+TGG | 0.325177 | 3.1:-80328327 | MS.gene48466:CDS |
| GGATGAAAAGTTCAATACTA+TGG | 0.335215 | 3.1:-80327491 | MS.gene48466:CDS |
| TTCAGTTGATTTCAAAACTA+AGG | 0.359442 | 3.1:-80328226 | MS.gene48466:intron |
| AGAAACAAGTTGAGAGGATA+AGG | 0.393608 | 3.1:+80328383 | None:intergenic |
| TCTGATGCTGCTCCCCTTGG+CGG | 0.402450 | 3.1:-80328351 | MS.gene48466:CDS |
| CAAAGGAAGGTTGAAGAGGA+AGG | 0.407458 | 3.1:+80328286 | None:intergenic |
| AAGTGAAAGTAAATGACTTC+AGG | 0.409355 | 3.1:-80327216 | MS.gene48466:CDS |
| TTCTCTGATGCTGCTCCCCT+TGG | 0.414206 | 3.1:-80328354 | MS.gene48466:CDS |
| AGCACATGATGCAGCAGCTT+CGG | 0.414718 | 3.1:+80327015 | None:intergenic |
| AAATGATGGTGGGGTGTTCA+GGG | 0.419727 | 3.1:-80326988 | MS.gene48466:CDS |
| ATCATTCGTGCTGGTTATGA+AGG | 0.424779 | 3.1:+80327417 | None:intergenic |
| TACTGATTATAAGGCCACTT+TGG | 0.440391 | 3.1:-80328250 | MS.gene48466:CDS |
| TTTCTTCCAGATACAAAAGA+TGG | 0.444491 | 3.1:-80327307 | MS.gene48466:CDS |
| CTGATGCTGCTCCCCTTGGC+GGG | 0.446804 | 3.1:-80328350 | MS.gene48466:CDS |
| CTCATCTTTGATCGAGAAAG+TGG | 0.452062 | 3.1:-80327281 | MS.gene48466:CDS |
| GTCAAACCACCAGGATAGAA+AGG | 0.456529 | 3.1:+80327124 | None:intergenic |
| TTCATTGAAGTAAAAGAAGA+AGG | 0.457204 | 3.1:-80327040 | MS.gene48466:CDS |
| GCAAATGCATTGTACTTCAA+AGG | 0.467497 | 3.1:-80327520 | MS.gene48466:CDS |
| GTTGATCTACCTTTCTATCC+TGG | 0.472853 | 3.1:-80327133 | MS.gene48466:CDS |
| CTTTGCCTTCCTTATAAACA+AGG | 0.477658 | 3.1:-80327361 | MS.gene48466:CDS |
| TCAAATGTGCTCAAGGAACT+AGG | 0.489223 | 3.1:-80327157 | MS.gene48466:CDS |
| TGATGTTGAGCACAACTTGA+AGG | 0.493358 | 3.1:+80328484 | None:intergenic |
| AAGAGAGGCAAGGCCCGCCA+AGG | 0.494015 | 3.1:+80328337 | None:intergenic |
| AAAGGAAGGTTGAAGAGGAA+GGG | 0.495469 | 3.1:+80328287 | None:intergenic |
| TCTCTTTCGTCAATGGTGCA+TGG | 0.506157 | 3.1:-80328320 | MS.gene48466:CDS |
| ATGTATGATCACCCAACAAA+AGG | 0.506228 | 3.1:+80326857 | None:intergenic |
| ATCATAGCTGCTGGCTCCGA+CGG | 0.531432 | 3.1:-80328465 | MS.gene48466:CDS |
| GTGCTCAACATCATAGCTGC+TGG | 0.532004 | 3.1:-80328474 | MS.gene48466:CDS |
| TCTCAATGGCAGCTCGGTCA+AGG | 0.533918 | 3.1:-80327443 | MS.gene48466:CDS |
| GATGTTGAGCACAACTTGAA+GGG | 0.546596 | 3.1:+80328485 | None:intergenic |
| TGAAACTTCAAATGTGCTCA+AGG | 0.549268 | 3.1:-80327164 | MS.gene48466:CDS |
| AGAGAGGCAAGGCCCGCCAA+GGG | 0.554030 | 3.1:+80328338 | None:intergenic |
| ATCATGTGCTTTAGAAATGA+TGG | 0.556106 | 3.1:-80327002 | MS.gene48466:CDS |
| TCACCTTCTCAATGGCAGCT+CGG | 0.558670 | 3.1:-80327449 | MS.gene48466:CDS |
| GAAATCAACTGAAGCCAAAG+TGG | 0.562346 | 3.1:+80328236 | None:intergenic |
| TGATCATAAACATGAAAGGA+TGG | 0.563748 | 3.1:+80326927 | None:intergenic |
| CATTGTACTTCAAAGGAGCA+TGG | 0.565962 | 3.1:-80327513 | MS.gene48466:CDS |
| ATTAAAACAATTCTTCCACC+CGG | 0.573606 | 3.1:-80327574 | MS.gene48466:CDS |
| GAGCACAACTTGAAGGGACA+AGG | 0.579072 | 3.1:+80328491 | None:intergenic |
| GATCTACCTTTCTATCCTGG+TGG | 0.579838 | 3.1:-80327130 | MS.gene48466:CDS |
| TCTTTGATCATAAACATGAA+AGG | 0.580563 | 3.1:+80326923 | None:intergenic |
| GATAAACTGATCATTCGTGC+TGG | 0.581522 | 3.1:+80327408 | None:intergenic |
| GATGATCCGTGGATTTGGAT+CGG | 0.583074 | 3.1:+80328412 | None:intergenic |
| TGACCGAGCTGCCATTGAGA+AGG | 0.601435 | 3.1:+80327446 | None:intergenic |
| ATTGTACTTCAAAGGAGCAT+GGG | 0.603172 | 3.1:-80327512 | MS.gene48466:CDS |
| CACAGAAGAAACAAGTTGAG+AGG | 0.605430 | 3.1:+80328377 | None:intergenic |
| TCATTCGTGCTGGTTATGAA+GGG | 0.623826 | 3.1:+80327418 | None:intergenic |
| AGTTGAGTCATCTATCGACC+CGG | 0.625431 | 3.1:+80327555 | None:intergenic |
| TAAGGAATTAAGATGATCCG+TGG | 0.630614 | 3.1:+80328401 | None:intergenic |
| GCTACAAAGTCTATTTCAGG+TGG | 0.631861 | 3.1:+80326953 | None:intergenic |
| ATGCACCATTGACGAAAGAG+AGG | 0.636350 | 3.1:+80328322 | None:intergenic |
| GAGAGGCAAGGCCCGCCAAG+GGG | 0.636835 | 3.1:+80328339 | None:intergenic |
| TTAAAACAATTCTTCCACCC+GGG | 0.646309 | 3.1:-80327573 | MS.gene48466:CDS |
| TTTCCTCCGATCCAAATCCA+CGG | 0.646951 | 3.1:-80328418 | MS.gene48466:CDS |
| TGTGCTTTAGAAATGATGGT+GGG | 0.662254 | 3.1:-80326998 | MS.gene48466:CDS |
| AGCACAACTTGAAGGGACAA+GGG | 0.672805 | 3.1:+80328492 | None:intergenic |
| GTTGAGTCATCTATCGACCC+GGG | 0.681741 | 3.1:+80327556 | None:intergenic |
| GATCCGTGGATTTGGATCGG+AGG | 0.683754 | 3.1:+80328415 | None:intergenic |
| ATGTGCTTTAGAAATGATGG+TGG | 0.710043 | 3.1:-80326999 | MS.gene48466:CDS |
| GTGCTTTAGAAATGATGGTG+GGG | 0.715918 | 3.1:-80326997 | MS.gene48466:CDS |
| CCATTGACGAAAGAGAGGCA+AGG | 0.723051 | 3.1:+80328327 | None:intergenic |
| GAGTCATCTATCGACCCGGG+TGG | 0.731376 | 3.1:+80327559 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAAATTATTATTTTAT+TGG | + | chr3.1:80327301-80327320 | None:intergenic | 0.0% |
| !!! | AATTTTCTTACTTTTTTTAA+CGG | + | chr3.1:80327395-80327414 | None:intergenic | 10.0% |
| !!! | CTTATATTTGATATTTTTAA+AGG | - | chr3.1:80327809-80327828 | MS.gene48466:intron | 10.0% |
| !! | AAAAAAGTAAGAAAATTCTT+TGG | - | chr3.1:80327398-80327417 | MS.gene48466:CDS | 15.0% |
| !!! | GAAATATTTTAGAAACATAA+AGG | + | chr3.1:80328394-80328413 | None:intergenic | 15.0% |
| !!! | ACAAATATTTTGTGATTTTG+AGG | + | chr3.1:80326909-80326928 | None:intergenic | 20.0% |
| !!! | CAAATATTTTGTGATTTTGA+GGG | + | chr3.1:80326908-80326927 | None:intergenic | 20.0% |
| !!! | TCAAATGATATTTTGAATCT+TGG | + | chr3.1:80328275-80328294 | None:intergenic | 20.0% |
| !!! | TTATCTTTTCCTTGTTTATA+AGG | + | chr3.1:80328113-80328132 | None:intergenic | 20.0% |
| !!! | TTTACTTTCACTTTTTTGTT+AGG | + | chr3.1:80328239-80328258 | None:intergenic | 20.0% |
| ! | TCTTTGATCATAAACATGAA+AGG | + | chr3.1:80328542-80328561 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAAAGAAGA+AGG | - | chr3.1:80328422-80328441 | MS.gene48466:CDS | 25.0% |
| !! | TATTTTATTGGAAATAGACC+AGG | + | chr3.1:80327289-80327308 | None:intergenic | 25.0% |
| !! | TTCAGTTGATTTCAAAACTA+AGG | - | chr3.1:80327236-80327255 | MS.gene48466:CDS | 25.0% |
| !!! | TCAATCATTTTTTGACATCA+AGG | + | chr3.1:80327350-80327369 | None:intergenic | 25.0% |
| AAGTGAAAGTAAATGACTTC+AGG | - | chr3.1:80328246-80328265 | MS.gene48466:CDS | 30.0% | |
| AGTCCATAAATTCACTTCTT+TGG | + | chr3.1:80327847-80327866 | None:intergenic | 30.0% | |
| ATGATCAAAGAAGATTCTTC+TGG | - | chr3.1:80328551-80328570 | MS.gene48466:CDS | 30.0% | |
| ATTAAAACAATTCTTCCACC+CGG | - | chr3.1:80327888-80327907 | MS.gene48466:intron | 30.0% | |
| ATTATACCTGATAACAGAGA+AGG | + | chr3.1:80327695-80327714 | None:intergenic | 30.0% | |
| GGATGAAAAGTTCAATACTA+TGG | - | chr3.1:80327971-80327990 | MS.gene48466:intron | 30.0% | |
| GTATTCAACAAATTGATGAG+CGG | - | chr3.1:80327738-80327757 | MS.gene48466:intron | 30.0% | |
| TGATCATAAACATGAAAGGA+TGG | + | chr3.1:80328538-80328557 | None:intergenic | 30.0% | |
| TTTCTTCCAGATACAAAAGA+TGG | - | chr3.1:80328155-80328174 | MS.gene48466:intron | 30.0% | |
| ! | AATTGTGGCTACTGATTATA+AGG | - | chr3.1:80327203-80327222 | MS.gene48466:CDS | 30.0% |
| ! | ACCTTCCTTTGAAAAAATTG+TGG | - | chr3.1:80327188-80327207 | MS.gene48466:CDS | 30.0% |
| ! | TATGATTTTCACCTTCTCAA+TGG | - | chr3.1:80328005-80328024 | MS.gene48466:intron | 30.0% |
| ! | TCTGGAACTATACTCTTTAT+TGG | - | chr3.1:80328569-80328588 | MS.gene48466:CDS | 30.0% |
| ! | TGATGTTTTGCCAAAATAGA+TGG | - | chr3.1:80327641-80327660 | MS.gene48466:intron | 30.0% |
| ! | TTCTAACTTTGAAGAACCAA+AGG | + | chr3.1:80327520-80327539 | None:intergenic | 30.0% |
| !! | ATCATGTGCTTTAGAAATGA+TGG | - | chr3.1:80328460-80328479 | MS.gene48466:CDS | 30.0% |
| !! | ATTTTTAAAGGCAAGTGAAG+TGG | - | chr3.1:80327821-80327840 | MS.gene48466:intron | 30.0% |
| !! | CAGTTTATCAGTGTTTTTGA+TGG | - | chr3.1:80328068-80328087 | MS.gene48466:intron | 30.0% |
| !! | CTTTTCCTTGTTTATAAGGA+AGG | + | chr3.1:80328109-80328128 | None:intergenic | 30.0% |
| !!! | AGTAGCCACAATTTTTTCAA+AGG | + | chr3.1:80327196-80327215 | None:intergenic | 30.0% |
| ATTAAGATGATCCGTGGATT+TGG | + | chr3.1:80327058-80327077 | None:intergenic | 35.0% | |
| CTTGTCCTGAAATTCTTGTT+TGG | + | chr3.1:80326935-80326954 | None:intergenic | 35.0% | |
| CTTTGCCTTCCTTATAAACA+AGG | - | chr3.1:80328101-80328120 | MS.gene48466:intron | 35.0% | |
| GCAAATGCATTGTACTTCAA+AGG | - | chr3.1:80327942-80327961 | MS.gene48466:intron | 35.0% | |
| GTTCTCCAAACAAGAATTTC+AGG | - | chr3.1:80326927-80326946 | MS.gene48466:CDS | 35.0% | |
| TAAGGAATTAAGATGATCCG+TGG | + | chr3.1:80327064-80327083 | None:intergenic | 35.0% | |
| TATTGGAAATAGACCAGGAT+TGG | + | chr3.1:80327284-80327303 | None:intergenic | 35.0% | |
| TCAGCTACAAAGTCTATTTC+AGG | + | chr3.1:80328515-80328534 | None:intergenic | 35.0% | |
| TGAAACTTCAAATGTGCTCA+AGG | - | chr3.1:80328298-80328317 | MS.gene48466:CDS | 35.0% | |
| TGGACTGAAAAAGAGACAAA+TGG | - | chr3.1:80327861-80327880 | MS.gene48466:intron | 35.0% | |
| TGGCCAAAGAAGTGAATTTA+TGG | - | chr3.1:80327841-80327860 | MS.gene48466:intron | 35.0% | |
| TGTGTTATCGAGCAAAAAAG+AGG | - | chr3.1:80327445-80327464 | MS.gene48466:CDS | 35.0% | |
| TTAAAACAATTCTTCCACCC+GGG | - | chr3.1:80327889-80327908 | MS.gene48466:intron | 35.0% | |
| ! | AAGTGCTCAATCCTTTTGTT+GGG | - | chr3.1:80328594-80328613 | MS.gene48466:CDS | 35.0% |
| ! | AGAAACAAGTTGAGAGGATA+AGG | + | chr3.1:80327082-80327101 | None:intergenic | 35.0% |
| ! | ATTGTACTTCAAAGGAGCAT+GGG | - | chr3.1:80327950-80327969 | MS.gene48466:intron | 35.0% |
| ! | GCAAGACATACCATCTATTT+TGG | + | chr3.1:80327654-80327673 | None:intergenic | 35.0% |
| ! | TACTGATTATAAGGCCACTT+TGG | - | chr3.1:80327212-80327231 | MS.gene48466:CDS | 35.0% |
| ! | TTTTCAAAGGAAGGTTGAAG+AGG | + | chr3.1:80327183-80327202 | None:intergenic | 35.0% |
| !! | AATAGACCAGGATTGGTTTA+TGG | + | chr3.1:80327277-80327296 | None:intergenic | 35.0% |
| !! | ATAGACCAGGATTGGTTTAT+GGG | + | chr3.1:80327276-80327295 | None:intergenic | 35.0% |
| !! | ATGTGCTTTAGAAATGATGG+TGG | - | chr3.1:80328463-80328482 | MS.gene48466:CDS | 35.0% |
| !! | TGTGCTTTAGAAATGATGGT+GGG | - | chr3.1:80328464-80328483 | MS.gene48466:CDS | 35.0% |
| !!! | GACAGAAGTTGTTGTTTTGT+AGG | + | chr3.1:80327024-80327043 | None:intergenic | 35.0% |
| !!! | GCCACAATTTTTTCAAAGGA+AGG | + | chr3.1:80327192-80327211 | None:intergenic | 35.0% |
| AAAGGAAGGTTGAAGAGGAA+GGG | + | chr3.1:80327178-80327197 | None:intergenic | 40.0% | |
| ACCTGATAACAGAGAAGGTA+AGG | + | chr3.1:80327690-80327709 | None:intergenic | 40.0% | |
| ACCTTACCTTCTCTGTTATC+AGG | - | chr3.1:80327686-80327705 | MS.gene48466:intron | 40.0% | |
| CATTGTACTTCAAAGGAGCA+TGG | - | chr3.1:80327949-80327968 | MS.gene48466:intron | 40.0% | |
| CTCATCTTTGATCGAGAAAG+TGG | - | chr3.1:80328181-80328200 | MS.gene48466:intron | 40.0% | |
| GAAATCAACTGAAGCCAAAG+TGG | + | chr3.1:80327229-80327248 | None:intergenic | 40.0% | |
| GATAAACTGATCATTCGTGC+TGG | + | chr3.1:80328057-80328076 | None:intergenic | 40.0% | |
| GATGTTGAGCACAACTTGAA+GGG | + | chr3.1:80326980-80326999 | None:intergenic | 40.0% | |
| GCTACAAAGTCTATTTCAGG+TGG | + | chr3.1:80328512-80328531 | None:intergenic | 40.0% | |
| GTTGATCTACCTTTCTATCC+TGG | - | chr3.1:80328329-80328348 | MS.gene48466:CDS | 40.0% | |
| TCAAATGTGCTCAAGGAACT+AGG | - | chr3.1:80328305-80328324 | MS.gene48466:CDS | 40.0% | |
| TCCTGGTGGTTTGACAAAAA+TGG | - | chr3.1:80328346-80328365 | MS.gene48466:CDS | 40.0% | |
| TGATGTTGAGCACAACTTGA+AGG | + | chr3.1:80326981-80327000 | None:intergenic | 40.0% | |
| ! | CAAGTGCTCAATCCTTTTGT+TGG | - | chr3.1:80328593-80328612 | MS.gene48466:CDS | 40.0% |
| ! | CACAGAAGAAACAAGTTGAG+AGG | + | chr3.1:80327088-80327107 | None:intergenic | 40.0% |
| ! | CTTTTCCCATAAACCAATCC+TGG | - | chr3.1:80327268-80327287 | MS.gene48466:CDS | 40.0% |
| ! | GAGAGTCCATCTTTTGTATC+TGG | + | chr3.1:80328164-80328183 | None:intergenic | 40.0% |
| !! | ACCATTTTTGTCAAACCACC+AGG | + | chr3.1:80328350-80328369 | None:intergenic | 40.0% |
| !! | ATCATTCGTGCTGGTTATGA+AGG | + | chr3.1:80328048-80328067 | None:intergenic | 40.0% |
| !! | GTGCTTTAGAAATGATGGTG+GGG | - | chr3.1:80328465-80328484 | MS.gene48466:CDS | 40.0% |
| !! | TCATTCGTGCTGGTTATGAA+GGG | + | chr3.1:80328047-80328066 | None:intergenic | 40.0% |
| !!! | TTGTTGTTTTGTAGGACCGT+CGG | + | chr3.1:80327016-80327035 | None:intergenic | 40.0% |
| AGCACAACTTGAAGGGACAA+GGG | + | chr3.1:80326973-80326992 | None:intergenic | 45.0% | |
| AGTTGAGTCATCTATCGACC+CGG | + | chr3.1:80327910-80327929 | None:intergenic | 45.0% | |
| ATGCACCATTGACGAAAGAG+AGG | + | chr3.1:80327143-80327162 | None:intergenic | 45.0% | |
| CAAAGGAAGGTTGAAGAGGA+AGG | + | chr3.1:80327179-80327198 | None:intergenic | 45.0% | |
| GAAGAACCAAAGGTTCTGTG+CGG | + | chr3.1:80327510-80327529 | None:intergenic | 45.0% | |
| GATCTACCTTTCTATCCTGG+TGG | - | chr3.1:80328332-80328351 | MS.gene48466:CDS | 45.0% | |
| GATGATCCGTGGATTTGGAT+CGG | + | chr3.1:80327053-80327072 | None:intergenic | 45.0% | |
| GGCTTCTGAATCAGAGTTCT+TGG | - | chr3.1:80328202-80328221 | MS.gene48466:intron | 45.0% | |
| GTCAAACCACCAGGATAGAA+AGG | + | chr3.1:80328341-80328360 | None:intergenic | 45.0% | |
| TCTCTTTCGTCAATGGTGCA+TGG | - | chr3.1:80327142-80327161 | MS.gene48466:CDS | 45.0% | |
| TTTCCTCCGATCCAAATCCA+CGG | - | chr3.1:80327044-80327063 | MS.gene48466:CDS | 45.0% | |
| !! | AAATGATGGTGGGGTGTTCA+GGG | - | chr3.1:80328474-80328493 | MS.gene48466:CDS | 45.0% |
| AGCACATGATGCAGCAGCTT+CGG | + | chr3.1:80328450-80328469 | None:intergenic | 50.0% | |
| CCATTGACGAAAGAGAGGCA+AGG | + | chr3.1:80327138-80327157 | None:intergenic | 50.0% | |
| CCTTGCCTCTCTTTCGTCAA+TGG | - | chr3.1:80327135-80327154 | MS.gene48466:CDS | 50.0% | |
| GAGCACAACTTGAAGGGACA+AGG | + | chr3.1:80326974-80326993 | None:intergenic | 50.0% | |
| GTGCTCAACATCATAGCTGC+TGG | - | chr3.1:80326988-80327007 | MS.gene48466:CDS | 50.0% | |
| GTTGAGTCATCTATCGACCC+GGG | + | chr3.1:80327909-80327928 | None:intergenic | 50.0% | |
| TCACCTTCTCAATGGCAGCT+CGG | - | chr3.1:80328013-80328032 | MS.gene48466:intron | 50.0% | |
| !! | GAAATGATGGTGGGGTGTTC+AGG | - | chr3.1:80328473-80328492 | MS.gene48466:CDS | 50.0% |
| AACCAAAGGTTCTGTGCGGC+AGG | + | chr3.1:80327506-80327525 | None:intergenic | 55.0% | |
| GATCCGTGGATTTGGATCGG+AGG | + | chr3.1:80327050-80327069 | None:intergenic | 55.0% | |
| TCTCAATGGCAGCTCGGTCA+AGG | - | chr3.1:80328019-80328038 | MS.gene48466:intron | 55.0% | |
| TGACCGAGCTGCCATTGAGA+AGG | + | chr3.1:80328019-80328038 | None:intergenic | 55.0% | |
| TTCCTGCCGCACAGAACCTT+TGG | - | chr3.1:80327501-80327520 | MS.gene48466:CDS | 55.0% | |
| TTCTCTGATGCTGCTCCCCT+TGG | - | chr3.1:80327108-80327127 | MS.gene48466:CDS | 55.0% | |
| !! | ATCATAGCTGCTGGCTCCGA+CGG | - | chr3.1:80326997-80327016 | MS.gene48466:CDS | 55.0% |
| GAGTCATCTATCGACCCGGG+TGG | + | chr3.1:80327906-80327925 | None:intergenic | 60.0% | |
| TCTGATGCTGCTCCCCTTGG+CGG | - | chr3.1:80327111-80327130 | MS.gene48466:CDS | 60.0% | |
| AAGAGAGGCAAGGCCCGCCA+AGG | + | chr3.1:80327128-80327147 | None:intergenic | 65.0% | |
| AGAGAGGCAAGGCCCGCCAA+GGG | + | chr3.1:80327127-80327146 | None:intergenic | 65.0% | |
| CTGATGCTGCTCCCCTTGGC+GGG | - | chr3.1:80327112-80327131 | MS.gene48466:CDS | 65.0% | |
| GAGAGGCAAGGCCCGCCAAG+GGG | + | chr3.1:80327126-80327145 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 80326865 | 80328619 | 80326865 | ID=MS.gene48466 |
| chr3.1 | mRNA | 80326865 | 80328619 | 80326865 | ID=MS.gene48466.t1;Parent=MS.gene48466 |
| chr3.1 | exon | 80328227 | 80328619 | 80328227 | ID=MS.gene48466.t1.exon1;Parent=MS.gene48466.t1 |
| chr3.1 | CDS | 80328227 | 80328619 | 80328227 | ID=cds.MS.gene48466.t1;Parent=MS.gene48466.t1 |
| chr3.1 | exon | 80326865 | 80327653 | 80326865 | ID=MS.gene48466.t1.exon2;Parent=MS.gene48466.t1 |
| chr3.1 | CDS | 80326865 | 80327653 | 80326865 | ID=cds.MS.gene48466.t1;Parent=MS.gene48466.t1 |
| Gene Sequence |
| Protein sequence |
