AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49711

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49711.t1 MTR_8g094590 99.024 410 4 0 4 413 26 435 0.0 844
MS.gene49711.t1 MTR_8g094590 99.198 374 3 0 4 377 26 399 0.0 770
MS.gene49711.t1 MTR_3g096930 73.775 408 100 2 12 413 39 445 0.0 629
MS.gene49711.t1 MTR_8g094590 98.246 285 5 0 4 288 26 310 0.0 583
MS.gene49711.t1 MTR_1g029810 53.543 381 170 5 31 407 37 414 2.89e-141 409
MS.gene49711.t1 MTR_1g029810 53.368 386 172 6 31 411 37 419 1.40e-140 409
MS.gene49711.t1 MTR_4g023650 49.620 395 186 7 24 408 34 425 1.10e-127 375
MS.gene49711.t1 MTR_4g023630 49.618 393 185 8 24 406 34 423 9.90e-126 370
MS.gene49711.t1 MTR_6g084710 42.787 409 216 10 7 402 147 550 3.31e-97 301
MS.gene49711.t1 MTR_6g084710 42.500 360 189 10 7 353 147 501 1.24e-81 259
MS.gene49711.t1 MTR_3g006820 38.560 389 210 15 36 409 45 419 6.77e-81 255
MS.gene49711.t1 MTR_1g061940 23.697 422 261 15 29 410 57 457 5.03e-33 130
MS.gene49711.t1 MTR_7g021510 28.438 429 246 16 16 410 40 441 6.86e-33 129
MS.gene49711.t1 MTR_7g080230 28.049 410 235 17 36 410 54 438 3.02e-32 127
MS.gene49711.t1 MTR_4g056420 25.888 394 242 15 40 403 64 437 6.98e-32 126
MS.gene49711.t1 MTR_5g016260 27.749 382 232 15 42 405 79 434 8.74e-31 124
MS.gene49711.t1 MTR_5g016260 27.749 382 232 15 42 405 79 434 1.63e-30 124
MS.gene49711.t1 MTR_4g095270 28.032 371 229 14 50 405 79 426 2.19e-30 123
MS.gene49711.t1 MTR_4g095270 28.032 371 229 14 50 405 79 426 4.24e-30 122
MS.gene49711.t1 MTR_2g084550 26.972 393 240 15 40 403 64 438 5.78e-30 121
MS.gene49711.t1 MTR_8g096990 27.204 397 238 16 31 405 65 432 4.01e-29 118
MS.gene49711.t1 MTR_8g038280 26.562 384 224 14 49 405 84 436 5.76e-29 117
MS.gene49711.t1 MTR_5g080890 27.225 382 220 16 50 405 85 434 2.52e-28 115
MS.gene49711.t1 MTR_7g102750 23.659 410 253 16 29 403 57 441 3.42e-28 116
MS.gene49711.t1 MTR_5g080960 26.963 382 221 16 50 405 85 434 6.08e-28 114
MS.gene49711.t1 MTR_1g078240 26.485 404 250 16 36 410 52 437 2.98e-27 113
MS.gene49711.t1 MTR_1g078240 26.420 405 250 17 36 410 52 438 2.53e-26 110
MS.gene49711.t1 MTR_5g022880 26.963 382 234 14 51 409 114 473 2.95e-25 108
MS.gene49711.t1 MTR_5g044770 27.394 376 218 17 50 402 85 428 4.83e-25 106
MS.gene49711.t1 MTR_2g067830 24.599 374 238 12 49 402 55 404 9.35e-25 105
MS.gene49711.t1 MTR_8g075090 27.123 424 256 19 14 412 78 473 1.09e-24 106
MS.gene49711.t1 MTR_8g075090 27.119 413 252 18 14 405 78 462 2.03e-24 105
MS.gene49711.t1 MTR_5g061690 25.510 392 245 16 43 412 94 460 3.01e-24 105
MS.gene49711.t1 MTR_3g097150 28.682 387 207 23 50 405 101 449 2.17e-23 102
MS.gene49711.t1 MTR_0036s0050 26.098 410 251 16 15 403 56 434 6.48e-23 100
MS.gene49711.t1 MTR_0036s0110 26.087 391 240 18 31 402 80 440 1.58e-22 99.4
MS.gene49711.t1 MTR_2g059460 26.385 379 217 16 52 402 60 404 1.66e-22 99.0
MS.gene49711.t1 MTR_7g102750 23.077 351 224 13 29 351 57 389 7.61e-22 97.4
MS.gene49711.t1 MTR_3g087780 25.330 379 225 14 56 405 104 453 9.97e-22 97.8
MS.gene49711.t1 MTR_7g080230 27.548 363 200 17 84 410 33 368 1.08e-21 96.7
MS.gene49711.t1 MTR_5g038360 26.632 383 235 17 38 402 80 434 1.58e-21 96.3
MS.gene49711.t1 MTR_5g008110 26.509 381 230 15 45 403 62 414 2.28e-21 95.9
MS.gene49711.t1 MTR_2g105300 23.978 367 233 14 55 401 41 381 3.48e-21 94.7
MS.gene49711.t1 MTR_1g078240 27.273 275 170 9 36 284 52 322 9.63e-21 93.6
MS.gene49711.t1 MTR_5g091130 27.877 391 223 18 50 405 190 556 1.00e-20 94.7
MS.gene49711.t1 MTR_3g070980 29.098 244 120 6 49 291 15 206 1.02e-20 90.1
MS.gene49711.t1 MTR_3g028120 24.485 388 231 15 47 405 85 439 1.79e-19 90.5
MS.gene49711.t1 MTR_2g070430 26.531 392 215 19 52 399 88 450 2.70e-19 90.1
MS.gene49711.t1 MTR_7g117430 26.014 419 251 18 9 403 102 485 4.07e-19 89.7
MS.gene49711.t1 MTR_8g075090 27.070 314 193 13 14 307 78 375 4.46e-19 89.4
MS.gene49711.t1 MTR_1g039270 25.806 372 228 15 50 402 127 469 5.45e-19 89.0
MS.gene49711.t1 MTR_2g059490 26.087 391 214 18 52 405 59 411 6.52e-19 88.6
MS.gene49711.t1 MTR_5g061690 26.019 319 206 12 102 412 25 321 1.32e-18 87.4
MS.gene49711.t1 MTR_6g090290 30.420 286 162 10 50 310 85 358 1.94e-18 87.4
MS.gene49711.t1 MTR_6g085010 26.005 373 208 19 56 402 161 491 3.67e-18 86.7
MS.gene49711.t1 MTR_8g038310 25.201 373 214 17 50 403 86 412 4.45e-18 85.9
MS.gene49711.t1 MTR_5g008070 25.201 373 233 16 50 403 80 425 5.91e-18 85.9
MS.gene49711.t1 MTR_1g115210 25.134 374 227 16 50 402 145 486 1.61e-17 84.7
MS.gene49711.t1 MTR_5g077850 24.041 391 228 13 54 407 84 442 2.09e-17 84.3
MS.gene49711.t1 MTR_3g065160 24.804 383 231 14 54 407 77 431 2.40e-17 84.0
MS.gene49711.t1 MTR_3g053980 26.203 374 238 14 44 402 135 485 5.60e-17 83.2
MS.gene49711.t1 MTR_2g028190 26.053 380 227 18 50 403 101 452 8.98e-17 82.4
MS.gene49711.t1 MTR_3g053710 26.777 422 250 23 12 402 73 466 1.23e-16 82.0
MS.gene49711.t1 MTR_3g087780 26.263 297 180 10 124 405 39 311 1.60e-16 81.3
MS.gene49711.t1 MTR_8g038250 24.934 377 217 15 50 405 85 416 1.66e-16 81.3
MS.gene49711.t1 MTR_3g087780 26.263 297 180 10 124 405 75 347 2.10e-16 80.9
MS.gene49711.t1 MTR_8g103880 30.952 168 97 7 54 217 119 271 9.18e-16 79.3
MS.gene49711.t1 MTR_6g088760 25.623 281 177 10 52 309 89 360 1.66e-15 78.6
MS.gene49711.t1 MTR_7g105850 24.208 442 268 23 6 402 46 465 3.16e-15 77.8
MS.gene49711.t1 MTR_4g109760 25.978 358 212 14 70 405 73 399 2.56e-13 71.6
MS.gene49711.t1 MTR_2g055840 24.156 385 234 15 45 395 6 366 1.94e-12 68.6
MS.gene49711.t1 MTR_3g068000 25.869 259 148 13 53 283 75 317 6.04e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49711.t1 AT4G33490 66.043 374 124 3 34 405 42 414 0.0 525
MS.gene49711.t1 AT4G33490 66.763 346 112 3 34 377 39 383 4.25e-171 484
MS.gene49711.t1 AT1G44130 53.050 377 169 6 36 408 33 405 4.23e-144 416
MS.gene49711.t1 AT1G77480 49.357 389 193 4 24 409 39 426 8.28e-135 394
MS.gene49711.t1 AT1G77480 49.223 386 192 4 24 406 39 423 3.39e-133 390
MS.gene49711.t1 AT1G49050 43.896 385 195 12 36 402 187 568 8.22e-94 293
MS.gene49711.t1 AT1G49050 43.243 370 189 12 51 402 29 395 3.13e-88 274
MS.gene49711.t1 AT1G49050 42.491 273 140 9 36 293 187 457 6.63e-60 202
MS.gene49711.t1 AT2G36670 26.750 400 244 13 33 403 79 458 4.26e-38 144
MS.gene49711.t1 AT1G65240 27.228 404 244 14 36 412 56 436 1.30e-36 139
MS.gene49711.t1 AT2G36670 26.420 405 244 14 33 403 79 463 5.41e-36 138
MS.gene49711.t1 AT5G22850 27.628 409 249 15 25 404 52 442 2.71e-35 136
MS.gene49711.t1 AT2G36670 26.316 380 233 12 51 403 33 392 3.85e-35 135
MS.gene49711.t1 AT2G36670 26.316 380 233 12 51 403 33 392 3.85e-35 135
MS.gene49711.t1 AT3G02740 27.500 400 246 13 36 410 67 447 1.33e-34 134
MS.gene49711.t1 AT5G43100 28.682 387 221 16 42 405 66 420 3.54e-34 133
MS.gene49711.t1 AT1G05840 27.226 393 230 12 50 410 78 446 7.28e-34 132
MS.gene49711.t1 AT5G43100 28.682 387 221 16 42 405 66 420 1.46e-33 132
MS.gene49711.t1 AT3G02740 27.062 388 241 12 46 410 4 372 3.46e-33 129
MS.gene49711.t1 AT5G36260 26.265 415 263 13 23 412 47 443 6.30e-32 127
MS.gene49711.t1 AT1G08210 27.340 406 241 14 29 403 59 441 1.01e-29 120
MS.gene49711.t1 AT1G08210 27.340 406 241 14 29 403 93 475 1.04e-29 120
MS.gene49711.t1 AT1G08210 27.340 406 241 14 29 403 107 489 1.40e-29 120
MS.gene49711.t1 AT3G50050 27.368 380 237 15 42 405 83 439 5.74e-28 116
MS.gene49711.t1 AT3G25700 27.013 385 232 18 50 402 82 449 1.54e-26 111
MS.gene49711.t1 AT2G17760 25.743 404 262 14 14 402 69 449 4.15e-26 110
MS.gene49711.t1 AT1G08210 27.021 433 235 18 29 403 59 468 2.28e-25 108
MS.gene49711.t1 AT5G10080 27.200 375 222 14 56 403 104 454 6.26e-24 104
MS.gene49711.t1 AT3G51350 27.540 374 227 16 51 402 101 452 1.89e-23 102
MS.gene49711.t1 AT4G35880 28.084 381 233 17 46 408 100 457 2.52e-23 102
MS.gene49711.t1 AT5G10770 25.867 375 239 16 44 403 124 474 3.66e-23 101
MS.gene49711.t1 AT3G51330 26.790 377 234 16 49 403 98 454 4.24e-22 98.2
MS.gene49711.t1 AT3G51330 26.862 376 233 16 49 402 98 453 5.17e-22 98.6
MS.gene49711.t1 AT2G03200 25.060 419 237 20 22 405 85 461 1.28e-21 97.1
MS.gene49711.t1 AT1G01300 28.232 379 212 18 50 402 140 484 1.62e-20 94.0
MS.gene49711.t1 AT2G28030 23.711 388 243 15 31 405 43 390 1.79e-19 90.1
MS.gene49711.t1 AT3G51340 26.190 378 238 15 49 402 99 459 2.28e-19 90.5
MS.gene49711.t1 AT1G66180 24.021 383 233 15 54 405 74 429 2.44e-19 90.1
MS.gene49711.t1 AT3G51340 25.676 370 238 13 49 402 99 447 4.71e-19 89.7
MS.gene49711.t1 AT2G28040 25.575 391 234 17 34 405 32 384 1.76e-18 87.0
MS.gene49711.t1 AT2G28040 25.575 391 234 17 34 405 41 393 3.58e-18 86.3
MS.gene49711.t1 AT4G35880 27.714 350 212 17 46 377 100 426 2.80e-17 84.0
MS.gene49711.t1 AT3G51360 22.788 373 248 12 49 403 2 352 2.96e-17 83.6
MS.gene49711.t1 AT2G42980 26.087 391 233 16 50 405 158 527 3.73e-17 84.0
MS.gene49711.t1 AT3G51360 23.720 371 241 13 51 403 100 446 5.35e-17 83.2
MS.gene49711.t1 AT3G51360 23.720 371 241 13 51 403 90 436 6.17e-17 83.2
MS.gene49711.t1 AT3G18490 24.468 376 226 20 50 402 160 500 8.46e-17 82.8
MS.gene49711.t1 AT3G20015 24.866 374 228 16 50 402 129 470 1.50e-16 81.6
MS.gene49711.t1 AT5G37540 25.450 389 226 16 54 406 82 442 2.05e-16 81.3
MS.gene49711.t1 AT3G51330 26.211 351 217 16 49 377 98 428 1.48e-15 78.6
MS.gene49711.t1 AT4G12920 24.409 254 177 9 52 300 58 301 3.00e-15 77.4
MS.gene49711.t1 AT3G54400 25.661 378 213 16 52 402 88 424 7.48e-15 76.3
MS.gene49711.t1 AT3G51340 26.923 260 173 8 56 301 107 363 2.42e-14 74.7
MS.gene49711.t1 AT4G30040 24.776 335 204 16 54 358 87 403 3.81e-14 74.3
MS.gene49711.t1 AT3G51340 26.449 276 185 9 56 317 107 378 5.31e-14 73.6
MS.gene49711.t1 AT1G25510 24.672 381 232 17 42 402 138 483 5.70e-14 73.9
MS.gene49711.t1 AT5G10760 27.451 255 157 9 50 291 130 369 6.74e-14 73.6
MS.gene49711.t1 AT3G51360 26.378 254 153 10 51 285 100 338 9.40e-14 72.4
MS.gene49711.t1 AT3G51360 25.185 270 168 10 51 301 100 354 1.79e-13 72.4
MS.gene49711.t1 AT3G51360 25.185 270 168 10 51 301 100 354 1.83e-13 72.0
MS.gene49711.t1 AT2G35615 25.581 387 232 16 50 404 83 445 2.16e-13 72.0
MS.gene49711.t1 AT3G51360 25.185 270 168 10 51 301 90 344 2.91e-13 71.2
MS.gene49711.t1 AT1G31450 25.714 385 230 17 50 403 83 442 3.16e-13 71.6
MS.gene49711.t1 AT3G51360 25.185 270 168 10 51 301 90 344 4.16e-13 70.9
MS.gene49711.t1 AT3G25700 35.938 128 71 7 50 167 82 208 9.53e-13 69.3
MS.gene49711.t1 AT5G02190 23.760 383 231 21 61 403 82 443 2.80e-12 68.6
MS.gene49711.t1 AT3G51360 22.118 321 196 12 102 403 25 310 9.72e-11 63.5
MS.gene49711.t1 AT3G51360 22.118 321 196 12 102 403 25 310 9.72e-11 63.5

Find 118 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATTGTGTTCCCTATTTA+TGG 0.060827 4.4:+7969540 MS.gene49711:CDS
AAACTGAAATCTCTGGATTT+TGG 0.144007 4.4:-7973086 None:intergenic
GGATAAACGTTGCCATAAAT+AGG 0.257987 4.4:-7969552 None:intergenic
AACGAATCGATTGATGAAAT+TGG 0.264253 4.4:-7971503 None:intergenic
TTTCCAAATGCAGCTGAATA+AGG 0.273485 4.4:+7972341 MS.gene49711:intron
ATTTCATAGTCACATTGATT+AGG 0.289901 4.4:-7970687 None:intergenic
CACCCTTTAGATGGAATACT+TGG 0.291237 4.4:+7971335 MS.gene49711:CDS
TTACCAAGCAATGATTTCTT+TGG 0.294065 4.4:+7971746 MS.gene49711:CDS
AGTGTCAACATCAAGAAAAT+AGG 0.297686 4.4:-7970217 None:intergenic
TTTCATAGTCACATTGATTA+GGG 0.312831 4.4:-7970686 None:intergenic
TCAACTTACCACCCTTTAGA+TGG 0.325308 4.4:+7971326 MS.gene49711:CDS
CTAAATTCTCACCTCCAATT+AGG 0.327781 4.4:-7972722 None:intergenic
TTGGGTGAACTGAACCTAAT+TGG 0.334057 4.4:+7972708 MS.gene49711:CDS
CGCACAAAGTGGATCTTTGC+AGG 0.373101 4.4:-7970628 None:intergenic
AGATCATAAACTGAAATCTC+TGG 0.399104 4.4:-7973093 None:intergenic
AGTTCACCCAATCCTACTTC+AGG 0.414059 4.4:-7972696 None:intergenic
AAGTTGAAGGTGAAAATATC+TGG 0.417456 4.4:-7971310 None:intergenic
GACAACGAGAAGCAGTTGAT+TGG 0.418942 4.4:+7973035 MS.gene49711:CDS
GTGCCATTCTAACTTTAAGT+TGG 0.419171 4.4:-7970785 None:intergenic
ATGGCAACGTTTATCCTGTT+GGG 0.427167 4.4:+7969559 MS.gene49711:CDS
GATAAACGTTGCCATAAATA+GGG 0.428708 4.4:-7969551 None:intergenic
GTGTCAACATCAAGAAAATA+GGG 0.431013 4.4:-7970216 None:intergenic
TGCTAGGCTTGTAGAGTGGA+TGG 0.432620 4.4:-7970593 None:intergenic
ATAGGTAAAGTCTGGTCATC+AGG 0.433183 4.4:-7972393 None:intergenic
AACAAGAAGAAGATGAAGAT+AGG 0.439947 4.4:+7969351 None:intergenic
TTAAATATTATCTTTGACAC+TGG 0.441413 4.4:+7971693 MS.gene49711:CDS
CTGAGAGTTGAAGTATGTAT+AGG 0.443665 4.4:-7971721 None:intergenic
GATATTATAAGATAAGCTTC+AGG 0.447328 4.4:-7972531 None:intergenic
GATATCACAGTTGAATAGTC+AGG 0.453876 4.4:+7971382 MS.gene49711:CDS
TTGGTGAAACTAAGTGTTAG+TGG 0.461386 4.4:-7972474 None:intergenic
AGTCCAAGTATTCCATCTAA+AGG 0.461510 4.4:-7971338 None:intergenic
AACTTTAAGTTGGACTCCAT+TGG 0.463263 4.4:-7970775 None:intergenic
TATGGCAACGTTTATCCTGT+TGG 0.466319 4.4:+7969558 MS.gene49711:CDS
GTTATTTGTTGCAAGAATAT+GGG 0.467337 4.4:+7972645 MS.gene49711:intron
TTAGATGGAATACTTGGACT+TGG 0.471121 4.4:+7971341 MS.gene49711:CDS
GAACGGCCCTGAAGTAGGAT+TGG 0.472405 4.4:+7972689 MS.gene49711:CDS
GGAATACTATTGCAATCTGC+AGG 0.473909 4.4:-7973065 None:intergenic
GTCCAAGTATTCCATCTAAA+GGG 0.477058 4.4:-7971337 None:intergenic
TAATATTACCTCAGAACATT+GGG 0.489036 4.4:-7970280 None:intergenic
ACATCAAGAAAATAGGGCCT+TGG 0.492843 4.4:-7970210 None:intergenic
AATGAAATATCATACCCAAC+AGG 0.493100 4.4:-7969573 None:intergenic
GGAGGAAGGAAGACCGGGGT+TGG 0.493414 4.4:+7971666 MS.gene49711:CDS
ACCTCAGAACATTGGGTACA+AGG 0.494290 4.4:-7970273 None:intergenic
CTTAAAGTTAGAATGGCACT+TGG 0.502205 4.4:+7970789 MS.gene49711:CDS
GCCAGCACATAGGTAAAGTC+TGG 0.502564 4.4:-7972401 None:intergenic
AACGGCCCTGAAGTAGGATT+GGG 0.503963 4.4:+7972690 MS.gene49711:CDS
GTTCACCCAATCCTACTTCA+GGG 0.504181 4.4:-7972695 None:intergenic
ATGATTCTTCTCGAATGAGT+TGG 0.504399 4.4:+7971477 MS.gene49711:CDS
TACCATCACTTTGTCTAGCA+TGG 0.505530 4.4:-7973009 None:intergenic
CAGGGTATAAAATCATTGCT+AGG 0.505848 4.4:-7970609 None:intergenic
ACAGTTGAATAGTCAGGGCT+TGG 0.506595 4.4:+7971388 MS.gene49711:CDS
AGGTTTAACTCTTCCACCAT+TGG 0.508559 4.4:-7972493 None:intergenic
AGTCCAACTTAAAGTTAGAA+TGG 0.510476 4.4:+7970782 MS.gene49711:CDS
TCAAGAAAATAGGGCCTTGG+TGG 0.511612 4.4:-7970207 None:intergenic
TACCTTCTCAACTTCACCAA+TGG 0.512014 4.4:+7970759 MS.gene49711:CDS
ACGAGAAGCAGTTGATTGGA+TGG 0.515480 4.4:+7973039 MS.gene49711:CDS
CTATACATACTTCAACTCTC+AGG 0.516576 4.4:+7971722 MS.gene49711:CDS
TGTTTAAGCTCGCGAGGAGG+GGG 0.519451 4.4:+7971431 MS.gene49711:CDS
ATGGAATACTTGGACTTGGA+AGG 0.520338 4.4:+7971345 MS.gene49711:CDS
TTTGATAATAAACGCAAAAG+TGG 0.521006 4.4:+7969447 MS.gene49711:CDS
ATTCTGAACGGCCCTGAAGT+AGG 0.523129 4.4:+7972684 MS.gene49711:CDS
CTTGAAGACATGGCTTCACC+TGG 0.531998 4.4:-7969486 None:intergenic
TCTAAAGGGTGGTAAGTTGA+AGG 0.532635 4.4:-7971323 None:intergenic
TGGAATACTTGGACTTGGAA+GGG 0.533058 4.4:+7971346 MS.gene49711:CDS
TTCACATGTGTAGTCATCGG+TGG 0.533364 4.4:-7970661 None:intergenic
GAAAATAGGGCCTTGGTGGT+TGG 0.533650 4.4:-7970203 None:intergenic
GGGCTTGGTGCGAAATGTGA+TGG 0.536228 4.4:+7971403 MS.gene49711:CDS
CGAGAAGCAGTTGATTGGAT+GGG 0.543766 4.4:+7973040 MS.gene49711:CDS
AGGGGAAAACATTACTCTGC+AGG 0.544182 4.4:+7971624 MS.gene49711:intron
AATATGGGAAATGTTTGTCT+AGG 0.546632 4.4:+7972660 MS.gene49711:CDS
ACCAGACTTTACCTATGTGC+TGG 0.546884 4.4:+7972400 MS.gene49711:CDS
GCTAGGCTTGTAGAGTGGAT+GGG 0.547249 4.4:-7970592 None:intergenic
CTCCATTGGTGAAGTTGAGA+AGG 0.547745 4.4:-7970761 None:intergenic
GGAATACTTGGACTTGGAAG+GGG 0.550065 4.4:+7971347 MS.gene49711:CDS
GTAATATTACCTCAGAACAT+TGG 0.551100 4.4:-7970281 None:intergenic
ACACTTAGTTTCACCAATGG+TGG 0.552466 4.4:+7972480 MS.gene49711:CDS
AGTCTCATGAACCATGCTGC+TGG 0.557344 4.4:+7969513 MS.gene49711:CDS
TCAGGAGGGATCTCAAACTG+AGG 0.558793 4.4:-7972513 None:intergenic
ATAAATAGGGAACACAATTG+AGG 0.560664 4.4:-7969538 None:intergenic
GTCTTCACATGTGTAGTCAT+CGG 0.562506 4.4:-7970664 None:intergenic
GCTGATCAATACTCAACCCT+TGG 0.562559 4.4:+7970717 MS.gene49711:CDS
CTAGGCTTGTAGAGTGGATG+GGG 0.563976 4.4:-7970591 None:intergenic
TGACCAAAGAAATCATTGCT+TGG 0.564667 4.4:-7971749 None:intergenic
ACTTCATTTATGCTTCTGAA+AGG 0.566258 4.4:-7972435 None:intergenic
ATATCACAGTTGAATAGTCA+GGG 0.567767 4.4:+7971383 MS.gene49711:CDS
GAGACTTGGTCTTGAAGACA+TGG 0.568180 4.4:-7969496 None:intergenic
ATTGTTTAAGCTCGCGAGGA+GGG 0.569291 4.4:+7971429 MS.gene49711:CDS
TCACATGTGTAGTCATCGGT+GGG 0.576365 4.4:-7970660 None:intergenic
GTAGTCATCGGTGGGCTGCA+AGG 0.578017 4.4:-7970652 None:intergenic
TATAATGTTACTCTCAACAT+AGG 0.586798 4.4:+7970180 MS.gene49711:CDS
GCAGCATGGTTCATGAGACT+TGG 0.589743 4.4:-7969510 None:intergenic
CATTGTTTAAGCTCGCGAGG+AGG 0.594028 4.4:+7971428 MS.gene49711:CDS
GAGAAGCAGTTGATTGGATG+GGG 0.594642 4.4:+7973041 MS.gene49711:CDS
GGCTTGGTGCGAAATGTGAT+GGG 0.595102 4.4:+7971404 MS.gene49711:CDS
ATTCAACTGTGATATCAAGC+TGG 0.597014 4.4:-7971375 None:intergenic
ACTTGGACTTGGAAGGGGAA+AGG 0.604303 4.4:+7971352 MS.gene49711:CDS
CTAACACTTAGTTTCACCAA+TGG 0.609380 4.4:+7972477 MS.gene49711:CDS
ACTTTACCTATGTGCTGGCA+TGG 0.609706 4.4:+7972405 MS.gene49711:CDS
TTGTTTAAGCTCGCGAGGAG+GGG 0.611048 4.4:+7971430 MS.gene49711:CDS
ATCATTTAGAAGTACACCAA+GGG 0.613371 4.4:-7970733 None:intergenic
GGACATTGTTTAAGCTCGCG+AGG 0.614419 4.4:+7971425 MS.gene49711:CDS
AATATTTAAACTTCCAACCC+CGG 0.615370 4.4:-7971679 None:intergenic
TTAAAGTTAGAATGGCACTT+GGG 0.620505 4.4:+7970790 MS.gene49711:CDS
ATTATAAGATAAGCTTCAGG+AGG 0.624826 4.4:-7972528 None:intergenic
GGCTGCAAGGACGCACAAAG+TGG 0.636372 4.4:-7970639 None:intergenic
TCCTTGTACCCAATGTTCTG+AGG 0.637225 4.4:+7970272 MS.gene49711:CDS
ATCCATGCTAGACAAAGTGA+TGG 0.638414 4.4:+7973007 MS.gene49711:CDS
ACACTGGTAGCGAACTCACA+TGG 0.642611 4.4:+7970235 MS.gene49711:CDS
GGTGAACTGAACCTAATTGG+AGG 0.647086 4.4:+7972711 MS.gene49711:CDS
CAAGTATTCCATCTAAAGGG+TGG 0.648915 4.4:-7971334 None:intergenic
GGGTACAAGGAGCATCACAT+TGG 0.654731 4.4:-7970260 None:intergenic
GTTTGTCTAGGCATTCTGAA+CGG 0.654989 4.4:+7972672 MS.gene49711:CDS
CATCATTTAGAAGTACACCA+AGG 0.656080 4.4:-7970734 None:intergenic
TCATTGCTAGGCTTGTAGAG+TGG 0.663615 4.4:-7970597 None:intergenic
CAATTGAGGAACCAGCAGCA+TGG 0.669395 4.4:-7969524 None:intergenic
GCACAAAGTGGATCTTTGCA+GGG 0.673503 4.4:-7970627 None:intergenic
TCAACATAGGCCAACCACCA+AGG 0.689202 4.4:+7970193 MS.gene49711:CDS
TTATAAGATAAGCTTCAGGA+GGG 0.705622 4.4:-7972527 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATTCAATTCATAAA+AGG - chr4.4:7969719-7969738 None:intergenic 10.0%
!! TTATACTAGAAATTATTAAT+TGG + chr4.4:7972289-7972308 MS.gene49711:intron 10.0%
!!! AAATTGATATTCATTTTTAT+TGG + chr4.4:7969981-7970000 MS.gene49711:intron 10.0%
!!! AATAATGTTTTTCTTTTTTA+AGG + chr4.4:7969644-7969663 MS.gene49711:intron 10.0%
!!! ATTAATAATTTCTAGTATAA+AGG - chr4.4:7972289-7972308 None:intergenic 10.0%
!!! ATTTATATTATTTTCTAGAA+TGG - chr4.4:7972073-7972092 None:intergenic 10.0%
!!! TGAATTGAATTTTAATTTTT+TGG + chr4.4:7969723-7969742 MS.gene49711:intron 10.0%
!! ATATTATATGCAATTTATGT+AGG - chr4.4:7970528-7970547 None:intergenic 15.0%
!! ATGATTTATATAAGTGAATT+AGG + chr4.4:7970955-7970974 MS.gene49711:intron 15.0%
!! ATTAACATAAGATATAATCA+AGG + chr4.4:7972007-7972026 MS.gene49711:intron 15.0%
!! TAAGTATTTAATGATGAAAT+TGG - chr4.4:7972225-7972244 None:intergenic 15.0%
!! TTGTTAACTGTTATAATAAA+TGG + chr4.4:7972586-7972605 MS.gene49711:intron 15.0%
!!! AATATTTTGTGATTTCAAAA+TGG + chr4.4:7972098-7972117 MS.gene49711:intron 15.0%
!! AATAGATATGACATAAATTG+TGG - chr4.4:7971226-7971245 None:intergenic 20.0%
!! ATATTATGTTATGTAAGTGT+TGG + chr4.4:7972963-7972982 MS.gene49711:intron 20.0%
!! ATGATATTTCATTTCTTTCT+AGG + chr4.4:7969583-7969602 MS.gene49711:intron 20.0%
!! ATTAGAATATCAATTTCATG+AGG - chr4.4:7970125-7970144 None:intergenic 20.0%
!! TTAAATATTATCTTTGACAC+TGG + chr4.4:7971693-7971712 MS.gene49711:CDS 20.0%
!! TTCACTTATATAAATCATTC+TGG - chr4.4:7970953-7970972 None:intergenic 20.0%
!!! ACAGACAAATGTATTTTTTT+GGG + chr4.4:7970004-7970023 MS.gene49711:intron 20.0%
!!! GGTTTTCTTTTATTTAATTG+TGG - chr4.4:7969937-7969956 None:intergenic 20.0%
!!! GTATTTTTAGTTAACTAGTT+TGG + chr4.4:7971941-7971960 MS.gene49711:intron 20.0%
!!! TTGTTTATTTATTTCTGTCA+TGG - chr4.4:7972255-7972274 None:intergenic 20.0%
!!! TTTCTTGTTTATCAATTCTT+AGG + chr4.4:7969832-7969851 MS.gene49711:intron 20.0%
! ACTAGAAATTATTAATTGGC+AGG + chr4.4:7972293-7972312 MS.gene49711:intron 25.0%
! ATTTATGTGTATTACACAAC+AGG - chr4.4:7972141-7972160 None:intergenic 25.0%
! CAAAAAAAAAATTACTCTGG+TGG + chr4.4:7970486-7970505 MS.gene49711:intron 25.0%
! CAGCAAAAAAAAAATTACTC+TGG + chr4.4:7970483-7970502 MS.gene49711:intron 25.0%
! CATGTCATTATATTGTTGAA+AGG - chr4.4:7971184-7971203 None:intergenic 25.0%
! GATATTATAAGATAAGCTTC+AGG - chr4.4:7972534-7972553 None:intergenic 25.0%
! GCATTTGGAAAATTAACAAA+AGG - chr4.4:7972332-7972351 None:intergenic 25.0%
! GTAATGTAATCAAGTAGTTA+TGG + chr4.4:7971807-7971826 MS.gene49711:intron 25.0%
! TAATATTACCTCAGAACATT+GGG - chr4.4:7970283-7970302 None:intergenic 25.0%
! TATAATGTTACTCTCAACAT+AGG + chr4.4:7970180-7970199 MS.gene49711:CDS 25.0%
! TCAAGTAGTTATGGTTATTA+TGG + chr4.4:7971816-7971835 MS.gene49711:intron 25.0%
! TTGATTACATTACTTCTAAG+AGG - chr4.4:7971800-7971819 None:intergenic 25.0%
! TTTATGTGTATTACACAACA+GGG - chr4.4:7972140-7972159 None:intergenic 25.0%
! TTTCAATTTCAGTATATCCA+AGG + chr4.4:7972037-7972056 MS.gene49711:intron 25.0%
!! ATTTCATAGTCACATTGATT+AGG - chr4.4:7970690-7970709 None:intergenic 25.0%
!! GTTATTTGTTGCAAGAATAT+GGG + chr4.4:7972645-7972664 MS.gene49711:intron 25.0%
!! TGATTACATTACTTCTAAGA+GGG - chr4.4:7971799-7971818 None:intergenic 25.0%
!! TGTTATTTGTTGCAAGAATA+TGG + chr4.4:7972644-7972663 MS.gene49711:intron 25.0%
!! TTTCATAGTCACATTGATTA+GGG - chr4.4:7970689-7970708 None:intergenic 25.0%
!! TTTGATAATAAACGCAAAAG+TGG + chr4.4:7969447-7969466 MS.gene49711:CDS 25.0%
!!! ATGTGCTGATTATAATTGAT+TGG + chr4.4:7970453-7970472 MS.gene49711:intron 25.0%
!!! GACAGACAAATGTATTTTTT+TGG + chr4.4:7970003-7970022 MS.gene49711:intron 25.0%
!!! TGTATTTTTTTGGGACATTT+TGG + chr4.4:7970013-7970032 MS.gene49711:intron 25.0%
AAATTTCCAAGCAACAGAAA+AGG - chr4.4:7969859-7969878 None:intergenic 30.0%
AACACTTTCAAGGATCAAAA+TGG - chr4.4:7971858-7971877 None:intergenic 30.0%
AACGAATCGATTGATGAAAT+TGG - chr4.4:7971506-7971525 None:intergenic 30.0%
AAGTTGAAGGTGAAAATATC+TGG - chr4.4:7971313-7971332 None:intergenic 30.0%
AATATGGGAAATGTTTGTCT+AGG + chr4.4:7972660-7972679 MS.gene49711:CDS 30.0%
AATATTTAAACTTCCAACCC+CGG - chr4.4:7971682-7971701 None:intergenic 30.0%
AATGAAATATCATACCCAAC+AGG - chr4.4:7969576-7969595 None:intergenic 30.0%
AATTTCCAAGCAACAGAAAA+GGG - chr4.4:7969858-7969877 None:intergenic 30.0%
ACTTCATTTATGCTTCTGAA+AGG - chr4.4:7972438-7972457 None:intergenic 30.0%
AGTCCAACTTAAAGTTAGAA+TGG + chr4.4:7970782-7970801 MS.gene49711:CDS 30.0%
AGTGTCAACATCAAGAAAAT+AGG - chr4.4:7970220-7970239 None:intergenic 30.0%
AGTTTAAGGGGTTAAAAGAT+CGG - chr4.4:7970081-7970100 None:intergenic 30.0%
ATAAATAGGGAACACAATTG+AGG - chr4.4:7969541-7969560 None:intergenic 30.0%
ATATCACAGTTGAATAGTCA+GGG + chr4.4:7971383-7971402 MS.gene49711:CDS 30.0%
ATATTTCAAGAGAACATGCA+AGG - chr4.4:7970828-7970847 None:intergenic 30.0%
ATTATAAGATAAGCTTCAGG+AGG - chr4.4:7972531-7972550 None:intergenic 30.0%
CCTGCAAAAGTTGAAATTTA+CGG - chr4.4:7970157-7970176 None:intergenic 30.0%
CTGCAAAAGTTGAAATTTAC+GGG - chr4.4:7970156-7970175 None:intergenic 30.0%
GATAAACGTTGCCATAAATA+GGG - chr4.4:7969554-7969573 None:intergenic 30.0%
GTAATATTACCTCAGAACAT+TGG - chr4.4:7970284-7970303 None:intergenic 30.0%
GTGTCAACATCAAGAAAATA+GGG - chr4.4:7970219-7970238 None:intergenic 30.0%
TCAAATAGTAGATCATGCAT+TGG - chr4.4:7971140-7971159 None:intergenic 30.0%
TCAATTGTGTTCCCTATTTA+TGG + chr4.4:7969540-7969559 MS.gene49711:CDS 30.0%
TCATATCCACATCTGTATAT+TGG - chr4.4:7971290-7971309 None:intergenic 30.0%
TTAAAGTTAGAATGGCACTT+GGG + chr4.4:7970790-7970809 MS.gene49711:CDS 30.0%
TTACCAAGCAATGATTTCTT+TGG + chr4.4:7971746-7971765 MS.gene49711:CDS 30.0%
TTATAAGATAAGCTTCAGGA+GGG - chr4.4:7972530-7972549 None:intergenic 30.0%
TTGATTCCAATATACAGATG+TGG + chr4.4:7971281-7971300 MS.gene49711:intron 30.0%
TTTGTGGAATGGTAAAACTT+AGG - chr4.4:7971115-7971134 None:intergenic 30.0%
! AAACTGAAATCTCTGGATTT+TGG - chr4.4:7973089-7973108 None:intergenic 30.0%
! ATCATTTAGAAGTACACCAA+GGG - chr4.4:7970736-7970755 None:intergenic 30.0%
! ATTACATTACTTCTAAGAGG+GGG - chr4.4:7971797-7971816 None:intergenic 30.0%
! GATTACATTACTTCTAAGAG+GGG - chr4.4:7971798-7971817 None:intergenic 30.0%
! TATTTTCTTGATGTTGACAC+TGG + chr4.4:7970219-7970238 MS.gene49711:CDS 30.0%
! TTAGCTACATTGTCGTATTT+TGG + chr4.4:7972741-7972760 MS.gene49711:intron 30.0%
!! CTTTTATGTTGTTTGTGTCA+GGG + chr4.4:7971605-7971624 MS.gene49711:intron 30.0%
!! TCTTTTATGTTGTTTGTGTC+AGG + chr4.4:7971604-7971623 MS.gene49711:intron 30.0%
!! TTTTATGTTGTTTGTGTCAG+GGG + chr4.4:7971606-7971625 MS.gene49711:intron 30.0%
AAAACCTCTTCTGACATTGA+TGG + chr4.4:7969951-7969970 MS.gene49711:intron 35.0%
AAACCTCTTCTGACATTGAT+GGG + chr4.4:7969952-7969971 MS.gene49711:intron 35.0%
AGAAAGTAATATTCCAGTCC+TGG - chr4.4:7969817-7969836 None:intergenic 35.0%
AGTCCAAGTATTCCATCTAA+AGG - chr4.4:7971341-7971360 None:intergenic 35.0%
ATGATTCTTCTCGAATGAGT+TGG + chr4.4:7971477-7971496 MS.gene49711:CDS 35.0%
ATGTATCTATAGGCAAGGAT+GGG - chr4.4:7970379-7970398 None:intergenic 35.0%
ATTCAACTGTGATATCAAGC+TGG - chr4.4:7971378-7971397 None:intergenic 35.0%
ATTCCTTATTCAGCTGCATT+TGG - chr4.4:7972347-7972366 None:intergenic 35.0%
CAAAAGTTGAAATTTACGGG+CGG - chr4.4:7970153-7970172 None:intergenic 35.0%
CAGGGTATAAAATCATTGCT+AGG - chr4.4:7970612-7970631 None:intergenic 35.0%
CGTAGAAGAGTTTGATAAGT+TGG - chr4.4:7972565-7972584 None:intergenic 35.0%
CTAAATTCTCACCTCCAATT+AGG - chr4.4:7972725-7972744 None:intergenic 35.0%
CTAACACTTAGTTTCACCAA+TGG + chr4.4:7972477-7972496 MS.gene49711:CDS 35.0%
CTATACATACTTCAACTCTC+AGG + chr4.4:7971722-7971741 MS.gene49711:CDS 35.0%
CTGAGAGTTGAAGTATGTAT+AGG - chr4.4:7971724-7971743 None:intergenic 35.0%
CTTAAAGTTAGAATGGCACT+TGG + chr4.4:7970789-7970808 MS.gene49711:CDS 35.0%
GATATCACAGTTGAATAGTC+AGG + chr4.4:7971382-7971401 MS.gene49711:CDS 35.0%
GGATAAACGTTGCCATAAAT+AGG - chr4.4:7969555-7969574 None:intergenic 35.0%
GTCCAAGTATTCCATCTAAA+GGG - chr4.4:7971340-7971359 None:intergenic 35.0%
GTGTTTCTCGTTAGTTAGTT+TGG + chr4.4:7971910-7971929 MS.gene49711:intron 35.0%
TATGTATCTATAGGCAAGGA+TGG - chr4.4:7970380-7970399 None:intergenic 35.0%
TCAACGCGTTATGTATCTAT+AGG - chr4.4:7970389-7970408 None:intergenic 35.0%
TGACCAAAGAAATCATTGCT+TGG - chr4.4:7971752-7971771 None:intergenic 35.0%
TGAGTATCCAAATTCATACC+AGG + chr4.4:7969796-7969815 MS.gene49711:intron 35.0%
TTAACCCCTTAAACTCAAAC+CGG + chr4.4:7970086-7970105 MS.gene49711:intron 35.0%
TTAGATGGAATACTTGGACT+TGG + chr4.4:7971341-7971360 MS.gene49711:CDS 35.0%
TTGGTGAAACTAAGTGTTAG+TGG - chr4.4:7972477-7972496 None:intergenic 35.0%
TTTCCAAATGCAGCTGAATA+AGG + chr4.4:7972341-7972360 MS.gene49711:intron 35.0%
! CATCATTTAGAAGTACACCA+AGG - chr4.4:7970737-7970756 None:intergenic 35.0%
! CCGTAAATTTCAACTTTTGC+AGG + chr4.4:7970154-7970173 MS.gene49711:intron 35.0%
! GGAAGAAACTCAATTTTACC+AGG + chr4.4:7969468-7969487 MS.gene49711:CDS 35.0%
! GTGCCATTCTAACTTTAAGT+TGG - chr4.4:7970788-7970807 None:intergenic 35.0%
!! AACTTTAAGTTGGACTCCAT+TGG - chr4.4:7970778-7970797 None:intergenic 35.0%
!! TGGTGCTACATAGATAGTAA+TGG + chr4.4:7972887-7972906 MS.gene49711:intron 35.0%
!! TTCAACCGGTTTGAGTTTAA+GGG - chr4.4:7970094-7970113 None:intergenic 35.0%
AACCTCTTCTGACATTGATG+GGG + chr4.4:7969953-7969972 MS.gene49711:intron 40.0%
ACACTTAGTTTCACCAATGG+TGG + chr4.4:7972480-7972499 MS.gene49711:CDS 40.0%
ACATCAAGAAAATAGGGCCT+TGG - chr4.4:7970213-7970232 None:intergenic 40.0%
ACTTGTCTTCTTGTTCAGCT+TGG + chr4.4:7969424-7969443 MS.gene49711:intron 40.0%
AGAATGGACACTATAGTCCT+TGG - chr4.4:7972057-7972076 None:intergenic 40.0%
AGGTTTAACTCTTCCACCAT+TGG - chr4.4:7972496-7972515 None:intergenic 40.0%
ATAGGTAAAGTCTGGTCATC+AGG - chr4.4:7972396-7972415 None:intergenic 40.0%
ATCCAAATTCATACCAGGAC+TGG + chr4.4:7969801-7969820 MS.gene49711:intron 40.0%
ATCCATGCTAGACAAAGTGA+TGG + chr4.4:7973007-7973026 MS.gene49711:CDS 40.0%
ATGGAATACTTGGACTTGGA+AGG + chr4.4:7971345-7971364 MS.gene49711:CDS 40.0%
ATGGCAACGTTTATCCTGTT+GGG + chr4.4:7969559-7969578 MS.gene49711:CDS 40.0%
CAAGTATTCCATCTAAAGGG+TGG - chr4.4:7971337-7971356 None:intergenic 40.0%
CACCCTTTAGATGGAATACT+TGG + chr4.4:7971335-7971354 MS.gene49711:CDS 40.0%
GACATAAATTGTGGTCATCG+TGG - chr4.4:7971217-7971236 None:intergenic 40.0%
GCGTTATGTATCTATAGGCA+AGG - chr4.4:7970384-7970403 None:intergenic 40.0%
GGAATACTATTGCAATCTGC+AGG - chr4.4:7973068-7973087 None:intergenic 40.0%
GTCTTCACATGTGTAGTCAT+CGG - chr4.4:7970667-7970686 None:intergenic 40.0%
GTTTGTCTAGGCATTCTGAA+CGG + chr4.4:7972672-7972691 MS.gene49711:CDS 40.0%
TACCATCACTTTGTCTAGCA+TGG - chr4.4:7973012-7973031 None:intergenic 40.0%
TACCTTCTCAACTTCACCAA+TGG + chr4.4:7970759-7970778 MS.gene49711:CDS 40.0%
TATGGCAACGTTTATCCTGT+TGG + chr4.4:7969558-7969577 MS.gene49711:CDS 40.0%
TCAACTTACCACCCTTTAGA+TGG + chr4.4:7971326-7971345 MS.gene49711:CDS 40.0%
TGCTATTGTCTCTATGTGTG+AGG - chr4.4:7971087-7971106 None:intergenic 40.0%
TGGAATACTTGGACTTGGAA+GGG + chr4.4:7971346-7971365 MS.gene49711:CDS 40.0%
TTCCAGTCCTGGTATGAATT+TGG - chr4.4:7969806-7969825 None:intergenic 40.0%
TTGGGTGAACTGAACCTAAT+TGG + chr4.4:7972708-7972727 MS.gene49711:CDS 40.0%
! ACACCTTCAGTTTGAAGTGT+TGG + chr4.4:7972867-7972886 MS.gene49711:intron 40.0%
! TCTAAAGGGTGGTAAGTTGA+AGG - chr4.4:7971326-7971345 None:intergenic 40.0%
!! CTTCAACCGGTTTGAGTTTA+AGG - chr4.4:7970095-7970114 None:intergenic 40.0%
!! TCAACCGGTTTGAGTTTAAG+GGG - chr4.4:7970093-7970112 None:intergenic 40.0%
!!! CTGAACTTGTTTTTGGAGGA+AGG + chr4.4:7971652-7971671 MS.gene49711:CDS 40.0%
!!! TCATCAGGTGCTGCTTTTAT+TGG - chr4.4:7972381-7972400 None:intergenic 40.0%
ACAGTTGAATAGTCAGGGCT+TGG + chr4.4:7971388-7971407 MS.gene49711:CDS 45.0%
ACCAGACTTTACCTATGTGC+TGG + chr4.4:7972400-7972419 MS.gene49711:CDS 45.0%
ACCTCAGAACATTGGGTACA+AGG - chr4.4:7970276-7970295 None:intergenic 45.0%
ACCTCTTCTGACATTGATGG+GGG + chr4.4:7969954-7969973 MS.gene49711:intron 45.0%
ACGAGAAGCAGTTGATTGGA+TGG + chr4.4:7973039-7973058 MS.gene49711:CDS 45.0%
AGATAGGTAGGGTGGGATTA+AGG + chr4.4:7969367-7969386 MS.gene49711:intron 45.0%
AGGGGAAAACATTACTCTGC+AGG + chr4.4:7971624-7971643 MS.gene49711:intron 45.0%
AGTTCACCCAATCCTACTTC+AGG - chr4.4:7972699-7972718 None:intergenic 45.0%
ATGAGGTTCGCTACTTCAAC+CGG - chr4.4:7970108-7970127 None:intergenic 45.0%
ATGCCTAGACGACTACACAA+TGG + chr4.4:7971023-7971042 MS.gene49711:intron 45.0%
ATTGTTTAAGCTCGCGAGGA+GGG + chr4.4:7971429-7971448 MS.gene49711:CDS 45.0%
CCTCCAAAAACAAGTTCAGC+TGG - chr4.4:7971651-7971670 None:intergenic 45.0%
CGAGAAGCAGTTGATTGGAT+GGG + chr4.4:7973040-7973059 MS.gene49711:CDS 45.0%
CTCCATTGGTGAAGTTGAGA+AGG - chr4.4:7970764-7970783 None:intergenic 45.0%
GACAACGAGAAGCAGTTGAT+TGG + chr4.4:7973035-7973054 MS.gene49711:CDS 45.0%
GAGAAGCAGTTGATTGGATG+GGG + chr4.4:7973041-7973060 MS.gene49711:CDS 45.0%
GATAGGTAGGGTGGGATTAA+GGG + chr4.4:7969368-7969387 MS.gene49711:intron 45.0%
GCACAAAGTGGATCTTTGCA+GGG - chr4.4:7970630-7970649 None:intergenic 45.0%
GCACCAACACTTCAAACTGA+AGG - chr4.4:7972873-7972892 None:intergenic 45.0%
GCTGACGCTTAACACTTTCA+AGG - chr4.4:7971868-7971887 None:intergenic 45.0%
GCTGATCAATACTCAACCCT+TGG + chr4.4:7970717-7970736 MS.gene49711:CDS 45.0%
GGAATACTTGGACTTGGAAG+GGG + chr4.4:7971347-7971366 MS.gene49711:CDS 45.0%
GGTGAACTGAACCTAATTGG+AGG + chr4.4:7972711-7972730 MS.gene49711:CDS 45.0%
GTTCACCCAATCCTACTTCA+GGG - chr4.4:7972698-7972717 None:intergenic 45.0%
TCAAGAAAATAGGGCCTTGG+TGG - chr4.4:7970210-7970229 None:intergenic 45.0%
TCACATGTGTAGTCATCGGT+GGG - chr4.4:7970663-7970682 None:intergenic 45.0%
TCATTGCTAGGCTTGTAGAG+TGG - chr4.4:7970600-7970619 None:intergenic 45.0%
TCCTTGTACCCAATGTTCTG+AGG + chr4.4:7970272-7970291 MS.gene49711:CDS 45.0%
TTCACATGTGTAGTCATCGG+TGG - chr4.4:7970664-7970683 None:intergenic 45.0%
! ACTTTACCTATGTGCTGGCA+TGG + chr4.4:7972405-7972424 MS.gene49711:CDS 45.0%
! AGATCATGCATTGGCGTTTG+TGG - chr4.4:7971131-7971150 None:intergenic 45.0%
! ATGCATTGGCGTTTGTGGAA+TGG - chr4.4:7971126-7971145 None:intergenic 45.0%
! CTTCAAACTGAAGGTGTGTC+TGG - chr4.4:7972864-7972883 None:intergenic 45.0%
! CTTTTACCATGCCAGCACAT+AGG - chr4.4:7972414-7972433 None:intergenic 45.0%
! TGATGCGCCATACTGACTAA+CGG - chr4.4:7971983-7972002 None:intergenic 45.0%
! TTAGGCCCTTTTCTGTTGCT+TGG + chr4.4:7969850-7969869 MS.gene49711:intron 45.0%
!! GAGACTTGGTCTTGAAGACA+TGG - chr4.4:7969499-7969518 None:intergenic 45.0%
!! GGACCAGCTGAACTTGTTTT+TGG + chr4.4:7971645-7971664 MS.gene49711:CDS 45.0%
!! GTTTTTGGAGGAAGGAAGAC+CGG + chr4.4:7971660-7971679 MS.gene49711:CDS 45.0%
!! TTTTTGGAGGAAGGAAGACC+GGG + chr4.4:7971661-7971680 MS.gene49711:CDS 45.0%
!!! CCAGCTGAACTTGTTTTTGG+AGG + chr4.4:7971648-7971667 MS.gene49711:CDS 45.0%
AACGGCCCTGAAGTAGGATT+GGG + chr4.4:7972690-7972709 MS.gene49711:CDS 50.0%
ACTTGGACTTGGAAGGGGAA+AGG + chr4.4:7971352-7971371 MS.gene49711:CDS 50.0%
AGTCTCATGAACCATGCTGC+TGG + chr4.4:7969513-7969532 MS.gene49711:CDS 50.0%
ATTCTGAACGGCCCTGAAGT+AGG + chr4.4:7972684-7972703 MS.gene49711:CDS 50.0%
CAATTGAGGAACCAGCAGCA+TGG - chr4.4:7969527-7969546 None:intergenic 50.0%
CATTGTTTAAGCTCGCGAGG+AGG + chr4.4:7971428-7971447 MS.gene49711:CDS 50.0%
CGACCATTGTGTAGTCGTCT+AGG - chr4.4:7971029-7971048 None:intergenic 50.0%
CGCACAAAGTGGATCTTTGC+AGG - chr4.4:7970631-7970650 None:intergenic 50.0%
CTAGGCTTGTAGAGTGGATG+GGG - chr4.4:7970594-7970613 None:intergenic 50.0%
CTTCTGACATTGATGGGGGA+AGG + chr4.4:7969958-7969977 MS.gene49711:intron 50.0%
CTTGAAGACATGGCTTCACC+TGG - chr4.4:7969489-7969508 None:intergenic 50.0%
GCAGCATGGTTCATGAGACT+TGG - chr4.4:7969513-7969532 None:intergenic 50.0%
GCCAGCACATAGGTAAAGTC+TGG - chr4.4:7972404-7972423 None:intergenic 50.0%
GCTAGGCTTGTAGAGTGGAT+GGG - chr4.4:7970595-7970614 None:intergenic 50.0%
GGACATTGTTTAAGCTCGCG+AGG + chr4.4:7971425-7971444 MS.gene49711:CDS 50.0%
GGAGGGGGATACATCTTCTT+TGG + chr4.4:7971446-7971465 MS.gene49711:CDS 50.0%
GGTGGGATTAAGGGTGATGA+TGG + chr4.4:7969377-7969396 MS.gene49711:intron 50.0%
GTGCCTTCCGTTAGTCAGTA+TGG + chr4.4:7971973-7971992 MS.gene49711:intron 50.0%
TCAACATAGGCCAACCACCA+AGG + chr4.4:7970193-7970212 MS.gene49711:CDS 50.0%
TCAGGAGGGATCTCAAACTG+AGG - chr4.4:7972516-7972535 None:intergenic 50.0%
TCCCCCATCAATGTCAGAAG+AGG - chr4.4:7969958-7969977 None:intergenic 50.0%
TGCTAGGCTTGTAGAGTGGA+TGG - chr4.4:7970596-7970615 None:intergenic 50.0%
TTGTTTAAGCTCGCGAGGAG+GGG + chr4.4:7971430-7971449 MS.gene49711:CDS 50.0%
! ACACTGGTAGCGAACTCACA+TGG + chr4.4:7970235-7970254 MS.gene49711:CDS 50.0%
! GAAAATAGGGCCTTGGTGGT+TGG - chr4.4:7970206-7970225 None:intergenic 50.0%
!! GGCTTGGTGCGAAATGTGAT+GGG + chr4.4:7971404-7971423 MS.gene49711:CDS 50.0%
!! GGGTACAAGGAGCATCACAT+TGG - chr4.4:7970263-7970282 None:intergenic 50.0%
!! TTTTGGAGGAAGGAAGACCG+GGG + chr4.4:7971662-7971681 MS.gene49711:CDS 50.0%
GAACGGCCCTGAAGTAGGAT+TGG + chr4.4:7972689-7972708 MS.gene49711:CDS 55.0%
TCTGGTGTGCGAGACATGTC+TGG - chr4.4:7972846-7972865 None:intergenic 55.0%
TGTTTAAGCTCGCGAGGAGG+GGG + chr4.4:7971431-7971450 MS.gene49711:CDS 55.0%
! GCGCCATACTGACTAACGGA+AGG - chr4.4:7971979-7971998 None:intergenic 55.0%
!! GGGCTTGGTGCGAAATGTGA+TGG + chr4.4:7971403-7971422 MS.gene49711:CDS 55.0%
GGCTGCAAGGACGCACAAAG+TGG - chr4.4:7970642-7970661 None:intergenic 60.0%
!! GTAGTCATCGGTGGGCTGCA+AGG - chr4.4:7970655-7970674 None:intergenic 60.0%
GGAGGAAGGAAGACCGGGGT+TGG + chr4.4:7971666-7971685 MS.gene49711:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 7969363 7973112 7969363 ID=MS.gene49711
chr4.4 mRNA 7969363 7973112 7969363 ID=MS.gene49711.t1;Parent=MS.gene49711
chr4.4 exon 7969363 7969372 7969363 ID=MS.gene49711.t1.exon1;Parent=MS.gene49711.t1
chr4.4 CDS 7969363 7969372 7969363 ID=cds.MS.gene49711.t1;Parent=MS.gene49711.t1
chr4.4 exon 7969442 7969580 7969442 ID=MS.gene49711.t1.exon2;Parent=MS.gene49711.t1
chr4.4 CDS 7969442 7969580 7969442 ID=cds.MS.gene49711.t1;Parent=MS.gene49711.t1
chr4.4 exon 7970176 7970293 7970176 ID=MS.gene49711.t1.exon3;Parent=MS.gene49711.t1
chr4.4 CDS 7970176 7970293 7970176 ID=cds.MS.gene49711.t1;Parent=MS.gene49711.t1
chr4.4 exon 7970588 7970811 7970588 ID=MS.gene49711.t1.exon4;Parent=MS.gene49711.t1
chr4.4 CDS 7970588 7970811 7970588 ID=cds.MS.gene49711.t1;Parent=MS.gene49711.t1
chr4.4 exon 7971298 7971522 7971298 ID=MS.gene49711.t1.exon5;Parent=MS.gene49711.t1
chr4.4 CDS 7971298 7971522 7971298 ID=cds.MS.gene49711.t1;Parent=MS.gene49711.t1
chr4.4 exon 7971626 7971767 7971626 ID=MS.gene49711.t1.exon6;Parent=MS.gene49711.t1
chr4.4 CDS 7971626 7971767 7971626 ID=cds.MS.gene49711.t1;Parent=MS.gene49711.t1
chr4.4 exon 7972354 7972554 7972354 ID=MS.gene49711.t1.exon7;Parent=MS.gene49711.t1
chr4.4 CDS 7972354 7972554 7972354 ID=cds.MS.gene49711.t1;Parent=MS.gene49711.t1
chr4.4 exon 7972660 7972732 7972660 ID=MS.gene49711.t1.exon8;Parent=MS.gene49711.t1
chr4.4 CDS 7972660 7972732 7972660 ID=cds.MS.gene49711.t1;Parent=MS.gene49711.t1
chr4.4 exon 7973003 7973112 7973003 ID=MS.gene49711.t1.exon9;Parent=MS.gene49711.t1
chr4.4 CDS 7973003 7973112 7973003 ID=cds.MS.gene49711.t1;Parent=MS.gene49711.t1
Gene Sequence

>MS.gene49711

ATGAAGATAGGTAGGGTGGGATTAAGGGTGATGATGGTTGCATTGATGATGATGATGTTAAACTTGTCTTCTTGTTCAGCTTGGTTTGATAATAAACGCAAAAGTGGAAGAAACTCAATTTTACCAGGTGAAGCCATGTCTTCAAGACCAAGTCTCATGAACCATGCTGCTGGTTCCTCAATTGTGTTCCCTATTTATGGCAACGTTTATCCTGTTGGGTATGATATTTCATTTCTTTCTAGGTTGCTTATTTTGTTTCATCTTTTGTAATTCATTTTTATAATAATGTTTTTCTTTTTTAAGGTATATAACTTTTCTCAAGTGTTCTGTTTTTTTAATAATTTCTTTAAGAACCTTTTATGAATTGAATTTTAATTTTTTGGATCTTAGCAAAAATAATATTTTGAAACATTTTCATTTTTTTTGAAAGATGTGAGTATCCAAATTCATACCAGGACTGGAATATTACTTTCTTGTTTATCAATTCTTAGGCCCTTTTCTGTTGCTTGGAAATTTAACTTATTTAAAGAACAGAAAGAAGATGAAACAGAAAGAAAGATACTATTTTTTTCCACAATTAAATAAAAGAAAACCTCTTCTGACATTGATGGGGGAAGGAAATTGATATTCATTTTTATTGGACAGACAAATGTATTTTTTTGGGACATTTTGGACATACAAATGTTAGTATTTTCTCTTTAACGAGAGATTGACTCCGATCTTTTAACCCCTTAAACTCAAACCGGTTGAAGTAGCGAACCTCATGAAATTGATATTCTAATATTAGCCGCCCGTAAATTTCAACTTTTGCAGGTTCTATAATGTTACTCTCAACATAGGCCAACCACCAAGGCCCTATTTTCTTGATGTTGACACTGGTAGCGAACTCACATGGCTCCAATGTGATGCTCCTTGTACCCAATGTTCTGAGGTAATATTACACTAACTGAAAAATCTCACAGCAGTTACAAATTTTTTAAACTCTTAATTGACAAAGAAAGTGAAGTACAGAACCCATCCTTGCCTATAGATACATAACGCGTTGACAACAAATCACATGCGTAACTTTGAAAATAGTTATCAGTAAATGATGTGCTGATTATAATTGATTGGTACATATCAGCAAAAAAAAAATTACTCTGGTGGTGTATATCAATTAATTCCTACATAAATTGCATATAATATATGTCATATTGATTTGAATTTGCTGATAAAAAAATTTCAGACACCCCATCCACTCTACAAGCCTAGCAATGATTTTATACCCTGCAAAGATCCACTTTGTGCGTCCTTGCAGCCCACCGATGACTACACATGTGAAGACCCTAATCAATGTGACTATGAAATTAAGTATGCTGATCAATACTCAACCCTTGGTGTACTTCTAAATGATGTTTACCTTCTCAACTTCACCAATGGAGTCCAACTTAAAGTTAGAATGGCACTTGGGTTAGTTTACTGTCCTTGCATGTTCTCTTGAAATATTAGTGTTTCTGATAGCAAGCTTTTATAAAAGACTTTCAGCTAAAATAGTCTTAGCAAAGTTGTTTATGCTTCTTAATTTACAATACGAAATACAAATACAAACCAGAATGATTTATATAAGTGAATTAGGCTATTTTTGAACATATTCTCTCATTAGAAATTACACTTGAAGTCAATGCCTAGACGACTACACAATGGTCGAAACTTAGATGCAGTACTACAAGTACAGTTCTTATCCTCACACATAGAGACAATAGCACTGTACCTAAGTTTTACCATTCCACAAACGCCAATGCATGATCTACTATTTGACACATTAAGAATATATTTGATCCTTTCAACAATATAATGACATGTTTGACATATCCACGATGACCACAATTTATGTCATATCTATTTTTGTTGAGATGTTCTTAGAATTTATCTAATGCACTTGATTCCAATATACAGATGTGGATATGACCAGATATTTTCACCTTCAACTTACCACCCTTTAGATGGAATACTTGGACTTGGAAGGGGAAAGGCCAGCTTGATATCACAGTTGAATAGTCAGGGCTTGGTGCGAAATGTGATGGGACATTGTTTAAGCTCGCGAGGAGGGGGATACATCTTCTTTGGAAATGCTTATGATTCTTCTCGAATGAGTTGGACTCCAATTTCATCAATCGATTCGTTAGTACACTATTCTCATTTTACACGATCTACATGTATTATACTAGTGACTCATAATTTTATGAGATCTCTCGATTTAAATCTTTTATGTTGTTTGTGTCAGGGGAAAACATTACTCTGCAGGACCAGCTGAACTTGTTTTTGGAGGAAGGAAGACCGGGGTTGGAAGTTTAAATATTATCTTTGACACTGGAAGTTCCTATACATACTTCAACTCTCAGGCTTACCAAGCAATGATTTCTTTGGTCAGTTAAAAACATTTTTCATTATACCCCCTCTTAGAAGTAATGTAATCAAGTAGTTATGGTTATTATGGTTTACATAGTAAATAGCCATTTTGATCCTTGAAAGTGTTAAGCGTCAGCACTGTCACGAAAATTCTCAAGTGTGTTTCTCGTTAGTTAGTTTGGTCTTCAAAGTATTTTTAGTTAACTAGTTTGGTCATTGAATGTGCCTTCCGTTAGTCAGTATGGCGCATCAAATTATTAACATAAGATATAATCAAGGATATTTTTTTCAATTTCAGTATATCCAAGGACTATAGTGTCCATTCTAGAAAATAATATAAATAGAAAAATATTTTGTGATTTCAAAATGGTAGTACTGTATCATAACCCTGTTGTGTAATACACATAAATTTTCTCATCTGCTTTCTCATTTGCTCAATCAACTTGAGATATTTTCAGAAGATCATTCATGCCAATTTCATCATTAAATACTTAAATTGTACCATGACAGAAATAAATAAACAAAGTAATTTCTTCCTTTATACTAGAAATTATTAATTGGCAGGTTAGTTAAGATGACCTTTTGTTAATTTTCCAAATGCAGCTGAATAAGGAATTACATAGAAAGCCAATAAAAGCAGCACCTGATGACCAGACTTTACCTATGTGCTGGCATGGTAAAAGACCTTTCAGAAGCATAAATGAAGTGAAGAAATACTTCAAGCCACTAACACTTAGTTTCACCAATGGTGGAAGAGTTAAACCTCAGTTTGAGATCCCTCCTGAAGCTTATCTTATAATATCAGTGAGTTCCAACTTATCAAACTCTTCTACGTTTGTTAACTGTTATAATAAATGGTACACACATTTCAATATGTGTGAATGTTAACAATGTGTTATTTGTTGCAAGAATATGGGAAATGTTTGTCTAGGCATTCTGAACGGCCCTGAAGTAGGATTGGGTGAACTGAACCTAATTGGAGGTGAGAATTTAGCTACATTGTCGTATTTTGGATGATAATCTATGAAGCATCGACACAAATACAAACACGACATGAAAGTAATGAATATATTCATTTGTGTCAGTCTTGTGCCAGACATGTCTCGCACACCAGACACACCTTCAGTTTGAAGTGTTGGTGCTACATAGATAGTAATGGATATCATCATTACTTTGTTCAGCAGTTTATCAAAAAAAAGATTCATGAACTCTATATTATGTTATGTAAGTGTTGGTATTATTGTTTATGCAGACATATCCATGCTAGACAAAGTGATGGTATTCGACAACGAGAAGCAGTTGATTGGATGGGGACCTGCAGATTGCAATAGTATTCCAAAATCCAGAGATTTCAGTTTATGA
Protein sequence

>MS.gene49711.t1

MKIAWFDNKRKSGRNSILPGEAMSSRPSLMNHAAGSSIVFPIYGNVYPVGFYNVTLNIGQPPRPYFLDVDTGSELTWLQCDAPCTQCSETPHPLYKPSNDFIPCKDPLCASLQPTDDYTCEDPNQCDYEIKYADQYSTLGVLLNDVYLLNFTNGVQLKVRMALGCGYDQIFSPSTYHPLDGILGLGRGKASLISQLNSQGLVRNVMGHCLSSRGGGYIFFGNAYDSSRMSWTPISSIDSGKHYSAGPAELVFGGRKTGVGSLNIIFDTGSSYTYFNSQAYQAMISLLNKELHRKPIKAAPDDQTLPMCWHGKRPFRSINEVKKYFKPLTLSFTNGGRVKPQFEIPPEAYLIISNMGNVCLGILNGPEVGLGELNLIGDISMLDKVMVFDNEKQLIGWGPADCNSIPKSRDFSL