Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49552.t1 | XP_003613633.1 | 99.7 | 332 | 1 | 0 | 1 | 332 | 1 | 332 | 4.70E-192 | 680.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49552.t1 | Q9M9S6 | 88.8 | 331 | 37 | 0 | 1 | 331 | 1 | 331 | 2.1e-177 | 622.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49552.t1 | Q2HTW1 | 99.7 | 332 | 1 | 0 | 1 | 332 | 1 | 332 | 3.4e-192 | 680.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene06113 | MS.gene49552 | 0.820292 | 7.41E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49552.t1 | MTR_5g038900 | 99.699 | 332 | 1 | 0 | 1 | 332 | 1 | 332 | 0.0 | 677 |
| MS.gene49552.t1 | MTR_2g096300 | 32.550 | 298 | 195 | 4 | 16 | 311 | 28 | 321 | 1.38e-35 | 132 |
| MS.gene49552.t1 | MTR_4g063040 | 30.794 | 315 | 196 | 5 | 14 | 318 | 27 | 329 | 1.69e-32 | 124 |
| MS.gene49552.t1 | MTR_7g076310 | 24.756 | 307 | 200 | 9 | 17 | 315 | 27 | 310 | 1.92e-15 | 76.6 |
| MS.gene49552.t1 | MTR_7g076310 | 26.250 | 240 | 161 | 6 | 81 | 315 | 58 | 286 | 3.72e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49552.t1 | AT1G14360 | 88.822 | 331 | 37 | 0 | 1 | 331 | 1 | 331 | 0.0 | 604 |
| MS.gene49552.t1 | AT2G02810 | 83.434 | 332 | 55 | 0 | 1 | 332 | 1 | 332 | 0.0 | 568 |
| MS.gene49552.t1 | AT3G46180 | 30.769 | 325 | 212 | 4 | 15 | 331 | 21 | 340 | 1.50e-31 | 121 |
| MS.gene49552.t1 | AT5G59740 | 31.429 | 315 | 208 | 3 | 15 | 326 | 20 | 329 | 3.99e-30 | 117 |
| MS.gene49552.t1 | AT3G46180 | 32.472 | 271 | 173 | 4 | 15 | 281 | 21 | 285 | 1.56e-27 | 109 |
| MS.gene49552.t1 | AT1G12600 | 25.828 | 302 | 195 | 9 | 17 | 311 | 29 | 308 | 3.50e-17 | 81.6 |
| MS.gene49552.t1 | AT4G23010 | 28.922 | 204 | 132 | 5 | 102 | 302 | 102 | 295 | 3.38e-15 | 75.9 |
| MS.gene49552.t1 | AT4G23010 | 27.397 | 219 | 133 | 6 | 102 | 302 | 102 | 312 | 2.09e-13 | 70.9 |
Find 91 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGTTAGGCATGAATTTA+TGG | 0.174481 | 5.4:+28869014 | MS.gene49552:CDS |
| GTGCTCCTTGGTGGTCTTAT+TGG | 0.176225 | 5.4:+28865878 | MS.gene49552:CDS |
| CCAAATGCTCCTCTTGGATA+TGG | 0.204631 | 5.4:+28868162 | MS.gene49552:CDS |
| AGGAAGGTACAAAGGTATTC+TGG | 0.244279 | 5.4:-28867966 | None:intergenic |
| CTTTGTACCTTCCTTGTTGC+TGG | 0.252082 | 5.4:+28867975 | MS.gene49552:CDS |
| AGAACGTGGTTTGTTTAATT+TGG | 0.267247 | 5.4:+28865226 | MS.gene49552:CDS |
| AAAATATCCCATGCTGCTTC+TGG | 0.276882 | 5.4:-28869118 | None:intergenic |
| CCTTCTGCGTCGCCGGAATC+TGG | 0.296006 | 5.4:+28865007 | MS.gene49552:CDS |
| TATGTTAGGCATGAATTTAT+GGG | 0.332949 | 5.4:+28869015 | MS.gene49552:CDS |
| ATCTGGGGTGGTGGAAATAC+TGG | 0.354736 | 5.4:+28865853 | MS.gene49552:CDS |
| CTTCAATGCAGTTATGTTGA+TGG | 0.358209 | 5.4:+28867911 | MS.gene49552:intron |
| AATATACGCCGACCAGATTC+CGG | 0.360790 | 5.4:-28865019 | None:intergenic |
| TTCTTGACTATAAGCCGGTT+TGG | 0.375249 | 5.4:+28869181 | MS.gene49552:CDS |
| CATGTAAATCATATTGTATA+TGG | 0.377775 | 5.4:-28869041 | None:intergenic |
| TTCAGGTCAACGAAGCGATT+TGG | 0.380895 | 5.4:+28865156 | MS.gene49552:intron |
| TATTTACCAAGGCATTCTTC+AGG | 0.383876 | 5.4:+28865038 | MS.gene49552:CDS |
| GCTGGAATTACTAATACTAT+TGG | 0.396641 | 5.4:+28865904 | MS.gene49552:CDS |
| AGTGCTTGGGGTATTATGTT+AGG | 0.400827 | 5.4:+28869001 | MS.gene49552:CDS |
| TCCCCTTTCAACAAAGCAAT+GGG | 0.410772 | 5.4:+28869279 | MS.gene49552:CDS |
| TTCATCATTTGCACTTCTAA+AGG | 0.417139 | 5.4:+28868004 | MS.gene49552:CDS |
| TGTGTTACTATGGTATTCTC+TGG | 0.427170 | 5.4:+28869304 | MS.gene49552:CDS |
| TGGTGGTCTTATTGGAGTGC+TGG | 0.428422 | 5.4:+28865886 | MS.gene49552:CDS |
| GAAATACTGGTGGTGCTCCT+TGG | 0.431303 | 5.4:+28865866 | MS.gene49552:CDS |
| TTGATGGGTTCACTCGTATA+CGG | 0.431609 | 5.4:+28867927 | MS.gene49552:CDS |
| TATGTGTAGTGATAAAGATC+TGG | 0.434418 | 5.4:+28865836 | MS.gene49552:intron |
| TAATACTATTGGTCCTGCTA+TGG | 0.436414 | 5.4:+28865915 | MS.gene49552:CDS |
| CCATATCCAAGAGGAGCATT+TGG | 0.439599 | 5.4:-28868162 | None:intergenic |
| GTCCTCGCCTTCTGCGTCGC+CGG | 0.445892 | 5.4:+28865000 | MS.gene49552:CDS |
| GGAAGGTACAAAGGTATTCT+GGG | 0.451346 | 5.4:-28867965 | None:intergenic |
| GCACATCCAAATGCTCCTCT+TGG | 0.463943 | 5.4:+28868156 | MS.gene49552:CDS |
| CAAATGCTCCTCTTGGATAT+GGG | 0.465849 | 5.4:+28868163 | MS.gene49552:CDS |
| TTCAATGCAGTTATGTTGAT+GGG | 0.470619 | 5.4:+28867912 | MS.gene49552:intron |
| TCTGCCACTTGAGGTAGATC+TGG | 0.486763 | 5.4:-28869336 | None:intergenic |
| GCCAAGTGGTAGTGGATATG+AGG | 0.489109 | 5.4:+28869072 | MS.gene49552:CDS |
| GTGATAAAGATCTGGGGTGG+TGG | 0.491170 | 5.4:+28865844 | MS.gene49552:intron |
| ATACTGGTGGTGCTCCTTGG+TGG | 0.493880 | 5.4:+28865869 | MS.gene49552:CDS |
| GTATATTAGTTACCCTGCTC+AGG | 0.494178 | 5.4:+28865954 | MS.gene49552:CDS |
| AAAGCTTCAATTCCCATAGC+AGG | 0.502581 | 5.4:-28865928 | None:intergenic |
| TGTTAGCTAAAGAGCCAAAC+CGG | 0.504636 | 5.4:-28869195 | None:intergenic |
| TTATATTCTTGACTATAAGC+CGG | 0.511449 | 5.4:+28869176 | MS.gene49552:CDS |
| CGACGCAGAAGGCGAGGACA+AGG | 0.518457 | 5.4:-28864996 | None:intergenic |
| ATGTGTAGTGATAAAGATCT+GGG | 0.519385 | 5.4:+28865837 | MS.gene49552:intron |
| TTTGAACTTGGCGCAGAACG+TGG | 0.519954 | 5.4:+28865212 | MS.gene49552:CDS |
| CTTGCTGATAGTCTTTGAGC+TGG | 0.522206 | 5.4:-28868130 | None:intergenic |
| AATACTATTGGTCCTGCTAT+GGG | 0.523343 | 5.4:+28865916 | MS.gene49552:CDS |
| CCCCATTGCTTTGTTGAAAG+GGG | 0.523889 | 5.4:-28869280 | None:intergenic |
| ATATGATTTACATGTTTGCA+TGG | 0.526096 | 5.4:+28869050 | MS.gene49552:CDS |
| ACGAAGCGATTTGGTAAAGA+TGG | 0.532019 | 5.4:+28865165 | MS.gene49552:CDS |
| GTATTGCTGCTGTGGTGCTG+TGG | 0.533005 | 5.4:+28869144 | MS.gene49552:CDS |
| TTTGCATGGCCAAGTGGTAG+TGG | 0.534136 | 5.4:+28869064 | MS.gene49552:CDS |
| ATCCCCTTTCAACAAAGCAA+TGG | 0.537351 | 5.4:+28869278 | MS.gene49552:CDS |
| CCAGATTCCGGCGACGCAGA+AGG | 0.547977 | 5.4:-28865007 | None:intergenic |
| CTCAAAGACTATCAGCAAGC+TGG | 0.553037 | 5.4:+28868134 | MS.gene49552:CDS |
| TATTGCTGCTGTGGTGCTGT+GGG | 0.554263 | 5.4:+28869145 | MS.gene49552:CDS |
| TTAATGGAAGCTCACGGCGG+AGG | 0.556627 | 5.4:+28864961 | None:intergenic |
| ACAACATCCAGAAGCAGCAT+GGG | 0.564204 | 5.4:+28869111 | MS.gene49552:CDS |
| TGTACCTTCCTTGTTGCTGG+AGG | 0.565023 | 5.4:+28867978 | MS.gene49552:CDS |
| AACAACATCCAGAAGCAGCA+TGG | 0.568553 | 5.4:+28869110 | MS.gene49552:CDS |
| CCCTTTCAACAAAGCAATGG+GGG | 0.570305 | 5.4:+28869281 | MS.gene49552:CDS |
| AGAAGGCGAGGACAAGGATG+CGG | 0.571349 | 5.4:-28864990 | None:intergenic |
| CCCAGGATTCCTTAAAAGCA+AGG | 0.572578 | 5.4:+28868229 | MS.gene49552:CDS |
| TTCCGGCGACGCAGAAGGCG+AGG | 0.572738 | 5.4:-28865002 | None:intergenic |
| TTGATACAGGGCTGTTCATG+TGG | 0.578370 | 5.4:-28869389 | None:intergenic |
| ATGTTAGGCATGAATTTATG+GGG | 0.578667 | 5.4:+28869016 | MS.gene49552:CDS |
| GTGTTTCCTGAAGAATGCCT+TGG | 0.578829 | 5.4:-28865044 | None:intergenic |
| TGGATTTACTAATGCAACCC+AGG | 0.581751 | 5.4:+28868212 | MS.gene49552:CDS |
| TGGTATCTTCACTATTGAGT+GGG | 0.586928 | 5.4:+28869254 | MS.gene49552:CDS |
| TGGGGTGGTGGAAATACTGG+TGG | 0.597101 | 5.4:+28865856 | MS.gene49552:CDS |
| AGGCGAGGACAAGGATGCGG+CGG | 0.600199 | 5.4:-28864987 | None:intergenic |
| CATACCAGATCTACCTCAAG+TGG | 0.602281 | 5.4:+28869332 | MS.gene49552:CDS |
| GCCTCATATCCACTACCACT+TGG | 0.602799 | 5.4:-28869073 | None:intergenic |
| TCTGCAACTTCTGCCACTTG+AGG | 0.603062 | 5.4:-28869345 | None:intergenic |
| AAATTTGCGAGTGGTAGTGA+TGG | 0.603630 | 5.4:-28869221 | None:intergenic |
| TAGTAAATCCATCAAAAGCA+AGG | 0.603971 | 5.4:-28868200 | None:intergenic |
| CTGCGTCGCCGGAATCTGGT+CGG | 0.615572 | 5.4:+28865011 | MS.gene49552:CDS |
| GTGGTATCTTCACTATTGAG+TGG | 0.618540 | 5.4:+28869253 | MS.gene49552:CDS |
| GGTACAAAGGTATTCTGGGA+TGG | 0.626831 | 5.4:-28867961 | None:intergenic |
| CAGCAACAAGGAAGGTACAA+AGG | 0.630883 | 5.4:-28867974 | None:intergenic |
| ATGAAACACCTCCAGCAACA+AGG | 0.652025 | 5.4:-28867986 | None:intergenic |
| AACACCTCCAGCAACAAGGA+AGG | 0.653676 | 5.4:-28867982 | None:intergenic |
| TACATGTTTGCATGGCCAAG+TGG | 0.656810 | 5.4:+28869058 | MS.gene49552:CDS |
| GATGCTTACAAATTTGCGAG+TGG | 0.674536 | 5.4:-28869230 | None:intergenic |
| CCCCTTTCAACAAAGCAATG+GGG | 0.674603 | 5.4:+28869280 | MS.gene49552:CDS |
| TGGTCGGCGTATATTTACCA+AGG | 0.679374 | 5.4:+28865027 | MS.gene49552:CDS |
| AAACATAGCCCATATCCAAG+AGG | 0.688551 | 5.4:-28868171 | None:intergenic |
| CTCGCTTTAATGGAAGCTCA+CGG | 0.709865 | 5.4:+28864955 | None:intergenic |
| TCGCAAATTTGTAAGCATCG+TGG | 0.735594 | 5.4:+28869234 | MS.gene49552:CDS |
| GCTTTAATGGAAGCTCACGG+CGG | 0.743316 | 5.4:+28864958 | None:intergenic |
| GCACTCCAATAAGACCACCA+AGG | 0.754915 | 5.4:-28865883 | None:intergenic |
| TGTGTAGTGATAAAGATCTG+GGG | 0.762885 | 5.4:+28865838 | MS.gene49552:intron |
| GTAGTGATAAAGATCTGGGG+TGG | 0.767595 | 5.4:+28865841 | MS.gene49552:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAGTATTAAGATTTG+AGG | + | chr5.4:28866933-28866952 | MS.gene49552:intron | 15.0% |
| !! | GTATAATAATTTGATACAAT+TGG | + | chr5.4:28867329-28867348 | MS.gene49552:intron | 15.0% |
| !!! | CATTAGTTATTTAGTTTTTT+GGG | + | chr5.4:28867729-28867748 | MS.gene49552:intron | 15.0% |
| !!! | GTGTAATTTTGATTTTTTTT+TGG | + | chr5.4:28865801-28865820 | MS.gene49552:intron | 15.0% |
| !!! | TTTTAACTTAAGCATTTATA+AGG | - | chr5.4:28866901-28866920 | None:intergenic | 15.0% |
| !! | AAAACATAAAAAGGAACAAT+TGG | - | chr5.4:28865638-28865657 | None:intergenic | 20.0% |
| !! | AACAATTAATCATGATTAGT+GGG | + | chr5.4:28866587-28866606 | MS.gene49552:intron | 20.0% |
| !! | AAGATAGAGAAAACATAAAA+AGG | - | chr5.4:28865647-28865666 | None:intergenic | 20.0% |
| !! | AGTTAATTAATGTGTAAAGT+TGG | + | chr5.4:28865779-28865798 | MS.gene49552:intron | 20.0% |
| !! | ATTGAATTGAAAAATTGTTG+TGG | + | chr5.4:28865089-28865108 | MS.gene49552:intron | 20.0% |
| !! | CATAACTTAACATGAAATTA+TGG | - | chr5.4:28868408-28868427 | None:intergenic | 20.0% |
| !! | CATGTAAATCATATTGTATA+TGG | - | chr5.4:28869044-28869063 | None:intergenic | 20.0% |
| !! | CTTTAGCATTTAAACAAAAT+TGG | + | chr5.4:28867535-28867554 | MS.gene49552:intron | 20.0% |
| !! | TAAGACACATAAAAATGATA+TGG | - | chr5.4:28867175-28867194 | None:intergenic | 20.0% |
| !! | TAGATAGTTAATTCAATTCA+CGG | + | chr5.4:28865435-28865454 | MS.gene49552:intron | 20.0% |
| !! | TGATATATTACATAGAATCA+AGG | + | chr5.4:28866185-28866204 | MS.gene49552:intron | 20.0% |
| !! | TGATTCTATGTAATATATCA+AGG | - | chr5.4:28866185-28866204 | None:intergenic | 20.0% |
| !!! | GCATTAGTTATTTAGTTTTT+TGG | + | chr5.4:28867728-28867747 | MS.gene49552:intron | 20.0% |
| !!! | GTTTAAAAATTTTAGGGTTT+TGG | - | chr5.4:28866725-28866744 | None:intergenic | 20.0% |
| !!! | TATTGAATTCTTTTGTGATT+TGG | + | chr5.4:28865131-28865150 | MS.gene49552:intron | 20.0% |
| !!! | TCTCAATTTTAATAATCCAA+CGG | + | chr5.4:28867504-28867523 | MS.gene49552:intron | 20.0% |
| !!! | TGTTTTAGAGAATTCTATAA+TGG | - | chr5.4:28867096-28867115 | None:intergenic | 20.0% |
| ! | AAAATGTTGAGATTTGAGAA+AGG | - | chr5.4:28868870-28868889 | None:intergenic | 25.0% |
| ! | AAATTCATCATCAGATTATG+TGG | + | chr5.4:28867858-28867877 | MS.gene49552:intron | 25.0% |
| ! | AACTTAAGCATTTATAAGGA+AGG | - | chr5.4:28866897-28866916 | None:intergenic | 25.0% |
| ! | AATTGTATAGTCGTAAACTA+TGG | + | chr5.4:28865994-28866013 | MS.gene49552:intron | 25.0% |
| ! | ACATTCAAACACAAATGAAA+CGG | - | chr5.4:28868845-28868864 | None:intergenic | 25.0% |
| ! | AGAAAATGAAATTCATCTAC+AGG | - | chr5.4:28867487-28867506 | None:intergenic | 25.0% |
| ! | AGTCATTAGAGCTAAAAAAT+TGG | + | chr5.4:28866083-28866102 | MS.gene49552:intron | 25.0% |
| ! | ATATGATTTACATGTTTGCA+TGG | + | chr5.4:28869050-28869069 | MS.gene49552:CDS | 25.0% |
| ! | CAACAATTAATCATGATTAG+TGG | + | chr5.4:28866586-28866605 | MS.gene49552:intron | 25.0% |
| ! | CATCCTAAATAAAGATTCAT+TGG | + | chr5.4:28868921-28868940 | MS.gene49552:intron | 25.0% |
| ! | GATCAGAAATTATTCAGATT+AGG | - | chr5.4:28868451-28868470 | None:intergenic | 25.0% |
| ! | GTATGGGATTATAATAAAAG+TGG | + | chr5.4:28866016-28866035 | MS.gene49552:intron | 25.0% |
| ! | TACTTGATAGATGAATTGAA+AGG | - | chr5.4:28868513-28868532 | None:intergenic | 25.0% |
| ! | TAGTCGTTAAATGTCTTTAT+TGG | + | chr5.4:28868562-28868581 | MS.gene49552:intron | 25.0% |
| ! | TATATATGTAATCCCAAGTT+TGG | - | chr5.4:28866447-28866466 | None:intergenic | 25.0% |
| ! | TATGTTAGGCATGAATTTAT+GGG | + | chr5.4:28869015-28869034 | MS.gene49552:CDS | 25.0% |
| ! | TCTTTAAATGGTTTCACTAT+TGG | + | chr5.4:28866977-28866996 | MS.gene49552:intron | 25.0% |
| ! | TTATATTCTTGACTATAAGC+CGG | + | chr5.4:28869176-28869195 | MS.gene49552:CDS | 25.0% |
| ! | TTATGTTAGGCATGAATTTA+TGG | + | chr5.4:28869014-28869033 | MS.gene49552:CDS | 25.0% |
| !! | AGACCAATGAATCTTTATTT+AGG | - | chr5.4:28868927-28868946 | None:intergenic | 25.0% |
| !! | ATTTTTAAACCGGATTAACT+AGG | + | chr5.4:28865462-28865481 | MS.gene49552:intron | 25.0% |
| !! | GTATTAAGATTTGAGGTAAA+AGG | + | chr5.4:28866940-28866959 | MS.gene49552:intron | 25.0% |
| !! | TCATTTTCTCTGATTGTTAT+TGG | + | chr5.4:28865723-28865742 | MS.gene49552:intron | 25.0% |
| !! | TCTCAAATCTCAACATTTTT+AGG | + | chr5.4:28868871-28868890 | MS.gene49552:intron | 25.0% |
| !!! | ATATAGTTTTTTCAGTTACC+AGG | + | chr5.4:28866679-28866698 | MS.gene49552:intron | 25.0% |
| !!! | ATTGTATTACCTTGCTTTTA+AGG | - | chr5.4:28868241-28868260 | None:intergenic | 25.0% |
| !!! | CCACTGGTTTAAAAATTTTA+GGG | - | chr5.4:28866731-28866750 | None:intergenic | 25.0% |
| !!! | TCCACTGGTTTAAAAATTTT+AGG | - | chr5.4:28866732-28866751 | None:intergenic | 25.0% |
| AAATGACATTTAACACGTGT+CGG | - | chr5.4:28865709-28865728 | None:intergenic | 30.0% | |
| ACAAGACCTATATAAAATCC+TGG | - | chr5.4:28866156-28866175 | None:intergenic | 30.0% | |
| AGCAAAAATCACAAATCACA+AGG | - | chr5.4:28868767-28868786 | None:intergenic | 30.0% | |
| ATAAAAATGATATGGCATGC+GGG | - | chr5.4:28867167-28867186 | None:intergenic | 30.0% | |
| ATAGTCGTAAACTATGGTAT+GGG | + | chr5.4:28866000-28866019 | MS.gene49552:intron | 30.0% | |
| ATGTGTAGTGATAAAGATCT+GGG | + | chr5.4:28865837-28865856 | MS.gene49552:intron | 30.0% | |
| ATGTTAGGCATGAATTTATG+GGG | + | chr5.4:28869016-28869035 | MS.gene49552:CDS | 30.0% | |
| ATGTTGTAAGTCTGTAGATT+AGG | - | chr5.4:28868628-28868647 | None:intergenic | 30.0% | |
| CAATTAAATCGCAGAAAGTT+GGG | + | chr5.4:28866639-28866658 | MS.gene49552:intron | 30.0% | |
| CATAAAAATGATATGGCATG+CGG | - | chr5.4:28867168-28867187 | None:intergenic | 30.0% | |
| CATACTTTAATCGTGATTAG+TGG | + | chr5.4:28866495-28866514 | MS.gene49552:intron | 30.0% | |
| CGTTAAATGTCTTTATTGGA+TGG | + | chr5.4:28868566-28868585 | MS.gene49552:intron | 30.0% | |
| GATGGAGATAAGTTCAATAT+TGG | + | chr5.4:28868584-28868603 | MS.gene49552:intron | 30.0% | |
| GCAAAAATCACAAATCACAA+GGG | - | chr5.4:28868766-28868785 | None:intergenic | 30.0% | |
| GCATCATGAATCATTGTATT+GGG | + | chr5.4:28866556-28866575 | MS.gene49552:intron | 30.0% | |
| GCTATATGCCAAAATCAAAA+GGG | - | chr5.4:28868276-28868295 | None:intergenic | 30.0% | |
| GCTGGAATTACTAATACTAT+TGG | + | chr5.4:28865904-28865923 | MS.gene49552:CDS | 30.0% | |
| TAAATTGTGAGATCGTAACA+TGG | + | chr5.4:28866387-28866406 | MS.gene49552:intron | 30.0% | |
| TACTCTTGTCTAAACTTACA+TGG | + | chr5.4:28868065-28868084 | MS.gene49552:intron | 30.0% | |
| TAGTAAATCCATCAAAAGCA+AGG | - | chr5.4:28868203-28868222 | None:intergenic | 30.0% | |
| TATAGTCGTAAACTATGGTA+TGG | + | chr5.4:28865999-28866018 | MS.gene49552:intron | 30.0% | |
| TATGTGTAGTGATAAAGATC+TGG | + | chr5.4:28865836-28865855 | MS.gene49552:intron | 30.0% | |
| TGCATCATGAATCATTGTAT+TGG | + | chr5.4:28866555-28866574 | MS.gene49552:intron | 30.0% | |
| TGCTATATGCCAAAATCAAA+AGG | - | chr5.4:28868277-28868296 | None:intergenic | 30.0% | |
| TGGTAGACAGTAATTATACA+TGG | - | chr5.4:28865618-28865637 | None:intergenic | 30.0% | |
| TGTTCAAATGTCTTTAGCAT+AGG | + | chr5.4:28867196-28867215 | MS.gene49552:intron | 30.0% | |
| TGTTGTAAGTCTGTAGATTA+GGG | - | chr5.4:28868627-28868646 | None:intergenic | 30.0% | |
| TTCAATGCAGTTATGTTGAT+GGG | + | chr5.4:28867912-28867931 | MS.gene49552:intron | 30.0% | |
| TTCATCATTTGCACTTCTAA+AGG | + | chr5.4:28868004-28868023 | MS.gene49552:CDS | 30.0% | |
| TTTATGACACTTCTAATCGA+AGG | - | chr5.4:28865374-28865393 | None:intergenic | 30.0% | |
| ! | AGACTTGCTTAACTCATTAT+CGG | - | chr5.4:28867061-28867080 | None:intergenic | 30.0% |
| ! | ATTCCTATACTTTGAGTTAC+AGG | + | chr5.4:28867447-28867466 | MS.gene49552:intron | 30.0% |
| ! | CCCTAAAATTTTTAAACCAG+TGG | + | chr5.4:28866728-28866747 | MS.gene49552:intron | 30.0% |
| ! | TAAGGACCAGGATTTTATAT+AGG | + | chr5.4:28866147-28866166 | MS.gene49552:intron | 30.0% |
| ! | TATAACATTTTACCTGAGCA+GGG | - | chr5.4:28865969-28865988 | None:intergenic | 30.0% |
| ! | TTAAGATTTGAGGTAAAAGG+TGG | + | chr5.4:28866943-28866962 | MS.gene49552:intron | 30.0% |
| ! | TTATAACATTTTACCTGAGC+AGG | - | chr5.4:28865970-28865989 | None:intergenic | 30.0% |
| ! | TTCCTATACTTTGAGTTACA+GGG | + | chr5.4:28867448-28867467 | MS.gene49552:intron | 30.0% |
| ! | TTTTACTCCTTTCTTCTTTG+TGG | + | chr5.4:28868366-28868385 | MS.gene49552:intron | 30.0% |
| !! | AGAACGTGGTTTGTTTAATT+TGG | + | chr5.4:28865226-28865245 | MS.gene49552:CDS | 30.0% |
| !! | TATAGTGCTTAAAGTTGATG+TGG | + | chr5.4:28867013-28867032 | MS.gene49552:intron | 30.0% |
| !! | TTAGCTCTAATGACTCAATA+AGG | - | chr5.4:28866078-28866097 | None:intergenic | 30.0% |
| !!! | AAATTTTAGGGTTTTGGTCT+CGG | - | chr5.4:28866719-28866738 | None:intergenic | 30.0% |
| !!! | AACAAAATTGGCTAGTTTTG+TGG | + | chr5.4:28867547-28867566 | MS.gene49552:intron | 30.0% |
| !!! | AGTTTTTTGGGTGTCTTAAA+TGG | + | chr5.4:28867741-28867760 | MS.gene49552:intron | 30.0% |
| !!! | TCTTTTGTGATTTGGTTTTC+AGG | + | chr5.4:28865139-28865158 | MS.gene49552:intron | 30.0% |
| !!! | TGTGGATTTTGAAATGTAAG+TGG | + | chr5.4:28865107-28865126 | MS.gene49552:intron | 30.0% |
| AAGTCCTCAAAAATGATTCC+AGG | + | chr5.4:28867271-28867290 | MS.gene49552:CDS | 35.0% | |
| AATACTATTGGTCCTGCTAT+GGG | + | chr5.4:28865916-28865935 | MS.gene49552:CDS | 35.0% | |
| AATGGTTTCACTATTGGAGT+AGG | + | chr5.4:28866983-28867002 | MS.gene49552:intron | 35.0% | |
| ACCATTCCTTATACAGGAAT+AGG | - | chr5.4:28866873-28866892 | None:intergenic | 35.0% | |
| ACTATTGCTTTGTCTTTCTC+AGG | + | chr5.4:28868966-28868985 | MS.gene49552:intron | 35.0% | |
| ACTTTAATCGTGATTAGTGG+AGG | + | chr5.4:28866498-28866517 | MS.gene49552:intron | 35.0% | |
| ATAGAATCAAGGTCAAATGC+GGG | + | chr5.4:28866196-28866215 | MS.gene49552:intron | 35.0% | |
| ATATGCCAAAATCAAAAGGG+AGG | - | chr5.4:28868273-28868292 | None:intergenic | 35.0% | |
| ATCAATGTTGAAACCAAGCA+AGG | - | chr5.4:28866110-28866129 | None:intergenic | 35.0% | |
| ATCCATAATAGACAGTCCTA+AGG | - | chr5.4:28868690-28868709 | None:intergenic | 35.0% | |
| ATCTACAGACTTACAACATC+AGG | + | chr5.4:28868629-28868648 | MS.gene49552:intron | 35.0% | |
| CAAGATAACATTCACCCAAA+AGG | - | chr5.4:28867606-28867625 | None:intergenic | 35.0% | |
| CATAGAATCAAGGTCAAATG+CGG | + | chr5.4:28866195-28866214 | MS.gene49552:intron | 35.0% | |
| CATGAATCATTGTATTGGGA+AGG | + | chr5.4:28866560-28866579 | MS.gene49552:intron | 35.0% | |
| CATGATTAGTGGGAATAGAA+AGG | + | chr5.4:28866597-28866616 | MS.gene49552:intron | 35.0% | |
| CTAAAAAATTGGTCCTTGCT+TGG | + | chr5.4:28866094-28866113 | MS.gene49552:intron | 35.0% | |
| CTTCAATGCAGTTATGTTGA+TGG | + | chr5.4:28867911-28867930 | MS.gene49552:intron | 35.0% | |
| CTTTCCTTTCTCTCAACATT+CGG | + | chr5.4:28867688-28867707 | MS.gene49552:intron | 35.0% | |
| GAAGAAAGGAGTAAAAAACG+AGG | - | chr5.4:28868362-28868381 | None:intergenic | 35.0% | |
| GAAGTCGTTGAGTCTTTAAA+TGG | + | chr5.4:28866965-28866984 | MS.gene49552:intron | 35.0% | |
| GAATGTTGAGAGAAAGGAAA+GGG | - | chr5.4:28867689-28867708 | None:intergenic | 35.0% | |
| GCAAATTCATACAACAAGTC+AGG | - | chr5.4:28866538-28866557 | None:intergenic | 35.0% | |
| GCAATTAAATCGCAGAAAGT+TGG | + | chr5.4:28866638-28866657 | MS.gene49552:intron | 35.0% | |
| GTGGAGCTATATTTAAACCT+CGG | + | chr5.4:28866306-28866325 | MS.gene49552:intron | 35.0% | |
| GTTAATCGCGTGCAAAAATA+TGG | + | chr5.4:28865398-28865417 | MS.gene49552:intron | 35.0% | |
| TAAAAATGATATGGCATGCG+GGG | - | chr5.4:28867166-28867185 | None:intergenic | 35.0% | |
| TAATACTATTGGTCCTGCTA+TGG | + | chr5.4:28865915-28865934 | MS.gene49552:CDS | 35.0% | |
| TATTTAAACCTCGGTAAGCA+AGG | + | chr5.4:28866315-28866334 | MS.gene49552:intron | 35.0% | |
| TCAACATAACTGCATTGAAG+TGG | - | chr5.4:28867911-28867930 | None:intergenic | 35.0% | |
| TCTCACAATTTACGATCTTG+TGG | - | chr5.4:28866379-28866398 | None:intergenic | 35.0% | |
| TGAGTTAAGCAAGTCTATCA+TGG | + | chr5.4:28867065-28867084 | MS.gene49552:intron | 35.0% | |
| TGGTATCTTCACTATTGAGT+GGG | + | chr5.4:28869254-28869273 | MS.gene49552:CDS | 35.0% | |
| TGTGTAGTGATAAAGATCTG+GGG | + | chr5.4:28865838-28865857 | MS.gene49552:intron | 35.0% | |
| TTAAACCAGTGGAATCTATG+AGG | + | chr5.4:28866739-28866758 | MS.gene49552:intron | 35.0% | |
| TTGCTTAACTCATTATCGGT+GGG | - | chr5.4:28867057-28867076 | None:intergenic | 35.0% | |
| TTTCATGCCACAAAGAAGAA+AGG | - | chr5.4:28868376-28868395 | None:intergenic | 35.0% | |
| TTTCCTTTCTCTCAACATTC+GGG | + | chr5.4:28867689-28867708 | MS.gene49552:intron | 35.0% | |
| ! | ATTTTACTGTATTGCTGCTG+TGG | + | chr5.4:28869136-28869155 | MS.gene49552:CDS | 35.0% |
| ! | GTGTTCTTTTTACTACATGC+AGG | + | chr5.4:28867240-28867259 | MS.gene49552:intron | 35.0% |
| ! | TATTTACCAAGGCATTCTTC+AGG | + | chr5.4:28865038-28865057 | MS.gene49552:CDS | 35.0% |
| ! | TCACGGTCACATTTTTAAAC+CGG | + | chr5.4:28865452-28865471 | MS.gene49552:intron | 35.0% |
| ! | TCCTATACTTTGAGTTACAG+GGG | + | chr5.4:28867449-28867468 | MS.gene49552:intron | 35.0% |
| ! | TCTGTAGTTCTTGTCCTTTT+GGG | + | chr5.4:28867589-28867608 | MS.gene49552:intron | 35.0% |
| ! | TGTGTTACTATGGTATTCTC+TGG | + | chr5.4:28869304-28869323 | MS.gene49552:CDS | 35.0% |
| ! | TTCTGTAGTTCTTGTCCTTT+TGG | + | chr5.4:28867588-28867607 | MS.gene49552:intron | 35.0% |
| !! | ATACAATTGGCAATTTGCTG+AGG | + | chr5.4:28867342-28867361 | MS.gene49552:intron | 35.0% |
| !! | GACTGTGAGGTTTTCTAAAA+GGG | + | chr5.4:28867218-28867237 | MS.gene49552:intron | 35.0% |
| !! | TGTACCTGGAATCATTTTTG+AGG | - | chr5.4:28867278-28867297 | None:intergenic | 35.0% |
| !! | TTAAAGTTGATGTGGCTATG+TGG | + | chr5.4:28867021-28867040 | MS.gene49552:intron | 35.0% |
| !! | TTCTTGAACCTTGCTTTTGA+TGG | + | chr5.4:28868192-28868211 | MS.gene49552:CDS | 35.0% |
| !!! | AATTTTAGGGTTTTGGTCTC+GGG | - | chr5.4:28866718-28866737 | None:intergenic | 35.0% |
| !!! | GATTTCCTCCCTTTTGATTT+TGG | + | chr5.4:28868265-28868284 | MS.gene49552:intron | 35.0% |
| !!! | TTTTCATATTAGCACCGACA+CGG | + | chr5.4:28865269-28865288 | MS.gene49552:intron | 35.0% |
| !!! | TTTTTGGGTGTCTTAAATGG+AGG | + | chr5.4:28867744-28867763 | MS.gene49552:intron | 35.0% |
| AAACATAGCCCATATCCAAG+AGG | - | chr5.4:28868174-28868193 | None:intergenic | 40.0% | |
| AAAGCTTCAATTCCCATAGC+AGG | - | chr5.4:28865931-28865950 | None:intergenic | 40.0% | |
| AACATCAGGCTTACTCAGTA+AGG | + | chr5.4:28868643-28868662 | MS.gene49552:intron | 40.0% | |
| ACAATCCTCATAGATTCCAC+TGG | - | chr5.4:28866747-28866766 | None:intergenic | 40.0% | |
| AGTGCAACACCTAGTTAATC+CGG | - | chr5.4:28865474-28865493 | None:intergenic | 40.0% | |
| ATCACAAATCACAAGGGAGA+CGG | - | chr5.4:28868760-28868779 | None:intergenic | 40.0% | |
| ATCCCCTTTCAACAAAGCAA+TGG | + | chr5.4:28869278-28869297 | MS.gene49552:CDS | 40.0% | |
| CAAATGCTCCTCTTGGATAT+GGG | + | chr5.4:28868163-28868182 | MS.gene49552:CDS | 40.0% | |
| CGAATGTTGAGAGAAAGGAA+AGG | - | chr5.4:28867690-28867709 | None:intergenic | 40.0% | |
| CTAAAGGTCAGGAAATTCTC+AGG | + | chr5.4:28868020-28868039 | MS.gene49552:intron | 40.0% | |
| CTTGCTTAACTCATTATCGG+TGG | - | chr5.4:28867058-28867077 | None:intergenic | 40.0% | |
| GAAGGAACCATTCCTTATAC+AGG | - | chr5.4:28866879-28866898 | None:intergenic | 40.0% | |
| GATGCTTACAAATTTGCGAG+TGG | - | chr5.4:28869233-28869252 | None:intergenic | 40.0% | |
| GCCTATTCCTGTATAAGGAA+TGG | + | chr5.4:28866869-28866888 | MS.gene49552:intron | 40.0% | |
| GTAAGGCCTATTCCTGTATA+AGG | + | chr5.4:28866864-28866883 | MS.gene49552:intron | 40.0% | |
| GTACCCAAAAACAAGTGCTT+GGG | + | chr5.4:28868988-28869007 | MS.gene49552:CDS | 40.0% | |
| GTATATTAGTTACCCTGCTC+AGG | + | chr5.4:28865954-28865973 | MS.gene49552:CDS | 40.0% | |
| GTCCTTAGGACTGTCTATTA+TGG | + | chr5.4:28868685-28868704 | MS.gene49552:intron | 40.0% | |
| GTCTACATCCTAAACAGGAT+CGG | + | chr5.4:28866346-28866365 | MS.gene49552:intron | 40.0% | |
| GTCTTAAATGGAGGAGCTTA+TGG | + | chr5.4:28867753-28867772 | MS.gene49552:intron | 40.0% | |
| GTGGTATCTTCACTATTGAG+TGG | + | chr5.4:28869253-28869272 | MS.gene49552:CDS | 40.0% | |
| TAACGAAATGCATCTCTAGC+AGG | + | chr5.4:28866048-28866067 | MS.gene49552:intron | 40.0% | |
| TAAGATCTTGCAAGGTGAGA+TGG | - | chr5.4:28866796-28866815 | None:intergenic | 40.0% | |
| TACCCAAAAACAAGTGCTTG+GGG | + | chr5.4:28868989-28869008 | MS.gene49552:CDS | 40.0% | |
| TCCCCTGTAACTCAAAGTAT+AGG | - | chr5.4:28867453-28867472 | None:intergenic | 40.0% | |
| TCCCCTTTCAACAAAGCAAT+GGG | + | chr5.4:28869279-28869298 | MS.gene49552:CDS | 40.0% | |
| TCTACATCCTAAACAGGATC+GGG | + | chr5.4:28866347-28866366 | MS.gene49552:intron | 40.0% | |
| TCTTAAAGTCGTGAGATCGT+AGG | + | chr5.4:28866811-28866830 | MS.gene49552:intron | 40.0% | |
| TGACATGTGAGTACAACAAC+AGG | - | chr5.4:28868809-28868828 | None:intergenic | 40.0% | |
| TGCTAAAGTTCTACTTCCGT+TGG | - | chr5.4:28867523-28867542 | None:intergenic | 40.0% | |
| TGGATTTACTAATGCAACCC+AGG | + | chr5.4:28868212-28868231 | MS.gene49552:CDS | 40.0% | |
| TGTTAGCTAAAGAGCCAAAC+CGG | - | chr5.4:28869198-28869217 | None:intergenic | 40.0% | |
| TGTTGATACCGTCACATGTA+AGG | + | chr5.4:28866129-28866148 | MS.gene49552:intron | 40.0% | |
| TTAGGCTTCGTTGTGACAAA+TGG | + | chr5.4:28868889-28868908 | MS.gene49552:intron | 40.0% | |
| TTCTTGACTATAAGCCGGTT+TGG | + | chr5.4:28869181-28869200 | MS.gene49552:CDS | 40.0% | |
| ! | AAAATATCCCATGCTGCTTC+TGG | - | chr5.4:28869121-28869140 | None:intergenic | 40.0% |
| ! | AAATTTGCGAGTGGTAGTGA+TGG | - | chr5.4:28869224-28869243 | None:intergenic | 40.0% |
| ! | AAGCACGTGAGCATAAGTTT+TGG | - | chr5.4:28868330-28868349 | None:intergenic | 40.0% |
| ! | ACTTTGAGTTACAGGGGATT+TGG | + | chr5.4:28867455-28867474 | MS.gene49552:intron | 40.0% |
| ! | AGTGCTTGGGGTATTATGTT+AGG | + | chr5.4:28869001-28869020 | MS.gene49552:CDS | 40.0% |
| ! | CATTTGCACTTCTAAAGGTC+AGG | + | chr5.4:28868009-28868028 | MS.gene49552:intron | 40.0% |
| ! | CTTTGAGTTACAGGGGATTT+GGG | + | chr5.4:28867456-28867475 | MS.gene49552:intron | 40.0% |
| ! | GATTAACTAGGTGTTGCACT+TGG | + | chr5.4:28865474-28865493 | MS.gene49552:intron | 40.0% |
| ! | GCATCTTGCGTTTTTGAACT+TGG | + | chr5.4:28865200-28865219 | MS.gene49552:CDS | 40.0% |
| ! | GGACTGTGAGGTTTTCTAAA+AGG | + | chr5.4:28867217-28867236 | MS.gene49552:intron | 40.0% |
| ! | TCGCAAATTTGTAAGCATCG+TGG | + | chr5.4:28869234-28869253 | MS.gene49552:CDS | 40.0% |
| ! | TTTGAGTTACAGGGGATTTG+GGG | + | chr5.4:28867457-28867476 | MS.gene49552:intron | 40.0% |
| ! | TTTTTACTACATGCAGGTGC+TGG | + | chr5.4:28867246-28867265 | MS.gene49552:intron | 40.0% |
| !! | ACCTTGCTTTTAAGGAATCC+TGG | - | chr5.4:28868233-28868252 | None:intergenic | 40.0% |
| !! | ACGAAGCGATTTGGTAAAGA+TGG | + | chr5.4:28865165-28865184 | MS.gene49552:CDS | 40.0% |
| !! | AGGAAGGTACAAAGGTATTC+TGG | - | chr5.4:28867969-28867988 | None:intergenic | 40.0% |
| !! | ATACCCCAAGCACTTGTTTT+TGG | - | chr5.4:28868995-28869014 | None:intergenic | 40.0% |
| !! | CACGACTTTAAGATCTTGCA+AGG | - | chr5.4:28866804-28866823 | None:intergenic | 40.0% |
| !! | CCTTGCTTTTAAGGAATCCT+GGG | - | chr5.4:28868232-28868251 | None:intergenic | 40.0% |
| !! | GGAAGGTACAAAGGTATTCT+GGG | - | chr5.4:28867968-28867987 | None:intergenic | 40.0% |
| !! | TACCCCAAGCACTTGTTTTT+GGG | - | chr5.4:28868994-28869013 | None:intergenic | 40.0% |
| !! | TTGATGGGTTCACTCGTATA+CGG | + | chr5.4:28867927-28867946 | MS.gene49552:CDS | 40.0% |
| !! | TTTAGACAAGAGTACCAGAC+AGG | - | chr5.4:28868059-28868078 | None:intergenic | 40.0% |
| AACAACATCCAGAAGCAGCA+TGG | + | chr5.4:28869110-28869129 | MS.gene49552:CDS | 45.0% | |
| AATATACGCCGACCAGATTC+CGG | - | chr5.4:28865022-28865041 | None:intergenic | 45.0% | |
| AATCGTGATTAGTGGAGGAG+TGG | + | chr5.4:28866503-28866522 | MS.gene49552:intron | 45.0% | |
| ACAACATCCAGAAGCAGCAT+GGG | + | chr5.4:28869111-28869130 | MS.gene49552:CDS | 45.0% | |
| AGCATCAAGCACAATGTACC+TGG | - | chr5.4:28867292-28867311 | None:intergenic | 45.0% | |
| ATCACAGTCGCTTGTGGTTT+AGG | + | chr5.4:28866239-28866258 | MS.gene49552:intron | 45.0% | |
| ATCCTGGTCCTTACATGTGA+CGG | - | chr5.4:28866140-28866159 | None:intergenic | 45.0% | |
| ATCGTGATTAGTGGAGGAGT+GGG | + | chr5.4:28866504-28866523 | MS.gene49552:intron | 45.0% | |
| ATGAAACACCTCCAGCAACA+AGG | - | chr5.4:28867989-28868008 | None:intergenic | 45.0% | |
| CATACCAGATCTACCTCAAG+TGG | + | chr5.4:28869332-28869351 | MS.gene49552:CDS | 45.0% | |
| CATTATCGGTGGGACTTAGT+GGG | - | chr5.4:28867047-28867066 | None:intergenic | 45.0% | |
| CCAAATGCTCCTCTTGGATA+TGG | + | chr5.4:28868162-28868181 | MS.gene49552:CDS | 45.0% | |
| CCCAGGATTCCTTAAAAGCA+AGG | + | chr5.4:28868229-28868248 | MS.gene49552:CDS | 45.0% | |
| CCCCTTTCAACAAAGCAATG+GGG | + | chr5.4:28869280-28869299 | MS.gene49552:CDS | 45.0% | |
| CCCTTTCAACAAAGCAATGG+GGG | + | chr5.4:28869281-28869300 | MS.gene49552:CDS | 45.0% | |
| CGTGAGATCGTACCAAACTT+GGG | + | chr5.4:28866432-28866451 | MS.gene49552:intron | 45.0% | |
| CTACATCCTAAACAGGATCG+GGG | + | chr5.4:28866348-28866367 | MS.gene49552:intron | 45.0% | |
| CTACCCGAATGTTGAGAGAA+AGG | - | chr5.4:28867695-28867714 | None:intergenic | 45.0% | |
| CTCAAAGACTATCAGCAAGC+TGG | + | chr5.4:28868134-28868153 | MS.gene49552:CDS | 45.0% | |
| CTTGCTGATAGTCTTTGAGC+TGG | - | chr5.4:28868133-28868152 | None:intergenic | 45.0% | |
| CTTTCTCTCAACATTCGGGT+AGG | + | chr5.4:28867693-28867712 | MS.gene49552:intron | 45.0% | |
| CTTTGTACCTTCCTTGTTGC+TGG | + | chr5.4:28867975-28867994 | MS.gene49552:CDS | 45.0% | |
| GGCTGATGAAATTGGTCCTT+AGG | + | chr5.4:28868671-28868690 | MS.gene49552:intron | 45.0% | |
| GGTACCCAAAAACAAGTGCT+TGG | + | chr5.4:28868987-28869006 | MS.gene49552:intron | 45.0% | |
| GTAGTGATAAAGATCTGGGG+TGG | + | chr5.4:28865841-28865860 | MS.gene49552:intron | 45.0% | |
| GTCTTTAGCATAGGACTGTG+AGG | + | chr5.4:28867205-28867224 | MS.gene49552:intron | 45.0% | |
| GTGTTTCCTGAAGAATGCCT+TGG | - | chr5.4:28865047-28865066 | None:intergenic | 45.0% | |
| TAAATGGAGGAGCTTATGGC+TGG | + | chr5.4:28867757-28867776 | MS.gene49552:intron | 45.0% | |
| TACATGTTTGCATGGCCAAG+TGG | + | chr5.4:28869058-28869077 | MS.gene49552:CDS | 45.0% | |
| TCATTATCGGTGGGACTTAG+TGG | - | chr5.4:28867048-28867067 | None:intergenic | 45.0% | |
| TCGGAGTCTACATCCTAAAC+AGG | + | chr5.4:28866341-28866360 | MS.gene49552:intron | 45.0% | |
| TCGTGAGATCGTACCAAACT+TGG | + | chr5.4:28866431-28866450 | MS.gene49552:intron | 45.0% | |
| TCTTGACTACCATGCTGGTA+AGG | + | chr5.4:28866847-28866866 | MS.gene49552:intron | 45.0% | |
| TGGATCGTGAGATCGTAACA+TGG | + | chr5.4:28866407-28866426 | MS.gene49552:intron | 45.0% | |
| TGGTCGGCGTATATTTACCA+AGG | + | chr5.4:28865027-28865046 | MS.gene49552:CDS | 45.0% | |
| TTCAGGTCAACGAAGCGATT+TGG | + | chr5.4:28865156-28865175 | MS.gene49552:intron | 45.0% | |
| TTGACGTGTCAGTGTCTTGT+TGG | + | chr5.4:28865748-28865767 | MS.gene49552:intron | 45.0% | |
| TTGATTAACCACGTGTCACG+CGG | + | chr5.4:28865573-28865592 | MS.gene49552:intron | 45.0% | |
| TTTCTCACAGTGCGTATCCT+GGG | + | chr5.4:28866275-28866294 | MS.gene49552:intron | 45.0% | |
| ! | ACCCCCATTGCTTTGTTGAA+AGG | - | chr5.4:28869285-28869304 | None:intergenic | 45.0% |
| ! | AGGTTGCTGGCTGATGAAAT+TGG | + | chr5.4:28868663-28868682 | MS.gene49552:intron | 45.0% |
| ! | CAGCAACAAGGAAGGTACAA+AGG | - | chr5.4:28867977-28867996 | None:intergenic | 45.0% |
| ! | CCCCATTGCTTTGTTGAAAG+GGG | - | chr5.4:28869283-28869302 | None:intergenic | 45.0% |
| ! | CCCCCATTGCTTTGTTGAAA+GGG | - | chr5.4:28869284-28869303 | None:intergenic | 45.0% |
| ! | TCAAAGTGTCAATGCCGTGT+CGG | - | chr5.4:28865286-28865305 | None:intergenic | 45.0% |
| ! | TTTTCTCACAGTGCGTATCC+TGG | + | chr5.4:28866274-28866293 | MS.gene49552:intron | 45.0% |
| !! | CCATATCCAAGAGGAGCATT+TGG | - | chr5.4:28868165-28868184 | None:intergenic | 45.0% |
| !! | GGTACAAAGGTATTCTGGGA+TGG | - | chr5.4:28867964-28867983 | None:intergenic | 45.0% |
| AACACCTCCAGCAACAAGGA+AGG | - | chr5.4:28867985-28868004 | None:intergenic | 50.0% | |
| ACCTCGGTAAGCAAGGTAGT+CGG | + | chr5.4:28866322-28866341 | MS.gene49552:intron | 50.0% | |
| AGGAATAGGCCTTACCAGCA+TGG | - | chr5.4:28866859-28866878 | None:intergenic | 50.0% | |
| ATCCTAAACAGGATCGGGGA+AGG | + | chr5.4:28866352-28866371 | MS.gene49552:intron | 50.0% | |
| ATCTTGCAAGGTGAGATGGC+TGG | - | chr5.4:28866792-28866811 | None:intergenic | 50.0% | |
| GATAACAGACCTCACCTGTC+TGG | + | chr5.4:28868042-28868061 | MS.gene49552:intron | 50.0% | |
| GCACATCCAAATGCTCCTCT+TGG | + | chr5.4:28868156-28868175 | MS.gene49552:CDS | 50.0% | |
| GCACTCCAATAAGACCACCA+AGG | - | chr5.4:28865886-28865905 | None:intergenic | 50.0% | |
| GCCTCATATCCACTACCACT+TGG | - | chr5.4:28869076-28869095 | None:intergenic | 50.0% | |
| GGCTTACTCAGTAAGGTTGC+TGG | + | chr5.4:28868650-28868669 | MS.gene49552:intron | 50.0% | |
| GTCTGTCACACAATGTGTGC+AGG | + | chr5.4:28867123-28867142 | MS.gene49552:intron | 50.0% | |
| TACCGTCACATGTAAGGACC+AGG | + | chr5.4:28866135-28866154 | MS.gene49552:intron | 50.0% | |
| TCGTCAATCACAGTCGCTTG+TGG | + | chr5.4:28866233-28866252 | MS.gene49552:intron | 50.0% | |
| TGATTAACCACGTGTCACGC+GGG | + | chr5.4:28865574-28865593 | MS.gene49552:intron | 50.0% | |
| TGTACCTTCCTTGTTGCTGG+AGG | + | chr5.4:28867978-28867997 | MS.gene49552:CDS | 50.0% | |
| TTTGAACTTGGCGCAGAACG+TGG | + | chr5.4:28865212-28865231 | MS.gene49552:CDS | 50.0% | |
| TTTGCATGGCCAAGTGGTAG+TGG | + | chr5.4:28869064-28869083 | MS.gene49552:CDS | 50.0% | |
| ! | GAAATACTGGTGGTGCTCCT+TGG | + | chr5.4:28865866-28865885 | MS.gene49552:CDS | 50.0% |
| ! | GCAATGGGGGTGTGTTACTA+TGG | + | chr5.4:28869294-28869313 | MS.gene49552:CDS | 50.0% |
| ! | GTGATAAAGATCTGGGGTGG+TGG | + | chr5.4:28865844-28865863 | MS.gene49552:intron | 50.0% |
| ! | TCTGCAACTTCTGCCACTTG+AGG | - | chr5.4:28869348-28869367 | None:intergenic | 50.0% |
| ! | TCTGCCACTTGAGGTAGATC+TGG | - | chr5.4:28869339-28869358 | None:intergenic | 50.0% |
| !! | ACAAGAGTACCAGACAGGTG+AGG | - | chr5.4:28868054-28868073 | None:intergenic | 50.0% |
| !! | ATCTGGGGTGGTGGAAATAC+TGG | + | chr5.4:28865853-28865872 | MS.gene49552:CDS | 50.0% |
| !! | GCCAAGTGGTAGTGGATATG+AGG | + | chr5.4:28869072-28869091 | MS.gene49552:CDS | 50.0% |
| !! | GTGCTCCTTGGTGGTCTTAT+TGG | + | chr5.4:28865878-28865897 | MS.gene49552:CDS | 50.0% |
| !! | TATTGCTGCTGTGGTGCTGT+GGG | + | chr5.4:28869145-28869164 | MS.gene49552:CDS | 50.0% |
| !! | TGAGATCGTAGGTGCTGGAT+CGG | + | chr5.4:28866822-28866841 | MS.gene49552:intron | 50.0% |
| !! | TGGTGGTCTTATTGGAGTGC+TGG | + | chr5.4:28865886-28865905 | MS.gene49552:CDS | 50.0% |
| AGAAGGCGAGGACAAGGATG+CGG | - | chr5.4:28864993-28865012 | None:intergenic | 55.0% | |
| AGATGGCTGGATTCGCAGGT+GGG | - | chr5.4:28866779-28866798 | None:intergenic | 55.0% | |
| AGTCGTGAGATCGTAGGTGC+TGG | + | chr5.4:28866817-28866836 | MS.gene49552:intron | 55.0% | |
| CGGGATCTTGACTACCATGC+TGG | + | chr5.4:28866842-28866861 | MS.gene49552:intron | 55.0% | |
| GACCTTCCCCGATCCTGTTT+AGG | - | chr5.4:28866357-28866376 | None:intergenic | 55.0% | |
| TCCGACTACCTTGCTTACCG+AGG | - | chr5.4:28866326-28866345 | None:intergenic | 55.0% | |
| ! | ATACTGGTGGTGCTCCTTGG+TGG | + | chr5.4:28865869-28865888 | MS.gene49552:CDS | 55.0% |
| ! | CTTCTAATCGAAGGCGCGTC+AGG | - | chr5.4:28865365-28865384 | None:intergenic | 55.0% |
| ! | GTATTGCTGCTGTGGTGCTG+TGG | + | chr5.4:28869144-28869163 | MS.gene49552:CDS | 55.0% |
| !! | GAGATCGTAGGTGCTGGATC+GGG | + | chr5.4:28866823-28866842 | MS.gene49552:intron | 55.0% |
| !! | TGGGGTGGTGGAAATACTGG+TGG | + | chr5.4:28865856-28865875 | MS.gene49552:CDS | 55.0% |
| !! | TTAGGGTTTTGGTCTCGGGC+CGG | - | chr5.4:28866714-28866733 | None:intergenic | 55.0% |
| CACAGTGCGTATCCTGGGTG+TGG | + | chr5.4:28866280-28866299 | MS.gene49552:intron | 60.0% | |
| CACGCGGGTGTGCAGAATGT+GGG | + | chr5.4:28865589-28865608 | MS.gene49552:intron | 60.0% | |
| CGTATCCTGGGTGTGGAGTG+TGG | + | chr5.4:28866287-28866306 | MS.gene49552:intron | 60.0% | |
| GAGATGGCTGGATTCGCAGG+TGG | - | chr5.4:28866780-28866799 | None:intergenic | 60.0% | |
| GGTGAGATGGCTGGATTCGC+AGG | - | chr5.4:28866783-28866802 | None:intergenic | 60.0% | |
| TAGCTCCACACTCCACACCC+AGG | - | chr5.4:28866295-28866314 | None:intergenic | 60.0% | |
| TCACGCGGGTGTGCAGAATG+TGG | + | chr5.4:28865588-28865607 | MS.gene49552:intron | 60.0% | |
| !! | TAGGGTTTTGGTCTCGGGCC+GGG | - | chr5.4:28866713-28866732 | None:intergenic | 60.0% |
| AGGCGAGGACAAGGATGCGG+CGG | - | chr5.4:28864990-28865009 | None:intergenic | 65.0% | |
| AGTTACCAGGCCGCACGACC+CGG | + | chr5.4:28866692-28866711 | MS.gene49552:intron | 65.0% | |
| CCAGATTCCGGCGACGCAGA+AGG | - | chr5.4:28865010-28865029 | None:intergenic | 65.0% | |
| CCTTCTGCGTCGCCGGAATC+TGG | + | chr5.4:28865007-28865026 | MS.gene49552:CDS | 65.0% | |
| CGACGCAGAAGGCGAGGACA+AGG | - | chr5.4:28864999-28865018 | None:intergenic | 65.0% | |
| CTGCGTCGCCGGAATCTGGT+CGG | + | chr5.4:28865011-28865030 | MS.gene49552:CDS | 65.0% | |
| CTGCACACCCGCGTGACACG+TGG | - | chr5.4:28865584-28865603 | None:intergenic | 70.0% | |
| GTCCTCGCCTTCTGCGTCGC+CGG | + | chr5.4:28865000-28865019 | MS.gene49552:CDS | 70.0% | |
| TTCCGGCGACGCAGAAGGCG+AGG | - | chr5.4:28865005-28865024 | None:intergenic | 70.0% | |
| TGGTCTCGGGCCGGGTCGTG+CGG | - | chr5.4:28866705-28866724 | None:intergenic | 75.0% | |
| ! | TCGGGCCGGGTCGTGCGGCC+TGG | - | chr5.4:28866700-28866719 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 28864964 | 28869396 | 28864964 | ID=MS.gene49552 |
| chr5.4 | mRNA | 28864964 | 28869396 | 28864964 | ID=MS.gene49552.t1;Parent=MS.gene49552 |
| chr5.4 | exon | 28864964 | 28865067 | 28864964 | ID=MS.gene49552.t1.exon1;Parent=MS.gene49552.t1 |
| chr5.4 | CDS | 28864964 | 28865067 | 28864964 | ID=cds.MS.gene49552.t1;Parent=MS.gene49552.t1 |
| chr5.4 | exon | 28865161 | 28865258 | 28865161 | ID=MS.gene49552.t1.exon2;Parent=MS.gene49552.t1 |
| chr5.4 | CDS | 28865161 | 28865258 | 28865161 | ID=cds.MS.gene49552.t1;Parent=MS.gene49552.t1 |
| chr5.4 | exon | 28865845 | 28865975 | 28865845 | ID=MS.gene49552.t1.exon3;Parent=MS.gene49552.t1 |
| chr5.4 | CDS | 28865845 | 28865975 | 28865845 | ID=cds.MS.gene49552.t1;Parent=MS.gene49552.t1 |
| chr5.4 | exon | 28867262 | 28867292 | 28867262 | ID=MS.gene49552.t1.exon4;Parent=MS.gene49552.t1 |
| chr5.4 | CDS | 28867262 | 28867292 | 28867262 | ID=cds.MS.gene49552.t1;Parent=MS.gene49552.t1 |
| chr5.4 | exon | 28867922 | 28868025 | 28867922 | ID=MS.gene49552.t1.exon5;Parent=MS.gene49552.t1 |
| chr5.4 | CDS | 28867922 | 28868025 | 28867922 | ID=cds.MS.gene49552.t1;Parent=MS.gene49552.t1 |
| chr5.4 | exon | 28868129 | 28868250 | 28868129 | ID=MS.gene49552.t1.exon6;Parent=MS.gene49552.t1 |
| chr5.4 | CDS | 28868129 | 28868250 | 28868129 | ID=cds.MS.gene49552.t1;Parent=MS.gene49552.t1 |
| chr5.4 | exon | 28868988 | 28869396 | 28868988 | ID=MS.gene49552.t1.exon7;Parent=MS.gene49552.t1 |
| chr5.4 | CDS | 28868988 | 28869396 | 28868988 | ID=cds.MS.gene49552.t1;Parent=MS.gene49552.t1 |
| Gene Sequence |
| Protein sequence |
