Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50054.t1 | RHN61255.1 | 97.9 | 437 | 9 | 0 | 1 | 437 | 1 | 437 | 6.20E-245 | 856.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50054.t1 | Q9LN62 | 72.8 | 437 | 109 | 3 | 1 | 436 | 1 | 428 | 2.5e-178 | 626.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50054.t1 | A0A396IC16 | 97.9 | 437 | 9 | 0 | 1 | 437 | 1 | 437 | 4.5e-245 | 856.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056678 | MS.gene50054 | 0.807377 | 5.21E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50054.t1 | MTR_4g069260 | 97.712 | 437 | 10 | 0 | 1 | 437 | 1 | 437 | 0.0 | 889 |
| MS.gene50054.t1 | MTR_4g069300 | 84.703 | 438 | 66 | 1 | 1 | 437 | 1 | 438 | 0.0 | 765 |
| MS.gene50054.t1 | MTR_4g069350 | 80.963 | 436 | 75 | 2 | 1 | 435 | 1 | 429 | 0.0 | 723 |
| MS.gene50054.t1 | MTR_4g069420 | 79.310 | 435 | 82 | 1 | 1 | 435 | 1 | 427 | 0.0 | 699 |
| MS.gene50054.t1 | MTR_4g069430 | 80.000 | 435 | 72 | 2 | 1 | 435 | 1 | 420 | 0.0 | 691 |
| MS.gene50054.t1 | MTR_1g022025 | 73.409 | 440 | 101 | 3 | 1 | 436 | 1 | 428 | 0.0 | 676 |
| MS.gene50054.t1 | MTR_4g069390 | 82.073 | 357 | 58 | 2 | 80 | 435 | 1 | 352 | 0.0 | 607 |
| MS.gene50054.t1 | MTR_4g069410 | 68.657 | 67 | 21 | 0 | 1 | 67 | 1 | 67 | 3.51e-25 | 99.4 |
| MS.gene50054.t1 | MTR_4g069280 | 67.164 | 67 | 22 | 0 | 1 | 67 | 1 | 67 | 9.86e-25 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50054.t1 | AT1G19360 | 72.769 | 437 | 109 | 3 | 1 | 436 | 1 | 428 | 0.0 | 658 |
| MS.gene50054.t1 | AT1G19360 | 72.769 | 437 | 109 | 3 | 1 | 436 | 1 | 428 | 0.0 | 658 |
| MS.gene50054.t1 | AT1G75110 | 71.918 | 438 | 111 | 3 | 1 | 436 | 1 | 428 | 0.0 | 652 |
| MS.gene50054.t1 | AT1G75120 | 61.327 | 437 | 132 | 5 | 1 | 435 | 1 | 402 | 0.0 | 540 |
| MS.gene50054.t1 | AT1G70630 | 28.169 | 213 | 122 | 6 | 148 | 354 | 231 | 418 | 1.72e-13 | 72.8 |
| MS.gene50054.t1 | AT1G70630 | 28.169 | 213 | 122 | 6 | 148 | 354 | 262 | 449 | 1.89e-13 | 72.8 |
| MS.gene50054.t1 | AT1G70630 | 28.169 | 213 | 122 | 6 | 148 | 354 | 262 | 449 | 1.89e-13 | 72.8 |
| MS.gene50054.t1 | AT1G70630 | 28.169 | 213 | 122 | 6 | 148 | 354 | 447 | 634 | 2.48e-13 | 72.4 |
| MS.gene50054.t1 | AT1G70630 | 28.169 | 213 | 122 | 6 | 148 | 354 | 478 | 665 | 2.58e-13 | 72.4 |
| MS.gene50054.t1 | AT1G70630 | 28.169 | 213 | 122 | 6 | 148 | 354 | 399 | 586 | 2.60e-13 | 72.4 |
| MS.gene50054.t1 | AT1G70630 | 28.169 | 213 | 122 | 6 | 148 | 354 | 468 | 655 | 2.61e-13 | 72.4 |
Find 99 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCCTTCAATTGAGCTTT+TGG | 0.209327 | 4.2:+37390305 | MS.gene50054:CDS |
| TGAAAATAAAACCTGGGTTT+TGG | 0.224761 | 4.2:-37388266 | None:intergenic |
| ATGAGGATTGTTTCGCATTA+AGG | 0.231351 | 4.2:-37388107 | None:intergenic |
| TCCAATATCTTTGCCAGTCT+TGG | 0.235716 | 4.2:-37389784 | None:intergenic |
| TTCATTCGCGGAAGCTTATC+AGG | 0.249563 | 4.2:-37390549 | None:intergenic |
| GTAGTAATTGGAGTTCTTAT+TGG | 0.273331 | 4.2:+37388160 | MS.gene50054:CDS |
| TATACCAACTCTCTTGATAT+TGG | 0.305862 | 4.2:-37389884 | None:intergenic |
| CGTAAGCTGTCATGTTATTA+TGG | 0.320845 | 4.2:-37390179 | None:intergenic |
| AGGATATGGGTTTACAATTC+CGG | 0.324078 | 4.2:+37390261 | MS.gene50054:CDS |
| CTCTGCAAGCCGAAGCCTTT+CGG | 0.335447 | 4.2:-37389638 | None:intergenic |
| ACGCTCATACCATGAGGATA+TGG | 0.335819 | 4.2:+37390247 | MS.gene50054:CDS |
| CCCAAGACTGGCAAAGATAT+TGG | 0.338770 | 4.2:+37389783 | MS.gene50054:CDS |
| ATTGTTACCGCTGTAGTAAT+TGG | 0.339437 | 4.2:+37388148 | MS.gene50054:CDS |
| CCAATATCTTTGCCAGTCTT+GGG | 0.362824 | 4.2:-37389783 | None:intergenic |
| TAATTCACGTGAACAATTAC+CGG | 0.366362 | 4.2:-37390522 | None:intergenic |
| TCATGCTGCTAGAAGAACTA+TGG | 0.394162 | 4.2:+37390425 | MS.gene50054:CDS |
| CGACGAACCTGCGATGGGTT+GGG | 0.394380 | 4.2:+37390218 | MS.gene50054:CDS |
| TGAGGATTGTTTCGCATTAA+GGG | 0.394783 | 4.2:-37388106 | None:intergenic |
| GATGATGGTATTGACACTAT+TGG | 0.398863 | 4.2:+37389991 | MS.gene50054:CDS |
| GGAGGGAACCATGCTGTCTC+CGG | 0.406427 | 4.2:+37390021 | MS.gene50054:CDS |
| GTTGTTGAATATTATGTCAA+TGG | 0.415566 | 4.2:+37390576 | MS.gene50054:CDS |
| TCGACGAACCTGCGATGGGT+TGG | 0.436451 | 4.2:+37390217 | MS.gene50054:CDS |
| GGGAGTTGACCGAAAGGCTT+CGG | 0.438259 | 4.2:+37389629 | MS.gene50054:CDS |
| GGTTACCAATCTGAGCCATC+AGG | 0.443252 | 4.2:-37390624 | None:intergenic |
| ATAGTGTCAATACCATCATC+TGG | 0.444142 | 4.2:-37389988 | None:intergenic |
| CCGTCACACCCTGGTTATGA+AGG | 0.446141 | 4.2:+37390399 | MS.gene50054:CDS |
| AATCGTCGCATCCATGTTGT+TGG | 0.454605 | 4.2:+37388241 | MS.gene50054:CDS |
| GTTATTATGGCCATCGCTCA+TGG | 0.461921 | 4.2:-37390166 | None:intergenic |
| CATAATAACATGACAGCTTA+CGG | 0.462428 | 4.2:+37390180 | MS.gene50054:CDS |
| ATACAATGTCAACATCTGAT+AGG | 0.466825 | 4.2:-37390095 | None:intergenic |
| CTCATTCTCTACGCAAATCA+AGG | 0.468828 | 4.2:+37388125 | MS.gene50054:CDS |
| AGCTCAATTGAAGGAATGGT+TGG | 0.470800 | 4.2:-37390300 | None:intergenic |
| CATGTTAAAATCAGAGTTTG+TGG | 0.477132 | 4.2:+37389567 | MS.gene50054:CDS |
| TTGTTGAATATTATGTCAAT+GGG | 0.480177 | 4.2:+37390577 | MS.gene50054:CDS |
| AAAGAGTTCCTCGTTGAAAA+CGG | 0.480750 | 4.2:-37390373 | None:intergenic |
| CTTTCCCTGATGGCTCAGAT+TGG | 0.480932 | 4.2:+37390619 | MS.gene50054:CDS |
| CTTGATTTGCGTAGAGAATG+AGG | 0.482124 | 4.2:-37388124 | None:intergenic |
| TAAAGGAGATGCTCGAGGTC+TGG | 0.483638 | 4.2:+37389857 | MS.gene50054:CDS |
| TCAACAACTGCTTTCATTCG+CGG | 0.485251 | 4.2:-37390561 | None:intergenic |
| TAATCTCAGTAAATTGAAAC+CGG | 0.490101 | 4.2:+37390503 | MS.gene50054:CDS |
| TTGGTCCCATGCGACCTCCT+TGG | 0.491130 | 4.2:-37390349 | None:intergenic |
| CGCTCATACCATGAGGATAT+GGG | 0.494439 | 4.2:+37390248 | MS.gene50054:CDS |
| TGGTCTGATATAGAAGAAAC+CGG | 0.496586 | 4.2:-37390280 | None:intergenic |
| TACAAAAGAGACCCAGATGA+TGG | 0.498054 | 4.2:+37389976 | MS.gene50054:CDS |
| TTGAGAAACGAAGAAGCCAT+TGG | 0.498194 | 4.2:-37388206 | None:intergenic |
| TGAGAAACGAAGAAGCCATT+GGG | 0.499912 | 4.2:-37388205 | None:intergenic |
| ACTTGCAAATTCCAATGTAA+AGG | 0.500585 | 4.2:+37389840 | MS.gene50054:CDS |
| ATCGGGAACAACAGTAGGAT+TGG | 0.505029 | 4.2:-37389749 | None:intergenic |
| TCACGGTATAGATGATCAAA+AGG | 0.505121 | 4.2:-37390129 | None:intergenic |
| CAAAAGCTCAATTGAAGGAA+TGG | 0.508580 | 4.2:-37390304 | None:intergenic |
| TGGTGGTAGCTACAATGATT+GGG | 0.510224 | 4.2:+37388065 | None:intergenic |
| TCTTGGGTTCACAGATTCAT+CGG | 0.511020 | 4.2:-37389767 | None:intergenic |
| AGGCTTCGGCTTGCAGAGCA+AGG | 0.512498 | 4.2:+37389643 | MS.gene50054:CDS |
| GGCTTTCCAAGGAGGTCGCA+TGG | 0.512608 | 4.2:+37390343 | MS.gene50054:CDS |
| CTTGGGTTCACAGATTCATC+GGG | 0.514137 | 4.2:-37389766 | None:intergenic |
| GAGGGAACCATGCTGTCTCC+GGG | 0.515651 | 4.2:+37390022 | MS.gene50054:CDS |
| CTCGAGCATCTCCTTTACAT+TGG | 0.523884 | 4.2:-37389851 | None:intergenic |
| GCATGAAGCCCTTCATAACC+AGG | 0.525971 | 4.2:-37390408 | None:intergenic |
| GTGGTGGTAGCTACAATGAT+TGG | 0.527281 | 4.2:+37388064 | None:intergenic |
| CTTGACAGTACCAAAAGGTC+CGG | 0.528458 | 4.2:-37389716 | None:intergenic |
| CGGTCCAAAAGCTCAATTGA+AGG | 0.538339 | 4.2:-37390309 | None:intergenic |
| CAATCTGAGCCATCAGGGAA+AGG | 0.542774 | 4.2:-37390618 | None:intergenic |
| TGTCTTCGACGAACCTGCGA+TGG | 0.554872 | 4.2:+37390212 | MS.gene50054:CDS |
| TGAATCTGTGAACCCAAGAC+TGG | 0.555469 | 4.2:+37389771 | MS.gene50054:CDS |
| TGTCGCAACACGGCTTTCCA+AGG | 0.563994 | 4.2:+37390332 | MS.gene50054:CDS |
| GTCTTCGACGAACCTGCGAT+GGG | 0.565135 | 4.2:+37390213 | MS.gene50054:CDS |
| TATCGAGCCCAACCCATCGC+AGG | 0.565521 | 4.2:-37390225 | None:intergenic |
| GCTTTCCAAGGAGGTCGCAT+GGG | 0.571535 | 4.2:+37390344 | MS.gene50054:CDS |
| TAGAATACGAAATTTAAGCC+CGG | 0.575223 | 4.2:-37390040 | None:intergenic |
| AATCCCTTGACAGTACCAAA+AGG | 0.575926 | 4.2:-37389721 | None:intergenic |
| GTTCCTCGTTGAAAACGGCT+TGG | 0.577634 | 4.2:-37390368 | None:intergenic |
| TAACATGTTGACTCTATCTG+AGG | 0.578577 | 4.2:-37389551 | None:intergenic |
| GATTCATCGGGAACAACAGT+AGG | 0.588765 | 4.2:-37389754 | None:intergenic |
| GCTCTCAAACCTTTCCCTGA+TGG | 0.593787 | 4.2:+37390609 | MS.gene50054:CDS |
| TGGAAAGCCGTGTTGCGACA+CGG | 0.596370 | 4.2:-37390329 | None:intergenic |
| TTCACCAATATCAAGAGAGT+TGG | 0.596908 | 4.2:+37389880 | MS.gene50054:CDS |
| TCATTCGCGGAAGCTTATCA+GGG | 0.598350 | 4.2:-37390548 | None:intergenic |
| CCTTCATAACCAGGGTGTGA+CGG | 0.602424 | 4.2:-37390399 | None:intergenic |
| TAGTGTCAATACCATCATCT+GGG | 0.602710 | 4.2:-37389987 | None:intergenic |
| ATTGTAAACCCATATCCTCA+TGG | 0.612377 | 4.2:-37390256 | None:intergenic |
| CGTCACACCCTGGTTATGAA+GGG | 0.614212 | 4.2:+37390400 | MS.gene50054:CDS |
| GTTACCAATCTGAGCCATCA+GGG | 0.614642 | 4.2:-37390623 | None:intergenic |
| ATTTAAGCCCGGAGACAGCA+TGG | 0.617136 | 4.2:-37390029 | None:intergenic |
| TGTTGTTGGATCCAAAACCC+AGG | 0.631167 | 4.2:+37388255 | MS.gene50054:CDS |
| GACACTATTGGAAAACAAGG+AGG | 0.637402 | 4.2:+37390003 | MS.gene50054:CDS |
| GGCTTCGGCTTGCAGAGCAA+GGG | 0.638726 | 4.2:+37389644 | MS.gene50054:CDS |
| ATTGGGCGCAGAGAAAGAGA+AGG | 0.643934 | 4.2:+37388082 | MS.gene50054:CDS |
| ATTGACACTATTGGAAAACA+AGG | 0.644166 | 4.2:+37390000 | MS.gene50054:CDS |
| ACACTATTGGAAAACAAGGA+GGG | 0.646374 | 4.2:+37390004 | MS.gene50054:CDS |
| TGCAGAGCAAGGGAAAGACC+AGG | 0.647246 | 4.2:+37389654 | MS.gene50054:CDS |
| AGGTGAGGGAGTTGACCGAA+AGG | 0.647633 | 4.2:+37389623 | MS.gene50054:CDS |
| TGGACTCGACATCTGAATCA+CGG | 0.654697 | 4.2:-37390146 | None:intergenic |
| GATGTCGAGTCCATGAGCGA+TGG | 0.659572 | 4.2:+37390156 | MS.gene50054:CDS |
| CGCAACACGGCTTTCCAAGG+AGG | 0.663318 | 4.2:+37390335 | MS.gene50054:CDS |
| AAGAACTCCAATTACTACAG+CGG | 0.676513 | 4.2:-37388155 | None:intergenic |
| CTCGATACGCTCATACCATG+AGG | 0.687908 | 4.2:+37390241 | MS.gene50054:CDS |
| CATGAAGCCCTTCATAACCA+GGG | 0.689336 | 4.2:-37390407 | None:intergenic |
| TTCGCGGAAGCTTATCAGGG+TGG | 0.692799 | 4.2:-37390545 | None:intergenic |
| CAATGTAAAGGAGATGCTCG+AGG | 0.695514 | 4.2:+37389852 | MS.gene50054:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATGAAAACAAATAAC+AGG | - | chr4.2:37389130-37389149 | None:intergenic | 15.0% |
| !!! | CTATTTTCTCAAATTATTAT+TGG | + | chr4.2:37389281-37389300 | MS.gene50054:intron | 15.0% |
| !! | AATATCATTTCTCAAAAGTT+TGG | + | chr4.2:37388866-37388885 | MS.gene50054:intron | 20.0% |
| !! | ATATCATTTCTCAAAAGTTT+GGG | + | chr4.2:37388867-37388886 | MS.gene50054:intron | 20.0% |
| !! | ATTTGTTTATATTGGAGATT+TGG | + | chr4.2:37388569-37388588 | MS.gene50054:intron | 20.0% |
| !! | TTCATAGTTTATTGATAAGT+GGG | + | chr4.2:37388948-37388967 | MS.gene50054:intron | 20.0% |
| !! | TTGTTGAATATTATGTCAAT+GGG | + | chr4.2:37390577-37390596 | MS.gene50054:CDS | 20.0% |
| !! | TTTGTTTATATTGGAGATTT+GGG | + | chr4.2:37388570-37388589 | MS.gene50054:intron | 20.0% |
| !!! | TTGATGCTTTTAATAATTGT+GGG | + | chr4.2:37388397-37388416 | MS.gene50054:intron | 20.0% |
| !!! | TTTCAGAATTTTAGAATTGT+GGG | + | chr4.2:37388493-37388512 | MS.gene50054:intron | 20.0% |
| !!! | TTTTCTCAAATTATTATTGG+TGG | + | chr4.2:37389284-37389303 | MS.gene50054:intron | 20.0% |
| ! | CATAAAAAGAGAGAACAATA+AGG | - | chr4.2:37388737-37388756 | None:intergenic | 25.0% |
| ! | CTTTAGTGAAAATAAAACCT+GGG | - | chr4.2:37388275-37388294 | None:intergenic | 25.0% |
| ! | GTTCATAGTTTATTGATAAG+TGG | + | chr4.2:37388947-37388966 | MS.gene50054:intron | 25.0% |
| ! | GTTGTTGAATATTATGTCAA+TGG | + | chr4.2:37390576-37390595 | MS.gene50054:CDS | 25.0% |
| ! | TAATCTCAGTAAATTGAAAC+CGG | + | chr4.2:37390503-37390522 | MS.gene50054:CDS | 25.0% |
| ! | TCTCCAATATAAACAAATGT+AGG | - | chr4.2:37388567-37388586 | None:intergenic | 25.0% |
| ! | TCTTTAGTGAAAATAAAACC+TGG | - | chr4.2:37388276-37388295 | None:intergenic | 25.0% |
| ! | TTGCCTACATTTGTTTATAT+TGG | + | chr4.2:37388561-37388580 | MS.gene50054:intron | 25.0% |
| ! | TTTGAATCTATAGTTCAATG+TGG | + | chr4.2:37388533-37388552 | MS.gene50054:intron | 25.0% |
| !! | CTTATTGTTCTCTCTTTTTA+TGG | + | chr4.2:37388735-37388754 | MS.gene50054:intron | 25.0% |
| !! | CTTGATGCTTTTAATAATTG+TGG | + | chr4.2:37388396-37388415 | MS.gene50054:intron | 25.0% |
| !!! | AACATTTGTTTTTGTTTCAC+TGG | + | chr4.2:37389425-37389444 | MS.gene50054:intron | 25.0% |
| !!! | ATACCTGTTTTCTTTTGAAA+TGG | + | chr4.2:37389225-37389244 | MS.gene50054:intron | 25.0% |
| !!! | ATCATGATTTTTTTTTTGCC+AGG | + | chr4.2:37389507-37389526 | MS.gene50054:intron | 25.0% |
| !!! | CACAATTATTAAAAGCATCA+AGG | - | chr4.2:37388398-37388417 | None:intergenic | 25.0% |
| !!! | GTTTCAGAATTTTAGAATTG+TGG | + | chr4.2:37388492-37388511 | MS.gene50054:intron | 25.0% |
| !!! | TACCTGTTTTCTTTTGAAAT+GGG | + | chr4.2:37389226-37389245 | MS.gene50054:intron | 25.0% |
| ACTTGCAAATTCCAATGTAA+AGG | + | chr4.2:37389840-37389859 | MS.gene50054:CDS | 30.0% | |
| ACTTGTGGTTACATATTGTT+GGG | + | chr4.2:37388920-37388939 | MS.gene50054:intron | 30.0% | |
| AGCTTAGGGTTTAAATACTA+AGG | - | chr4.2:37389025-37389044 | None:intergenic | 30.0% | |
| ATACAATGTCAACATCTGAT+AGG | - | chr4.2:37390098-37390117 | None:intergenic | 30.0% | |
| ATTGACACTATTGGAAAACA+AGG | + | chr4.2:37390000-37390019 | MS.gene50054:CDS | 30.0% | |
| CAAAAACAGTTTCTTGCATT+AGG | + | chr4.2:37389679-37389698 | MS.gene50054:CDS | 30.0% | |
| CATAATAACATGACAGCTTA+CGG | + | chr4.2:37390180-37390199 | MS.gene50054:CDS | 30.0% | |
| CATGTTAAAATCAGAGTTTG+TGG | + | chr4.2:37389567-37389586 | MS.gene50054:CDS | 30.0% | |
| CTTTCTATCATTCAAGCTTA+GGG | - | chr4.2:37389039-37389058 | None:intergenic | 30.0% | |
| GATATTTGTACAACCATTCT+GGG | - | chr4.2:37388852-37388871 | None:intergenic | 30.0% | |
| GCTTAAGTTAAGAGGTTTAT+AGG | + | chr4.2:37388631-37388650 | MS.gene50054:intron | 30.0% | |
| GTAGTAATTGGAGTTCTTAT+TGG | + | chr4.2:37388160-37388179 | MS.gene50054:CDS | 30.0% | |
| TAATTCACGTGAACAATTAC+CGG | - | chr4.2:37390525-37390544 | None:intergenic | 30.0% | |
| TAGAATACGAAATTTAAGCC+CGG | - | chr4.2:37390043-37390062 | None:intergenic | 30.0% | |
| TAGTTTATTGATAAGTGGGT+AGG | + | chr4.2:37388952-37388971 | MS.gene50054:intron | 30.0% | |
| TATACCAACTCTCTTGATAT+TGG | - | chr4.2:37389887-37389906 | None:intergenic | 30.0% | |
| TCACAAATGCTTAAGTTAAG+AGG | + | chr4.2:37388623-37388642 | MS.gene50054:intron | 30.0% | |
| TGATATTTGTACAACCATTC+TGG | - | chr4.2:37388853-37388872 | None:intergenic | 30.0% | |
| TTAATAATTGTGGGTCATTG+TGG | + | chr4.2:37388406-37388425 | MS.gene50054:intron | 30.0% | |
| TTAGGTAAACAAGAAAAAGC+CGG | + | chr4.2:37389697-37389716 | MS.gene50054:CDS | 30.0% | |
| ! | AACCATTTTACGACAACTTT+TGG | + | chr4.2:37388706-37388725 | MS.gene50054:intron | 30.0% |
| ! | ACCATTTTACGACAACTTTT+GGG | + | chr4.2:37388707-37388726 | MS.gene50054:intron | 30.0% |
| ! | CTAAGAGAATTTTTGCAGTT+GGG | + | chr4.2:37390060-37390079 | MS.gene50054:CDS | 30.0% |
| ! | TCTAAGAGAATTTTTGCAGT+TGG | + | chr4.2:37390059-37390078 | MS.gene50054:CDS | 30.0% |
| ! | TGAAAATAAAACCTGGGTTT+TGG | - | chr4.2:37388269-37388288 | None:intergenic | 30.0% |
| ! | TGTCTGTTATTCATCTTTTC+TGG | - | chr4.2:37389479-37389498 | None:intergenic | 30.0% |
| !!! | ACCTGTTTTCTTTTGAAATG+GGG | + | chr4.2:37389227-37389246 | MS.gene50054:intron | 30.0% |
| !!! | GTTTTTGTTTCACTGGTTTT+TGG | + | chr4.2:37389432-37389451 | MS.gene50054:intron | 30.0% |
| !!! | TTAGCTTTCTTTTTTCCCAA+TGG | + | chr4.2:37388190-37388209 | MS.gene50054:CDS | 30.0% |
| AAAGAGTTCCTCGTTGAAAA+CGG | - | chr4.2:37390376-37390395 | None:intergenic | 35.0% | |
| AAATGCTGAGCTGAAAAAAC+AGG | + | chr4.2:37389603-37389622 | MS.gene50054:CDS | 35.0% | |
| AACAGGAGAGATTTGATCAT+CGG | - | chr4.2:37389113-37389132 | None:intergenic | 35.0% | |
| AAGAACTCCAATTACTACAG+CGG | - | chr4.2:37388158-37388177 | None:intergenic | 35.0% | |
| ACACTATTGGAAAACAAGGA+GGG | + | chr4.2:37390004-37390023 | MS.gene50054:CDS | 35.0% | |
| ACCCAAAAGTTGTCGTAAAA+TGG | - | chr4.2:37388711-37388730 | None:intergenic | 35.0% | |
| ACCCCATTTCAAAAGAAAAC+AGG | - | chr4.2:37389231-37389250 | None:intergenic | 35.0% | |
| AGAGATTTGATCATCGGATT+TGG | - | chr4.2:37389107-37389126 | None:intergenic | 35.0% | |
| AGGATATGGGTTTACAATTC+CGG | + | chr4.2:37390261-37390280 | MS.gene50054:CDS | 35.0% | |
| ATAGTGTCAATACCATCATC+TGG | - | chr4.2:37389991-37390010 | None:intergenic | 35.0% | |
| ATGAGGATTGTTTCGCATTA+AGG | - | chr4.2:37388110-37388129 | None:intergenic | 35.0% | |
| ATGTTTGCCTATACAAGTCA+AGG | - | chr4.2:37389410-37389429 | None:intergenic | 35.0% | |
| ATTGTAAACCCATATCCTCA+TGG | - | chr4.2:37390259-37390278 | None:intergenic | 35.0% | |
| ATTGTTACCGCTGTAGTAAT+TGG | + | chr4.2:37388148-37388167 | MS.gene50054:CDS | 35.0% | |
| CAAAAGCTCAATTGAAGGAA+TGG | - | chr4.2:37390307-37390326 | None:intergenic | 35.0% | |
| CCTAAGCTTGAATGATAGAA+AGG | + | chr4.2:37389037-37389056 | MS.gene50054:intron | 35.0% | |
| CCTTTCTATCATTCAAGCTT+AGG | - | chr4.2:37389040-37389059 | None:intergenic | 35.0% | |
| CGTAAGCTGTCATGTTATTA+TGG | - | chr4.2:37390182-37390201 | None:intergenic | 35.0% | |
| GACTTGTGGTTACATATTGT+TGG | + | chr4.2:37388919-37388938 | MS.gene50054:intron | 35.0% | |
| TAGTGTCAATACCATCATCT+GGG | - | chr4.2:37389990-37390009 | None:intergenic | 35.0% | |
| TATGCAATCAAGAGACATAG+TGG | + | chr4.2:37389072-37389091 | MS.gene50054:intron | 35.0% | |
| TCACGGTATAGATGATCAAA+AGG | - | chr4.2:37390132-37390151 | None:intergenic | 35.0% | |
| TGAGGATTGTTTCGCATTAA+GGG | - | chr4.2:37388109-37388128 | None:intergenic | 35.0% | |
| TGGTCTGATATAGAAGAAAC+CGG | - | chr4.2:37390283-37390302 | None:intergenic | 35.0% | |
| TGGTTACATATTGTTGGGTA+TGG | + | chr4.2:37388925-37388944 | MS.gene50054:intron | 35.0% | |
| TGTTAGTGCTCAATTATGAG+CGG | + | chr4.2:37389350-37389369 | MS.gene50054:intron | 35.0% | |
| TTCACCAATATCAAGAGAGT+TGG | + | chr4.2:37389880-37389899 | MS.gene50054:CDS | 35.0% | |
| TTGAGCACTAACACAAACAT+TGG | - | chr4.2:37389343-37389362 | None:intergenic | 35.0% | |
| ! | CATTCCTTCAATTGAGCTTT+TGG | + | chr4.2:37390305-37390324 | MS.gene50054:CDS | 35.0% |
| ! | CTGGGTCTCTTTTGTAAAAT+GGG | - | chr4.2:37389972-37389991 | None:intergenic | 35.0% |
| ! | TCTGGGTCTCTTTTGTAAAA+TGG | - | chr4.2:37389973-37389992 | None:intergenic | 35.0% |
| !! | AAGTTCTTTTCAAGACAGTG+AGG | + | chr4.2:37390472-37390491 | MS.gene50054:CDS | 35.0% |
| !! | CAAATTATTATTGGTGGCGT+TGG | + | chr4.2:37389290-37389309 | MS.gene50054:intron | 35.0% |
| !! | GATGATGGTATTGACACTAT+TGG | + | chr4.2:37389991-37390010 | MS.gene50054:CDS | 35.0% |
| !! | TAACATGTTGACTCTATCTG+AGG | - | chr4.2:37389554-37389573 | None:intergenic | 35.0% |
| !!! | GGTTTTTGGTTTACAAGATG+AGG | + | chr4.2:37389446-37389465 | MS.gene50054:intron | 35.0% |
| AATCCCTTGACAGTACCAAA+AGG | - | chr4.2:37389724-37389743 | None:intergenic | 40.0% | |
| AGCTCAATTGAAGGAATGGT+TGG | - | chr4.2:37390303-37390322 | None:intergenic | 40.0% | |
| CCAATATCTTTGCCAGTCTT+GGG | - | chr4.2:37389786-37389805 | None:intergenic | 40.0% | |
| CTCATTCTCTACGCAAATCA+AGG | + | chr4.2:37388125-37388144 | MS.gene50054:CDS | 40.0% | |
| GACACTATTGGAAAACAAGG+AGG | + | chr4.2:37390003-37390022 | MS.gene50054:CDS | 40.0% | |
| TACAAAAGAGACCCAGATGA+TGG | + | chr4.2:37389976-37389995 | MS.gene50054:CDS | 40.0% | |
| TCAACAACTGCTTTCATTCG+CGG | - | chr4.2:37390564-37390583 | None:intergenic | 40.0% | |
| TCATGCTGCTAGAAGAACTA+TGG | + | chr4.2:37390425-37390444 | MS.gene50054:CDS | 40.0% | |
| TCCAATATCTTTGCCAGTCT+TGG | - | chr4.2:37389787-37389806 | None:intergenic | 40.0% | |
| TCTTGGGTTCACAGATTCAT+CGG | - | chr4.2:37389770-37389789 | None:intergenic | 40.0% | |
| TGAGAAACGAAGAAGCCATT+GGG | - | chr4.2:37388208-37388227 | None:intergenic | 40.0% | |
| TGAGCTGAAAAAACAGGTGA+GGG | + | chr4.2:37389609-37389628 | MS.gene50054:CDS | 40.0% | |
| TTGAGAAACGAAGAAGCCAT+TGG | - | chr4.2:37388209-37388228 | None:intergenic | 40.0% | |
| ! | TCTCAAAAGTTTGGGAGTGT+CGG | + | chr4.2:37388875-37388894 | MS.gene50054:intron | 40.0% |
| ! | TCTTTTGACACTGAGACTTG+TGG | + | chr4.2:37388905-37388924 | MS.gene50054:intron | 40.0% |
| !! | CTTGATTTGCGTAGAGAATG+AGG | - | chr4.2:37388127-37388146 | None:intergenic | 40.0% |
| !! | GAGATTTGGGTTGTTAGATG+TGG | + | chr4.2:37388583-37388602 | MS.gene50054:intron | 40.0% |
| !!! | AACCATTCTGGGACAACTTT+TGG | - | chr4.2:37388841-37388860 | None:intergenic | 40.0% |
| !!! | CAAGAAACTGTTTTTGAGCC+TGG | - | chr4.2:37389675-37389694 | None:intergenic | 40.0% |
| !!! | GCTTTTGCCTTGACTTGTAT+AGG | + | chr4.2:37389400-37389419 | MS.gene50054:intron | 40.0% |
| AAGAGACATAGTGGCGCAAT+TGG | + | chr4.2:37389081-37389100 | MS.gene50054:intron | 45.0% | |
| AATCGTCGCATCCATGTTGT+TGG | + | chr4.2:37388241-37388260 | MS.gene50054:CDS | 45.0% | |
| ACGCTCATACCATGAGGATA+TGG | + | chr4.2:37390247-37390266 | MS.gene50054:CDS | 45.0% | |
| ATCGGGAACAACAGTAGGAT+TGG | - | chr4.2:37389752-37389771 | None:intergenic | 45.0% | |
| CAATGTAAAGGAGATGCTCG+AGG | + | chr4.2:37389852-37389871 | MS.gene50054:CDS | 45.0% | |
| CATGAAGCCCTTCATAACCA+GGG | - | chr4.2:37390410-37390429 | None:intergenic | 45.0% | |
| CCCAAGACTGGCAAAGATAT+TGG | + | chr4.2:37389783-37389802 | MS.gene50054:CDS | 45.0% | |
| CGCTCATACCATGAGGATAT+GGG | + | chr4.2:37390248-37390267 | MS.gene50054:CDS | 45.0% | |
| CGGTCCAAAAGCTCAATTGA+AGG | - | chr4.2:37390312-37390331 | None:intergenic | 45.0% | |
| CTCGAGCATCTCCTTTACAT+TGG | - | chr4.2:37389854-37389873 | None:intergenic | 45.0% | |
| CTGAGCTGAAAAAACAGGTG+AGG | + | chr4.2:37389608-37389627 | MS.gene50054:CDS | 45.0% | |
| CTTGACAGTACCAAAAGGTC+CGG | - | chr4.2:37389719-37389738 | None:intergenic | 45.0% | |
| CTTGGGTTCACAGATTCATC+GGG | - | chr4.2:37389769-37389788 | None:intergenic | 45.0% | |
| GATTCATCGGGAACAACAGT+AGG | - | chr4.2:37389757-37389776 | None:intergenic | 45.0% | |
| GTCCAAAAGTTGTCCCAGAA+TGG | + | chr4.2:37388836-37388855 | MS.gene50054:intron | 45.0% | |
| GTTATTATGGCCATCGCTCA+TGG | - | chr4.2:37390169-37390188 | None:intergenic | 45.0% | |
| TCATTCGCGGAAGCTTATCA+GGG | - | chr4.2:37390551-37390570 | None:intergenic | 45.0% | |
| TGAATCTGTGAACCCAAGAC+TGG | + | chr4.2:37389771-37389790 | MS.gene50054:CDS | 45.0% | |
| TGGACTCGACATCTGAATCA+CGG | - | chr4.2:37390149-37390168 | None:intergenic | 45.0% | |
| TGTTGTTGGATCCAAAACCC+AGG | + | chr4.2:37388255-37388274 | MS.gene50054:CDS | 45.0% | |
| TTCATTCGCGGAAGCTTATC+AGG | - | chr4.2:37390552-37390571 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr4.2:37389177-37389196 | None:intergenic | 45.0% |
| ! | CAAGAAAAAGCCGGACCTTT+TGG | + | chr4.2:37389706-37389725 | MS.gene50054:CDS | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr4.2:37389178-37389197 | None:intergenic | 45.0% |
| ! | GGACCTTTTGGTACTGTCAA+GGG | + | chr4.2:37389718-37389737 | MS.gene50054:CDS | 45.0% |
| !! | TTGGTGCTACCTGTGAAAGT+CGG | + | chr4.2:37389309-37389328 | MS.gene50054:intron | 45.0% |
| !!! | GGGTTTTGGATCCAACAACA+TGG | - | chr4.2:37388255-37388274 | None:intergenic | 45.0% |
| ATTGGGCGCAGAGAAAGAGA+AGG | + | chr4.2:37388082-37388101 | MS.gene50054:CDS | 50.0% | |
| ATTTAAGCCCGGAGACAGCA+TGG | - | chr4.2:37390032-37390051 | None:intergenic | 50.0% | |
| CAATCTGAGCCATCAGGGAA+AGG | - | chr4.2:37390621-37390640 | None:intergenic | 50.0% | |
| CACATTCAGCTGAGTTTGCC+TGG | - | chr4.2:37389528-37389547 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr4.2:37389176-37389195 | MS.gene50054:intron | 50.0% | |
| CCTTCATAACCAGGGTGTGA+CGG | - | chr4.2:37390402-37390421 | None:intergenic | 50.0% | |
| CGTCACACCCTGGTTATGAA+GGG | + | chr4.2:37390400-37390419 | MS.gene50054:CDS | 50.0% | |
| CTCGATACGCTCATACCATG+AGG | + | chr4.2:37390241-37390260 | MS.gene50054:CDS | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr4.2:37389173-37389192 | None:intergenic | 50.0% | |
| CTTTCCCTGATGGCTCAGAT+TGG | + | chr4.2:37390619-37390638 | MS.gene50054:CDS | 50.0% | |
| GCATGAAGCCCTTCATAACC+AGG | - | chr4.2:37390411-37390430 | None:intergenic | 50.0% | |
| GCTCTCAAACCTTTCCCTGA+TGG | + | chr4.2:37390609-37390628 | MS.gene50054:CDS | 50.0% | |
| GTTCCTCGTTGAAAACGGCT+TGG | - | chr4.2:37390371-37390390 | None:intergenic | 50.0% | |
| TAAAGGAGATGCTCGAGGTC+TGG | + | chr4.2:37389857-37389876 | MS.gene50054:CDS | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr4.2:37389179-37389198 | None:intergenic | 50.0% |
| ! | CGGACCTTTTGGTACTGTCA+AGG | + | chr4.2:37389717-37389736 | MS.gene50054:CDS | 50.0% |
| ! | CTCTTTTATCCGTCACACCC+TGG | + | chr4.2:37390390-37390409 | MS.gene50054:CDS | 50.0% |
| ! | TTTTGGACCGTGTCGCAACA+CGG | + | chr4.2:37390322-37390341 | MS.gene50054:CDS | 50.0% |
| !! | GACACAGTACCGACTTTCAC+AGG | - | chr4.2:37389321-37389340 | None:intergenic | 50.0% |
| AAGTGGGTAGGTCACTCGAG+CGG | + | chr4.2:37388964-37388983 | MS.gene50054:intron | 55.0% | |
| AGCGGGTGGGTATGGTTCAT+AGG | + | chr4.2:37388982-37389001 | MS.gene50054:intron | 55.0% | |
| AGGTGAGGGAGTTGACCGAA+AGG | + | chr4.2:37389623-37389642 | MS.gene50054:CDS | 55.0% | |
| CCGTCACACCCTGGTTATGA+AGG | + | chr4.2:37390399-37390418 | MS.gene50054:CDS | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr4.2:37389171-37389190 | MS.gene50054:intron | 55.0% | |
| CTCTGCAAGCCGAAGCCTTT+CGG | - | chr4.2:37389641-37389660 | None:intergenic | 55.0% | |
| GATGTCGAGTCCATGAGCGA+TGG | + | chr4.2:37390156-37390175 | MS.gene50054:CDS | 55.0% | |
| GCTTTCCAAGGAGGTCGCAT+GGG | + | chr4.2:37390344-37390363 | MS.gene50054:CDS | 55.0% | |
| GGGAGTTGACCGAAAGGCTT+CGG | + | chr4.2:37389629-37389648 | MS.gene50054:CDS | 55.0% | |
| GTCTTCGACGAACCTGCGAT+GGG | + | chr4.2:37390213-37390232 | MS.gene50054:CDS | 55.0% | |
| TGCAGAGCAAGGGAAAGACC+AGG | + | chr4.2:37389654-37389673 | MS.gene50054:CDS | 55.0% | |
| TGGAAAGCCGTGTTGCGACA+CGG | - | chr4.2:37390332-37390351 | None:intergenic | 55.0% | |
| TGTCGCAACACGGCTTTCCA+AGG | + | chr4.2:37390332-37390351 | MS.gene50054:CDS | 55.0% | |
| TGTCTTCGACGAACCTGCGA+TGG | + | chr4.2:37390212-37390231 | MS.gene50054:CDS | 55.0% | |
| TTCGCGGAAGCTTATCAGGG+TGG | - | chr4.2:37390548-37390567 | None:intergenic | 55.0% | |
| TTGAGCCGACCCCACTTAGT+GGG | + | chr4.2:37389165-37389184 | MS.gene50054:intron | 55.0% | |
| TTTGAGCCGACCCCACTTAG+TGG | + | chr4.2:37389164-37389183 | MS.gene50054:intron | 55.0% | |
| !! | GGACCAAGCCGTTTTCAACG+AGG | + | chr4.2:37390365-37390384 | MS.gene50054:CDS | 55.0% |
| AGTGGGTAGGTCACTCGAGC+GGG | + | chr4.2:37388965-37388984 | MS.gene50054:intron | 60.0% | |
| CGCAACACGGCTTTCCAAGG+AGG | + | chr4.2:37390335-37390354 | MS.gene50054:CDS | 60.0% | |
| GAGGGAACCATGCTGTCTCC+GGG | + | chr4.2:37390022-37390041 | MS.gene50054:CDS | 60.0% | |
| GGAGGGAACCATGCTGTCTC+CGG | + | chr4.2:37390021-37390040 | MS.gene50054:CDS | 60.0% | |
| GGCTTTCCAAGGAGGTCGCA+TGG | + | chr4.2:37390343-37390362 | MS.gene50054:CDS | 60.0% | |
| TATCGAGCCCAACCCATCGC+AGG | - | chr4.2:37390228-37390247 | None:intergenic | 60.0% | |
| TCGACGAACCTGCGATGGGT+TGG | + | chr4.2:37390217-37390236 | MS.gene50054:CDS | 60.0% | |
| TTGGTCCCATGCGACCTCCT+TGG | - | chr4.2:37390352-37390371 | None:intergenic | 60.0% | |
| ! | AGGCTTCGGCTTGCAGAGCA+AGG | + | chr4.2:37389643-37389662 | MS.gene50054:CDS | 60.0% |
| ! | CGACGAACCTGCGATGGGTT+GGG | + | chr4.2:37390218-37390237 | MS.gene50054:CDS | 60.0% |
| ! | GGCTTCGGCTTGCAGAGCAA+GGG | + | chr4.2:37389644-37389663 | MS.gene50054:CDS | 60.0% |
| GGTAGGTCACTCGAGCGGGT+GGG | + | chr4.2:37388969-37388988 | MS.gene50054:intron | 65.0% | |
| GTCACTCGAGCGGGTGGGTA+TGG | + | chr4.2:37388974-37388993 | MS.gene50054:intron | 65.0% | |
| GGGTAGGTCACTCGAGCGGG+TGG | + | chr4.2:37388968-37388987 | MS.gene50054:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 37388079 | 37390644 | 37388079 | ID=MS.gene50054 |
| chr4.2 | mRNA | 37388079 | 37390644 | 37388079 | ID=MS.gene50054.t1;Parent=MS.gene50054 |
| chr4.2 | exon | 37388079 | 37388276 | 37388079 | ID=MS.gene50054.t1.exon1;Parent=MS.gene50054.t1 |
| chr4.2 | CDS | 37388079 | 37388276 | 37388079 | ID=cds.MS.gene50054.t1;Parent=MS.gene50054.t1 |
| chr4.2 | exon | 37389529 | 37390644 | 37389529 | ID=MS.gene50054.t1.exon2;Parent=MS.gene50054.t1 |
| chr4.2 | CDS | 37389529 | 37390644 | 37389529 | ID=cds.MS.gene50054.t1;Parent=MS.gene50054.t1 |
| Gene Sequence |
| Protein sequence |
