AlfalfaGEDB | MS.gene49143

M. sativa cultivar XinJiangDaYe / MS.gene49143

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49143.t1	XP_024642329.1	97.9	768	16	0	1	768	65	832	0.00E+00	1518.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49143.t1	Q9FLW0	65.0	779	257	8	1	768	51	824	4.9e-294	1011.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49143.t1	A0A396K0P9	97.9	768	16	0	1	768	65	832	0.0e+00	1518.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene061137	MS.gene49143	0.870983	9.66E-67	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene49143	MS.gene003308	PPI
MS.gene49143	MS.gene03063	PPI
MS.gene49143	MS.gene74536	PPI
MS.gene49143	MS.gene02105	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene49143.t1	MTR_1g100110	95.833	768	17	1	1	768	62	814	1519
MS.gene49143.t1	MTR_6g048090	74.799	746	170	7	3	732	50	793	1142
MS.gene49143.t1	MTR_4g061833	48.925	791	362	13	10	768	60	840	725
MS.gene49143.t1	MTR_4g061930	48.925	791	362	13	10	768	60	840	725
MS.gene49143.t1	MTR_2g080220	48.771	773	350	14	32	768	81	843	697
MS.gene49143.t1	MTR_2g096160	48.765	769	356	11	32	768	85	847	697
MS.gene49143.t1	MTR_4g061833	50.501	699	309	11	97	768	1	689	666
MS.gene49143.t1	MTR_8g037700	48.587	743	336	19	5	719	85	809	656
MS.gene49143.t1	MTR_4g109010	43.719	796	373	19	33	768	105	885	593
MS.gene49143.t1	MTR_2g030310	42.838	733	365	16	30	719	79	800	564

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene49143.t1	AT5G24010	64.955	779	257	8	1	768	51	824	1027
MS.gene49143.t1	AT3G46290	48.771	773	342	15	32	768	76	830	705
MS.gene49143.t1	AT2G21480	47.453	805	361	17	10	768	83	871	692
MS.gene49143.t1	AT5G59700	47.955	807	343	18	8	768	54	829	692
MS.gene49143.t1	AT4G39110	48.223	788	342	17	32	768	106	878	681
MS.gene49143.t1	AT5G54380	47.389	785	356	16	32	768	80	855	677
MS.gene49143.t1	AT5G61350	48.298	764	338	18	13	731	70	821	646
MS.gene49143.t1	AT2G23200	45.432	799	367	24	13	768	62	834	597
MS.gene49143.t1	AT2G39360	41.473	774	414	16	17	768	59	815	577
MS.gene49143.t1	AT1G30570	41.615	805	393	21	16	765	66	848	572

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Find 163 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAATAATCCTCATC+AGG	0.453567	1.3:+68792302	None:intergenic
AAAACTCAAGTTTAGCTTCA+AGG	0.377207	1.3:-68792163	MS.gene49143:CDS
AAAATCAAAAGAAAGTTCAG+TGG	0.626235	1.3:-68791694	MS.gene49143:CDS
AAAGTTTGTATATTTGGAGA+TGG	0.454180	1.3:+68792785	None:intergenic
AAATCAGATGTGTATTCATT+TGG	0.292532	1.3:-68790997	MS.gene49143:CDS
AAATCTTTCATCTCAGGTTT+TGG	0.259282	1.3:-68792399	MS.gene49143:CDS
AAATTTAGTGTCTTGGTTAA+TGG	0.186012	1.3:-68792635	MS.gene49143:CDS
AACAGGTGAATTTAGCAGAA+TGG	0.495033	1.3:-68790915	MS.gene49143:CDS
AAGCATTTATGGGAGTTGAT+AGG	0.415499	1.3:-68791792	MS.gene49143:CDS
AAGTTTGTATATTTGGAGAT+GGG	0.469654	1.3:+68792786	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCAAATAATCCTCATC+AGG	+	chr1.3:68791131-68791150	None:intergenic	30.0%
ACTGTTCATAGGATTAATGT+AGG	-	chr1.3:68791056-68791075	MS.gene49143:CDS	30.0%
AGAAATTTGATTATAGGCTC+TGG	-	chr1.3:68791893-68791912	MS.gene49143:CDS	30.0%
ATCAGATGTGTATTCATTTG+GGG	-	chr1.3:68792435-68792454	MS.gene49143:CDS	30.0%
ATCTGCAAAATTTAGTGTCT+TGG	-	chr1.3:68790788-68790807	MS.gene49143:CDS	30.0%
ATCTTCATCGATCAATATGT+TGG	+	chr1.3:68792278-68792297	None:intergenic	30.0%
ATGATACTAATATTGTGCAC+GGG	-	chr1.3:68791612-68791631	MS.gene49143:CDS	30.0%
ATGGTGTTTCACATTTGATT+CGG	-	chr1.3:68791324-68791343	MS.gene49143:CDS	30.0%
ATTGATCGATGAAGATAATG+TGG	-	chr1.3:68792282-68792301	MS.gene49143:CDS	30.0%
CAATGGTTACATTGCATATA+AGG	-	chr1.3:68791406-68791425	MS.gene49143:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	68790573	68792879	68790573	ID=MS.gene49143
chr1.3	mRNA	68790573	68792879	68790573	ID=MS.gene49143.t1;Parent=MS.gene49143
chr1.3	exon	68790573	68792879	68790573	ID=MS.gene49143.t1.exon1;Parent=MS.gene49143.t1
chr1.3	CDS	68790573	68792879	68790573	ID=cds.MS.gene49143.t1;Parent=MS.gene49143.t1

Gene Sequence

>MS.gene49143

ATGAGTGATTCAACCAAACCAGGCTCAAATTTTCTCTCTTCTGATGATTCCATTTCTCTCACAAACAAAAACCCATCTCCAAATATACAAACTTTGTATCACACAGCCAGAGTTTTCATTACCACTGGGAGATACAAGTTCAACATGAAGAAAAATGGTACCCATTTGATTCGTTTTCATTTCTTTCCATTTAAAGATCAAAGTTTTGACTTGAAATCTGCAAAATTTAGTGTCTTGGTTAATGGAATTTCAATTCTAAGTCAATTTAAGCCACCTAATGATGTGATGATTAAAGAGTTTATTTTGAAGATTGAATCAAATTTGCTTGAAATTTTGTTTAGACCCTTTAAATCAGGTTTTGGATATGTAAATGCTGTGGAAGTGTTTACTGCTCCTGAAGATTTTGTTATAGATTATGGAACAAGGTTGGTTGGTCCTTCTGGTGTGGAAGAGTATAGAAATCTTTCATCTCAGGTTTTGGAAACTGTTCATAGGATTAATGTAGGAGGTATGAAAATAACTCCTTTTAATGACACCCTTTGGAGGACTTGGATTCCTGATGAGGATTATTTGGTTTTTAAGGAAGCAGCTAAACATGCAGTAAGCACTCATACACCTGATTACCAGAAGGGAGGTGCTACTCCAGAGATTGCACCTGAAAATGTTTACATGACTGCTCAACAGATGAATAGGGAAAACTCAAGTTTAGCTTCAAGGTTTAACATAACGTGGAATTTTCCTGTGGCTCGTGATGGTGTTTCACATTTGATTCGGTTGCATTTCTGTGATATTGTTAGTACTTCTCTCAATTTGCTTTACTTTGATGTGTATATCAATGGTTACATTGCATATAAGGATCTTGATTTGTCAGCACTTACATTCCACACTCTTGCATCACCGGTCTATGTGGATTTTGTTGCTAATTCAGACGATTCAAGTGTTATTCAAATAAGTGTTGGTCCTTCTGACCTGAGTAGTTCTATTAGGATTAATGCCATACTGAATGGTGCAGAGATAATGAAGATGGTCAACGATGTCGATGATACTAATATTGTGCACGGGAGGAAGCATTTATGGGAGTTGATAGGTTCAATTGTTGGAGGAATCGTCATCGCAATTTTTGTTGTGACTATTTTTCTACTTGCTACCAGATGCAGGAAGAAAAAATCAAAAGAAAGTTCAGTGGAAAGTGTTGGATGGACGCCTTTGCGTATGTTTGGAGGGAGTTCCCTTAGTAGAACATCTGAACACGGTTCTTATGGATATCTTGGAATGAAGATCCCTTTTGCTGAAATACAATCAGCAACAAACAATTTTGATAGAAATTTGATTATAGGCTCTGGTGGATTTGGTATGGTCTACAAAGGAGTACTCAGAGACAATGTAAAAGTTGCTGTCAAGAGAGGTATGCCAGGTTCAAGACAAGGCCTTCCAGAATTCCACACTGAAATAACCATTTTATCAAAAATTCGCCATCGACATCTTGTTTCACTGGTTGGTTTCTGTGAAGAAAATTCAGAAATGATACTTGTTTATGAGTATGTAGAAAAGGGTCCATTGAAAAAGCATTTATATGGTTCGTCGCGACAATCCCCTCTCTCTTGGAAGCAGCGGCTTGAGATATGCATTGGTTCAGCTAGAGGTCTGCACTATCTTCACACCGGTTTTGCTCAAGGAATCATCCACCGCGACATTAAATCGACCAACATATTGATCGATGAAGATAATGTGGCCAAGGTTGCTGATTTCGGTCTATCGAGATCAGGTCCGAGCCTCGATGAAACACATGTGAGTACCGGTGTGAAAGGTAGTTTTGGTTATCTTGATCCCGAGTATTACAGAAGGCAACAGCTTACGGATAAATCAGATGTGTATTCATTTGGGGTTGTGCTTTTTGAGGTTCTTTGTGGCAGACCTGCTGTTGATCCACAACTGACTAGGGAACAGGTGAATTTAGCAGAATGGGCAATTGAGTGGCTGCAGAAGGGAATGCTGGATCATATTGTTGACCCTCATCTTGTTGGAGATATTAAACCAAGGTCATTGAAGAAATTTGGTGAGACAGCGGAGAAATGTTTGGCTGAATATGGTGTTGATAGACCAACCATGGGTGATGTCTTGTGGAATTTGGAATATGCACTTCAGCTCCAAGAAAGTAATAGCAGTGCTAGTGAAGCAGTTAATGAAACAACAACAATTGTTCCTGAAAATTCTACCAGTAGAATAGAGAGAAATTATGATAATGATTATTCAGACATAAGTACCAGCCGAGTGTTTTCGCAGCTAATGAATAATGATGGCAGATGA

Protein sequence

>MS.gene49143.t1

MSDSTKPGSNFLSSDDSISLTNKNPSPNIQTLYHTARVFITTGRYKFNMKKNGTHLIRFHFFPFKDQSFDLKSAKFSVLVNGISILSQFKPPNDVMIKEFILKIESNLLEILFRPFKSGFGYVNAVEVFTAPEDFVIDYGTRLVGPSGVEEYRNLSSQVLETVHRINVGGMKITPFNDTLWRTWIPDEDYLVFKEAAKHAVSTHTPDYQKGGATPEIAPENVYMTAQQMNRENSSLASRFNITWNFPVARDGVSHLIRLHFCDIVSTSLNLLYFDVYINGYIAYKDLDLSALTFHTLASPVYVDFVANSDDSSVIQISVGPSDLSSSIRINAILNGAEIMKMVNDVDDTNIVHGRKHLWELIGSIVGGIVIAIFVVTIFLLATRCRKKKSKESSVESVGWTPLRMFGGSSLSRTSEHGSYGYLGMKIPFAEIQSATNNFDRNLIIGSGGFGMVYKGVLRDNVKVAVKRGMPGSRQGLPEFHTEITILSKIRHRHLVSLVGFCEENSEMILVYEYVEKGPLKKHLYGSSRQSPLSWKQRLEICIGSARGLHYLHTGFAQGIIHRDIKSTNILIDEDNVAKVADFGLSRSGPSLDETHVSTGVKGSFGYLDPEYYRRQQLTDKSDVYSFGVVLFEVLCGRPAVDPQLTREQVNLAEWAIEWLQKGMLDHIVDPHLVGDIKPRSLKKFGETAEKCLAEYGVDRPTMGDVLWNLEYALQLQESNSSASEAVNETTTIVPENSTSRIERNYDNDYSDISTSRVFSQLMNNDGR