Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49936.t1 | XP_013453052.1 | 98.8 | 640 | 7 | 1 | 56 | 695 | 1 | 639 | 0.00E+00 | 1297 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49936.t1 | Q9LHF5 | 48.6 | 601 | 246 | 14 | 101 | 686 | 45 | 597 | 1.1e-148 | 528.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49936.t1 | A0A072UMI5 | 98.8 | 640 | 7 | 1 | 56 | 695 | 1 | 639 | 0.0e+00 | 1297.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051198 | MS.gene49936 | 0.824617 | 7.33E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49936.t1 | MTR_6g085190 | 98.750 | 640 | 7 | 1 | 56 | 695 | 1 | 639 | 0.0 | 1306 |
| MS.gene49936.t1 | MTR_4g127880 | 46.835 | 316 | 154 | 5 | 76 | 379 | 109 | 422 | 2.50e-85 | 284 |
| MS.gene49936.t1 | MTR_4g127880 | 60.759 | 79 | 30 | 1 | 605 | 683 | 641 | 718 | 8.10e-23 | 104 |
| MS.gene49936.t1 | MTR_4g127880 | 46.835 | 316 | 154 | 5 | 76 | 379 | 89 | 402 | 2.62e-85 | 283 |
| MS.gene49936.t1 | MTR_4g127880 | 60.759 | 79 | 30 | 1 | 605 | 683 | 621 | 698 | 8.50e-23 | 103 |
| MS.gene49936.t1 | MTR_5g066440 | 40.678 | 295 | 172 | 3 | 102 | 395 | 133 | 425 | 1.63e-69 | 238 |
| MS.gene49936.t1 | MTR_5g066440 | 57.143 | 70 | 30 | 0 | 609 | 678 | 513 | 582 | 3.19e-20 | 95.5 |
| MS.gene49936.t1 | MTR_4g127880 | 42.781 | 187 | 101 | 2 | 198 | 379 | 34 | 219 | 8.10e-38 | 148 |
| MS.gene49936.t1 | MTR_4g127880 | 60.759 | 79 | 30 | 1 | 605 | 683 | 438 | 515 | 4.73e-23 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49936.t1 | AT3G24440 | 48.586 | 601 | 244 | 14 | 101 | 686 | 45 | 595 | 1.35e-179 | 525 |
| MS.gene49936.t1 | AT3G24440 | 48.419 | 601 | 247 | 14 | 101 | 686 | 45 | 597 | 4.84e-179 | 523 |
| MS.gene49936.t1 | AT5G57380 | 43.345 | 293 | 149 | 6 | 105 | 395 | 110 | 387 | 4.44e-68 | 234 |
| MS.gene49936.t1 | AT5G57380 | 52.000 | 75 | 36 | 0 | 609 | 683 | 510 | 584 | 4.58e-16 | 82.4 |
| MS.gene49936.t1 | AT5G57380 | 43.003 | 293 | 151 | 5 | 105 | 395 | 130 | 408 | 7.57e-68 | 234 |
| MS.gene49936.t1 | AT5G57380 | 52.000 | 75 | 36 | 0 | 609 | 683 | 530 | 604 | 5.29e-16 | 82.4 |
| MS.gene49936.t1 | AT4G30200 | 40.054 | 367 | 188 | 7 | 59 | 399 | 73 | 433 | 1.40e-64 | 227 |
| MS.gene49936.t1 | AT4G30200 | 55.172 | 87 | 37 | 1 | 600 | 686 | 583 | 667 | 5.68e-22 | 101 |
| MS.gene49936.t1 | AT4G30200 | 38.786 | 379 | 188 | 7 | 59 | 399 | 90 | 462 | 1.62e-64 | 225 |
| MS.gene49936.t1 | AT4G30200 | 40.054 | 367 | 188 | 7 | 59 | 399 | 90 | 450 | 2.18e-64 | 226 |
| MS.gene49936.t1 | AT4G30200 | 55.172 | 87 | 37 | 1 | 600 | 686 | 600 | 684 | 5.35e-22 | 101 |
| MS.gene49936.t1 | AT4G30200 | 38.786 | 379 | 188 | 7 | 59 | 399 | 90 | 462 | 1.18e-63 | 225 |
| MS.gene49936.t1 | AT4G30200 | 55.172 | 87 | 37 | 1 | 600 | 686 | 612 | 696 | 4.85e-22 | 101 |
| MS.gene49936.t1 | AT2G18880 | 38.870 | 301 | 169 | 7 | 105 | 399 | 119 | 410 | 1.10e-52 | 191 |
| MS.gene49936.t1 | AT2G18880 | 50.667 | 75 | 37 | 0 | 612 | 686 | 440 | 514 | 7.64e-17 | 84.7 |
| MS.gene49936.t1 | AT2G18870 | 51.648 | 91 | 41 | 1 | 594 | 681 | 123 | 213 | 1.18e-18 | 86.3 |
Find 172 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTTCCAACCTTTGGATTC+TGG | 0.204447 | 6.4:+59308881 | None:intergenic |
| AAAATCCTCCTCTGATCTTT+TGG | 0.225978 | 6.4:+59308286 | None:intergenic |
| CGTAACTTCTGAGGACATTA+AGG | 0.258985 | 6.4:-59308374 | MS.gene49936:CDS |
| CACCAAAAGCGTTGAGATAT+TGG | 0.279016 | 6.4:-59308170 | MS.gene49936:CDS |
| TACCAATATCTCAACGCTTT+TGG | 0.280459 | 6.4:+59308168 | None:intergenic |
| TAAAGGAGAACCGTTTATTA+AGG | 0.300683 | 6.4:+59307577 | None:intergenic |
| ATAGGATATATTTGAGCTTC+AGG | 0.301437 | 6.4:-59309114 | MS.gene49936:CDS |
| TTCGTTTGGTCTCCAGGTTT+CGG | 0.314155 | 6.4:+59307691 | None:intergenic |
| CCTACAGAATGTGTCGTCTT+TGG | 0.328733 | 6.4:+59310278 | None:intergenic |
| AACTTCTTCGTTTGGTCTCC+AGG | 0.330854 | 6.4:+59307685 | None:intergenic |
| CAGGATGACTGAAAAGAAAA+AGG | 0.333304 | 6.4:-59310460 | MS.gene49936:CDS |
| TCCATTTCTTGCCCTCTTGT+TGG | 0.338773 | 6.4:+59307316 | None:intergenic |
| ACAAGAGGCAAAGGCTAAAC+TGG | 0.339079 | 6.4:-59309047 | MS.gene49936:CDS |
| GCCTCCTGCGGTAAAGTTAC+TGG | 0.341604 | 6.4:-59310066 | MS.gene49936:CDS |
| CTCTTCAAACACAAACTTGC+AGG | 0.354732 | 6.4:+59308441 | None:intergenic |
| ATACTCAAAGTTCTCATCTA+AGG | 0.365083 | 6.4:+59307532 | None:intergenic |
| GGAAGAGCGATCGGTGCATT+TGG | 0.365367 | 6.4:-59307900 | MS.gene49936:CDS |
| AATTGACATGAATGCTAAAC+AGG | 0.369248 | 6.4:-59308128 | MS.gene49936:CDS |
| ATAACAAGGATCCTAGTCTT+TGG | 0.376232 | 6.4:-59310221 | MS.gene49936:CDS |
| AATTCGTTGGCTAGAATGTC+AGG | 0.388611 | 6.4:-59307498 | MS.gene49936:CDS |
| GATGAAGAGCACATTCAATA+TGG | 0.388919 | 6.4:+59310151 | None:intergenic |
| CAAGAACAAGGCTGCCTTGA+GGG | 0.391006 | 6.4:-59307986 | MS.gene49936:CDS |
| CACTTTGCAGCAGGCTGTTG+AGG | 0.405269 | 6.4:-59307780 | MS.gene49936:CDS |
| GCAGGTGGTACAAATCGAAT+AGG | 0.405556 | 6.4:+59310372 | None:intergenic |
| TGTGGGATCGATCTCCAGTT+TGG | 0.407580 | 6.4:+59308069 | None:intergenic |
| ACAGCAGGAACTTCTTCGTT+TGG | 0.411595 | 6.4:+59307677 | None:intergenic |
| GATCGATGATCCGAGTAGTT+TGG | 0.412460 | 6.4:-59307375 | MS.gene49936:CDS |
| TGCTTACATGGTTTAGTTTG+AGG | 0.422999 | 6.4:-59307445 | MS.gene49936:CDS |
| GTAACTTCTGAGGACATTAA+GGG | 0.426701 | 6.4:-59308373 | MS.gene49936:CDS |
| GCTGATCCTCCTTCTGATTA+CGG | 0.427415 | 6.4:-59310351 | MS.gene49936:CDS |
| AAACAGGATGATACTGAAAC+TGG | 0.428677 | 6.4:-59308112 | MS.gene49936:CDS |
| GCTTACATGGTTTAGTTTGA+GGG | 0.431261 | 6.4:-59307444 | MS.gene49936:CDS |
| TTCTGCACATCACTGGCAAT+AGG | 0.433169 | 6.4:+59308959 | None:intergenic |
| AAATGCACCGATCGCTCTTC+CGG | 0.433270 | 6.4:+59307902 | None:intergenic |
| TTCTGAAGTCCGGTCGGAAA+AGG | 0.439812 | 6.4:-59310533 | MS.gene49936:CDS |
| AAGGTCTCGAACCTTGAATC+CGG | 0.441293 | 6.4:+59308036 | None:intergenic |
| CAGTGAACCAGGCTCCAAAC+TGG | 0.443554 | 6.4:-59308083 | MS.gene49936:CDS |
| TCCAACAAGAGGGCAAGAAA+TGG | 0.444776 | 6.4:-59307317 | MS.gene49936:CDS |
| TTGGAAGAACCACCGTCAAC+AGG | 0.444884 | 6.4:+59309010 | None:intergenic |
| GTGCTTGTCTTTATCAAAGC+AGG | 0.449057 | 6.4:+59310498 | None:intergenic |
| TGTGACAGCACCTTAATAAA+CGG | 0.450247 | 6.4:-59307587 | MS.gene49936:CDS |
| ACATTAAGGGATTCAAACTA+TGG | 0.453105 | 6.4:-59308360 | MS.gene49936:CDS |
| TCTGCACATCACTGGCAATA+GGG | 0.453195 | 6.4:+59308960 | None:intergenic |
| GACAATGCCACGTACCATCT+TGG | 0.453446 | 6.4:+59308991 | None:intergenic |
| ATTGTATCTTATACAGATGT+TGG | 0.454036 | 6.4:-59308223 | MS.gene49936:CDS |
| AAGAATATTCTGTGCAAGGC+TGG | 0.454526 | 6.4:+59308251 | None:intergenic |
| GGATTCAAGGTTCGAGACCT+TGG | 0.456764 | 6.4:-59308034 | MS.gene49936:CDS |
| TCGATCTCCAGTTTGGAGCC+TGG | 0.456949 | 6.4:+59308076 | None:intergenic |
| CGCTACCATGTGGTCTTGCT+AGG | 0.457631 | 6.4:+59307720 | None:intergenic |
| GTGAGTTCTTCGTTCAAGTC+AGG | 0.459213 | 6.4:+59307842 | None:intergenic |
| CAATGGTTGCACTTTGCAGC+AGG | 0.460748 | 6.4:-59307789 | MS.gene49936:CDS |
| ATGTCCTCAGAAGTTACGTT+TGG | 0.462457 | 6.4:+59308379 | None:intergenic |
| TTAGGCTGAAATTGCTTACA+TGG | 0.463255 | 6.4:-59307457 | MS.gene49936:CDS |
| GTGTGGATGTACTATGCTAT+AGG | 0.467184 | 6.4:-59309132 | MS.gene49936:CDS |
| GGCAAAGGCTAAACTGGAAA+AGG | 0.469157 | 6.4:-59309041 | MS.gene49936:CDS |
| CTTCATAAGTTTCTGAAGTC+CGG | 0.469377 | 6.4:-59310543 | MS.gene49936:CDS |
| GTCATATGAAGAAAGAGTTT+AGG | 0.474263 | 6.4:-59307475 | MS.gene49936:CDS |
| GTAGCGGTGGTTCCGAAACC+TGG | 0.474866 | 6.4:-59307703 | MS.gene49936:CDS |
| AATGACTTACCCCGGATTCA+AGG | 0.475344 | 6.4:-59308047 | MS.gene49936:CDS |
| AAAGTTGGAGTTGTTGATCA+TGG | 0.477180 | 6.4:-59310123 | MS.gene49936:CDS |
| AACGATCAAGCCTAGCCATC+CGG | 0.494565 | 6.4:-59307921 | MS.gene49936:CDS |
| TGGTACGTGGCATTGTCAGC+AGG | 0.498805 | 6.4:-59308985 | MS.gene49936:CDS |
| ATTACGGACATTCAAACTCC+TGG | 0.498965 | 6.4:-59310335 | MS.gene49936:CDS |
| GGACAGCTGATGCAACTTGA+TGG | 0.502049 | 6.4:-59310102 | MS.gene49936:CDS |
| AACACAAACTTGCAGGCAGC+AGG | 0.502593 | 6.4:+59308448 | None:intergenic |
| TGAGCACTGATTGCCGAGGC+CGG | 0.504332 | 6.4:+59310422 | None:intergenic |
| GCACATTTCTTCAGAAAAGC+AGG | 0.504952 | 6.4:-59310479 | MS.gene49936:CDS |
| GATCGCTCTTCCGGATGGCT+AGG | 0.507299 | 6.4:+59307911 | None:intergenic |
| GGTAAAGTTACTGGAATACT+TGG | 0.508656 | 6.4:-59310057 | MS.gene49936:CDS |
| GAACCATCGGGTGCATGTAA+AGG | 0.509944 | 6.4:+59307560 | None:intergenic |
| AGGTCTCGAACCTTGAATCC+GGG | 0.512295 | 6.4:+59308037 | None:intergenic |
| AAGGAAGTTGGTCCTGTTGA+CGG | 0.515182 | 6.4:-59309022 | MS.gene49936:CDS |
| TAAATATAGCGAAAGATGCT+CGG | 0.525599 | 6.4:-59309156 | MS.gene49936:CDS |
| CTCAAGGAAGCAACTTCGCA+AGG | 0.525647 | 6.4:-59310403 | MS.gene49936:CDS |
| ACTATGGTATTACAAGACTA+GGG | 0.525868 | 6.4:-59308344 | MS.gene49936:CDS |
| AGCGAAAGATGCTCGGCGTG+TGG | 0.526435 | 6.4:-59309149 | MS.gene49936:CDS |
| ACTGGAGGAGGCAGTGAACC+AGG | 0.528460 | 6.4:-59308094 | MS.gene49936:CDS |
| CAGGTGGTACAAATCGAATA+GGG | 0.533496 | 6.4:+59310373 | None:intergenic |
| TGGATTCAATAACAAGGTTG+TGG | 0.533711 | 6.4:-59307297 | MS.gene49936:CDS |
| CAGAAACAACATTCAGATCA+AGG | 0.533858 | 6.4:+59307867 | None:intergenic |
| TCTAAGGAGAACGAACCATC+GGG | 0.533883 | 6.4:+59307548 | None:intergenic |
| CATCAGCTTTCTCAATAGCA+AGG | 0.536745 | 6.4:+59308927 | None:intergenic |
| ACAGAGTTTCTGCACATCAC+TGG | 0.537538 | 6.4:+59308952 | None:intergenic |
| TAATCAGAAGGAGGATCAGC+AGG | 0.538096 | 6.4:+59310354 | None:intergenic |
| GCCTCGGCAATCAGTGCTCA+AGG | 0.540279 | 6.4:-59310419 | MS.gene49936:CDS |
| CGAAAAGAATATTCTGTGCA+AGG | 0.542417 | 6.4:+59308247 | None:intergenic |
| CTATTGAGAAAGCTGATGAA+TGG | 0.543260 | 6.4:-59308922 | MS.gene49936:CDS |
| TATACAGATGTTGGCGACCA+TGG | 0.544516 | 6.4:-59308214 | MS.gene49936:CDS |
| CCATCTCTTCGATGATAACA+AGG | 0.545578 | 6.4:-59310235 | MS.gene49936:CDS |
| CAAGGATCCTAGTCTTTGGT+TGG | 0.547359 | 6.4:-59310217 | MS.gene49936:CDS |
| ATTGTGTTAAAGTAATTCGT+TGG | 0.547857 | 6.4:-59307511 | MS.gene49936:CDS |
| CTTGCTTGGGCTCAAGAACA+AGG | 0.549129 | 6.4:-59307998 | MS.gene49936:CDS |
| GCCGCCACTTATGAATCAAA+CGG | 0.550747 | 6.4:-59310766 | None:intergenic |
| GCTAAACTGGAAAAGGAAGT+TGG | 0.550877 | 6.4:-59309034 | MS.gene49936:CDS |
| AATCCGGGGTAAGTCATTGT+GGG | 0.553208 | 6.4:+59308052 | None:intergenic |
| CTGCATACCAACCAAAGACT+AGG | 0.554285 | 6.4:+59310210 | None:intergenic |
| ATGGTTTAGTTTGAGGGCAA+CGG | 0.555090 | 6.4:-59307438 | MS.gene49936:CDS |
| TCATCCCGAGAAGACTCAAA+AGG | 0.555122 | 6.4:+59307815 | None:intergenic |
| TTCTCATGTTCAAAGCACTC+TGG | 0.555151 | 6.4:-59310609 | MS.gene49936:CDS |
| CTGCAAGTTTGTGTTTGAAG+AGG | 0.555223 | 6.4:-59308440 | MS.gene49936:CDS |
| AACTATGGTATTACAAGACT+AGG | 0.555562 | 6.4:-59308345 | MS.gene49936:CDS |
| GGATTCTGGATTGTCATCAG+TGG | 0.556540 | 6.4:+59308895 | None:intergenic |
| GATGATCCGAGTAGTTTGGC+AGG | 0.560501 | 6.4:-59307371 | MS.gene49936:CDS |
| CTGATATTATATCCAACAAG+AGG | 0.561241 | 6.4:-59307328 | MS.gene49936:CDS |
| CTTGTTCTTGAGCCCAAGCA+AGG | 0.563534 | 6.4:+59307999 | None:intergenic |
| TATTCCAGTAACTTTACCGC+AGG | 0.566806 | 6.4:+59310062 | None:intergenic |
| ATCTAAGGAGAACGAACCAT+CGG | 0.568116 | 6.4:+59307547 | None:intergenic |
| AGTTGACCTGCCAAACTACT+CGG | 0.568871 | 6.4:+59307365 | None:intergenic |
| GAATCCGGGGTAAGTCATTG+TGG | 0.569331 | 6.4:+59308051 | None:intergenic |
| TCCAGTAACTTTACCGCAGG+AGG | 0.569932 | 6.4:+59310065 | None:intergenic |
| CCTTGTTATCATCGAAGAGA+TGG | 0.571222 | 6.4:+59310235 | None:intergenic |
| ATCAGCTTTCTCAATAGCAA+GGG | 0.571702 | 6.4:+59308928 | None:intergenic |
| AAGAACAAGGCTGCCTTGAG+GGG | 0.571814 | 6.4:-59307985 | MS.gene49936:CDS |
| TAGCCATCCGGAAGAGCGAT+CGG | 0.577859 | 6.4:-59307909 | MS.gene49936:CDS |
| GTATGCAGTGAATCTTCTCA+AGG | 0.582388 | 6.4:-59310195 | MS.gene49936:CDS |
| GGCAACGGAACAAGAGCGTA+GGG | 0.584349 | 6.4:-59307423 | MS.gene49936:CDS |
| GTGTGTTTCCAAAAGATCAG+AGG | 0.586881 | 6.4:-59308294 | MS.gene49936:CDS |
| TGACATGGTACAAGAGGCAA+AGG | 0.592745 | 6.4:-59309056 | MS.gene49936:CDS |
| CGGCACGGCAAAACCCCTCA+AGG | 0.593163 | 6.4:+59307972 | None:intergenic |
| TGACGGTGGTTCTTCCAAGA+TGG | 0.594589 | 6.4:-59309005 | MS.gene49936:CDS |
| GTTGACTCCCGCATAGTCGT+AGG | 0.596566 | 6.4:-59307656 | MS.gene49936:CDS |
| TCTCCTTTACATGCACCCGA+TGG | 0.598572 | 6.4:-59307563 | MS.gene49936:CDS |
| TTCATGTCAATTGATGAAGT+CGG | 0.599447 | 6.4:+59308139 | None:intergenic |
| TCTTCTCAAGGGGACTCATG+TGG | 0.600895 | 6.4:-59310183 | MS.gene49936:CDS |
| TGAGAAAGCTGATGAATGGT+TGG | 0.603762 | 6.4:-59308918 | MS.gene49936:CDS |
| GCACCGATCGCTCTTCCGGA+TGG | 0.607338 | 6.4:+59307906 | None:intergenic |
| CGGACTTCAGAAACTTATGA+AGG | 0.607463 | 6.4:+59310544 | None:intergenic |
| CAAGGTGCAAAATCTTTCCA+AGG | 0.610341 | 6.4:+59308017 | None:intergenic |
| TCCTTGAGCACTGATTGCCG+AGG | 0.613500 | 6.4:+59310418 | None:intergenic |
| GGGCAACGGAACAAGAGCGT+AGG | 0.614096 | 6.4:-59307424 | MS.gene49936:CDS |
| ATTGCATGACATGGTACAAG+AGG | 0.616726 | 6.4:-59309062 | MS.gene49936:CDS |
| TGTTTCCAAAAGATCAGAGG+AGG | 0.617266 | 6.4:-59308291 | MS.gene49936:CDS |
| AATGCCAAACGTAACTTCTG+AGG | 0.620213 | 6.4:-59308383 | MS.gene49936:CDS |
| TTTGAATGTCCGTAATCAGA+AGG | 0.621485 | 6.4:+59310342 | None:intergenic |
| TGATATTATATCCAACAAGA+GGG | 0.623788 | 6.4:-59307327 | MS.gene49936:CDS |
| ACTATGCGGGAGTCAACAGC+AGG | 0.624903 | 6.4:+59307662 | None:intergenic |
| TATGCAGTGAATCTTCTCAA+GGG | 0.633109 | 6.4:-59310194 | MS.gene49936:CDS |
| TTGAGCTTCAGGCTTCTGAA+CGG | 0.633588 | 6.4:-59309103 | MS.gene49936:CDS |
| GTAAAGTTACTGGAATACTT+GGG | 0.634259 | 6.4:-59310056 | MS.gene49936:intron |
| ACTTGCACCTACGACTATGC+GGG | 0.634727 | 6.4:+59307649 | None:intergenic |
| CTAGCAAGACCACATGGTAG+CGG | 0.635274 | 6.4:-59307719 | MS.gene49936:CDS |
| ATAAGTTTCTGAAGTCCGGT+CGG | 0.635908 | 6.4:-59310539 | MS.gene49936:CDS |
| GCATAGTCGTAGGTGCAAGT+AGG | 0.636726 | 6.4:-59307646 | MS.gene49936:CDS |
| CCAAAGACGACACATTCTGT+AGG | 0.639129 | 6.4:-59310278 | MS.gene49936:CDS |
| AAGACGACACATTCTGTAGG+AGG | 0.639361 | 6.4:-59310275 | MS.gene49936:CDS |
| ATGCAGTGAATCTTCTCAAG+GGG | 0.641363 | 6.4:-59310193 | MS.gene49936:CDS |
| TCAAGAACAAGGCTGCCTTG+AGG | 0.643311 | 6.4:-59307987 | MS.gene49936:CDS |
| AATATTCTGTGCAAGGCTGG+AGG | 0.643828 | 6.4:+59308254 | None:intergenic |
| ATTTAAAGAATTGCATGACA+TGG | 0.644214 | 6.4:-59309071 | MS.gene49936:CDS |
| GGTCTCGAACCTTGAATCCG+GGG | 0.645521 | 6.4:+59308038 | None:intergenic |
| GATGATACTGAAACTGGAGG+AGG | 0.647232 | 6.4:-59308106 | MS.gene49936:CDS |
| TCAAGGAAGCAACTTCGCAA+GGG | 0.652462 | 6.4:-59310402 | MS.gene49936:CDS |
| GCAAGACCACATGGTAGCGG+TGG | 0.655229 | 6.4:-59307716 | MS.gene49936:CDS |
| GGTTATTGTTGTGCCTCCTG+CGG | 0.655592 | 6.4:-59310078 | MS.gene49936:CDS |
| GATGACAATCCAGAATCCAA+AGG | 0.656967 | 6.4:-59308890 | MS.gene49936:intron |
| GAAGTTGGTCCTGTTGACGG+TGG | 0.657973 | 6.4:-59309019 | MS.gene49936:CDS |
| TGGCGACCATGGTCATTCTG+AGG | 0.659046 | 6.4:-59308203 | MS.gene49936:CDS |
| GGTTCTTCCAAGATGGTACG+TGG | 0.663592 | 6.4:-59308998 | MS.gene49936:CDS |
| TCCCGAGAAGACTCAAAAGG+AGG | 0.665620 | 6.4:+59307818 | None:intergenic |
| GAATGTCCGTAATCAGAAGG+AGG | 0.666170 | 6.4:+59310345 | None:intergenic |
| TACTTGCACCTACGACTATG+CGG | 0.668138 | 6.4:+59307648 | None:intergenic |
| CAGGATGATACTGAAACTGG+AGG | 0.670490 | 6.4:-59308109 | MS.gene49936:CDS |
| GATCCCACAATGACTTACCC+CGG | 0.670801 | 6.4:-59308055 | MS.gene49936:CDS |
| ATTCGTTGGCTAGAATGTCA+GGG | 0.682204 | 6.4:-59307497 | MS.gene49936:CDS |
| AAGAAATGGATTCAATAACA+AGG | 0.687617 | 6.4:-59307303 | MS.gene49936:CDS |
| TCTTCTCGGGATGAAGACAA+TGG | 0.691060 | 6.4:-59307806 | MS.gene49936:CDS |
| TCGGAACCACCGCTACCATG+TGG | 0.691197 | 6.4:+59307710 | None:intergenic |
| CTATGGTATTACAAGACTAG+GGG | 0.692533 | 6.4:-59308343 | MS.gene49936:CDS |
| TCAGAAGGAGGATCAGCAGG+TGG | 0.694739 | 6.4:+59310357 | None:intergenic |
| ACTTAGCCTCAGAATGACCA+TGG | 0.702405 | 6.4:+59308197 | None:intergenic |
| CAGCTGATGCAACTTGATGG+TGG | 0.702578 | 6.4:-59310099 | MS.gene49936:CDS |
| AACGGAACAAGAGCGTAGGG+TGG | 0.711248 | 6.4:-59307420 | MS.gene49936:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTAGAAATAAAAAAAATTA+GGG | - | chr6.4:59308616-59308635 | MS.gene49936:intron | 10.0% |
| !!! | AAGAAAAAACTTTTTTTTAT+TGG | + | chr6.4:59308311-59308330 | None:intergenic | 10.0% |
| !!! | AGAAAAAACTTTTTTTTATT+GGG | + | chr6.4:59308310-59308329 | None:intergenic | 10.0% |
| !! | CTGTAGAAATAAAAAAAATT+AGG | - | chr6.4:59308615-59308634 | MS.gene49936:intron | 15.0% |
| !! | GTAGAAATAAAAAAAATTAG+GGG | - | chr6.4:59308617-59308636 | MS.gene49936:intron | 15.0% |
| !! | TTAAAATCATCTGTAAAAAA+AGG | + | chr6.4:59309379-59309398 | None:intergenic | 15.0% |
| !!! | ATTTAGAACTTGATTTTTAT+CGG | - | chr6.4:59308811-59308830 | MS.gene49936:intron | 15.0% |
| !!! | CTTTTTTCAGAAATAATAAT+AGG | - | chr6.4:59308334-59308353 | MS.gene49936:CDS | 15.0% |
| !!! | GAAAAAACTTTTTTTTATTG+GGG | + | chr6.4:59308309-59308328 | None:intergenic | 15.0% |
| !! | TTTAATAAAATTACAGAAGC+TGG | - | chr6.4:59308853-59308872 | MS.gene49936:intron | 20.0% |
| !!! | AAAAAATGTGATTTTCACTA+CGG | - | chr6.4:59309398-59309417 | MS.gene49936:intron | 20.0% |
| !!! | GAGTTCTAAATTTGATTTAT+CGG | - | chr6.4:59309525-59309544 | MS.gene49936:intron | 20.0% |
| !!! | TTGTTTTACTAACCATTAAA+GGG | - | chr6.4:59309220-59309239 | MS.gene49936:intron | 20.0% |
| !!! | TTTGTTTTACTAACCATTAA+AGG | - | chr6.4:59309219-59309238 | MS.gene49936:intron | 20.0% |
| !!! | TTTTTTATTTCTACAGTTCA+GGG | + | chr6.4:59308611-59308630 | None:intergenic | 20.0% |
| !!! | TTTTTTTATTTCTACAGTTC+AGG | + | chr6.4:59308612-59308631 | None:intergenic | 20.0% |
| ! | AAACAACAAGCAATTGATAA+GGG | + | chr6.4:59307405-59307424 | None:intergenic | 25.0% |
| ! | AGAAAAAAGCTATAACAAAC+AGG | + | chr6.4:59309246-59309265 | None:intergenic | 25.0% |
| ! | ATTGTATCTTATACAGATGT+TGG | - | chr6.4:59309819-59309838 | MS.gene49936:intron | 25.0% |
| ! | ATTGTGTTAAAGTAATTCGT+TGG | - | chr6.4:59310531-59310550 | MS.gene49936:CDS | 25.0% |
| ! | ATTTAAAGAATTGCATGACA+TGG | - | chr6.4:59308971-59308990 | MS.gene49936:CDS | 25.0% |
| ! | TGATATTATATCCAACAAGA+GGG | - | chr6.4:59310715-59310734 | MS.gene49936:intron | 25.0% |
| !! | AAGAAATGGATTCAATAACA+AGG | - | chr6.4:59310739-59310758 | MS.gene49936:intron | 25.0% |
| !! | TATATTTTATTGGAAGCCTA+AGG | - | chr6.4:59308272-59308291 | MS.gene49936:CDS | 25.0% |
| AAAAGGAAACATAAGACTGA+GGG | + | chr6.4:59308374-59308393 | None:intergenic | 30.0% | |
| AACTATGGTATTACAAGACT+AGG | - | chr6.4:59309697-59309716 | MS.gene49936:intron | 30.0% | |
| AATTGACATGAATGCTAAAC+AGG | - | chr6.4:59309914-59309933 | MS.gene49936:intron | 30.0% | |
| ACATTAAGGGATTCAAACTA+TGG | - | chr6.4:59309682-59309701 | MS.gene49936:intron | 30.0% | |
| ACTATGGTATTACAAGACTA+GGG | - | chr6.4:59309698-59309717 | MS.gene49936:intron | 30.0% | |
| ATACTCAAAGTTCTCATCTA+AGG | + | chr6.4:59310513-59310532 | None:intergenic | 30.0% | |
| ATAGGATATATTTGAGCTTC+AGG | - | chr6.4:59308928-59308947 | MS.gene49936:CDS | 30.0% | |
| CTGATATTATATCCAACAAG+AGG | - | chr6.4:59310714-59310733 | MS.gene49936:intron | 30.0% | |
| GAAACAACAAGCAATTGATA+AGG | + | chr6.4:59307406-59307425 | None:intergenic | 30.0% | |
| GTAAAGTTACTGGAATACTT+GGG | - | chr6.4:59307986-59308005 | MS.gene49936:CDS | 30.0% | |
| GTCATATGAAGAAAGAGTTT+AGG | - | chr6.4:59310567-59310586 | MS.gene49936:CDS | 30.0% | |
| TAAAGGAGAACCGTTTATTA+AGG | + | chr6.4:59310468-59310487 | None:intergenic | 30.0% | |
| TAAATATAGCGAAAGATGCT+CGG | - | chr6.4:59308886-59308905 | MS.gene49936:intron | 30.0% | |
| TTCATGTCAATTGATGAAGT+CGG | + | chr6.4:59309906-59309925 | None:intergenic | 30.0% | |
| ! | AAGGACTCGAAAAAATTTTC+CGG | - | chr6.4:59307601-59307620 | MS.gene49936:CDS | 30.0% |
| ! | ATAAAATATAGAGCGCTTCA+CGG | + | chr6.4:59308262-59308281 | None:intergenic | 30.0% |
| ! | CTTGCACAGAATATTCTTTT+CGG | - | chr6.4:59309796-59309815 | MS.gene49936:intron | 30.0% |
| ! | GTTTTTCTCTAAATCATGAG+AGG | + | chr6.4:59310303-59310322 | None:intergenic | 30.0% |
| ! | TGATTTTTATCGGATGACAT+TGG | - | chr6.4:59308821-59308840 | MS.gene49936:intron | 30.0% |
| ! | TTAACATGATAAGCTCCTTT+TGG | - | chr6.4:59309553-59309572 | MS.gene49936:intron | 30.0% |
| ! | TTTCTGTGTTTCTACCATTA+AGG | - | chr6.4:59308111-59308130 | MS.gene49936:CDS | 30.0% |
| !! | AAGCACAAGTTGTTTTGTAT+TGG | + | chr6.4:59309428-59309447 | None:intergenic | 30.0% |
| !! | TGAAGCGCTCTATATTTTAT+TGG | - | chr6.4:59308262-59308281 | MS.gene49936:CDS | 30.0% |
| !!! | ACCACAGCAATTTTTTGTAT+CGG | + | chr6.4:59310093-59310112 | None:intergenic | 30.0% |
| !!! | TTTTTTTTATTGGGGTACCA+TGG | + | chr6.4:59308301-59308320 | None:intergenic | 30.0% |
| AAACAGGATGATACTGAAAC+TGG | - | chr6.4:59309930-59309949 | MS.gene49936:intron | 35.0% | |
| AAAGTTGGAGTTGTTGATCA+TGG | - | chr6.4:59307919-59307938 | MS.gene49936:CDS | 35.0% | |
| AACAGCAAACAACAATAAGG+GGG | + | chr6.4:59308065-59308084 | None:intergenic | 35.0% | |
| ACCAACAGCAAACAACAATA+AGG | + | chr6.4:59308068-59308087 | None:intergenic | 35.0% | |
| ACGTTGTAGGTGAAATTGAT+TGG | - | chr6.4:59308650-59308669 | MS.gene49936:intron | 35.0% | |
| AGAGAAATAGTTCCAACCTT+TGG | + | chr6.4:59309171-59309190 | None:intergenic | 35.0% | |
| ATAACAAACAGGCCCTTTAA+TGG | + | chr6.4:59309235-59309254 | None:intergenic | 35.0% | |
| ATCAGCTTTCTCAATAGCAA+GGG | + | chr6.4:59309117-59309136 | None:intergenic | 35.0% | |
| CAACAGCAAACAACAATAAG+GGG | + | chr6.4:59308066-59308085 | None:intergenic | 35.0% | |
| CAGAAACAACATTCAGATCA+AGG | + | chr6.4:59310178-59310197 | None:intergenic | 35.0% | |
| CAGGATGACTGAAAAGAAAA+AGG | - | chr6.4:59307582-59307601 | MS.gene49936:CDS | 35.0% | |
| CCAACAGCAAACAACAATAA+GGG | + | chr6.4:59308067-59308086 | None:intergenic | 35.0% | |
| CGAAAAGAATATTCTGTGCA+AGG | + | chr6.4:59309798-59309817 | None:intergenic | 35.0% | |
| CGTTGTAGGTGAAATTGATT+GGG | - | chr6.4:59308651-59308670 | MS.gene49936:intron | 35.0% | |
| CTATGGTATTACAAGACTAG+GGG | - | chr6.4:59309699-59309718 | MS.gene49936:intron | 35.0% | |
| CTATTGAGAAAGCTGATGAA+TGG | - | chr6.4:59309120-59309139 | MS.gene49936:CDS | 35.0% | |
| GAAAAGGAAACATAAGACTG+AGG | + | chr6.4:59308375-59308394 | None:intergenic | 35.0% | |
| GAACTCAAACAGAAACAGAA+AGG | + | chr6.4:59308708-59308727 | None:intergenic | 35.0% | |
| GCTCTTCATCATGAAAAAGT+TGG | - | chr6.4:59307904-59307923 | MS.gene49936:CDS | 35.0% | |
| GGTAAAGTTACTGGAATACT+TGG | - | chr6.4:59307985-59308004 | MS.gene49936:CDS | 35.0% | |
| TAACACACACACATCAGAAA+AGG | + | chr6.4:59309194-59309213 | None:intergenic | 35.0% | |
| TATGCAGTGAATCTTCTCAA+GGG | - | chr6.4:59307848-59307867 | MS.gene49936:CDS | 35.0% | |
| TCAAACAGAAACAGAAAGGA+AGG | + | chr6.4:59308704-59308723 | None:intergenic | 35.0% | |
| TCACATGTATCGTTCCTTAA+TGG | + | chr6.4:59308128-59308147 | None:intergenic | 35.0% | |
| TGGATTCAATAACAAGGTTG+TGG | - | chr6.4:59310745-59310764 | MS.gene49936:intron | 35.0% | |
| TGTGACAGCACCTTAATAAA+CGG | - | chr6.4:59310455-59310474 | MS.gene49936:CDS | 35.0% | |
| TTAGGCTGAAATTGCTTACA+TGG | - | chr6.4:59310585-59310604 | MS.gene49936:CDS | 35.0% | |
| TTGAGACAACATACATCAAC+TGG | + | chr6.4:59308181-59308200 | None:intergenic | 35.0% | |
| TTTGAATGTCCGTAATCAGA+AGG | + | chr6.4:59307703-59307722 | None:intergenic | 35.0% | |
| ! | AAAATCCTCCTCTGATCTTT+TGG | + | chr6.4:59309759-59309778 | None:intergenic | 35.0% |
| ! | AAAGATTTTGCACCTTGCTT+GGG | - | chr6.4:59310031-59310050 | MS.gene49936:intron | 35.0% |
| ! | AACTGCTTTGCATTTGAAAC+AGG | + | chr6.4:59309334-59309353 | None:intergenic | 35.0% |
| ! | ATAACAAGGATCCTAGTCTT+TGG | - | chr6.4:59307821-59307840 | MS.gene49936:CDS | 35.0% |
| ! | CTGTTTGAGTTCTTCTTTCT+TGG | - | chr6.4:59308716-59308735 | MS.gene49936:intron | 35.0% |
| ! | GATGAAGAGCACATTCAATA+TGG | + | chr6.4:59307894-59307913 | None:intergenic | 35.0% |
| ! | GTAACTTCTGAGGACATTAA+GGG | - | chr6.4:59309669-59309688 | MS.gene49936:intron | 35.0% |
| ! | TAAAATATAGAGCGCTTCAC+GGG | + | chr6.4:59308261-59308280 | None:intergenic | 35.0% |
| ! | TACCAATATCTCAACGCTTT+TGG | + | chr6.4:59309877-59309896 | None:intergenic | 35.0% |
| ! | TCAAAGCACTCTGGAAAAAA+TGG | - | chr6.4:59307442-59307461 | MS.gene49936:CDS | 35.0% |
| !! | CTTCATAAGTTTCTGAAGTC+CGG | - | chr6.4:59307499-59307518 | MS.gene49936:CDS | 35.0% |
| !! | GCTTACATGGTTTAGTTTGA+GGG | - | chr6.4:59310598-59310617 | MS.gene49936:CDS | 35.0% |
| !! | TCTTTTGGAAACACACAAAC+AGG | + | chr6.4:59309744-59309763 | None:intergenic | 35.0% |
| !! | TGCTTACATGGTTTAGTTTG+AGG | - | chr6.4:59310597-59310616 | MS.gene49936:CDS | 35.0% |
| !!! | AGCAATTTTTTGTATCGGCA+CGG | + | chr6.4:59310088-59310107 | None:intergenic | 35.0% |
| AAAAACCTAGCAAGACCACA+TGG | - | chr6.4:59310317-59310336 | MS.gene49936:CDS | 40.0% | |
| AAACCTGTTAGAGACTGAGA+AGG | + | chr6.4:59308506-59308525 | None:intergenic | 40.0% | |
| AAGAATATTCTGTGCAAGGC+TGG | + | chr6.4:59309794-59309813 | None:intergenic | 40.0% | |
| AATGCCAAACGTAACTTCTG+AGG | - | chr6.4:59309659-59309678 | MS.gene49936:intron | 40.0% | |
| ACAATCCAGAATCCAAAGGT+TGG | - | chr6.4:59309156-59309175 | MS.gene49936:CDS | 40.0% | |
| ATCTAAGGAGAACGAACCAT+CGG | + | chr6.4:59310498-59310517 | None:intergenic | 40.0% | |
| ATGCAGTGAATCTTCTCAAG+GGG | - | chr6.4:59307849-59307868 | MS.gene49936:CDS | 40.0% | |
| ATGTCCTCAGAAGTTACGTT+TGG | + | chr6.4:59309666-59309685 | None:intergenic | 40.0% | |
| ATTACGGACATTCAAACTCC+TGG | - | chr6.4:59307707-59307726 | MS.gene49936:CDS | 40.0% | |
| ATTGCATGACATGGTACAAG+AGG | - | chr6.4:59308980-59308999 | MS.gene49936:CDS | 40.0% | |
| CAAGGTGCAAAATCTTTCCA+AGG | + | chr6.4:59310028-59310047 | None:intergenic | 40.0% | |
| CAGGTGGTACAAATCGAATA+GGG | + | chr6.4:59307672-59307691 | None:intergenic | 40.0% | |
| CATCAGCTTTCTCAATAGCA+AGG | + | chr6.4:59309118-59309137 | None:intergenic | 40.0% | |
| CCATCTCTTCGATGATAACA+AGG | - | chr6.4:59307807-59307826 | MS.gene49936:CDS | 40.0% | |
| CGGACTTCAGAAACTTATGA+AGG | + | chr6.4:59307501-59307520 | None:intergenic | 40.0% | |
| CTCTTCAAACACAAACTTGC+AGG | + | chr6.4:59309604-59309623 | None:intergenic | 40.0% | |
| CTGCAAGTTTGTGTTTGAAG+AGG | - | chr6.4:59309602-59309621 | MS.gene49936:intron | 40.0% | |
| GATACATGTGAGTCGTATCT+AGG | - | chr6.4:59308137-59308156 | MS.gene49936:CDS | 40.0% | |
| GATGACAATCCAGAATCCAA+AGG | - | chr6.4:59309152-59309171 | MS.gene49936:CDS | 40.0% | |
| GCACATTTCTTCAGAAAAGC+AGG | - | chr6.4:59307563-59307582 | MS.gene49936:CDS | 40.0% | |
| GCCGATACAAAAAATTGCTG+TGG | - | chr6.4:59310089-59310108 | MS.gene49936:CDS | 40.0% | |
| GCTAAACTGGAAAAGGAAGT+TGG | - | chr6.4:59309008-59309027 | MS.gene49936:CDS | 40.0% | |
| GGGAAACTTGTATACGTTGT+AGG | - | chr6.4:59308637-59308656 | MS.gene49936:intron | 40.0% | |
| GTATGCAGTGAATCTTCTCA+AGG | - | chr6.4:59307847-59307866 | MS.gene49936:CDS | 40.0% | |
| GTGCTTGTCTTTATCAAAGC+AGG | + | chr6.4:59307547-59307566 | None:intergenic | 40.0% | |
| GTGTGGATGTACTATGCTAT+AGG | - | chr6.4:59308910-59308929 | MS.gene49936:CDS | 40.0% | |
| GTGTGTTTCCAAAAGATCAG+AGG | - | chr6.4:59309748-59309767 | MS.gene49936:intron | 40.0% | |
| TACAACATCCATAACACAGC+AGG | + | chr6.4:59308028-59308047 | None:intergenic | 40.0% | |
| TAGTTCCAACCTTTGGATTC+TGG | + | chr6.4:59309164-59309183 | None:intergenic | 40.0% | |
| TATTCCAGTAACTTTACCGC+AGG | + | chr6.4:59307983-59308002 | None:intergenic | 40.0% | |
| TGAGAAAGCTGATGAATGGT+TGG | - | chr6.4:59309124-59309143 | MS.gene49936:CDS | 40.0% | |
| TGTTGGTATAGTGACGCTTT+CGG | - | chr6.4:59308081-59308100 | MS.gene49936:CDS | 40.0% | |
| TGTTTCCAAAAGATCAGAGG+AGG | - | chr6.4:59309751-59309770 | MS.gene49936:intron | 40.0% | |
| TTTCTTCACCTGCTGTGTTA+TGG | - | chr6.4:59308017-59308036 | MS.gene49936:CDS | 40.0% | |
| ! | AATTCGTTGGCTAGAATGTC+AGG | - | chr6.4:59310544-59310563 | MS.gene49936:CDS | 40.0% |
| ! | AGCAGAGTTTTTACAGATCC+AGG | + | chr6.4:59307728-59307747 | None:intergenic | 40.0% |
| ! | AGTGCTTTGAACATGAGAAC+TGG | + | chr6.4:59307432-59307451 | None:intergenic | 40.0% |
| ! | ATTCGTTGGCTAGAATGTCA+GGG | - | chr6.4:59310545-59310564 | MS.gene49936:CDS | 40.0% |
| ! | CCTTGTTATCATCGAAGAGA+TGG | + | chr6.4:59307810-59307829 | None:intergenic | 40.0% |
| ! | CGTAACTTCTGAGGACATTA+AGG | - | chr6.4:59309668-59309687 | MS.gene49936:intron | 40.0% |
| ! | GAAAGATTTTGCACCTTGCT+TGG | - | chr6.4:59310030-59310049 | MS.gene49936:intron | 40.0% |
| ! | TCGAAAAAATTTTCCGGCCT+CGG | - | chr6.4:59307607-59307626 | MS.gene49936:CDS | 40.0% |
| ! | TTCTCATGTTCAAAGCACTC+TGG | - | chr6.4:59307433-59307452 | MS.gene49936:CDS | 40.0% |
| !! | ATAAGTTTCTGAAGTCCGGT+CGG | - | chr6.4:59307503-59307522 | MS.gene49936:CDS | 40.0% |
| !! | ATGGTTTAGTTTGAGGGCAA+CGG | - | chr6.4:59310604-59310623 | MS.gene49936:CDS | 40.0% |
| !! | CACCAAAAGCGTTGAGATAT+TGG | - | chr6.4:59309872-59309891 | MS.gene49936:intron | 40.0% |
| !! | CCCTTATTGTTGTTTGCTGT+TGG | - | chr6.4:59308064-59308083 | MS.gene49936:CDS | 40.0% |
| AACAACAATAAGGGGGAGGA+AGG | + | chr6.4:59308058-59308077 | None:intergenic | 45.0% | |
| AACTTCTTCGTTTGGTCTCC+AGG | + | chr6.4:59310360-59310379 | None:intergenic | 45.0% | |
| AAGACGACACATTCTGTAGG+AGG | - | chr6.4:59307767-59307786 | MS.gene49936:CDS | 45.0% | |
| AAGGAACGTTACTGAGAGAG+AGG | + | chr6.4:59308487-59308506 | None:intergenic | 45.0% | |
| AAGGTCTCGAACCTTGAATC+CGG | + | chr6.4:59310009-59310028 | None:intergenic | 45.0% | |
| AATATTCTGTGCAAGGCTGG+AGG | + | chr6.4:59309791-59309810 | None:intergenic | 45.0% | |
| AATCCGGGGTAAGTCATTGT+GGG | + | chr6.4:59309993-59310012 | None:intergenic | 45.0% | |
| AATGACTTACCCCGGATTCA+AGG | - | chr6.4:59309995-59310014 | MS.gene49936:intron | 45.0% | |
| ACAACAATAAGGGGGAGGAA+GGG | + | chr6.4:59308057-59308076 | None:intergenic | 45.0% | |
| ACAAGAGGCAAAGGCTAAAC+TGG | - | chr6.4:59308995-59309014 | MS.gene49936:CDS | 45.0% | |
| ACAGAGTTTCTGCACATCAC+TGG | + | chr6.4:59309093-59309112 | None:intergenic | 45.0% | |
| ACAGCAGGAACTTCTTCGTT+TGG | + | chr6.4:59310368-59310387 | None:intergenic | 45.0% | |
| ACTTAGCCTCAGAATGACCA+TGG | + | chr6.4:59309848-59309867 | None:intergenic | 45.0% | |
| AGCAAACAACAATAAGGGGG+AGG | + | chr6.4:59308062-59308081 | None:intergenic | 45.0% | |
| AGTTGACCTGCCAAACTACT+CGG | + | chr6.4:59310680-59310699 | None:intergenic | 45.0% | |
| CAGGATGATACTGAAACTGG+AGG | - | chr6.4:59309933-59309952 | MS.gene49936:intron | 45.0% | |
| CCAAAGACGACACATTCTGT+AGG | - | chr6.4:59307764-59307783 | MS.gene49936:CDS | 45.0% | |
| CCTACAGAATGTGTCGTCTT+TGG | + | chr6.4:59307767-59307786 | None:intergenic | 45.0% | |
| CTGCATACCAACCAAAGACT+AGG | + | chr6.4:59307835-59307854 | None:intergenic | 45.0% | |
| GAAGGAGAATACAAACCCAG+TGG | + | chr6.4:59308686-59308705 | None:intergenic | 45.0% | |
| GAATGTCCGTAATCAGAAGG+AGG | + | chr6.4:59307700-59307719 | None:intergenic | 45.0% | |
| GATAGGGCGAGAATGTGAAA+AGG | + | chr6.4:59308391-59308410 | None:intergenic | 45.0% | |
| GATCGATGATCCGAGTAGTT+TGG | - | chr6.4:59310667-59310686 | MS.gene49936:intron | 45.0% | |
| GATGATACTGAAACTGGAGG+AGG | - | chr6.4:59309936-59309955 | MS.gene49936:intron | 45.0% | |
| GCAGGTGGTACAAATCGAAT+AGG | + | chr6.4:59307673-59307692 | None:intergenic | 45.0% | |
| GCTGATCCTCCTTCTGATTA+CGG | - | chr6.4:59307691-59307710 | MS.gene49936:CDS | 45.0% | |
| GGATTCTGGATTGTCATCAG+TGG | + | chr6.4:59309150-59309169 | None:intergenic | 45.0% | |
| GGCAAAGGCTAAACTGGAAA+AGG | - | chr6.4:59309001-59309020 | MS.gene49936:CDS | 45.0% | |
| GTGAGTTCTTCGTTCAAGTC+AGG | + | chr6.4:59310203-59310222 | None:intergenic | 45.0% | |
| GTTCCTTCTCAGTCTCTAAC+AGG | - | chr6.4:59308500-59308519 | MS.gene49936:intron | 45.0% | |
| TAATCAGAAGGAGGATCAGC+AGG | + | chr6.4:59307691-59307710 | None:intergenic | 45.0% | |
| TACTTGCACCTACGACTATG+CGG | + | chr6.4:59310397-59310416 | None:intergenic | 45.0% | |
| TATACAGATGTTGGCGACCA+TGG | - | chr6.4:59309828-59309847 | MS.gene49936:intron | 45.0% | |
| TCAAGGAAGCAACTTCGCAA+GGG | - | chr6.4:59307640-59307659 | MS.gene49936:CDS | 45.0% | |
| TCATCCCGAGAAGACTCAAA+AGG | + | chr6.4:59310230-59310249 | None:intergenic | 45.0% | |
| TCCAACAAGAGGGCAAGAAA+TGG | - | chr6.4:59310725-59310744 | MS.gene49936:intron | 45.0% | |
| TCCATTTCTTGCCCTCTTGT+TGG | + | chr6.4:59310729-59310748 | None:intergenic | 45.0% | |
| TCTAAGGAGAACGAACCATC+GGG | + | chr6.4:59310497-59310516 | None:intergenic | 45.0% | |
| TCTCAATAGCGCTGCTATAG+CGG | - | chr6.4:59308195-59308214 | MS.gene49936:CDS | 45.0% | |
| TCTGCACATCACTGGCAATA+GGG | + | chr6.4:59309085-59309104 | None:intergenic | 45.0% | |
| TCTTCTCGGGATGAAGACAA+TGG | - | chr6.4:59310236-59310255 | MS.gene49936:CDS | 45.0% | |
| TGACATGGTACAAGAGGCAA+AGG | - | chr6.4:59308986-59309005 | MS.gene49936:CDS | 45.0% | |
| TTCGTTTGGTCTCCAGGTTT+CGG | + | chr6.4:59310354-59310373 | None:intergenic | 45.0% | |
| TTCTGCACATCACTGGCAAT+AGG | + | chr6.4:59309086-59309105 | None:intergenic | 45.0% | |
| TTGAGCTTCAGGCTTCTGAA+CGG | - | chr6.4:59308939-59308958 | MS.gene49936:CDS | 45.0% | |
| ! | AAGGAAGTTGGTCCTGTTGA+CGG | - | chr6.4:59309020-59309039 | MS.gene49936:CDS | 45.0% |
| ! | CAAGGATCCTAGTCTTTGGT+TGG | - | chr6.4:59307825-59307844 | MS.gene49936:CDS | 45.0% |
| ! | GAAGAAGTTCCTTTTCCGAC+CGG | + | chr6.4:59307521-59307540 | None:intergenic | 45.0% |
| !! | CTCCTCCTTTTGAGTCTTCT+CGG | - | chr6.4:59310222-59310241 | MS.gene49936:CDS | 45.0% |
| !! | TCCTCCTTTTGAGTCTTCTC+GGG | - | chr6.4:59310223-59310242 | MS.gene49936:CDS | 45.0% |
| AACACAAACTTGCAGGCAGC+AGG | + | chr6.4:59309597-59309616 | None:intergenic | 50.0% | |
| AACGATCAAGCCTAGCCATC+CGG | - | chr6.4:59310121-59310140 | MS.gene49936:CDS | 50.0% | |
| AAGAACAAGGCTGCCTTGAG+GGG | - | chr6.4:59310057-59310076 | MS.gene49936:CDS | 50.0% | |
| ACTTGCACCTACGACTATGC+GGG | + | chr6.4:59310396-59310415 | None:intergenic | 50.0% | |
| AGGTCTCGAACCTTGAATCC+GGG | + | chr6.4:59310008-59310027 | None:intergenic | 50.0% | |
| CAAGAACAAGGCTGCCTTGA+GGG | - | chr6.4:59310056-59310075 | MS.gene49936:intron | 50.0% | |
| CAATGGTTGCACTTTGCAGC+AGG | - | chr6.4:59310253-59310272 | MS.gene49936:CDS | 50.0% | |
| CAGCTGATGCAACTTGATGG+TGG | - | chr6.4:59307943-59307962 | MS.gene49936:CDS | 50.0% | |
| CTAGCAAGACCACATGGTAG+CGG | - | chr6.4:59310323-59310342 | MS.gene49936:CDS | 50.0% | |
| CTCAAGGAAGCAACTTCGCA+AGG | - | chr6.4:59307639-59307658 | MS.gene49936:CDS | 50.0% | |
| CTTGCTTGGGCTCAAGAACA+AGG | - | chr6.4:59310044-59310063 | MS.gene49936:intron | 50.0% | |
| CTTGTTCTTGAGCCCAAGCA+AGG | + | chr6.4:59310046-59310065 | None:intergenic | 50.0% | |
| GAACCATCGGGTGCATGTAA+AGG | + | chr6.4:59310485-59310504 | None:intergenic | 50.0% | |
| GAAGAGGGAAGCTGCGATTA+GGG | + | chr6.4:59308446-59308465 | None:intergenic | 50.0% | |
| GAATCCGGGGTAAGTCATTG+TGG | + | chr6.4:59309994-59310013 | None:intergenic | 50.0% | |
| GACAATGCCACGTACCATCT+TGG | + | chr6.4:59309054-59309073 | None:intergenic | 50.0% | |
| GATCCCACAATGACTTACCC+CGG | - | chr6.4:59309987-59310006 | MS.gene49936:intron | 50.0% | |
| GATGATCCGAGTAGTTTGGC+AGG | - | chr6.4:59310671-59310690 | MS.gene49936:intron | 50.0% | |
| GCATAGTCGTAGGTGCAAGT+AGG | - | chr6.4:59310396-59310415 | MS.gene49936:CDS | 50.0% | |
| GGACAGCTGATGCAACTTGA+TGG | - | chr6.4:59307940-59307959 | MS.gene49936:CDS | 50.0% | |
| GGATTCAAGGTTCGAGACCT+TGG | - | chr6.4:59310008-59310027 | MS.gene49936:intron | 50.0% | |
| GGTTATTGTTGTGCCTCCTG+CGG | - | chr6.4:59307964-59307983 | MS.gene49936:CDS | 50.0% | |
| GGTTCTTCCAAGATGGTACG+TGG | - | chr6.4:59309044-59309063 | MS.gene49936:CDS | 50.0% | |
| TCAAGAACAAGGCTGCCTTG+AGG | - | chr6.4:59310055-59310074 | MS.gene49936:intron | 50.0% | |
| TCCAGTAACTTTACCGCAGG+AGG | + | chr6.4:59307980-59307999 | None:intergenic | 50.0% | |
| TCCCGAGAAGACTCAAAAGG+AGG | + | chr6.4:59310227-59310246 | None:intergenic | 50.0% | |
| TCTCCTTTACATGCACCCGA+TGG | - | chr6.4:59310479-59310498 | MS.gene49936:CDS | 50.0% | |
| TCTTCTCAAGGGGACTCATG+TGG | - | chr6.4:59307859-59307878 | MS.gene49936:CDS | 50.0% | |
| TGAACCCTCTGTGAGCCAAA+AGG | + | chr6.4:59309571-59309590 | None:intergenic | 50.0% | |
| TGACGGTGGTTCTTCCAAGA+TGG | - | chr6.4:59309037-59309056 | MS.gene49936:CDS | 50.0% | |
| TGTGGGATCGATCTCCAGTT+TGG | + | chr6.4:59309976-59309995 | None:intergenic | 50.0% | |
| TTGGAAGAACCACCGTCAAC+AGG | + | chr6.4:59309035-59309054 | None:intergenic | 50.0% | |
| TTGGAAGCCTAAGGATGCCA+TGG | - | chr6.4:59308281-59308300 | MS.gene49936:CDS | 50.0% | |
| ! | AAATGCACCGATCGCTCTTC+CGG | + | chr6.4:59310143-59310162 | None:intergenic | 50.0% |
| ! | ATTGGGCTAGATCTGCCACT+GGG | - | chr6.4:59308668-59308687 | MS.gene49936:intron | 50.0% |
| !! | TTCTGAAGTCCGGTCGGAAA+AGG | - | chr6.4:59307509-59307528 | MS.gene49936:CDS | 50.0% |
| !!! | AAGCTCCTTTTGGCTCACAG+AGG | - | chr6.4:59309563-59309582 | MS.gene49936:intron | 50.0% |
| !!! | AGCTCCTTTTGGCTCACAGA+GGG | - | chr6.4:59309564-59309583 | MS.gene49936:intron | 50.0% |
| ACTATGCGGGAGTCAACAGC+AGG | + | chr6.4:59310383-59310402 | None:intergenic | 55.0% | |
| AGATGAGAACGCGGCGTGAT+AGG | + | chr6.4:59308408-59308427 | None:intergenic | 55.0% | |
| CACTTTGCAGCAGGCTGTTG+AGG | - | chr6.4:59310262-59310281 | MS.gene49936:CDS | 55.0% | |
| CAGTGAACCAGGCTCCAAAC+TGG | - | chr6.4:59309959-59309978 | MS.gene49936:intron | 55.0% | |
| GATGAGAACGCGGCGTGATA+GGG | + | chr6.4:59308407-59308426 | None:intergenic | 55.0% | |
| GCCTCCTGCGGTAAAGTTAC+TGG | - | chr6.4:59307976-59307995 | MS.gene49936:CDS | 55.0% | |
| GCGAGAGTGAGATGAGAACG+CGG | + | chr6.4:59308417-59308436 | None:intergenic | 55.0% | |
| GGAAGAGCGATCGGTGCATT+TGG | - | chr6.4:59310142-59310161 | MS.gene49936:CDS | 55.0% | |
| GGAAGAGGGAAGCTGCGATT+AGG | + | chr6.4:59308447-59308466 | None:intergenic | 55.0% | |
| GGTCTCGAACCTTGAATCCG+GGG | + | chr6.4:59310007-59310026 | None:intergenic | 55.0% | |
| TAGCCATCCGGAAGAGCGAT+CGG | - | chr6.4:59310133-59310152 | MS.gene49936:CDS | 55.0% | |
| TCAGAAGGAGGATCAGCAGG+TGG | + | chr6.4:59307688-59307707 | None:intergenic | 55.0% | |
| TGGCGACCATGGTCATTCTG+AGG | - | chr6.4:59309839-59309858 | MS.gene49936:intron | 55.0% | |
| TGGTACGTGGCATTGTCAGC+AGG | - | chr6.4:59309057-59309076 | MS.gene49936:CDS | 55.0% | |
| TTCCCTCTTCCTCTCAGTCG+CGG | - | chr6.4:59308456-59308475 | MS.gene49936:CDS | 55.0% | |
| ! | AACGGAACAAGAGCGTAGGG+TGG | - | chr6.4:59310622-59310641 | MS.gene49936:intron | 55.0% |
| ! | CGCTACCATGTGGTCTTGCT+AGG | + | chr6.4:59310325-59310344 | None:intergenic | 55.0% |
| ! | GAAGTTGGTCCTGTTGACGG+TGG | - | chr6.4:59309023-59309042 | MS.gene49936:CDS | 55.0% |
| ! | GATTGGGCTAGATCTGCCAC+TGG | - | chr6.4:59308667-59308686 | MS.gene49936:intron | 55.0% |
| ! | GGCAACGGAACAAGAGCGTA+GGG | - | chr6.4:59310619-59310638 | MS.gene49936:intron | 55.0% |
| ! | GTTGACTCCCGCATAGTCGT+AGG | - | chr6.4:59310386-59310405 | MS.gene49936:CDS | 55.0% |
| ! | TCGATCTCCAGTTTGGAGCC+TGG | + | chr6.4:59309969-59309988 | None:intergenic | 55.0% |
| ! | TGGGGTACCATGGCATCCTT+AGG | + | chr6.4:59308291-59308310 | None:intergenic | 55.0% |
| !! | TCCTTGAGCACTGATTGCCG+AGG | + | chr6.4:59307627-59307646 | None:intergenic | 55.0% |
| ACTGGAGGAGGCAGTGAACC+AGG | - | chr6.4:59309948-59309967 | MS.gene49936:intron | 60.0% | |
| AGCGAAAGATGCTCGGCGTG+TGG | - | chr6.4:59308893-59308912 | MS.gene49936:CDS | 60.0% | |
| GATCGCTCTTCCGGATGGCT+AGG | + | chr6.4:59310134-59310153 | None:intergenic | 60.0% | |
| GCCTCGGCAATCAGTGCTCA+AGG | - | chr6.4:59307623-59307642 | MS.gene49936:CDS | 60.0% | |
| GTAGCGGTGGTTCCGAAACC+TGG | - | chr6.4:59310339-59310358 | MS.gene49936:CDS | 60.0% | |
| TCGGAACCACCGCTACCATG+TGG | + | chr6.4:59310335-59310354 | None:intergenic | 60.0% | |
| ! | GGGCAACGGAACAAGAGCGT+AGG | - | chr6.4:59310618-59310637 | MS.gene49936:intron | 60.0% |
| ! | TAGAGCGCTTCACGGGCCTA+CGG | + | chr6.4:59308254-59308273 | None:intergenic | 60.0% |
| !! | GCAAGACCACATGGTAGCGG+TGG | - | chr6.4:59310326-59310345 | MS.gene49936:CDS | 60.0% |
| !! | GCTGCTATAGCGGTGTTGCG+TGG | - | chr6.4:59308205-59308224 | MS.gene49936:CDS | 60.0% |
| !! | TGAGCACTGATTGCCGAGGC+CGG | + | chr6.4:59307623-59307642 | None:intergenic | 60.0% |
| ACGCCGCGACTGAGAGGAAG+AGG | + | chr6.4:59308462-59308481 | None:intergenic | 65.0% | |
| CGCCGCGACTGAGAGGAAGA+GGG | + | chr6.4:59308461-59308480 | None:intergenic | 65.0% | |
| CGGCACGGCAAAACCCCTCA+AGG | + | chr6.4:59310073-59310092 | None:intergenic | 65.0% | |
| GAGGAAACGCCGCGACTGAG+AGG | + | chr6.4:59308468-59308487 | None:intergenic | 65.0% | |
| GCCTACGGCATGCCAGTGCA+GGG | + | chr6.4:59308239-59308258 | None:intergenic | 65.0% | |
| ! | GCACCGATCGCTCTTCCGGA+TGG | + | chr6.4:59310139-59310158 | None:intergenic | 65.0% |
| !! | AGCGGTGTTGCGTGGCAGTG+TGG | - | chr6.4:59308213-59308232 | MS.gene49936:CDS | 65.0% |
| GGCCTACGGCATGCCAGTGC+AGG | + | chr6.4:59308240-59308259 | None:intergenic | 70.0% | |
| GTGGCAGTGTGGCCCTGCAC+TGG | - | chr6.4:59308224-59308243 | MS.gene49936:CDS | 70.0% | |
| ! | GCCCTGCACTGGCATGCCGT+AGG | - | chr6.4:59308235-59308254 | MS.gene49936:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 59307286 | 59310778 | 59307286 | ID=MS.gene49936 |
| chr6.4 | mRNA | 59307286 | 59310778 | 59307286 | ID=MS.gene49936.t1;Parent=MS.gene49936 |
| chr6.4 | exon | 59310767 | 59310778 | 59310767 | ID=MS.gene49936.t1.exon1;Parent=MS.gene49936.t1 |
| chr6.4 | CDS | 59310767 | 59310778 | 59310767 | ID=cds.MS.gene49936.t1;Parent=MS.gene49936.t1 |
| chr6.4 | exon | 59310057 | 59310631 | 59310057 | ID=MS.gene49936.t1.exon2;Parent=MS.gene49936.t1 |
| chr6.4 | CDS | 59310057 | 59310631 | 59310057 | ID=cds.MS.gene49936.t1;Parent=MS.gene49936.t1 |
| chr6.4 | exon | 59308891 | 59309195 | 59308891 | ID=MS.gene49936.t1.exon3;Parent=MS.gene49936.t1 |
| chr6.4 | CDS | 59308891 | 59309195 | 59308891 | ID=cds.MS.gene49936.t1;Parent=MS.gene49936.t1 |
| chr6.4 | exon | 59307286 | 59308481 | 59307286 | ID=MS.gene49936.t1.exon4;Parent=MS.gene49936.t1 |
| chr6.4 | CDS | 59307286 | 59308481 | 59307286 | ID=cds.MS.gene49936.t1;Parent=MS.gene49936.t1 |
| Gene Sequence |
| Protein sequence |
