Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49112.t1 | XP_003592260.2 | 89.3 | 456 | 49 | 0 | 1 | 456 | 1 | 456 | 7.80E-206 | 726.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49112.t1 | Q5XVA8 | 39.2 | 301 | 155 | 5 | 39 | 333 | 79 | 357 | 7.2e-35 | 149.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49112.t1 | G7IES8 | 89.3 | 456 | 49 | 0 | 1 | 456 | 1 | 456 | 5.6e-206 | 726.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene49112 | MS.gene063424 | PPI |
| MS.gene065578 | MS.gene49112 | PPI |
| MS.gene49112 | MS.gene51623 | PPI |
| MS.gene49112 | MS.gene84379 | PPI |
| MS.gene49112 | MS.gene009450 | PPI |
| MS.gene49112 | MS.gene56252 | PPI |
| MS.gene49112 | MS.gene059442 | PPI |
| MS.gene49112 | MS.gene059441 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49112.t1 | MTR_1g100880 | 94.737 | 456 | 24 | 0 | 1 | 456 | 1 | 456 | 0.0 | 857 |
| MS.gene49112.t1 | MTR_8g089685 | 36.364 | 308 | 178 | 5 | 125 | 426 | 334 | 629 | 1.79e-33 | 134 |
| MS.gene49112.t1 | MTR_8g089685 | 31.604 | 212 | 128 | 5 | 125 | 331 | 334 | 533 | 1.14e-15 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49112.t1 | AT3G49055 | 49.675 | 308 | 144 | 4 | 125 | 431 | 156 | 453 | 1.21e-73 | 239 |
| MS.gene49112.t1 | AT1G24560 | 36.228 | 334 | 195 | 7 | 125 | 452 | 351 | 672 | 4.13e-32 | 130 |
Find 88 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGAAAGGATTGCATTTC+TGG | 0.079330 | 1.3:-69059152 | None:intergenic |
| CTGTTGCAGTTTGCTGGGTT+TGG | 0.184783 | 1.3:+69057511 | MS.gene49112:CDS |
| TCAGAAGTGTAGGGTGAATT+TGG | 0.220164 | 1.3:-69056986 | None:intergenic |
| ATGCCTCTGTTGCAGTTTGC+TGG | 0.236292 | 1.3:+69057505 | MS.gene49112:CDS |
| CATTTCTGGTATCATCCTTT+TGG | 0.244152 | 1.3:-69059138 | None:intergenic |
| CACTCAATTGAGAAGATCTT+TGG | 0.250215 | 1.3:+69057874 | MS.gene49112:CDS |
| TGAATCCTTCACTTCAATAA+AGG | 0.291417 | 1.3:+69057159 | MS.gene49112:CDS |
| TAAAGGGACATGATCATAAA+AGG | 0.299279 | 1.3:+69057482 | MS.gene49112:CDS |
| TTATAAGGAGTTAAGGAAAA+AGG | 0.301417 | 1.3:+69057351 | MS.gene49112:CDS |
| CTTGCTCAGGGTTGCTTTGT+TGG | 0.308707 | 1.3:+69057435 | MS.gene49112:CDS |
| TGAATCGATGGTGTTGTTAT+TGG | 0.309677 | 1.3:+69057273 | MS.gene49112:CDS |
| AACAAAGGTGGAAAATTATA+AGG | 0.327278 | 1.3:+69057336 | MS.gene49112:CDS |
| CTCTGATTCCTCTAGTTGTC+TGG | 0.328896 | 1.3:-69059012 | None:intergenic |
| GGCATTGGAGAAGAAAATAA+AGG | 0.348101 | 1.3:+69057465 | MS.gene49112:CDS |
| CTCAAAACAGTTTCAAAGTA+AGG | 0.362902 | 1.3:-69057043 | None:intergenic |
| GATTGAAGAGCGTGACAAAA+TGG | 0.368630 | 1.3:+69058528 | MS.gene49112:CDS |
| TTCTCAATTGAGTGATTTCA+AGG | 0.377950 | 1.3:-69057865 | None:intergenic |
| AATATTGCTACCTCTAGAAT+TGG | 0.380419 | 1.3:+69059110 | MS.gene49112:CDS |
| TGAAGTGGAAGTTGTTAGTT+TGG | 0.382314 | 1.3:+69057633 | MS.gene49112:CDS |
| TGGAAAATTATAAGGAGTTA+AGG | 0.385060 | 1.3:+69057344 | MS.gene49112:CDS |
| ATTGTTGAGTTTGTACTGAT+TGG | 0.385832 | 1.3:-69056963 | None:intergenic |
| TGTCAGAGAAATAGTTTATG+AGG | 0.388736 | 1.3:+69057234 | MS.gene49112:CDS |
| GGAGAGTTTAGAGGGAGATA+AGG | 0.391100 | 1.3:+69057201 | MS.gene49112:CDS |
| TGCCTCTGTTGCAGTTTGCT+GGG | 0.398165 | 1.3:+69057506 | MS.gene49112:CDS |
| TAAAGTAAAGGAGAGTTTAG+AGG | 0.402816 | 1.3:+69057192 | MS.gene49112:CDS |
| GCAGAAAACAAAGGGTGCTT+TGG | 0.404761 | 1.3:+69058854 | MS.gene49112:CDS |
| GGTTTGGATTGCAGAAAGTT+GGG | 0.410174 | 1.3:+69057527 | MS.gene49112:CDS |
| TAAGCTTAACTGAAGAGAAT+AGG | 0.410456 | 1.3:+69057401 | MS.gene49112:CDS |
| CTGATTGGAGGATGGTTGAT+AGG | 0.410929 | 1.3:-69056948 | None:intergenic |
| GAAGATCTTTGGAAGAATCT+AGG | 0.411043 | 1.3:+69057885 | MS.gene49112:CDS |
| CTTTATCTGAATGAAGACTA+TGG | 0.417754 | 1.3:-69057018 | None:intergenic |
| GGGATATCAATAACTTGCTC+AGG | 0.421854 | 1.3:+69057422 | MS.gene49112:CDS |
| CAGAAGAAGAAGTAGCTAGA+TGG | 0.422068 | 1.3:+69058464 | MS.gene49112:CDS |
| ATGGAAGGAAGCTTGTGAAT+TGG | 0.425674 | 1.3:+69058483 | MS.gene49112:CDS |
| ACTCTCCTTTACTTTAGATA+AGG | 0.430837 | 1.3:-69057185 | None:intergenic |
| GGTTGCTTTGTTGGAGAAAG+AGG | 0.431213 | 1.3:+69057444 | MS.gene49112:CDS |
| AAGCTTAACTGAAGAGAATA+GGG | 0.435833 | 1.3:+69057402 | MS.gene49112:CDS |
| GGATTGCAGAAAGTTGGGTT+TGG | 0.447142 | 1.3:+69057532 | MS.gene49112:CDS |
| GGGTTTGGATTGCAGAAAGT+TGG | 0.462915 | 1.3:+69057526 | MS.gene49112:CDS |
| ATACACATTTCATTGAAGAA+AGG | 0.468708 | 1.3:-69059165 | None:intergenic |
| TTTGTTTCTCTGTGAGACAC+TGG | 0.481946 | 1.3:-69058241 | None:intergenic |
| GGAATCCTTTATTGAAGTGA+AGG | 0.481981 | 1.3:-69057164 | None:intergenic |
| AACCCAGCAAACTGCAACAG+AGG | 0.484357 | 1.3:-69057508 | None:intergenic |
| AGTTTGTACTGATTGGAGGA+TGG | 0.486757 | 1.3:-69056956 | None:intergenic |
| AAGAGGCAAGGTTAATATCA+AGG | 0.488668 | 1.3:+69057296 | MS.gene49112:CDS |
| TGTGAATTGGAAGTTAAAGC+TGG | 0.493325 | 1.3:+69058496 | MS.gene49112:CDS |
| AGAAGATAGAGAGAGAATCT+TGG | 0.496215 | 1.3:+69058304 | MS.gene49112:CDS |
| TGAACTTCGTCGGCAGATAG+AGG | 0.497803 | 1.3:+69058983 | MS.gene49112:CDS |
| CATTATCCTTTCCACTGTTG+AGG | 0.498340 | 1.3:-69057831 | None:intergenic |
| TTTGGATTCATGATGGGAGG+TGG | 0.499288 | 1.3:+69057550 | MS.gene49112:CDS |
| GTTGAGTTTGTACTGATTGG+AGG | 0.501346 | 1.3:-69056960 | None:intergenic |
| AGTTGGGTTTGGATTCATGA+TGG | 0.502092 | 1.3:+69057543 | MS.gene49112:CDS |
| AAAGTAAAGGAGAGTTTAGA+GGG | 0.505755 | 1.3:+69057193 | MS.gene49112:CDS |
| GCATTGGAGAAGAAAATAAA+GGG | 0.508904 | 1.3:+69057466 | MS.gene49112:CDS |
| AATGGCTGCAATAGCTGCAC+AGG | 0.512276 | 1.3:+69058917 | MS.gene49112:CDS |
| GATGGTGTTGTTATTGGAAG+AGG | 0.522243 | 1.3:+69057279 | MS.gene49112:CDS |
| CTAGAATTGGAAATGCCAAA+AGG | 0.523851 | 1.3:+69059123 | MS.gene49112:CDS |
| GGGTTTGGATTCATGATGGG+AGG | 0.525505 | 1.3:+69057547 | MS.gene49112:CDS |
| GTTGGGTTTGGATTCATGAT+GGG | 0.528280 | 1.3:+69057544 | MS.gene49112:CDS |
| TTTGTTGGAGAAAGAGGCAT+TGG | 0.529077 | 1.3:+69057450 | MS.gene49112:CDS |
| GTCAGAAATTTCAGAAGTGT+AGG | 0.529712 | 1.3:-69056996 | None:intergenic |
| CAAGAACTGCAGAAAACAAA+GGG | 0.555928 | 1.3:+69058846 | MS.gene49112:CDS |
| AGATAGCAGTGAGTGTGAAG+TGG | 0.556533 | 1.3:+69057618 | MS.gene49112:CDS |
| TATCTTCTAACTCCTTGATG+TGG | 0.556895 | 1.3:-69058289 | None:intergenic |
| AATATCAAGGCTTGCAACTG+AGG | 0.558159 | 1.3:+69057309 | MS.gene49112:CDS |
| GGATTCCTTATCTAAAGTAA+AGG | 0.565460 | 1.3:+69057180 | MS.gene49112:CDS |
| ATCAAGGCTTGCAACTGAGG+TGG | 0.576214 | 1.3:+69057312 | MS.gene49112:CDS |
| TGTTGTTATTGGAAGAGGCA+AGG | 0.585389 | 1.3:+69057284 | MS.gene49112:CDS |
| AGAAGAAGTAGCTAGATGGA+AGG | 0.587122 | 1.3:+69058468 | MS.gene49112:CDS |
| AGAAAACAAACTCCACATCA+AGG | 0.590263 | 1.3:+69058277 | MS.gene49112:CDS |
| CCAAGGCCTCAACAGTGGAA+AGG | 0.591423 | 1.3:+69057825 | MS.gene49112:intron |
| GTAGAGGAGTTGAACTTCGT+CGG | 0.592524 | 1.3:+69058973 | MS.gene49112:CDS |
| TGCAACTGAGGTGGAAACAA+AGG | 0.599427 | 1.3:+69057321 | MS.gene49112:CDS |
| TTTGGCATTTCCAATTCTAG+AGG | 0.603440 | 1.3:-69059120 | None:intergenic |
| TCAGAAATTTCAGAAGTGTA+GGG | 0.604525 | 1.3:-69056995 | None:intergenic |
| GGAACTAACCAGACAACTAG+AGG | 0.607450 | 1.3:+69059004 | MS.gene49112:CDS |
| TGTATTGGATGGAAATGAAG+TGG | 0.608267 | 1.3:+69057078 | MS.gene49112:CDS |
| AGAGTTAAGTGATGAATCGA+TGG | 0.608291 | 1.3:+69057261 | MS.gene49112:CDS |
| GTTTCTCTGTGAGACACTGG+AGG | 0.609222 | 1.3:-69058238 | None:intergenic |
| TTGAAGCTAGCTGATAGTAG+AGG | 0.611299 | 1.3:+69058957 | MS.gene49112:CDS |
| GGTGCTTTGGACATATCCAA+TGG | 0.618935 | 1.3:+69058867 | MS.gene49112:CDS |
| AAGTGAGTCGACGTATATGT+TGG | 0.622198 | 1.3:+69059057 | MS.gene49112:CDS |
| ACAAGAACTGCAGAAAACAA+AGG | 0.632471 | 1.3:+69058845 | MS.gene49112:CDS |
| ATCAACAGATAGTACTTCTG+AGG | 0.634209 | 1.3:+69057585 | MS.gene49112:CDS |
| GGATATCAATAACTTGCTCA+GGG | 0.635640 | 1.3:+69057423 | MS.gene49112:CDS |
| GTCGACGTATATGTTGGCCA+TGG | 0.640311 | 1.3:+69059063 | MS.gene49112:CDS |
| ACTCAAAGAAGAGCTAGCAA+TGG | 0.653656 | 1.3:+69058899 | MS.gene49112:CDS |
| AACTGAGGTGGAAACAAAGG+TGG | 0.664974 | 1.3:+69057324 | MS.gene49112:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTTATTTAATTATACAT+AGG | + | chr1.3:69057718-69057737 | MS.gene49112:intron | 10.0% |
| !! | AGTATATAAAAATAATGCAA+GGG | - | chr1.3:69058630-69058649 | None:intergenic | 15.0% |
| !!! | ATAATTTGTATATAGAACTA+AGG | - | chr1.3:69057673-69057692 | None:intergenic | 15.0% |
| !!! | TAGTTCTATATACAAATTAT+AGG | + | chr1.3:69057673-69057692 | MS.gene49112:intron | 15.0% |
| !! | AAAATAATATCACTATGTGA+TGG | - | chr1.3:69057950-69057969 | None:intergenic | 20.0% |
| !! | GAGTATATAAAAATAATGCA+AGG | - | chr1.3:69058631-69058650 | None:intergenic | 20.0% |
| !!! | ATTTTTTATTGATGTAGCAA+GGG | - | chr1.3:69058569-69058588 | None:intergenic | 20.0% |
| !!! | TATTTTTTATTGATGTAGCA+AGG | - | chr1.3:69058570-69058589 | None:intergenic | 20.0% |
| !!! | TTAGTCTATTCTGAAATTTA+TGG | + | chr1.3:69057795-69057814 | MS.gene49112:intron | 20.0% |
| !!! | TTTTTTTGTCTAACTGTTAA+AGG | + | chr1.3:69058411-69058430 | MS.gene49112:intron | 20.0% |
| ! | AAAACCAAACTAAATGAACT+CGG | - | chr1.3:69058172-69058191 | None:intergenic | 25.0% |
| ! | AACAAAGGTGGAAAATTATA+AGG | + | chr1.3:69057336-69057355 | MS.gene49112:CDS | 25.0% |
| ! | ATAAAAATAATGCAAGGGAA+AGG | - | chr1.3:69058625-69058644 | None:intergenic | 25.0% |
| ! | GTCACATTTATTGATCAAAT+AGG | - | chr1.3:69058345-69058364 | None:intergenic | 25.0% |
| ! | TAATGTTTGAATGTTCCATT+AGG | + | chr1.3:69058809-69058828 | MS.gene49112:intron | 25.0% |
| ! | TGGAAAATTATAAGGAGTTA+AGG | + | chr1.3:69057344-69057363 | MS.gene49112:CDS | 25.0% |
| ! | TTATAAGGAGTTAAGGAAAA+AGG | + | chr1.3:69057351-69057370 | MS.gene49112:CDS | 25.0% |
| ! | TTGAGAAAGAAGAGAAAAAT+GGG | + | chr1.3:69057119-69057138 | MS.gene49112:CDS | 25.0% |
| !! | TTTGAGTCTTAATTTTCCAT+TGG | - | chr1.3:69058886-69058905 | None:intergenic | 25.0% |
| !!! | AAATTTATGGTCATTTTCCA+AGG | + | chr1.3:69057808-69057827 | MS.gene49112:intron | 25.0% |
| AAAAAACTAGTGAGAAAGAG+AGG | - | chr1.3:69058386-69058405 | None:intergenic | 30.0% | |
| AAAGTAAAGGAGAGTTTAGA+GGG | + | chr1.3:69057193-69057212 | MS.gene49112:CDS | 30.0% | |
| AAGCTTAACTGAAGAGAATA+GGG | + | chr1.3:69057402-69057421 | MS.gene49112:CDS | 30.0% | |
| ACTCTCCTTTACTTTAGATA+AGG | - | chr1.3:69057188-69057207 | None:intergenic | 30.0% | |
| AGAAAAATGGGATGATGTTA+AGG | + | chr1.3:69057131-69057150 | MS.gene49112:CDS | 30.0% | |
| CTAGAACTCAATCTAAAAAC+TGG | - | chr1.3:69059089-69059108 | None:intergenic | 30.0% | |
| CTCAAAACAGTTTCAAAGTA+AGG | - | chr1.3:69057046-69057065 | None:intergenic | 30.0% | |
| CTTTATCTGAATGAAGACTA+TGG | - | chr1.3:69057021-69057040 | None:intergenic | 30.0% | |
| GAAAAATGGGATGATGTTAA+GGG | + | chr1.3:69057132-69057151 | MS.gene49112:CDS | 30.0% | |
| GCATAATTCATTCATTTGCA+AGG | + | chr1.3:69057981-69058000 | MS.gene49112:intron | 30.0% | |
| GCATTGGAGAAGAAAATAAA+GGG | + | chr1.3:69057466-69057485 | MS.gene49112:CDS | 30.0% | |
| GTGAGTTCAACATAGTTATA+TGG | - | chr1.3:69057919-69057938 | None:intergenic | 30.0% | |
| GTTGAGAAAGAAGAGAAAAA+TGG | + | chr1.3:69057118-69057137 | MS.gene49112:CDS | 30.0% | |
| GTTTGGATTAACAGTTAGTT+TGG | + | chr1.3:69058658-69058677 | MS.gene49112:intron | 30.0% | |
| TAAAGGGACATGATCATAAA+AGG | + | chr1.3:69057482-69057501 | MS.gene49112:CDS | 30.0% | |
| TAAAGTAAAGGAGAGTTTAG+AGG | + | chr1.3:69057192-69057211 | MS.gene49112:CDS | 30.0% | |
| TAAGCTTAACTGAAGAGAAT+AGG | + | chr1.3:69057401-69057420 | MS.gene49112:CDS | 30.0% | |
| TATAGGCAAAATACATCTTG+CGG | + | chr1.3:69057690-69057709 | MS.gene49112:intron | 30.0% | |
| TGAATCCTTCACTTCAATAA+AGG | + | chr1.3:69057159-69057178 | MS.gene49112:CDS | 30.0% | |
| TGTAACTTCTGCTAAAATCA+CGG | - | chr1.3:69058702-69058721 | None:intergenic | 30.0% | |
| TGTAATCTACTTCTTGCAAA+AGG | + | chr1.3:69057772-69057791 | MS.gene49112:intron | 30.0% | |
| TGTCAGAGAAATAGTTTATG+AGG | + | chr1.3:69057234-69057253 | MS.gene49112:CDS | 30.0% | |
| TTCTCAATTGAGTGATTTCA+AGG | - | chr1.3:69057868-69057887 | None:intergenic | 30.0% | |
| ! | ATTGTTGAGTTTGTACTGAT+TGG | - | chr1.3:69056966-69056985 | None:intergenic | 30.0% |
| ! | GGATTCCTTATCTAAAGTAA+AGG | + | chr1.3:69057180-69057199 | MS.gene49112:CDS | 30.0% |
| ! | TCAGAAATTTCAGAAGTGTA+GGG | - | chr1.3:69056998-69057017 | None:intergenic | 30.0% |
| !! | AATATTGCTACCTCTAGAAT+TGG | + | chr1.3:69059110-69059129 | MS.gene49112:CDS | 30.0% |
| !!! | AACTGTTTTGAGAGAAAAAC+AGG | + | chr1.3:69057054-69057073 | MS.gene49112:CDS | 30.0% |
| !!! | GAGTTCATTTAGTTTGGTTT+TGG | + | chr1.3:69058171-69058190 | MS.gene49112:intron | 30.0% |
| AAGAGGCAAGGTTAATATCA+AGG | + | chr1.3:69057296-69057315 | MS.gene49112:CDS | 35.0% | |
| ACAAGAACTGCAGAAAACAA+AGG | + | chr1.3:69058845-69058864 | MS.gene49112:CDS | 35.0% | |
| ACTGTTAATCCAAACATGCA+CGG | - | chr1.3:69058653-69058672 | None:intergenic | 35.0% | |
| AGAAAACAAACTCCACATCA+AGG | + | chr1.3:69058277-69058296 | MS.gene49112:CDS | 35.0% | |
| AGAAGATAGAGAGAGAATCT+TGG | + | chr1.3:69058304-69058323 | MS.gene49112:CDS | 35.0% | |
| AGAGTTAAGTGATGAATCGA+TGG | + | chr1.3:69057261-69057280 | MS.gene49112:CDS | 35.0% | |
| ATCAACAGATAGTACTTCTG+AGG | + | chr1.3:69057585-69057604 | MS.gene49112:CDS | 35.0% | |
| ATTATTATGAACTTCGTGCC+AGG | + | chr1.3:69058201-69058220 | MS.gene49112:intron | 35.0% | |
| CAAGAACTGCAGAAAACAAA+GGG | + | chr1.3:69058846-69058865 | MS.gene49112:CDS | 35.0% | |
| CACTCAATTGAGAAGATCTT+TGG | + | chr1.3:69057874-69057893 | MS.gene49112:CDS | 35.0% | |
| CATACCGAGTTCATTTAGTT+TGG | + | chr1.3:69058165-69058184 | MS.gene49112:intron | 35.0% | |
| CTAGAATTGGAAATGCCAAA+AGG | + | chr1.3:69059123-69059142 | MS.gene49112:CDS | 35.0% | |
| GAAAAACAGGATGTATTGGA+TGG | + | chr1.3:69057067-69057086 | MS.gene49112:CDS | 35.0% | |
| GAGAGAAAAACAGGATGTAT+TGG | + | chr1.3:69057063-69057082 | MS.gene49112:CDS | 35.0% | |
| GGAATCCTTTATTGAAGTGA+AGG | - | chr1.3:69057167-69057186 | None:intergenic | 35.0% | |
| TAGCAGAAGTTACACTTTGT+AGG | + | chr1.3:69058708-69058727 | MS.gene49112:intron | 35.0% | |
| TATCTTCTAACTCCTTGATG+TGG | - | chr1.3:69058292-69058311 | None:intergenic | 35.0% | |
| TGAAGAAAGGATTGCATTTC+TGG | - | chr1.3:69059155-69059174 | None:intergenic | 35.0% | |
| TGAAGTGGAAGTTGTTAGTT+TGG | + | chr1.3:69057633-69057652 | MS.gene49112:CDS | 35.0% | |
| TGTATTGGATGGAAATGAAG+TGG | + | chr1.3:69057078-69057097 | MS.gene49112:CDS | 35.0% | |
| TGTCTAACTGTTAAAGGTAG+AGG | + | chr1.3:69058417-69058436 | MS.gene49112:intron | 35.0% | |
| TGTGAATTGGAAGTTAAAGC+TGG | + | chr1.3:69058496-69058515 | MS.gene49112:CDS | 35.0% | |
| TGTTTGAATGTTCCATTAGG+TGG | + | chr1.3:69058812-69058831 | MS.gene49112:intron | 35.0% | |
| TTATATACTCCGTGCATGTT+TGG | + | chr1.3:69058641-69058660 | MS.gene49112:intron | 35.0% | |
| TTGTAGGCTCAGGAAAATTA+TGG | + | chr1.3:69058724-69058743 | MS.gene49112:intron | 35.0% | |
| TTTGGCATTTCCAATTCTAG+AGG | - | chr1.3:69059123-69059142 | None:intergenic | 35.0% | |
| ! | AAGCATGAAGCATTTGTGAA+AGG | - | chr1.3:69058048-69058067 | None:intergenic | 35.0% |
| ! | AGCATGAAGCATTTGTGAAA+GGG | - | chr1.3:69058047-69058066 | None:intergenic | 35.0% |
| ! | CTCGGTATGATTTTGAACTA+TGG | - | chr1.3:69058154-69058173 | None:intergenic | 35.0% |
| ! | GAAGATCTTTGGAAGAATCT+AGG | + | chr1.3:69057885-69057904 | MS.gene49112:CDS | 35.0% |
| ! | GGCATTGGAGAAGAAAATAA+AGG | + | chr1.3:69057465-69057484 | MS.gene49112:CDS | 35.0% |
| ! | GTCAGAAATTTCAGAAGTGT+AGG | - | chr1.3:69056999-69057018 | None:intergenic | 35.0% |
| !! | GGATATCAATAACTTGCTCA+GGG | + | chr1.3:69057423-69057442 | MS.gene49112:CDS | 35.0% |
| !! | TGAATCGATGGTGTTGTTAT+TGG | + | chr1.3:69057273-69057292 | MS.gene49112:CDS | 35.0% |
| !!! | CATTTCTGGTATCATCCTTT+TGG | - | chr1.3:69059141-69059160 | None:intergenic | 35.0% |
| AAGTGAGTCGACGTATATGT+TGG | + | chr1.3:69059057-69059076 | MS.gene49112:CDS | 40.0% | |
| AAGTTACACTTTGTAGGCTC+AGG | + | chr1.3:69058714-69058733 | MS.gene49112:intron | 40.0% | |
| AATATCAAGGCTTGCAACTG+AGG | + | chr1.3:69057309-69057328 | MS.gene49112:CDS | 40.0% | |
| ACTCAAAGAAGAGCTAGCAA+TGG | + | chr1.3:69058899-69058918 | MS.gene49112:CDS | 40.0% | |
| AGAAGAAGTAGCTAGATGGA+AGG | + | chr1.3:69058468-69058487 | MS.gene49112:CDS | 40.0% | |
| AGTTGGGTTTGGATTCATGA+TGG | + | chr1.3:69057543-69057562 | MS.gene49112:CDS | 40.0% | |
| ATGGAAGGAAGCTTGTGAAT+TGG | + | chr1.3:69058483-69058502 | MS.gene49112:CDS | 40.0% | |
| CAGAAGAAGAAGTAGCTAGA+TGG | + | chr1.3:69058464-69058483 | MS.gene49112:CDS | 40.0% | |
| CATTATCCTTTCCACTGTTG+AGG | - | chr1.3:69057834-69057853 | None:intergenic | 40.0% | |
| CTCAATCTAAAAACTGGCCA+TGG | - | chr1.3:69059083-69059102 | None:intergenic | 40.0% | |
| GAAAAAGGAGAAGAGAGAGT+TGG | + | chr1.3:69057366-69057385 | MS.gene49112:CDS | 40.0% | |
| GGTTTGGATTGCAGAAAGTT+GGG | + | chr1.3:69057527-69057546 | MS.gene49112:CDS | 40.0% | |
| GTTGGGTTTGGATTCATGAT+GGG | + | chr1.3:69057544-69057563 | MS.gene49112:CDS | 40.0% | |
| TGCAAGGAAGTGAGTGAAAA+AGG | + | chr1.3:69057997-69058016 | MS.gene49112:intron | 40.0% | |
| TGTTAAGATTTGCGATGACG+CGG | - | chr1.3:69058755-69058774 | None:intergenic | 40.0% | |
| TTGAAGCTAGCTGATAGTAG+AGG | + | chr1.3:69058957-69058976 | MS.gene49112:CDS | 40.0% | |
| ! | GATTGAAGAGCGTGACAAAA+TGG | + | chr1.3:69058528-69058547 | MS.gene49112:CDS | 40.0% |
| ! | TCAGAAGTGTAGGGTGAATT+TGG | - | chr1.3:69056989-69057008 | None:intergenic | 40.0% |
| ! | TGTTGTTATTGGAAGAGGCA+AGG | + | chr1.3:69057284-69057303 | MS.gene49112:CDS | 40.0% |
| ! | TTAGTTTGGTTGAGTCACGA+TGG | + | chr1.3:69058672-69058691 | MS.gene49112:intron | 40.0% |
| ! | TTTGTTGGAGAAAGAGGCAT+TGG | + | chr1.3:69057450-69057469 | MS.gene49112:CDS | 40.0% |
| ! | TTTGTTTCTCTGTGAGACAC+TGG | - | chr1.3:69058244-69058263 | None:intergenic | 40.0% |
| !! | AGTTTGTACTGATTGGAGGA+TGG | - | chr1.3:69056959-69056978 | None:intergenic | 40.0% |
| !! | GATGGTGTTGTTATTGGAAG+AGG | + | chr1.3:69057279-69057298 | MS.gene49112:CDS | 40.0% |
| !! | GGGATATCAATAACTTGCTC+AGG | + | chr1.3:69057422-69057441 | MS.gene49112:CDS | 40.0% |
| !! | GTTGAGTTTGTACTGATTGG+AGG | - | chr1.3:69056963-69056982 | None:intergenic | 40.0% |
| AACTGAGGTGGAAACAAAGG+TGG | + | chr1.3:69057324-69057343 | MS.gene49112:CDS | 45.0% | |
| AGATAGCAGTGAGTGTGAAG+TGG | + | chr1.3:69057618-69057637 | MS.gene49112:CDS | 45.0% | |
| CTCTGATTCCTCTAGTTGTC+TGG | - | chr1.3:69059015-69059034 | None:intergenic | 45.0% | |
| CTGATTGGAGGATGGTTGAT+AGG | - | chr1.3:69056951-69056970 | None:intergenic | 45.0% | |
| GGAACTAACCAGACAACTAG+AGG | + | chr1.3:69059004-69059023 | MS.gene49112:CDS | 45.0% | |
| GGAGAGTTTAGAGGGAGATA+AGG | + | chr1.3:69057201-69057220 | MS.gene49112:CDS | 45.0% | |
| GGATTGCAGAAAGTTGGGTT+TGG | + | chr1.3:69057532-69057551 | MS.gene49112:CDS | 45.0% | |
| GGGTTTGGATTGCAGAAAGT+TGG | + | chr1.3:69057526-69057545 | MS.gene49112:CDS | 45.0% | |
| GTAGAGGAGTTGAACTTCGT+CGG | + | chr1.3:69058973-69058992 | MS.gene49112:CDS | 45.0% | |
| GTTTCAAAGCAGCCACCTAA+TGG | - | chr1.3:69058827-69058846 | None:intergenic | 45.0% | |
| TGCAACTGAGGTGGAAACAA+AGG | + | chr1.3:69057321-69057340 | MS.gene49112:CDS | 45.0% | |
| ! | ATTTTCCAAGGCCTCAACAG+TGG | + | chr1.3:69057820-69057839 | MS.gene49112:intron | 45.0% |
| ! | GGTGCTTTGGACATATCCAA+TGG | + | chr1.3:69058867-69058886 | MS.gene49112:CDS | 45.0% |
| ! | GGTTGCTTTGTTGGAGAAAG+AGG | + | chr1.3:69057444-69057463 | MS.gene49112:CDS | 45.0% |
| ! | TTTGGATTCATGATGGGAGG+TGG | + | chr1.3:69057550-69057569 | MS.gene49112:CDS | 45.0% |
| !! | GCAGAAAACAAAGGGTGCTT+TGG | + | chr1.3:69058854-69058873 | MS.gene49112:CDS | 45.0% |
| AACCCAGCAAACTGCAACAG+AGG | - | chr1.3:69057511-69057530 | None:intergenic | 50.0% | |
| AATGGCTGCAATAGCTGCAC+AGG | + | chr1.3:69058917-69058936 | MS.gene49112:CDS | 50.0% | |
| ATCAAGGCTTGCAACTGAGG+TGG | + | chr1.3:69057312-69057331 | MS.gene49112:CDS | 50.0% | |
| ATGCCTCTGTTGCAGTTTGC+TGG | + | chr1.3:69057505-69057524 | MS.gene49112:CDS | 50.0% | |
| GTCGACGTATATGTTGGCCA+TGG | + | chr1.3:69059063-69059082 | MS.gene49112:CDS | 50.0% | |
| GTTTCTCTGTGAGACACTGG+AGG | - | chr1.3:69058241-69058260 | None:intergenic | 50.0% | |
| TAAGATTTGCGATGACGCGG+TGG | - | chr1.3:69058752-69058771 | None:intergenic | 50.0% | |
| TGAACTTCGTCGGCAGATAG+AGG | + | chr1.3:69058983-69059002 | MS.gene49112:CDS | 50.0% | |
| ! | CTTGCTCAGGGTTGCTTTGT+TGG | + | chr1.3:69057435-69057454 | MS.gene49112:CDS | 50.0% |
| ! | GGGTTTGGATTCATGATGGG+AGG | + | chr1.3:69057547-69057566 | MS.gene49112:CDS | 50.0% |
| ! | TGCCTCTGTTGCAGTTTGCT+GGG | + | chr1.3:69057506-69057525 | MS.gene49112:CDS | 50.0% |
| !! | CTGTTGCAGTTTGCTGGGTT+TGG | + | chr1.3:69057511-69057530 | MS.gene49112:CDS | 50.0% |
| CCAAGGCCTCAACAGTGGAA+AGG | + | chr1.3:69057825-69057844 | MS.gene49112:intron | 55.0% | |
| CCTTTCCACTGTTGAGGCCT+TGG | - | chr1.3:69057828-69057847 | None:intergenic | 55.0% | |
| ! | GAGGCGCTCTGTGTCTGACC+TGG | - | chr1.3:69058222-69058241 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 69056938 | 69059178 | 69056938 | ID=MS.gene49112 |
| chr1.3 | mRNA | 69056938 | 69059178 | 69056938 | ID=MS.gene49112.t1;Parent=MS.gene49112 |
| chr1.3 | exon | 69056938 | 69057654 | 69056938 | ID=MS.gene49112.t1.exon1;Parent=MS.gene49112.t1 |
| chr1.3 | CDS | 69056938 | 69057654 | 69056938 | ID=cds.MS.gene49112.t1;Parent=MS.gene49112.t1 |
| chr1.3 | exon | 69057830 | 69057906 | 69057830 | ID=MS.gene49112.t1.exon2;Parent=MS.gene49112.t1 |
| chr1.3 | CDS | 69057830 | 69057906 | 69057830 | ID=cds.MS.gene49112.t1;Parent=MS.gene49112.t1 |
| chr1.3 | exon | 69058223 | 69058334 | 69058223 | ID=MS.gene49112.t1.exon3;Parent=MS.gene49112.t1 |
| chr1.3 | CDS | 69058223 | 69058334 | 69058223 | ID=cds.MS.gene49112.t1;Parent=MS.gene49112.t1 |
| chr1.3 | exon | 69058433 | 69058549 | 69058433 | ID=MS.gene49112.t1.exon4;Parent=MS.gene49112.t1 |
| chr1.3 | CDS | 69058433 | 69058549 | 69058433 | ID=cds.MS.gene49112.t1;Parent=MS.gene49112.t1 |
| chr1.3 | exon | 69058831 | 69059178 | 69058831 | ID=MS.gene49112.t1.exon5;Parent=MS.gene49112.t1 |
| chr1.3 | CDS | 69058831 | 69059178 | 69058831 | ID=cds.MS.gene49112.t1;Parent=MS.gene49112.t1 |
| Gene Sequence |
| Protein sequence |
