Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49362.t1 | XP_003590553.1 | 95.2 | 723 | 33 | 2 | 1 | 722 | 1 | 722 | 0.00E+00 | 1316.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49362.t1 | Q9LF24 | 27.2 | 213 | 94 | 8 | 548 | 706 | 708 | 913 | 3.8e-06 | 55.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49362.t1 | G7ICP6 | 95.2 | 723 | 33 | 2 | 1 | 722 | 1 | 722 | 0.0e+00 | 1316.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049243 | MS.gene49362 | 0.816207 | 6.23E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49362.t1 | MTR_1g071070 | 96.006 | 726 | 21 | 3 | 1 | 722 | 1 | 722 | 0.0 | 1424 |
| MS.gene49362.t1 | MTR_7g095890 | 49.662 | 739 | 255 | 30 | 12 | 722 | 4 | 653 | 4.98e-179 | 526 |
| MS.gene49362.t1 | MTR_7g015120 | 29.104 | 268 | 136 | 13 | 492 | 713 | 649 | 908 | 1.15e-13 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49362.t1 | AT3G63430 | 37.002 | 627 | 221 | 22 | 103 | 722 | 49 | 508 | 2.77e-101 | 320 |
| MS.gene49362.t1 | AT3G63430 | 35.021 | 711 | 279 | 27 | 21 | 722 | 4 | 540 | 1.15e-98 | 315 |
| MS.gene49362.t1 | AT5G15580 | 28.223 | 287 | 113 | 12 | 501 | 706 | 639 | 913 | 2.10e-14 | 77.8 |
Find 192 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAATAATGTTAATTCTTA+TGG | 0.170803 | 1.1:-53449849 | MS.gene49362:CDS |
| TAACCGTTGGACTTCAATTT+TGG | 0.196054 | 1.1:+53449957 | None:intergenic |
| TTAGAGGCTCTGCAGCTTAA+AGG | 0.226674 | 1.1:-53449606 | MS.gene49362:CDS |
| AGGAAGAGGGAAGCAGAATA+AGG | 0.226928 | 1.1:-53449784 | MS.gene49362:CDS |
| CAGTGTTATTGTTAGATTAA+TGG | 0.236552 | 1.1:-53450066 | MS.gene49362:CDS |
| TCTTATGGTAACATTGATAA+TGG | 0.256110 | 1.1:-53449834 | MS.gene49362:CDS |
| TCAATGCATCGTTTGGTAAT+TGG | 0.266872 | 1.1:+53448721 | None:intergenic |
| CTCCTCCGCGCCTCGACGTT+CGG | 0.271027 | 1.1:+53449357 | None:intergenic |
| TGAGATCTTCTTCTCCTTCT+CGG | 0.271871 | 1.1:-53449530 | MS.gene49362:CDS |
| TGTGATGTAGAAGTATAAAT+TGG | 0.285153 | 1.1:-53448893 | MS.gene49362:intron |
| AGTGTTATTGTTAGATTAAT+GGG | 0.292224 | 1.1:-53450065 | MS.gene49362:CDS |
| CTCGTATTCAAGGATTTAAT+TGG | 0.294796 | 1.1:-53447896 | MS.gene49362:CDS |
| TTTCTTCTTGAACTTATCTT+TGG | 0.296526 | 1.1:+53449285 | None:intergenic |
| GTAACATTGATAATGGATTA+TGG | 0.301713 | 1.1:-53449827 | MS.gene49362:CDS |
| ATCCGAGGAGGAGGCAAAAT+TGG | 0.302398 | 1.1:-53448314 | MS.gene49362:CDS |
| CCTTCCTGTTCTGGAACTTA+AGG | 0.317482 | 1.1:-53450249 | MS.gene49362:CDS |
| AAGCACAATGATTCGATCTA+TGG | 0.334299 | 1.1:-53449702 | MS.gene49362:CDS |
| GAATCATTGTGCTTTGGTTC+AGG | 0.335322 | 1.1:+53449711 | None:intergenic |
| ATCAGATTTGGTCAGAGTTT+CGG | 0.339373 | 1.1:-53448063 | MS.gene49362:CDS |
| GACTCATTACCATCGGATTC+CGG | 0.344614 | 1.1:-53450038 | MS.gene49362:CDS |
| TGCGTTTGCCAGAAAGAAAA+TGG | 0.347612 | 1.1:+53450490 | None:intergenic |
| ACCGTGGAAGGCGGTGTCTA+AGG | 0.350723 | 1.1:-53448098 | MS.gene49362:CDS |
| AGATGAGTGGTTGGGGTGAA+TGG | 0.352171 | 1.1:-53447958 | MS.gene49362:CDS |
| CTCTGTGTCGGTAAGTGAAT+TGG | 0.356274 | 1.1:+53449137 | None:intergenic |
| GATGATTATGATTATTCATC+TGG | 0.360249 | 1.1:+53449907 | None:intergenic |
| CACACTCAAGCATATCTTAG+AGG | 0.366231 | 1.1:-53449622 | MS.gene49362:CDS |
| CTTATCTTTGGCGAATTAAC+CGG | 0.366934 | 1.1:+53449297 | None:intergenic |
| TCTGAATCAGAGGATTTGTT+TGG | 0.368561 | 1.1:-53448019 | MS.gene49362:CDS |
| GCATTTGTTCGGATCTCTCT+AGG | 0.372895 | 1.1:+53450134 | None:intergenic |
| AAGATCTCAGTGGTTTCATT+AGG | 0.374295 | 1.1:+53449544 | None:intergenic |
| CATTAGCAGTTGCATTTGTT+CGG | 0.378994 | 1.1:+53450123 | None:intergenic |
| TCCTCCGCGCCTCGACGTTC+GGG | 0.379144 | 1.1:+53449358 | None:intergenic |
| AGGAAAATGTCACAATCTTC+AGG | 0.380114 | 1.1:+53448238 | None:intergenic |
| AGAGGTGTGGAAGGAGGAAG+AGG | 0.380578 | 1.1:-53449798 | MS.gene49362:CDS |
| TGAGCTCGATCATCAAATCT+TGG | 0.387356 | 1.1:+53449420 | None:intergenic |
| AAAACAAGTCCTTCCTGTTC+TGG | 0.392571 | 1.1:-53450258 | MS.gene49362:CDS |
| CTCCTCCGCATTCTTCTGTT+CGG | 0.411229 | 1.1:-53449473 | MS.gene49362:CDS |
| GGGTGAATGGACGGTGGAGA+TGG | 0.415119 | 1.1:-53447945 | MS.gene49362:CDS |
| ATTGTAATCAATGCATCGTT+TGG | 0.416134 | 1.1:+53448714 | None:intergenic |
| TCATTAGGACAATGGGAGAT+TGG | 0.416704 | 1.1:+53449559 | None:intergenic |
| TTCAAAACACAAGCTTTCTT+CGG | 0.418538 | 1.1:+53447816 | None:intergenic |
| GAGAGGAGACACATCAGATT+TGG | 0.420115 | 1.1:-53448075 | MS.gene49362:CDS |
| AAACAGATGGGGTGCATGGC+TGG | 0.422548 | 1.1:-53450537 | MS.gene49362:CDS |
| CGACGTTCGGGACATTCCTC+CGG | 0.426000 | 1.1:+53449370 | None:intergenic |
| TTCTCTGATTTCTCCGGAGA+AGG | 0.428779 | 1.1:+53450341 | None:intergenic |
| TTCGAGCGGTTTAATAGAAC+CGG | 0.430201 | 1.1:-53449507 | MS.gene49362:CDS |
| TCTAGGGTGAAGCCCTCCTT+TGG | 0.433294 | 1.1:+53450151 | None:intergenic |
| ATTGTTGCTTCTCAAGTAGA+AGG | 0.435159 | 1.1:+53448218 | None:intergenic |
| TCATCTTTCTCTGATTTCTC+CGG | 0.442174 | 1.1:+53450335 | None:intergenic |
| CGTTGCAGGAAATTCTTAAC+CGG | 0.442389 | 1.1:-53448135 | MS.gene49362:CDS |
| GGCAGAGGAGATGAGTGGTT+GGG | 0.443076 | 1.1:-53447966 | MS.gene49362:CDS |
| GGAGATGGGAGATGTCGTTT+TGG | 0.449346 | 1.1:-53447930 | MS.gene49362:CDS |
| AGGAAGGTACAAGGTCTTCA+TGG | 0.452464 | 1.1:-53450229 | MS.gene49362:CDS |
| TAGATCGAATCATTGTGCTT+TGG | 0.455948 | 1.1:+53449705 | None:intergenic |
| GAGAAAAGTGATTGATCCTA+AGG | 0.458864 | 1.1:-53449223 | MS.gene49362:CDS |
| AGTGGTTTCATTAGGACAAT+GGG | 0.462877 | 1.1:+53449552 | None:intergenic |
| CCTTCCTTAAGTTCCAGAAC+AGG | 0.464066 | 1.1:+53450245 | None:intergenic |
| GGAAGAGGGAAGCAGAATAA+GGG | 0.466407 | 1.1:-53449783 | MS.gene49362:CDS |
| CGAACGTCGAGGCGCGGAGG+AGG | 0.467855 | 1.1:-53449356 | MS.gene49362:CDS |
| GAGCTCGATCATCAAATCTT+GGG | 0.471607 | 1.1:+53449421 | None:intergenic |
| GACGTTCGGGACATTCCTCC+GGG | 0.473521 | 1.1:+53449371 | None:intergenic |
| AATTGGAGGAGTACAAAGAA+GGG | 0.474862 | 1.1:-53448876 | MS.gene49362:CDS |
| GACGAGTCAAGAACCGATAC+CGG | 0.481313 | 1.1:+53448775 | None:intergenic |
| GGTGAATGGACGGTGGAGAT+GGG | 0.481425 | 1.1:-53447944 | MS.gene49362:CDS |
| TGGTGTGTTGAAGAAGGATA+TGG | 0.481990 | 1.1:-53447987 | MS.gene49362:CDS |
| CCGTGGAAGGCGGTGTCTAA+GGG | 0.482299 | 1.1:-53448097 | MS.gene49362:CDS |
| CAACGGAGCAATGTCGGCTC+GGG | 0.488675 | 1.1:-53449930 | MS.gene49362:CDS |
| CCCTTAGACACCGCCTTCCA+CGG | 0.493681 | 1.1:+53448097 | None:intergenic |
| AAGTCGATCTCTCGAGACTC+TGG | 0.494700 | 1.1:+53449986 | None:intergenic |
| GTTCCGACGAGCACGAGGAC+TGG | 0.496097 | 1.1:+53449449 | None:intergenic |
| GATATGTGGAGTGCAGGAGA+AGG | 0.501417 | 1.1:-53448340 | MS.gene49362:CDS |
| CGAACAGAAGAATGCGGAGG+AGG | 0.504857 | 1.1:+53449474 | None:intergenic |
| AGAGAAAGATGATGGCAAAC+CGG | 0.507452 | 1.1:-53450324 | MS.gene49362:CDS |
| AGAAGGAAAATCCGAGGAGG+AGG | 0.508110 | 1.1:-53448323 | MS.gene49362:CDS |
| TGCCAGAAAGAAAATGGTTA+CGG | 0.509581 | 1.1:+53450496 | None:intergenic |
| TCAACGGAGCAATGTCGGCT+CGG | 0.510393 | 1.1:-53449931 | MS.gene49362:CDS |
| CATCGAACGACTCGTATTCA+AGG | 0.510869 | 1.1:-53447906 | MS.gene49362:CDS |
| GAAGATGATATGTGGAGTGC+AGG | 0.512219 | 1.1:-53448346 | MS.gene49362:CDS |
| TGAGAAGCAACAATTTCGTA+AGG | 0.515455 | 1.1:-53448209 | MS.gene49362:CDS |
| TCGGAGGATAAGAGAGAGGG+AGG | 0.516634 | 1.1:-53448044 | MS.gene49362:CDS |
| GCCTCTAGTTTGTTACATTG+AGG | 0.516765 | 1.1:+53447842 | None:intergenic |
| CATTTGTTCGGATCTCTCTA+GGG | 0.518783 | 1.1:+53450135 | None:intergenic |
| GAGTGGTTGGGGTGAATGGA+CGG | 0.519523 | 1.1:-53447954 | MS.gene49362:CDS |
| AATTCTCAAGAGAGGCTCCT+AGG | 0.521742 | 1.1:-53450205 | MS.gene49362:CDS |
| GATCCTAAGGTGAAAATGTT+GGG | 0.522669 | 1.1:-53449210 | MS.gene49362:CDS |
| AAATTGGAGGAGTACAAAGA+AGG | 0.523276 | 1.1:-53448877 | MS.gene49362:CDS |
| GCGGAGGAGGGTTAGTAATG+AGG | 0.525806 | 1.1:-53449343 | MS.gene49362:CDS |
| CTTCTCCTTCTCGGTTCGAG+CGG | 0.526908 | 1.1:-53449521 | MS.gene49362:CDS |
| GATTTGTTTGGAGTGATATG+TGG | 0.528271 | 1.1:-53448007 | MS.gene49362:CDS |
| CAGTGGTTTCATTAGGACAA+TGG | 0.528722 | 1.1:+53449551 | None:intergenic |
| CGGAGGAGGAGAATCATAAC+CGG | 0.529851 | 1.1:+53449488 | None:intergenic |
| ACGGTGGTAACCTTTGATTC+CGG | 0.533627 | 1.1:+53448116 | None:intergenic |
| TTGATCTCTTTAACCGGTGA+CGG | 0.536844 | 1.1:+53450290 | None:intergenic |
| TGGCAGAGGAGATGAGTGGT+TGG | 0.536868 | 1.1:-53447967 | MS.gene49362:CDS |
| GAGAAATCAGAGAAAGATGA+TGG | 0.540245 | 1.1:-53450332 | MS.gene49362:CDS |
| AGAAAAGGTTGAAGATGCGT+GGG | 0.541387 | 1.1:-53449671 | MS.gene49362:CDS |
| AAAACATATTCACAAACAGA+TGG | 0.541883 | 1.1:-53450550 | MS.gene49362:CDS |
| AAACATATTCACAAACAGAT+GGG | 0.541977 | 1.1:-53450549 | MS.gene49362:CDS |
| GTTACAACCTAGTCCGGTAT+CGG | 0.542307 | 1.1:-53448788 | MS.gene49362:CDS |
| AGAAGCAACAATTTCGTAAG+GGG | 0.542314 | 1.1:-53448207 | MS.gene49362:CDS |
| GGCGTTGTCATCACCGTCAC+CGG | 0.544136 | 1.1:-53450303 | MS.gene49362:CDS |
| GAGGTGTGGAAGGAGGAAGA+GGG | 0.546629 | 1.1:-53449797 | MS.gene49362:CDS |
| TCAAGAACCGATACCGGACT+AGG | 0.547333 | 1.1:+53448781 | None:intergenic |
| GCAACTGCTCAGATAGCGAC+AGG | 0.550497 | 1.1:-53449261 | MS.gene49362:CDS |
| AATGGTAGAGGTGTGGAAGG+AGG | 0.550698 | 1.1:-53449804 | MS.gene49362:CDS |
| TAGCGACAGGAGGATCTCCT+AGG | 0.552987 | 1.1:-53449248 | MS.gene49362:CDS |
| GCAGAGGAGATGAGTGGTTG+GGG | 0.553665 | 1.1:-53447965 | MS.gene49362:CDS |
| TACACTCAACGGAGCAATGT+CGG | 0.553892 | 1.1:-53449936 | MS.gene49362:CDS |
| GAGAAAAGGTTGAAGATGCG+TGG | 0.554159 | 1.1:-53449672 | MS.gene49362:CDS |
| TGATTCTAGAAGAGTGTCTC+CGG | 0.554213 | 1.1:-53449316 | MS.gene49362:CDS |
| TGTCGAGATCTTGAGAAGGT+TGG | 0.554441 | 1.1:+53449643 | None:intergenic |
| TCACAAACAGATGGGGTGCA+TGG | 0.555175 | 1.1:-53450541 | MS.gene49362:CDS |
| AAACGAGTTACAACCTAGTC+CGG | 0.557491 | 1.1:-53448794 | MS.gene49362:CDS |
| GATATGTGGTGTGTTGAAGA+AGG | 0.557747 | 1.1:-53447993 | MS.gene49362:CDS |
| CGGAATCAGAAGATGATATG+TGG | 0.558896 | 1.1:-53448354 | MS.gene49362:CDS |
| CAACACTAAAAGATTACCTC+CGG | 0.560984 | 1.1:-53450460 | MS.gene49362:intron |
| GAACGTCGAGGCGCGGAGGA+GGG | 0.561377 | 1.1:-53449355 | MS.gene49362:CDS |
| AAGCTTCGACGCTGCAGAGG+CGG | 0.561968 | 1.1:-53448171 | MS.gene49362:CDS |
| CGAGGAGGAGGCAAAATTGG+AGG | 0.562051 | 1.1:-53448311 | MS.gene49362:CDS |
| ATTGATAATGGATTATGGAA+TGG | 0.563730 | 1.1:-53449822 | MS.gene49362:CDS |
| TCTATGGAGAGATTGAGAAA+AGG | 0.563984 | 1.1:-53449686 | MS.gene49362:CDS |
| GCAGAATAAGGGAACAATGA+TGG | 0.564406 | 1.1:-53449772 | MS.gene49362:CDS |
| TCAAAGGTTACCACCGTGGA+AGG | 0.565345 | 1.1:-53448110 | MS.gene49362:CDS |
| TGGAATGGTAGAGGTGTGGA+AGG | 0.568683 | 1.1:-53449807 | MS.gene49362:CDS |
| GAAGGCGGTGTCTAAGGGAG+AGG | 0.569525 | 1.1:-53448092 | MS.gene49362:CDS |
| AAATTCTTAACCGGAATCAA+AGG | 0.570524 | 1.1:-53448126 | MS.gene49362:CDS |
| GTTGAAGAAGGATATGGCAG+AGG | 0.570762 | 1.1:-53447981 | MS.gene49362:CDS |
| GGTCCAGTCCTCGTGCTCGT+CGG | 0.572382 | 1.1:-53449452 | MS.gene49362:CDS |
| CGGAGGAGGGTTAGTAATGA+GGG | 0.573458 | 1.1:-53449342 | MS.gene49362:CDS |
| TGATCCTAAGGTGAAAATGT+TGG | 0.573766 | 1.1:-53449211 | MS.gene49362:CDS |
| TGTGTCGGTAAGTGAATTGG+AGG | 0.575594 | 1.1:+53449140 | None:intergenic |
| GATGTAGAAGTATAAATTGG+AGG | 0.575910 | 1.1:-53448890 | MS.gene49362:intron |
| GGGTCTTGACTCATTACCAT+CGG | 0.577743 | 1.1:-53450045 | MS.gene49362:CDS |
| AGCTTTGCGCCGGAATCCGA+TGG | 0.579218 | 1.1:+53450029 | None:intergenic |
| GAGGGAGGAATCTGAATCAG+AGG | 0.580288 | 1.1:-53448029 | MS.gene49362:CDS |
| TTAAACCGCTCGAACCGAGA+AGG | 0.580662 | 1.1:+53449516 | None:intergenic |
| CAAAAGCTTCGACGCTGCAG+AGG | 0.581028 | 1.1:-53448174 | MS.gene49362:CDS |
| GAGAAGCAACAATTTCGTAA+GGG | 0.581516 | 1.1:-53448208 | MS.gene49362:CDS |
| TGGAGGAGTACAAAGAAGGG+AGG | 0.584753 | 1.1:-53448873 | MS.gene49362:CDS |
| TGGGTGTAGCAGAGGATGAA+TGG | 0.587182 | 1.1:-53449191 | MS.gene49362:CDS |
| GCAACAATTTCGTAAGGGGA+AGG | 0.588925 | 1.1:-53448203 | MS.gene49362:CDS |
| CCTGTTCTGGAACTTAAGGA+AGG | 0.590426 | 1.1:-53450245 | MS.gene49362:CDS |
| AGAGCAGTTGTTGATGCCAA+AGG | 0.590682 | 1.1:-53450167 | MS.gene49362:CDS |
| CTCAAGTTCCGACGAGCACG+AGG | 0.592627 | 1.1:+53449444 | None:intergenic |
| AGATTTGGTCAGAGTTTCGG+AGG | 0.592725 | 1.1:-53448060 | MS.gene49362:CDS |
| GAGCCAAAATTGAAGTCCAA+CGG | 0.595174 | 1.1:-53449960 | MS.gene49362:CDS |
| TGCATTGATTACAATTACAA+AGG | 0.595599 | 1.1:-53448706 | MS.gene49362:intron |
| TAACACTGCAGATCAATCTA+CGG | 0.598839 | 1.1:-53448374 | MS.gene49362:intron |
| GAAGCTATTCTCTGAAACTG+TGG | 0.600223 | 1.1:+53449167 | None:intergenic |
| GCAGTTGTTGATGCCAAAGG+AGG | 0.602701 | 1.1:-53450164 | MS.gene49362:CDS |
| CTGCTATCTAAAGAAAGCCT+AGG | 0.603053 | 1.1:+53450188 | None:intergenic |
| AGATCTCTGAAGCTTTGCGC+CGG | 0.603285 | 1.1:+53450019 | None:intergenic |
| TGGTTGGGGTGAATGGACGG+TGG | 0.603867 | 1.1:-53447951 | MS.gene49362:CDS |
| TGCAGGAGAAGGAAAATCCG+AGG | 0.604176 | 1.1:-53448329 | MS.gene49362:CDS |
| CAGTTGTTGATGCCAAAGGA+GGG | 0.608108 | 1.1:-53450163 | MS.gene49362:CDS |
| CATCGTTTGGTAATTGGTGA+AGG | 0.612762 | 1.1:+53448727 | None:intergenic |
| TTCGGGACATTCCTCCGGGT+CGG | 0.614158 | 1.1:+53449375 | None:intergenic |
| AGTCCAACGGTTACACTCAA+CGG | 0.615578 | 1.1:-53449947 | MS.gene49362:CDS |
| TTCATGGAAATTCTCAAGAG+AGG | 0.617223 | 1.1:-53450213 | MS.gene49362:CDS |
| TCCCGAACGTCGAGGCGCGG+AGG | 0.618120 | 1.1:-53449359 | MS.gene49362:CDS |
| ATGTCCCGAACGTCGAGGCG+CGG | 0.620714 | 1.1:-53449362 | MS.gene49362:CDS |
| CGAGAAACTCAAGTCCGACC+CGG | 0.620759 | 1.1:-53449389 | MS.gene49362:CDS |
| TGGAACTTAAGGAAGGTACA+AGG | 0.622837 | 1.1:-53450238 | MS.gene49362:CDS |
| GTTTCGGAGGATAAGAGAGA+GGG | 0.632682 | 1.1:-53448047 | MS.gene49362:CDS |
| AATGGATTATGGAATGGTAG+AGG | 0.636093 | 1.1:-53449816 | MS.gene49362:CDS |
| ATTATGGAATGGTAGAGGTG+TGG | 0.636364 | 1.1:-53449811 | MS.gene49362:CDS |
| CCTTAAGTTCCAGAACAGGA+AGG | 0.638162 | 1.1:+53450249 | None:intergenic |
| GTCGGTAAGTGAATTGGAGG+TGG | 0.638750 | 1.1:+53449143 | None:intergenic |
| AGTTTCGGAGGATAAGAGAG+AGG | 0.638762 | 1.1:-53448048 | MS.gene49362:CDS |
| GAAAATGTTGGGTGTAGCAG+AGG | 0.641929 | 1.1:-53449199 | MS.gene49362:CDS |
| AAAGCTTCAGAGATCTGCGT+CGG | 0.646577 | 1.1:-53450012 | MS.gene49362:CDS |
| GCTCCGTTGAGTGTAACCGT+TGG | 0.647311 | 1.1:+53449944 | None:intergenic |
| GATATGGCAGAGGAGATGAG+TGG | 0.651978 | 1.1:-53447971 | MS.gene49362:CDS |
| AACATATTCACAAACAGATG+GGG | 0.656999 | 1.1:-53450548 | MS.gene49362:CDS |
| TATTGTATATACCTCTGTGT+CGG | 0.662309 | 1.1:+53449125 | None:intergenic |
| GAAACTCAAGTCCGACCCGG+AGG | 0.662948 | 1.1:-53449386 | MS.gene49362:CDS |
| AAGGTTACCACCGTGGAAGG+CGG | 0.664796 | 1.1:-53448107 | MS.gene49362:CDS |
| ACCTCAATGTAACAAACTAG+AGG | 0.681842 | 1.1:-53447843 | MS.gene49362:CDS |
| ACTGCTCAGATAGCGACAGG+AGG | 0.695449 | 1.1:-53449258 | MS.gene49362:CDS |
| GAGGAATGTCCCGAACGTCG+AGG | 0.702069 | 1.1:-53449367 | MS.gene49362:CDS |
| CTGGACCGAACAGAAGAATG+CGG | 0.704211 | 1.1:+53449468 | None:intergenic |
| GACCGAACAGAAGAATGCGG+AGG | 0.708772 | 1.1:+53449471 | None:intergenic |
| AGGAGAAGGAAAATCCGAGG+AGG | 0.713917 | 1.1:-53448326 | MS.gene49362:CDS |
| AGTGTGTCGAGATCTTGAGA+AGG | 0.714039 | 1.1:+53449639 | None:intergenic |
| GAAGGAGAAGAAGATCTCAG+TGG | 0.714102 | 1.1:+53449534 | None:intergenic |
| GCAACTGCTAATGAGAACGA+CGG | 0.720590 | 1.1:-53450113 | MS.gene49362:CDS |
| GGAATCAAAGGTTACCACCG+TGG | 0.724541 | 1.1:-53448114 | MS.gene49362:CDS |
| CAGCATAGCGGAGATAACAG+CGG | 0.731770 | 1.1:-53448818 | MS.gene49362:CDS |
| CAATTCACTTACCGACACAG+AGG | 0.735333 | 1.1:-53449136 | MS.gene49362:intron |
| GGTGACGGTGATGACAACGC+CGG | 0.742306 | 1.1:+53450305 | None:intergenic |
| TAAGTTGCTGAACAGCATAG+CGG | 0.749606 | 1.1:-53448830 | MS.gene49362:CDS |
| TTAGACACCGCCTTCCACGG+TGG | 0.789038 | 1.1:+53448100 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATGTTAATTCTTA+TGG | - | chr1.1:53448580-53448599 | MS.gene49362:intron | 10.0% |
| !! | CAGTAAAAAAAAAAAATATT+CGG | + | chr1.1:53449500-53449519 | None:intergenic | 10.0% |
| !!! | AGTGTTATTGTTAGATTAAT+GGG | - | chr1.1:53448364-53448383 | MS.gene49362:CDS | 20.0% |
| ! | AAAACATATTCACAAACAGA+TGG | - | chr1.1:53447879-53447898 | MS.gene49362:CDS | 25.0% |
| ! | AAACATATTCACAAACAGAT+GGG | - | chr1.1:53447880-53447899 | MS.gene49362:CDS | 25.0% |
| ! | AAATAGGACAAGAAAAAAAG+AGG | + | chr1.1:53449789-53449808 | None:intergenic | 25.0% |
| ! | GATGATTATGATTATTCATC+TGG | + | chr1.1:53448525-53448544 | None:intergenic | 25.0% |
| ! | TCTTATGGTAACATTGATAA+TGG | - | chr1.1:53448595-53448614 | MS.gene49362:intron | 25.0% |
| ! | TGTAAAACCAAAACAAACAA+TGG | + | chr1.1:53448067-53448086 | None:intergenic | 25.0% |
| ! | TTTCTTCTTGAACTTATCTT+TGG | + | chr1.1:53449147-53449166 | None:intergenic | 25.0% |
| !! | CAGTGTTATTGTTAGATTAA+TGG | - | chr1.1:53448363-53448382 | MS.gene49362:CDS | 25.0% |
| !! | TGTGATGTAGAAGTATAAAT+TGG | - | chr1.1:53449536-53449555 | MS.gene49362:CDS | 25.0% |
| !!! | ATTGATAATGGATTATGGAA+TGG | - | chr1.1:53448607-53448626 | MS.gene49362:intron | 25.0% |
| !!! | GCTGTTTAATTTTACTTTAG+TGG | + | chr1.1:53447824-53447843 | None:intergenic | 25.0% |
| !!! | GTAACATTGATAATGGATTA+TGG | - | chr1.1:53448602-53448621 | MS.gene49362:intron | 25.0% |
| !!! | TGCATTGATTACAATTACAA+AGG | - | chr1.1:53449723-53449742 | MS.gene49362:CDS | 25.0% |
| !!! | TTGTGATTTTGTTTATGTGT+CGG | - | chr1.1:53450142-53450161 | MS.gene49362:CDS | 25.0% |
| AAATTCTTAACCGGAATCAA+AGG | - | chr1.1:53450303-53450322 | MS.gene49362:CDS | 30.0% | |
| AACAAACAATGGAGATTAGT+CGG | + | chr1.1:53448056-53448075 | None:intergenic | 30.0% | |
| AACATATTCACAAACAGATG+GGG | - | chr1.1:53447881-53447900 | MS.gene49362:CDS | 30.0% | |
| ATTGTAATCAATGCATCGTT+TGG | + | chr1.1:53449718-53449737 | None:intergenic | 30.0% | |
| CTCGTATTCAAGGATTTAAT+TGG | - | chr1.1:53450533-53450552 | MS.gene49362:CDS | 30.0% | |
| GAAAGCAAAGAATGAATTAC+CGG | + | chr1.1:53447991-53448010 | None:intergenic | 30.0% | |
| TATTGTATATACCTCTGTGT+CGG | + | chr1.1:53449307-53449326 | None:intergenic | 30.0% | |
| ! | AAAAGTACACTACTACACAA+TGG | + | chr1.1:53449981-53450000 | None:intergenic | 30.0% |
| ! | CTAATCTCCATTGTTTGTTT+TGG | - | chr1.1:53448057-53448076 | MS.gene49362:CDS | 30.0% |
| ! | GATGTAGAAGTATAAATTGG+AGG | - | chr1.1:53449539-53449558 | MS.gene49362:CDS | 30.0% |
| ! | TTGGATTTTCCAAGAGAAAT+AGG | + | chr1.1:53449805-53449824 | None:intergenic | 30.0% |
| !! | TCACTTTTGATCTCTTTAAC+CGG | + | chr1.1:53448148-53448167 | None:intergenic | 30.0% |
| !! | TTTTCTTGTCCTATTTCTCT+TGG | - | chr1.1:53449793-53449812 | MS.gene49362:CDS | 30.0% |
| !!! | TGTGTTTTAGTTGCTGATTA+TGG | - | chr1.1:53450023-53450042 | MS.gene49362:CDS | 30.0% |
| AACCCTGATGTCAAAATGAT+TGG | + | chr1.1:53449840-53449859 | None:intergenic | 35.0% | |
| AACTAAGTGACAGATTCGTT+GGG | + | chr1.1:53449954-53449973 | None:intergenic | 35.0% | |
| AAGATCTCAGTGGTTTCATT+AGG | + | chr1.1:53448888-53448907 | None:intergenic | 35.0% | |
| AAGCACAATGATTCGATCTA+TGG | - | chr1.1:53448727-53448746 | MS.gene49362:CDS | 35.0% | |
| ACCTCAATGTAACAAACTAG+AGG | - | chr1.1:53450586-53450605 | MS.gene49362:CDS | 35.0% | |
| AGAAGCAACAATTTCGTAAG+GGG | - | chr1.1:53450222-53450241 | MS.gene49362:CDS | 35.0% | |
| AGGAAAATGTCACAATCTTC+AGG | + | chr1.1:53450194-53450213 | None:intergenic | 35.0% | |
| AGTGGTTTCATTAGGACAAT+GGG | + | chr1.1:53448880-53448899 | None:intergenic | 35.0% | |
| CAACACTAAAAGATTACCTC+CGG | - | chr1.1:53447969-53447988 | MS.gene49362:CDS | 35.0% | |
| CATTAGCAGTTGCATTTGTT+CGG | + | chr1.1:53448309-53448328 | None:intergenic | 35.0% | |
| CTTATCTTTGGCGAATTAAC+CGG | + | chr1.1:53449135-53449154 | None:intergenic | 35.0% | |
| CTTTAGTTGTACAATCACGT+GGG | - | chr1.1:53449920-53449939 | MS.gene49362:CDS | 35.0% | |
| GAGAAAAGTGATTGATCCTA+AGG | - | chr1.1:53449206-53449225 | MS.gene49362:CDS | 35.0% | |
| GAGAAATCAGAGAAAGATGA+TGG | - | chr1.1:53448097-53448116 | MS.gene49362:CDS | 35.0% | |
| GAGAAGCAACAATTTCGTAA+GGG | - | chr1.1:53450221-53450240 | MS.gene49362:CDS | 35.0% | |
| GATCCTAAGGTGAAAATGTT+GGG | - | chr1.1:53449219-53449238 | MS.gene49362:CDS | 35.0% | |
| TAACACTGCAGATCAATCTA+CGG | - | chr1.1:53450055-53450074 | MS.gene49362:CDS | 35.0% | |
| TAGATCGAATCATTGTGCTT+TGG | + | chr1.1:53448727-53448746 | None:intergenic | 35.0% | |
| TCATCTTTCTCTGATTTCTC+CGG | + | chr1.1:53448097-53448116 | None:intergenic | 35.0% | |
| TCTATGGAGAGATTGAGAAA+AGG | - | chr1.1:53448743-53448762 | MS.gene49362:CDS | 35.0% | |
| TCTTTAGTTGTACAATCACG+TGG | - | chr1.1:53449919-53449938 | MS.gene49362:CDS | 35.0% | |
| TGAGAAGCAACAATTTCGTA+AGG | - | chr1.1:53450220-53450239 | MS.gene49362:CDS | 35.0% | |
| TGATCCTAAGGTGAAAATGT+TGG | - | chr1.1:53449218-53449237 | MS.gene49362:CDS | 35.0% | |
| TGCCAGAAAGAAAATGGTTA+CGG | + | chr1.1:53447936-53447955 | None:intergenic | 35.0% | |
| TGGAAAATCCAAAACCTATG+TGG | - | chr1.1:53449813-53449832 | MS.gene49362:CDS | 35.0% | |
| TTCATGGAAATTCTCAAGAG+AGG | - | chr1.1:53448216-53448235 | MS.gene49362:CDS | 35.0% | |
| TTTAGTTGTACAATCACGTG+GGG | - | chr1.1:53449921-53449940 | MS.gene49362:CDS | 35.0% | |
| ! | AAATTGGAGGAGTACAAAGA+AGG | - | chr1.1:53449552-53449571 | MS.gene49362:CDS | 35.0% |
| ! | AATTGGAGGAGTACAAAGAA+GGG | - | chr1.1:53449553-53449572 | MS.gene49362:CDS | 35.0% |
| ! | ATCAGATTTGGTCAGAGTTT+CGG | - | chr1.1:53450366-53450385 | MS.gene49362:intron | 35.0% |
| ! | ATTGTTGCTTCTCAAGTAGA+AGG | + | chr1.1:53450214-53450233 | None:intergenic | 35.0% |
| ! | GATTTGTTTGGAGTGATATG+TGG | - | chr1.1:53450422-53450441 | MS.gene49362:intron | 35.0% |
| ! | TAACCGTTGGACTTCAATTT+TGG | + | chr1.1:53448475-53448494 | None:intergenic | 35.0% |
| ! | TCAAAATGATTGGTCCACAT+AGG | + | chr1.1:53449830-53449849 | None:intergenic | 35.0% |
| ! | TCAATGCATCGTTTGGTAAT+TGG | + | chr1.1:53449711-53449730 | None:intergenic | 35.0% |
| ! | TCTGAATCAGAGGATTTGTT+TGG | - | chr1.1:53450410-53450429 | MS.gene49362:intron | 35.0% |
| !! | AATGGATTATGGAATGGTAG+AGG | - | chr1.1:53448613-53448632 | MS.gene49362:intron | 35.0% |
| !! | GACCAATCATTTTGACATCA+GGG | - | chr1.1:53449835-53449854 | MS.gene49362:CDS | 35.0% |
| !! | TCAATCACTTTTCTCATCCT+AGG | + | chr1.1:53449201-53449220 | None:intergenic | 35.0% |
| !! | TCTTGACTCGTCTTTTTACA+AGG | - | chr1.1:53449665-53449684 | MS.gene49362:CDS | 35.0% |
| AAAACAAGTCCTTCCTGTTC+TGG | - | chr1.1:53448171-53448190 | MS.gene49362:CDS | 40.0% | |
| AAACGAGTTACAACCTAGTC+CGG | - | chr1.1:53449635-53449654 | MS.gene49362:CDS | 40.0% | |
| AGAAAAGGTTGAAGATGCGT+GGG | - | chr1.1:53448758-53448777 | MS.gene49362:CDS | 40.0% | |
| AGCAAAGAATGAATTACCGG+AGG | + | chr1.1:53447988-53448007 | None:intergenic | 40.0% | |
| ATTATGGAATGGTAGAGGTG+TGG | - | chr1.1:53448618-53448637 | MS.gene49362:intron | 40.0% | |
| CAACTAAGTGACAGATTCGT+TGG | + | chr1.1:53449955-53449974 | None:intergenic | 40.0% | |
| CACACTCAAGCATATCTTAG+AGG | - | chr1.1:53448807-53448826 | MS.gene49362:CDS | 40.0% | |
| CAGTGGTTTCATTAGGACAA+TGG | + | chr1.1:53448881-53448900 | None:intergenic | 40.0% | |
| CATTTGTTCGGATCTCTCTA+GGG | + | chr1.1:53448297-53448316 | None:intergenic | 40.0% | |
| CGGAATCAGAAGATGATATG+TGG | - | chr1.1:53450075-53450094 | MS.gene49362:CDS | 40.0% | |
| CGTTGCAGGAAATTCTTAAC+CGG | - | chr1.1:53450294-53450313 | MS.gene49362:CDS | 40.0% | |
| CTGCTATCTAAAGAAAGCCT+AGG | + | chr1.1:53448244-53448263 | None:intergenic | 40.0% | |
| GAGCCAAAATTGAAGTCCAA+CGG | - | chr1.1:53448469-53448488 | MS.gene49362:intron | 40.0% | |
| GAGCTCGATCATCAAATCTT+GGG | + | chr1.1:53449011-53449030 | None:intergenic | 40.0% | |
| GATATGTGGTGTGTTGAAGA+AGG | - | chr1.1:53450436-53450455 | MS.gene49362:intron | 40.0% | |
| GCAGAATAAGGGAACAATGA+TGG | - | chr1.1:53448657-53448676 | MS.gene49362:intron | 40.0% | |
| TAAGTTGCTGAACAGCATAG+CGG | - | chr1.1:53449599-53449618 | MS.gene49362:CDS | 40.0% | |
| TCATTAGGACAATGGGAGAT+TGG | + | chr1.1:53448873-53448892 | None:intergenic | 40.0% | |
| TGACATCAGGGTTAATGACT+TGG | - | chr1.1:53449847-53449866 | MS.gene49362:CDS | 40.0% | |
| TGAGATCTTCTTCTCCTTCT+CGG | - | chr1.1:53448899-53448918 | MS.gene49362:intron | 40.0% | |
| TGAGCTCGATCATCAAATCT+TGG | + | chr1.1:53449012-53449031 | None:intergenic | 40.0% | |
| TGCGTTTGCCAGAAAGAAAA+TGG | + | chr1.1:53447942-53447961 | None:intergenic | 40.0% | |
| TGGTGTGTTGAAGAAGGATA+TGG | - | chr1.1:53450442-53450461 | MS.gene49362:intron | 40.0% | |
| TTCGAGCGGTTTAATAGAAC+CGG | - | chr1.1:53448922-53448941 | MS.gene49362:intron | 40.0% | |
| TTGATCTCTTTAACCGGTGA+CGG | + | chr1.1:53448142-53448161 | None:intergenic | 40.0% | |
| ! | AATGGAGATTAGTCGGTCAT+TGG | + | chr1.1:53448049-53448068 | None:intergenic | 40.0% |
| ! | ACACCCAACATTTTCACCTT+AGG | + | chr1.1:53449225-53449244 | None:intergenic | 40.0% |
| ! | AGAGAAAGATGATGGCAAAC+CGG | - | chr1.1:53448105-53448124 | MS.gene49362:CDS | 40.0% |
| ! | ATGGAGATTAGTCGGTCATT+GGG | + | chr1.1:53448048-53448067 | None:intergenic | 40.0% |
| ! | CATCGTTTGGTAATTGGTGA+AGG | + | chr1.1:53449705-53449724 | None:intergenic | 40.0% |
| ! | GAATCATTGTGCTTTGGTTC+AGG | + | chr1.1:53448721-53448740 | None:intergenic | 40.0% |
| ! | GACCGTAACCATTTTCTTTC+TGG | - | chr1.1:53447931-53447950 | MS.gene49362:CDS | 40.0% |
| ! | GTTAATTTTCGACACGTTGC+AGG | - | chr1.1:53450280-53450299 | MS.gene49362:CDS | 40.0% |
| ! | TGGAACTTAAGGAAGGTACA+AGG | - | chr1.1:53448191-53448210 | MS.gene49362:CDS | 40.0% |
| !! | ATGACTTGGCATGACTTGTT+TGG | - | chr1.1:53449861-53449880 | MS.gene49362:CDS | 40.0% |
| !! | GAAGCTATTCTCTGAAACTG+TGG | + | chr1.1:53449265-53449284 | None:intergenic | 40.0% |
| !! | GCCTCTAGTTTGTTACATTG+AGG | + | chr1.1:53450590-53450609 | None:intergenic | 40.0% |
| !! | GGACCAATCATTTTGACATC+AGG | - | chr1.1:53449834-53449853 | MS.gene49362:CDS | 40.0% |
| !! | TGATTCTAGAAGAGTGTCTC+CGG | - | chr1.1:53449113-53449132 | MS.gene49362:intron | 40.0% |
| !! | TGATTGGTCCACATAGGTTT+TGG | + | chr1.1:53449824-53449843 | None:intergenic | 40.0% |
| !!! | TTTGGTTTTACAGCCTTCTC+CGG | - | chr1.1:53448075-53448094 | MS.gene49362:CDS | 40.0% |
| AAAGCTTCAGAGATCTGCGT+CGG | - | chr1.1:53448417-53448436 | MS.gene49362:intron | 45.0% | |
| AATTCTCAAGAGAGGCTCCT+AGG | - | chr1.1:53448224-53448243 | MS.gene49362:CDS | 45.0% | |
| ACGGTGGTAACCTTTGATTC+CGG | + | chr1.1:53450316-53450335 | None:intergenic | 45.0% | |
| AGAATCATAGCGAGTCATCG+TGG | - | chr1.1:53449393-53449412 | MS.gene49362:CDS | 45.0% | |
| AGAGCAGTTGTTGATGCCAA+AGG | - | chr1.1:53448262-53448281 | MS.gene49362:CDS | 45.0% | |
| AGGAAGAGGGAAGCAGAATA+AGG | - | chr1.1:53448645-53448664 | MS.gene49362:intron | 45.0% | |
| AGTCCAACGGTTACACTCAA+CGG | - | chr1.1:53448482-53448501 | MS.gene49362:intron | 45.0% | |
| AGTGTGTCGAGATCTTGAGA+AGG | + | chr1.1:53448793-53448812 | None:intergenic | 45.0% | |
| AGTTTCGGAGGATAAGAGAG+AGG | - | chr1.1:53450381-53450400 | MS.gene49362:intron | 45.0% | |
| CAATTCACTTACCGACACAG+AGG | - | chr1.1:53449293-53449312 | MS.gene49362:CDS | 45.0% | |
| CAGTTGTTGATGCCAAAGGA+GGG | - | chr1.1:53448266-53448285 | MS.gene49362:CDS | 45.0% | |
| CATCGAACGACTCGTATTCA+AGG | - | chr1.1:53450523-53450542 | MS.gene49362:CDS | 45.0% | |
| CCTTAAGTTCCAGAACAGGA+AGG | + | chr1.1:53448183-53448202 | None:intergenic | 45.0% | |
| CCTTCCTTAAGTTCCAGAAC+AGG | + | chr1.1:53448187-53448206 | None:intergenic | 45.0% | |
| GAAAATGTTGGGTGTAGCAG+AGG | - | chr1.1:53449230-53449249 | MS.gene49362:CDS | 45.0% | |
| GAAGATGATATGTGGAGTGC+AGG | - | chr1.1:53450083-53450102 | MS.gene49362:CDS | 45.0% | |
| GAAGGAGAAGAAGATCTCAG+TGG | + | chr1.1:53448898-53448917 | None:intergenic | 45.0% | |
| GACTCATTACCATCGGATTC+CGG | - | chr1.1:53448391-53448410 | MS.gene49362:intron | 45.0% | |
| GAGAAAAGGTTGAAGATGCG+TGG | - | chr1.1:53448757-53448776 | MS.gene49362:CDS | 45.0% | |
| GAGAGGAGACACATCAGATT+TGG | - | chr1.1:53450354-53450373 | MS.gene49362:intron | 45.0% | |
| GCAACAATTTCGTAAGGGGA+AGG | - | chr1.1:53450226-53450245 | MS.gene49362:CDS | 45.0% | |
| GCAACTGCTAATGAGAACGA+CGG | - | chr1.1:53448316-53448335 | MS.gene49362:CDS | 45.0% | |
| GCATTTGTTCGGATCTCTCT+AGG | + | chr1.1:53448298-53448317 | None:intergenic | 45.0% | |
| GGAAGAGGGAAGCAGAATAA+GGG | - | chr1.1:53448646-53448665 | MS.gene49362:intron | 45.0% | |
| GGGTCTTGACTCATTACCAT+CGG | - | chr1.1:53448384-53448403 | MS.gene49362:intron | 45.0% | |
| GTTACAACCTAGTCCGGTAT+CGG | - | chr1.1:53449641-53449660 | MS.gene49362:CDS | 45.0% | |
| GTTGAAGAAGGATATGGCAG+AGG | - | chr1.1:53450448-53450467 | MS.gene49362:intron | 45.0% | |
| GTTTCGGAGGATAAGAGAGA+GGG | - | chr1.1:53450382-53450401 | MS.gene49362:intron | 45.0% | |
| TACACTCAACGGAGCAATGT+CGG | - | chr1.1:53448493-53448512 | MS.gene49362:intron | 45.0% | |
| TGTCGAGATCTTGAGAAGGT+TGG | + | chr1.1:53448789-53448808 | None:intergenic | 45.0% | |
| TTAGAGGCTCTGCAGCTTAA+AGG | - | chr1.1:53448823-53448842 | MS.gene49362:CDS | 45.0% | |
| TTCTCTGATTTCTCCGGAGA+AGG | + | chr1.1:53448091-53448110 | None:intergenic | 45.0% | |
| ! | AGATTAGTCGGTCATTGGGT+CGG | + | chr1.1:53448044-53448063 | None:intergenic | 45.0% |
| ! | AGATTTGGTCAGAGTTTCGG+AGG | - | chr1.1:53450369-53450388 | MS.gene49362:intron | 45.0% |
| ! | AGGAAGGTACAAGGTCTTCA+TGG | - | chr1.1:53448200-53448219 | MS.gene49362:CDS | 45.0% |
| ! | CGTCTTTTTACAAGGACGAG+TGG | - | chr1.1:53449673-53449692 | MS.gene49362:CDS | 45.0% |
| ! | CTCTGTGTCGGTAAGTGAAT+TGG | + | chr1.1:53449295-53449314 | None:intergenic | 45.0% |
| ! | TGTGTCGGTAAGTGAATTGG+AGG | + | chr1.1:53449292-53449311 | None:intergenic | 45.0% |
| !! | CCTGTTCTGGAACTTAAGGA+AGG | - | chr1.1:53448184-53448203 | MS.gene49362:CDS | 45.0% |
| !! | CCTTCCTGTTCTGGAACTTA+AGG | - | chr1.1:53448180-53448199 | MS.gene49362:CDS | 45.0% |
| !!! | AAGCAGACTCTGCTGTTTTG+AGG | + | chr1.1:53449900-53449919 | None:intergenic | 45.0% |
| AAGTCGATCTCTCGAGACTC+TGG | + | chr1.1:53448446-53448465 | None:intergenic | 50.0% | |
| AGAAGGAAAATCCGAGGAGG+AGG | - | chr1.1:53450106-53450125 | MS.gene49362:CDS | 50.0% | |
| AGATGAGTGGTTGGGGTGAA+TGG | - | chr1.1:53450471-53450490 | MS.gene49362:CDS | 50.0% | |
| AGGAGAAGGAAAATCCGAGG+AGG | - | chr1.1:53450103-53450122 | MS.gene49362:CDS | 50.0% | |
| ATCCGAGGAGGAGGCAAAAT+TGG | - | chr1.1:53450115-53450134 | MS.gene49362:CDS | 50.0% | |
| CGGAGGAGGAGAATCATAAC+CGG | + | chr1.1:53448944-53448963 | None:intergenic | 50.0% | |
| CTCCTCCGCATTCTTCTGTT+CGG | - | chr1.1:53448956-53448975 | MS.gene49362:intron | 50.0% | |
| CTGGACCGAACAGAAGAATG+CGG | + | chr1.1:53448964-53448983 | None:intergenic | 50.0% | |
| GACGAGTCAAGAACCGATAC+CGG | + | chr1.1:53449657-53449676 | None:intergenic | 50.0% | |
| GAGGGAGGAATCTGAATCAG+AGG | - | chr1.1:53450400-53450419 | MS.gene49362:intron | 50.0% | |
| GATATGGCAGAGGAGATGAG+TGG | - | chr1.1:53450458-53450477 | MS.gene49362:intron | 50.0% | |
| GATATGTGGAGTGCAGGAGA+AGG | - | chr1.1:53450089-53450108 | MS.gene49362:CDS | 50.0% | |
| GCAGTTGTTGATGCCAAAGG+AGG | - | chr1.1:53448265-53448284 | MS.gene49362:CDS | 50.0% | |
| GGAATCAAAGGTTACCACCG+TGG | - | chr1.1:53450315-53450334 | MS.gene49362:CDS | 50.0% | |
| GTCGGTAAGTGAATTGGAGG+TGG | + | chr1.1:53449289-53449308 | None:intergenic | 50.0% | |
| TCAAAGGTTACCACCGTGGA+AGG | - | chr1.1:53450319-53450338 | MS.gene49362:CDS | 50.0% | |
| TCAAGAACCGATACCGGACT+AGG | + | chr1.1:53449651-53449670 | None:intergenic | 50.0% | |
| TCACAAACAGATGGGGTGCA+TGG | - | chr1.1:53447888-53447907 | MS.gene49362:CDS | 50.0% | |
| TGCAGGAGAAGGAAAATCCG+AGG | - | chr1.1:53450100-53450119 | MS.gene49362:CDS | 50.0% | |
| TGGGTGTAGCAGAGGATGAA+TGG | - | chr1.1:53449238-53449257 | MS.gene49362:CDS | 50.0% | |
| TTAAACCGCTCGAACCGAGA+AGG | + | chr1.1:53448916-53448935 | None:intergenic | 50.0% | |
| ! | AATGGTAGAGGTGTGGAAGG+AGG | - | chr1.1:53448625-53448644 | MS.gene49362:intron | 50.0% |
| ! | CAGCATAGCGGAGATAACAG+CGG | - | chr1.1:53449611-53449630 | MS.gene49362:CDS | 50.0% |
| ! | CGGAGGAGGGTTAGTAATGA+GGG | - | chr1.1:53449087-53449106 | MS.gene49362:intron | 50.0% |
| ! | CTCCAATTTTGCCTCCTCCT+CGG | + | chr1.1:53450120-53450139 | None:intergenic | 50.0% |
| ! | TGGAATGGTAGAGGTGTGGA+AGG | - | chr1.1:53448622-53448641 | MS.gene49362:intron | 50.0% |
| ! | TGGAGGAGTACAAAGAAGGG+AGG | - | chr1.1:53449556-53449575 | MS.gene49362:CDS | 50.0% |
| !! | AGATCTCTGAAGCTTTGCGC+CGG | + | chr1.1:53448413-53448432 | None:intergenic | 50.0% |
| !! | GGAGATGGGAGATGTCGTTT+TGG | - | chr1.1:53450499-53450518 | MS.gene49362:CDS | 50.0% |
| AAACAGATGGGGTGCATGGC+TGG | - | chr1.1:53447892-53447911 | MS.gene49362:CDS | 55.0% | |
| AAGGTTACCACCGTGGAAGG+CGG | - | chr1.1:53450322-53450341 | MS.gene49362:CDS | 55.0% | |
| ACTGCTCAGATAGCGACAGG+AGG | - | chr1.1:53449171-53449190 | MS.gene49362:CDS | 55.0% | |
| CAAAAGCTTCGACGCTGCAG+AGG | - | chr1.1:53450255-53450274 | MS.gene49362:CDS | 55.0% | |
| CGAACAGAAGAATGCGGAGG+AGG | + | chr1.1:53448958-53448977 | None:intergenic | 55.0% | |
| CGAGAAACTCAAGTCCGACC+CGG | - | chr1.1:53449040-53449059 | MS.gene49362:intron | 55.0% | |
| CGAGGAGGAGGCAAAATTGG+AGG | - | chr1.1:53450118-53450137 | MS.gene49362:CDS | 55.0% | |
| GACCGAACAGAAGAATGCGG+AGG | + | chr1.1:53448961-53448980 | None:intergenic | 55.0% | |
| GAGGTGTGGAAGGAGGAAGA+GGG | - | chr1.1:53448632-53448651 | MS.gene49362:intron | 55.0% | |
| GAGTGGTTGGGGTGAATGGA+CGG | - | chr1.1:53450475-53450494 | MS.gene49362:CDS | 55.0% | |
| GCAACTGCTCAGATAGCGAC+AGG | - | chr1.1:53449168-53449187 | MS.gene49362:CDS | 55.0% | |
| GCAGAGGAGATGAGTGGTTG+GGG | - | chr1.1:53450464-53450483 | MS.gene49362:CDS | 55.0% | |
| GCTCCGTTGAGTGTAACCGT+TGG | + | chr1.1:53448488-53448507 | None:intergenic | 55.0% | |
| GGCAGAGGAGATGAGTGGTT+GGG | - | chr1.1:53450463-53450482 | MS.gene49362:CDS | 55.0% | |
| GGTGAATGGACGGTGGAGAT+GGG | - | chr1.1:53450485-53450504 | MS.gene49362:CDS | 55.0% | |
| TAGCGACAGGAGGATCTCCT+AGG | - | chr1.1:53449181-53449200 | MS.gene49362:CDS | 55.0% | |
| TCGGAGGATAAGAGAGAGGG+AGG | - | chr1.1:53450385-53450404 | MS.gene49362:intron | 55.0% | |
| TGGCAGAGGAGATGAGTGGT+TGG | - | chr1.1:53450462-53450481 | MS.gene49362:CDS | 55.0% | |
| ! | AGAGGTGTGGAAGGAGGAAG+AGG | - | chr1.1:53448631-53448650 | MS.gene49362:intron | 55.0% |
| ! | CTTCTCCTTCTCGGTTCGAG+CGG | - | chr1.1:53448908-53448927 | MS.gene49362:intron | 55.0% |
| ! | GCGGAGGAGGGTTAGTAATG+AGG | - | chr1.1:53449086-53449105 | MS.gene49362:intron | 55.0% |
| ! | TCAACGGAGCAATGTCGGCT+CGG | - | chr1.1:53448498-53448517 | MS.gene49362:intron | 55.0% |
| ! | TCTAGGGTGAAGCCCTCCTT+TGG | + | chr1.1:53448281-53448300 | None:intergenic | 55.0% |
| AAGCTTCGACGCTGCAGAGG+CGG | - | chr1.1:53450258-53450277 | MS.gene49362:CDS | 60.0% | |
| ACCGTGGAAGGCGGTGTCTA+AGG | - | chr1.1:53450331-53450350 | MS.gene49362:CDS | 60.0% | |
| AGCTTTGCGCCGGAATCCGA+TGG | + | chr1.1:53448403-53448422 | None:intergenic | 60.0% | |
| CCCTTAGACACCGCCTTCCA+CGG | + | chr1.1:53450335-53450354 | None:intergenic | 60.0% | |
| CCGTGGAAGGCGGTGTCTAA+GGG | - | chr1.1:53450332-53450351 | MS.gene49362:CDS | 60.0% | |
| CGACGTTCGGGACATTCCTC+CGG | + | chr1.1:53449062-53449081 | None:intergenic | 60.0% | |
| CTCAAGTTCCGACGAGCACG+AGG | + | chr1.1:53448988-53449007 | None:intergenic | 60.0% | |
| GAAACTCAAGTCCGACCCGG+AGG | - | chr1.1:53449043-53449062 | MS.gene49362:intron | 60.0% | |
| GAAGGCGGTGTCTAAGGGAG+AGG | - | chr1.1:53450337-53450356 | MS.gene49362:CDS | 60.0% | |
| GACGTTCGGGACATTCCTCC+GGG | + | chr1.1:53449061-53449080 | None:intergenic | 60.0% | |
| GAGGAATGTCCCGAACGTCG+AGG | - | chr1.1:53449062-53449081 | MS.gene49362:intron | 60.0% | |
| GGCGTTGTCATCACCGTCAC+CGG | - | chr1.1:53448126-53448145 | MS.gene49362:CDS | 60.0% | |
| GGGTGAATGGACGGTGGAGA+TGG | - | chr1.1:53450484-53450503 | MS.gene49362:CDS | 60.0% | |
| TGGTTGGGGTGAATGGACGG+TGG | - | chr1.1:53450478-53450497 | MS.gene49362:CDS | 60.0% | |
| TTAGACACCGCCTTCCACGG+TGG | + | chr1.1:53450332-53450351 | None:intergenic | 60.0% | |
| TTCGGGACATTCCTCCGGGT+CGG | + | chr1.1:53449057-53449076 | None:intergenic | 60.0% | |
| ! | GGTGACGGTGATGACAACGC+CGG | + | chr1.1:53448127-53448146 | None:intergenic | 60.0% |
| !! | CAACGGAGCAATGTCGGCTC+GGG | - | chr1.1:53448499-53448518 | MS.gene49362:intron | 60.0% |
| ATGTCCCGAACGTCGAGGCG+CGG | - | chr1.1:53449067-53449086 | MS.gene49362:intron | 65.0% | |
| GGTCCAGTCCTCGTGCTCGT+CGG | - | chr1.1:53448977-53448996 | MS.gene49362:intron | 65.0% | |
| GTTCCGACGAGCACGAGGAC+TGG | + | chr1.1:53448983-53449002 | None:intergenic | 65.0% | |
| CTCCTCCGCGCCTCGACGTT+CGG | + | chr1.1:53449075-53449094 | None:intergenic | 70.0% | |
| GAACGTCGAGGCGCGGAGGA+GGG | - | chr1.1:53449074-53449093 | MS.gene49362:intron | 70.0% | |
| TCCTCCGCGCCTCGACGTTC+GGG | + | chr1.1:53449074-53449093 | None:intergenic | 70.0% | |
| CGAACGTCGAGGCGCGGAGG+AGG | - | chr1.1:53449073-53449092 | MS.gene49362:intron | 75.0% | |
| TCCCGAACGTCGAGGCGCGG+AGG | - | chr1.1:53449070-53449089 | MS.gene49362:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 53447817 | 53450634 | 53447817 | ID=MS.gene49362 |
| chr1.1 | mRNA | 53447817 | 53450634 | 53447817 | ID=MS.gene49362.t1;Parent=MS.gene49362 |
| chr1.1 | exon | 53450461 | 53450634 | 53450461 | ID=MS.gene49362.t1.exon1;Parent=MS.gene49362.t1 |
| chr1.1 | CDS | 53450461 | 53450634 | 53450461 | ID=cds.MS.gene49362.t1;Parent=MS.gene49362.t1 |
| chr1.1 | exon | 53449137 | 53450363 | 53449137 | ID=MS.gene49362.t1.exon2;Parent=MS.gene49362.t1 |
| chr1.1 | CDS | 53449137 | 53450363 | 53449137 | ID=cds.MS.gene49362.t1;Parent=MS.gene49362.t1 |
| chr1.1 | exon | 53448707 | 53448905 | 53448707 | ID=MS.gene49362.t1.exon3;Parent=MS.gene49362.t1 |
| chr1.1 | CDS | 53448707 | 53448905 | 53448707 | ID=cds.MS.gene49362.t1;Parent=MS.gene49362.t1 |
| chr1.1 | exon | 53447817 | 53448385 | 53447817 | ID=MS.gene49362.t1.exon4;Parent=MS.gene49362.t1 |
| chr1.1 | CDS | 53447817 | 53448385 | 53447817 | ID=cds.MS.gene49362.t1;Parent=MS.gene49362.t1 |
| Gene Sequence |
| Protein sequence |
