AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50092

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50092.t1 MTR_4g005090 92.200 500 7 2 1 470 2 499 0.0 910
MS.gene50092.t1 MTR_2g081930 27.615 478 290 18 2 465 88 523 3.11e-31 126
MS.gene50092.t1 MTR_4g081490 27.083 432 256 16 50 470 63 446 8.59e-28 115
MS.gene50092.t1 MTR_2g081950 27.187 423 254 18 52 460 18 400 4.87e-25 107
MS.gene50092.t1 MTR_3g098360 70.370 54 16 0 396 449 72 125 8.68e-19 82.8
MS.gene50092.t1 MTR_8g447340 26.190 462 270 18 27 470 112 520 9.17e-19 89.4
MS.gene50092.t1 MTR_5g075300 22.318 466 293 15 28 459 47 477 4.00e-17 84.3
MS.gene50092.t1 MTR_7g446340 24.138 464 271 18 28 459 83 497 1.89e-16 82.0
MS.gene50092.t1 MTR_6g007340 24.138 464 271 18 28 459 83 497 1.89e-16 82.0
MS.gene50092.t1 MTR_4g072030 23.557 433 277 14 52 459 79 482 2.05e-15 79.0
MS.gene50092.t1 MTR_8g077890 22.926 458 300 15 28 459 47 477 4.47e-15 77.8
MS.gene50092.t1 MTR_2g049020 28.934 197 131 6 38 230 68 259 3.51e-14 75.1
MS.gene50092.t1 MTR_8g103500 25.128 390 219 13 51 409 69 416 7.18e-14 73.9
MS.gene50092.t1 MTR_3g084110 29.384 211 144 4 17 224 49 257 1.90e-13 72.8
MS.gene50092.t1 MTR_3g116240 22.294 462 298 12 28 459 56 486 3.80e-13 72.0
MS.gene50092.t1 MTR_4g013205 29.146 199 117 5 39 228 77 260 5.21e-13 71.2
MS.gene50092.t1 MTR_1g074940 24.516 465 266 22 42 457 72 500 7.12e-13 70.9
MS.gene50092.t1 MTR_6g087910 24.678 466 273 15 17 459 71 481 8.90e-13 70.5
MS.gene50092.t1 MTR_7g082270 28.230 209 137 7 39 241 106 307 1.06e-12 70.5
MS.gene50092.t1 MTR_7g082270 26.374 182 115 4 39 211 106 277 1.44e-12 69.7
MS.gene50092.t1 MTR_6g088450 22.664 428 273 14 51 455 109 501 2.53e-12 69.3
MS.gene50092.t1 MTR_4g069500 22.936 436 287 14 51 463 31 440 3.11e-12 68.9
MS.gene50092.t1 MTR_1g116660 29.167 168 115 3 60 224 98 264 3.17e-12 68.9
MS.gene50092.t1 MTR_4g069500 22.936 436 287 14 51 463 81 490 4.47e-12 68.6
MS.gene50092.t1 MTR_7g005910 28.144 167 116 3 58 221 94 259 3.44e-11 65.5
MS.gene50092.t1 MTR_7g094450 26.368 201 143 3 27 226 67 263 6.68e-11 64.7
MS.gene50092.t1 MTR_2g013310 24.631 203 139 4 28 226 8 200 8.06e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50092.t1 AT3G13050 66.518 448 145 4 24 466 47 494 0.0 540
MS.gene50092.t1 AT3G13050 66.518 448 145 4 24 466 47 494 0.0 540
MS.gene50092.t1 AT3G13050 66.518 448 145 4 24 466 47 494 0.0 540
MS.gene50092.t1 AT3G13050 66.518 448 145 4 24 466 47 494 0.0 540
MS.gene50092.t1 AT3G20660 27.174 460 267 17 25 468 107 514 1.40e-31 127
MS.gene50092.t1 AT3G18830 22.951 427 291 10 51 459 87 493 1.78e-17 85.5
MS.gene50092.t1 AT1G67300 26.042 384 225 10 39 406 92 432 1.09e-16 82.8
MS.gene50092.t1 AT2G16130 25.056 443 269 15 51 462 77 487 2.02e-16 82.0
MS.gene50092.t1 AT1G67300 26.110 383 225 10 39 406 92 431 5.24e-16 80.5
MS.gene50092.t1 AT1G67300 26.110 383 225 10 39 406 92 431 5.24e-16 80.5
MS.gene50092.t1 AT1G67300 26.110 383 225 10 39 406 92 431 7.74e-16 80.1
MS.gene50092.t1 AT1G67300 26.110 383 225 10 39 406 92 431 7.74e-16 80.1
MS.gene50092.t1 AT1G67300 26.203 374 218 10 39 397 92 422 1.39e-15 79.0
MS.gene50092.t1 AT1G67300 26.203 374 218 10 39 397 92 422 1.39e-15 79.0
MS.gene50092.t1 AT1G79820 29.134 254 141 9 39 280 95 321 1.69e-15 79.0
MS.gene50092.t1 AT2G16120 25.000 440 267 15 51 459 77 484 2.38e-15 79.0
MS.gene50092.t1 AT1G73220 23.684 494 295 18 2 470 95 531 2.98e-15 78.6
MS.gene50092.t1 AT1G79820 29.268 205 120 6 39 233 95 284 7.33e-15 77.0
MS.gene50092.t1 AT1G79820 29.268 205 120 6 39 233 95 284 8.51e-15 77.0
MS.gene50092.t1 AT1G79820 29.268 205 120 6 39 233 95 284 8.51e-15 77.0
MS.gene50092.t1 AT2G20780 24.318 440 252 18 51 459 106 495 5.87e-14 74.3
MS.gene50092.t1 AT2G20780 24.318 440 252 18 51 459 48 437 1.11e-13 73.6
MS.gene50092.t1 AT1G79360 24.895 474 268 18 27 468 98 515 1.45e-13 73.2
MS.gene50092.t1 AT1G79410 23.919 347 212 11 127 469 209 507 6.11e-13 71.2
MS.gene50092.t1 AT1G16390 26.190 462 260 19 24 462 101 504 4.07e-12 68.6
MS.gene50092.t1 AT2G18480 22.727 440 275 14 51 459 73 478 3.79e-11 65.5
MS.gene50092.t1 AT5G16150 26.380 163 116 3 39 198 146 307 9.12e-11 64.3
MS.gene50092.t1 AT5G16150 26.380 163 116 3 39 198 146 307 9.12e-11 64.3
MS.gene50092.t1 AT5G16150 26.380 163 116 3 39 198 146 307 9.12e-11 64.3

Find 115 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGGTTGACCTTGATAATT+TGG 0.146854 4.3:+89808188 None:intergenic
CAAGGTCAACCCTTCTATTA+TGG 0.150801 4.3:-89808179 MS.gene50092:CDS
GTAATTGTAGCTCTTGTTTC+AGG 0.165395 4.3:-89806869 MS.gene50092:CDS
TTCTCTGTCTGCAATTTATC+TGG 0.184428 4.3:+89808075 None:intergenic
AAAGGAATGATTTCTAATTT+AGG 0.203260 4.3:-89808243 MS.gene50092:CDS
ACAAGCAAGGAGACATAATT+TGG 0.223234 4.3:+89810291 None:intergenic
ACACAGTATCTTGCAGTTCT+TGG 0.248615 4.3:+89806810 None:intergenic
GATGAAGCTCTTATAACATT+AGG 0.282008 4.3:-89810591 MS.gene50092:intron
TCCCTTGTTGGTCTTGGTTT+GGG 0.287217 4.3:-89810261 MS.gene50092:CDS
TTCCCTTGTTGGTCTTGGTT+TGG 0.301151 4.3:-89810262 MS.gene50092:CDS
CAATTTGATTGTCAGAAATA+AGG 0.308448 4.3:+89808340 None:intergenic
AACTGAAGCAACTAACGTTT+TGG 0.312177 4.3:-89808406 MS.gene50092:CDS
AGGCCCGTTGTTAGGTCTTC+AGG 0.323940 4.3:+89807808 None:intergenic
TTTCGTTCCCTTGTTGGTCT+TGG 0.331910 4.3:-89810267 MS.gene50092:CDS
GAGACAATAGCAAGACTAAA+TGG 0.335400 4.3:-89808384 MS.gene50092:CDS
AAATTAGAAATCATTCCTTT+AGG 0.339113 4.3:+89808246 None:intergenic
CAAATAAAAGGCCCGTTGTT+AGG 0.349459 4.3:+89807800 None:intergenic
CCTTTCAAGCATAGGTATCT+TGG 0.351124 4.3:+89808435 None:intergenic
TCAGGCAGATAGAATGTTAA+TGG 0.357682 4.3:+89807826 None:intergenic
ATATGCGAGCTCCAAATAAA+AGG 0.364937 4.3:+89807788 None:intergenic
AAAACACTGCCCATAATAGA+AGG 0.371337 4.3:+89808169 None:intergenic
ACCATCCAGGTACCTCTATT+AGG 0.375794 4.3:+89810192 None:intergenic
CACCTTTGTAACTTACATCC+TGG 0.379885 4.3:+89808049 None:intergenic
CAAGCAAGGAGACATAATTT+GGG 0.393596 4.3:+89810292 None:intergenic
AAGGTCAACCCTTCTATTAT+GGG 0.403508 4.3:-89808178 MS.gene50092:CDS
TTCTTTCCGTTTGAGACCAT+GGG 0.417476 4.3:-89806833 MS.gene50092:CDS
AGGGTTGACCTTGATAATTT+GGG 0.419441 4.3:+89808189 None:intergenic
GCAGATTGTGATGCCAAGAC+TGG 0.425745 4.3:-89808535 MS.gene50092:intron
GCAAGCTCAGTGGGTAGAAT+TGG 0.439186 4.3:-89806965 MS.gene50092:CDS
TGTTAATTGGTGCTTACTCA+TGG 0.439266 4.3:-89810404 MS.gene50092:CDS
GTTGGTCTTGGTTTGGGAGG+CGG 0.439641 4.3:-89810255 MS.gene50092:CDS
GTTCTTTCCGTTTGAGACCA+TGG 0.452361 4.3:-89806834 MS.gene50092:CDS
TTCCATGCAGATTGAACTGC+AGG 0.455398 4.3:+89810477 None:intergenic
CATAGGTATCTTGGTGACTC+TGG 0.463933 4.3:+89808444 None:intergenic
GATCAACATGGAAGGAGAAA+AGG 0.467204 4.3:-89810369 MS.gene50092:CDS
CAGGCAGATAGAATGTTAAT+GGG 0.472478 4.3:+89807827 None:intergenic
ACCTTTGTAACTTACATCCT+GGG 0.474759 4.3:+89808050 None:intergenic
ACCTTGATAATTTGGGTGAA+AGG 0.476208 4.3:+89808196 None:intergenic
AAGAAGGAAAGATGTGGGAA+GGG 0.478654 4.3:+89808485 None:intergenic
AGTACATTATTATAGATGAC+AGG 0.482861 4.3:-89810657 None:intergenic
ATCTTGCAGTTCTTGGCCCA+TGG 0.491779 4.3:+89806817 None:intergenic
GTTAATTGGTGCTTACTCAT+GGG 0.492775 4.3:-89810403 MS.gene50092:CDS
TTGTTCTACCTTTCAAGCAT+AGG 0.498229 4.3:+89808427 None:intergenic
TCCTTTCACCCAAATTATCA+AGG 0.499337 4.3:-89808197 MS.gene50092:CDS
TCTCTGTCTGCAATTTATCT+GGG 0.508969 4.3:+89808076 None:intergenic
CTGCCTGAAGACCTAACAAC+GGG 0.512273 4.3:-89807811 MS.gene50092:CDS
CCAAGATACCTATGCTTGAA+AGG 0.516263 4.3:-89808435 MS.gene50092:CDS
AGCTCAGTGGGTAGAATTGG+TGG 0.521900 4.3:-89806962 MS.gene50092:CDS
AGCCATCTCCAACCCAGTCT+TGG 0.527031 4.3:+89808522 None:intergenic
TTTGTTCCCGCTCCTAATAG+AGG 0.528407 4.3:-89810204 MS.gene50092:CDS
GCTACTGTTACTGCTACTGC+CGG 0.538066 4.3:-89810333 MS.gene50092:CDS
GAAGAAGGAAAGATGTGGGA+AGG 0.538946 4.3:+89808484 None:intergenic
TCTTGGCCCATGGTCTCAAA+CGG 0.539054 4.3:+89806827 None:intergenic
TATGAAACTTTCTTGATGAG+AGG 0.540801 4.3:+89810449 None:intergenic
CCGCTCCTAATAGAGGTACC+TGG 0.542053 4.3:-89810197 MS.gene50092:CDS
GTCGGAGTCGCAAGCTCAGT+GGG 0.542417 4.3:-89806974 MS.gene50092:CDS
AGTAAAACCGTGTCTTCTGA+AGG 0.542673 4.3:+89808297 None:intergenic
CTTGTTGGTCTTGGTTTGGG+AGG 0.545241 4.3:-89810258 MS.gene50092:CDS
AACAGAAGAAGGAAAGATGT+GGG 0.548715 4.3:+89808480 None:intergenic
TGGTGGAATGTTATGTCCAT+TGG 0.548940 4.3:-89806945 MS.gene50092:CDS
TTATGTCCATTGGTAGCAGT+GGG 0.549840 4.3:-89806935 MS.gene50092:CDS
ACCGGAAAACACAACCATCC+AGG 0.553864 4.3:+89810179 None:intergenic
GATAGAATGTTAATGGGAGA+AGG 0.555946 4.3:+89807833 None:intergenic
AGTGAAGTTGAATCTCCTAA+AGG 0.556412 4.3:-89808261 MS.gene50092:CDS
GGAATGATTTCTAATTTAGG+TGG 0.556564 4.3:-89808240 MS.gene50092:CDS
ACCAAGTTTATCCACTGCTA+CGG 0.557857 4.3:+89807900 None:intergenic
TGAGCTTGCGACTCCGACAC+CGG 0.560176 4.3:+89806979 None:intergenic
CAGGTACCTCTATTAGGAGC+GGG 0.563187 4.3:+89810198 None:intergenic
GTTATGTCCATTGGTAGCAG+TGG 0.563497 4.3:-89806936 MS.gene50092:CDS
CTCCCAAACCAAGACCAACA+AGG 0.572336 4.3:+89810259 None:intergenic
AGAAACCACGAGGACAAGAC+AGG 0.574791 4.3:+89810231 None:intergenic
GCCGTAGCAGTGGATAAACT+TGG 0.575560 4.3:-89807901 MS.gene50092:CDS
GAGCTACAATTACAAACAGA+AGG 0.576404 4.3:+89806879 None:intergenic
ATGACAGGGGAAGAAGTTGA+AGG 0.577013 4.3:-89810642 MS.gene50092:CDS
CAGATTGTGATGCCAAGACT+GGG 0.577346 4.3:-89808534 MS.gene50092:CDS
ACGGCTGACAAGAGGAGCCC+AGG 0.577551 4.3:+89807919 None:intergenic
AACTTTCTTGATGAGAGGAA+AGG 0.579795 4.3:+89810454 None:intergenic
AAACAGAAGAAGGAAAGATG+TGG 0.582964 4.3:+89808479 None:intergenic
TCCCAAACCAAGACCAACAA+GGG 0.583537 4.3:+89810260 None:intergenic
CCTCTTGTCAGCCGTAGCAG+TGG 0.584748 4.3:-89807911 MS.gene50092:CDS
TGCCAAGACTGGGTTGGAGA+TGG 0.585381 4.3:-89808524 MS.gene50092:CDS
TTAATTGGTGCTTACTCATG+GGG 0.587279 4.3:-89810402 MS.gene50092:CDS
ACTAAACCCACTGCTACCAA+TGG 0.588885 4.3:+89806929 None:intergenic
TGTCGGAGTCGCAAGCTCAG+TGG 0.589287 4.3:-89806975 MS.gene50092:CDS
GTCCTGCAGTTCAATCTGCA+TGG 0.595195 4.3:-89810479 MS.gene50092:CDS
CCCACATCAGTCAGAACCAC+CGG 0.596858 4.3:-89806998 MS.gene50092:CDS
TCCCAGGATGTAAGTTACAA+AGG 0.600242 4.3:-89808051 MS.gene50092:CDS
ACCGGTGGTTCTGACTGATG+TGG 0.601322 4.3:+89806997 None:intergenic
GCGGTCCTGTCTTGTCCTCG+TGG 0.604240 4.3:-89810236 MS.gene50092:CDS
TTGTTTCTGATCAACATGGA+AGG 0.605867 4.3:-89810377 MS.gene50092:CDS
CCACTGCTACGGCTGACAAG+AGG 0.607873 4.3:+89807911 None:intergenic
TCCTAATAGAGGTACCTGGA+TGG 0.607966 4.3:-89810193 MS.gene50092:CDS
ACTCAGAGGTCAGCAAAACA+AGG 0.609849 4.3:+89808121 None:intergenic
ATTGTCAGAAATAAGGACAC+CGG 0.619613 4.3:+89808347 None:intergenic
TGACAACCCTTCAGAAGACA+CGG 0.630940 4.3:-89808304 MS.gene50092:CDS
TCAGTCAGAACCACCGGTGT+CGG 0.632605 4.3:-89806992 MS.gene50092:CDS
GGCATTGTTTCTGATCAACA+TGG 0.634211 4.3:-89810381 MS.gene50092:CDS
ATTGCAGACAGAGAAGTCCC+AGG 0.635734 4.3:-89808067 MS.gene50092:CDS
CCGGTGGTTCTGACTGATGT+GGG 0.637225 4.3:+89806998 None:intergenic
AAACACTGCCCATAATAGAA+GGG 0.640033 4.3:+89808170 None:intergenic
GTAAAACCGTGTCTTCTGAA+GGG 0.641040 4.3:+89808298 None:intergenic
TCAGAAATAAGGACACCGGA+AGG 0.641575 4.3:+89808351 None:intergenic
TTGTGATGCCAAGACTGGGT+TGG 0.641893 4.3:-89808530 MS.gene50092:CDS
GTAGCAGTGGGTTTAGTACA+CGG 0.644415 4.3:-89806923 MS.gene50092:CDS
CCAGGTACCTCTATTAGGAG+CGG 0.650113 4.3:+89810197 None:intergenic
GTACATTATTATAGATGACA+GGG 0.654126 4.3:-89810656 None:intergenic
ATAAATATACACGATTGTGA+AGG 0.658702 4.3:+89807753 None:intergenic
GCTTGCGACTCCGACACCGG+TGG 0.668961 4.3:+89806982 None:intergenic
CGTGTATATTTATGCCCCAG+AGG 0.676515 4.3:-89807743 MS.gene50092:intron
TCATCATGTCTACACATCGT+CGG 0.680005 4.3:+89806772 None:intergenic
TCTGCCTGAAGACCTAACAA+CGG 0.688127 4.3:-89807812 MS.gene50092:CDS
AAGCAAGGAGACATAATTTG+GGG 0.695881 4.3:+89810293 None:intergenic
TACATTATTATAGATGACAG+GGG 0.709639 4.3:-89810655 None:intergenic
GCATAAAGACATTACCTCTG+GGG 0.717940 4.3:+89807729 None:intergenic
AACAAATTCAAGAAACCACG+AGG 0.737456 4.3:+89810221 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATAATTGAAAAGA+TGG - chr4.3:89807390-89807409 MS.gene50092:intron 10.0%
!! AGAAAAAATAAAGCAAATTA+TGG - chr4.3:89810131-89810150 MS.gene50092:intron 15.0%
!! ATTAGAACTAAATTAAATCA+AGG + chr4.3:89808463-89808482 None:intergenic 15.0%
!! TATAAGAAAAGATAGAAATA+TGG - chr4.3:89807532-89807551 MS.gene50092:intron 15.0%
!! TCAATTTAAATAGTTGTAAA+CGG - chr4.3:89808550-89808569 MS.gene50092:intron 15.0%
!! TTTACAACTATTTAAATTGA+GGG + chr4.3:89808550-89808569 None:intergenic 15.0%
!!! AAGTTCAAAATTTGAAATAA+AGG + chr4.3:89808389-89808408 None:intergenic 15.0%
!!! TAATTTGCTTTATTTTTTCT+AGG + chr4.3:89810131-89810150 None:intergenic 15.0%
!!! TTAATTAATTTTGAATGATC+TGG - chr4.3:89809725-89809744 MS.gene50092:intron 15.0%
!! AAAGGAATGATTTCTAATTT+AGG - chr4.3:89809180-89809199 MS.gene50092:intron 20.0%
!! AAATTAAATCAAGGAGATTT+GGG + chr4.3:89808454-89808473 None:intergenic 20.0%
!! AAATTAGAAATCATTCCTTT+AGG + chr4.3:89809180-89809199 None:intergenic 20.0%
!! AAGAATGTTATTATCTTAAG+GGG - chr4.3:89809911-89809930 MS.gene50092:intron 20.0%
!! AGAAGAATGTTATTATCTTA+AGG - chr4.3:89809909-89809928 MS.gene50092:intron 20.0%
!! ATATATAATTGAAAAGATGG+TGG - chr4.3:89807393-89807412 MS.gene50092:intron 20.0%
!! GAAGAATGTTATTATCTTAA+GGG - chr4.3:89809910-89809929 MS.gene50092:intron 20.0%
!! GTCTAATTCTTCTTTATAAA+TGG - chr4.3:89810359-89810378 MS.gene50092:CDS 20.0%
!! GTTTACAACTATTTAAATTG+AGG + chr4.3:89808551-89808570 None:intergenic 20.0%
!! TAAATTAAATCAAGGAGATT+TGG + chr4.3:89808455-89808474 None:intergenic 20.0%
!! TAATTCTTCTTTATAAATGG+TGG - chr4.3:89810362-89810381 MS.gene50092:CDS 20.0%
!!! AATGTGTTTTACTTAACAAA+GGG - chr4.3:89807914-89807933 MS.gene50092:CDS 20.0%
!!! TATACATTACTTAAGTCTTT+TGG + chr4.3:89808637-89808656 None:intergenic 20.0%
!!! TCATATTTTAGTAGTCTTAT+TGG + chr4.3:89809873-89809892 None:intergenic 20.0%
!!! TCTTTTCTTATACTTTTTCT+TGG + chr4.3:89807524-89807543 None:intergenic 20.0%
!!! TTTCTTAACCAATTCTTTTA+CGG - chr4.3:89810039-89810058 MS.gene50092:intron 20.0%
! AAATAAAGGCTTAAGCAAAT+TGG + chr4.3:89808375-89808394 None:intergenic 25.0%
! AACAAATTCCGTAAAAGAAT+TGG + chr4.3:89810050-89810069 None:intergenic 25.0%
! AAGTACTATTGTATAGCAAT+TGG - chr4.3:89809835-89809854 MS.gene50092:intron 25.0%
! AAGTATGTAAGGAAAGAATA+CGG - chr4.3:89807868-89807887 MS.gene50092:CDS 25.0%
! AATAGTTCCTATCTAATAAC+TGG + chr4.3:89810286-89810305 None:intergenic 25.0%
! AATTCAAAAACAATGAGGTA+GGG + chr4.3:89810220-89810239 None:intergenic 25.0%
! ACAGCATTATTAACTTCAAA+TGG - chr4.3:89809985-89810004 MS.gene50092:intron 25.0%
! ATAAATATACACGATTGTGA+AGG + chr4.3:89809673-89809692 None:intergenic 25.0%
! CAATTTGATTGTCAGAAATA+AGG + chr4.3:89809086-89809105 None:intergenic 25.0%
! CAGTTAATTCAAAAACAATG+AGG + chr4.3:89810225-89810244 None:intergenic 25.0%
! CTTAATATTCAACAACAGTA+TGG + chr4.3:89809813-89809832 None:intergenic 25.0%
! TAAAATTCTTTCTTGCATGA+AGG + chr4.3:89808520-89808539 None:intergenic 25.0%
! TAAGTTACCACAAAGAAAAA+AGG - chr4.3:89810255-89810274 MS.gene50092:CDS 25.0%
! TAATTCAAAAACAATGAGGT+AGG + chr4.3:89810221-89810240 None:intergenic 25.0%
!! AGAAACAGAAAAAGTATGTA+AGG - chr4.3:89807857-89807876 MS.gene50092:CDS 25.0%
!! ATGTGTTTTACTTAACAAAG+GGG - chr4.3:89807915-89807934 MS.gene50092:CDS 25.0%
!! CAATGTGTTTTACTTAACAA+AGG - chr4.3:89807913-89807932 MS.gene50092:CDS 25.0%
!! TCATTTTGTAAAACAGAAGA+AGG + chr4.3:89808957-89808976 None:intergenic 25.0%
!! TTCAAATTTTGAACTTACCT+AGG - chr4.3:89808393-89808412 MS.gene50092:CDS 25.0%
!!! ATTCAACTTCACTTTTTCTT+GGG + chr4.3:89809155-89809174 None:intergenic 25.0%
!!! GGTAATGCTTTTTCATATTA+TGG - chr4.3:89809279-89809298 MS.gene50092:intron 25.0%
!!! TGTTTTGACAATTCTTAAAG+AGG + chr4.3:89810167-89810186 None:intergenic 25.0%
!!! TTCATAACAAGTGTTGTTTT+TGG - chr4.3:89806991-89807010 MS.gene50092:CDS 25.0%
!!! TTTTAGTAGTCTTATTGGAT+TGG + chr4.3:89809868-89809887 None:intergenic 25.0%
AAACAAATGCAAACTATACC+TGG - chr4.3:89810182-89810201 MS.gene50092:CDS 30.0%
AAATTAGGGTTAAGTGGTTT+GGG - chr4.3:89807416-89807435 MS.gene50092:intron 30.0%
AATATAGTGAGTAGTGAGAT+AGG - chr4.3:89807833-89807852 MS.gene50092:CDS 30.0%
AGTCAAATCACTATTTACAG+AGG - chr4.3:89807494-89807513 MS.gene50092:intron 30.0%
AGTTGGTTAGTATTTAGATG+AGG - chr4.3:89807808-89807827 MS.gene50092:CDS 30.0%
ATGATGTTACTCTCATTTGT+AGG - chr4.3:89806922-89806941 MS.gene50092:CDS 30.0%
ATTCAACAACAGTATGGAAT+AGG + chr4.3:89809807-89809826 None:intergenic 30.0%
GATGAAGCTCTTATAACATT+AGG - chr4.3:89806832-89806851 MS.gene50092:CDS 30.0%
GGAATGATTTCTAATTTAGG+TGG - chr4.3:89809183-89809202 MS.gene50092:intron 30.0%
GGCTAAATGATGAAAGTAAA+TGG + chr4.3:89808715-89808734 None:intergenic 30.0%
GTAACAAAATGAGACATAAG+AGG - chr4.3:89807785-89807804 MS.gene50092:CDS 30.0%
TATGAAACTTTCTTGATGAG+AGG + chr4.3:89806977-89806996 None:intergenic 30.0%
TGACAAATCATAGAGATGAT+GGG - chr4.3:89808843-89808862 MS.gene50092:intron 30.0%
TTACTTTCATCATTTAGCCT+AGG - chr4.3:89808716-89808735 MS.gene50092:intron 30.0%
! GCTCTTATAACATTAGGTTT+TGG - chr4.3:89806838-89806857 MS.gene50092:CDS 30.0%
! GTCTCATTTTGTTACATTTG+CGG + chr4.3:89807780-89807799 None:intergenic 30.0%
! TTATGGCTTTACTTGTCTTA+AGG - chr4.3:89808745-89808764 MS.gene50092:intron 30.0%
! TTGATATTAAGGCTTTGTCT+GGG - chr4.3:89807986-89808005 MS.gene50092:intron 30.0%
!! ACTATTTCTTTTCAACTCAG+AGG + chr4.3:89809319-89809338 None:intergenic 30.0%
!! CAAAAGTACTCTTCAAAGTA+AGG - chr4.3:89808216-89808235 MS.gene50092:CDS 30.0%
!! GGAGGTTTTTCTTTTTTCAT+TGG - chr4.3:89808054-89808073 MS.gene50092:CDS 30.0%
!! TGAAAAGATGGTGGAAATTA+GGG - chr4.3:89807402-89807421 MS.gene50092:intron 30.0%
!! TTGAAAAGATGGTGGAAATT+AGG - chr4.3:89807401-89807420 MS.gene50092:intron 30.0%
!! TTGTTTTACTATACCATTCC+CGG - chr4.3:89809442-89809461 MS.gene50092:intron 30.0%
!!! ATAACAAGTGTTGTTTTTGG+CGG - chr4.3:89806994-89807013 MS.gene50092:CDS 30.0%
!!! CTTACTTTGAAGAGTACTTT+TGG + chr4.3:89808218-89808237 None:intergenic 30.0%
!!! GATTCAACTTCACTTTTTCT+TGG + chr4.3:89809156-89809175 None:intergenic 30.0%
!!! GTTTTTATTGCTAGTTTTGC+AGG - chr4.3:89809396-89809415 MS.gene50092:intron 30.0%
!!! TTCAACTTCACTTTTTCTTG+GGG + chr4.3:89809154-89809173 None:intergenic 30.0%
AAAACACTGCCCATAATAGA+AGG + chr4.3:89809257-89809276 None:intergenic 35.0%
AAACACTGCCCATAATAGAA+GGG + chr4.3:89809256-89809275 None:intergenic 35.0%
AAACAGAAGAAGGAAAGATG+TGG + chr4.3:89808947-89808966 None:intergenic 35.0%
AAATGAGACATAAGAGGAGT+TGG - chr4.3:89807791-89807810 MS.gene50092:CDS 35.0%
AACAAATTCAAGAAACCACG+AGG + chr4.3:89807205-89807224 None:intergenic 35.0%
AACAGAAGAAGGAAAGATGT+GGG + chr4.3:89808946-89808965 None:intergenic 35.0%
AACTTTCTTGATGAGAGGAA+AGG + chr4.3:89806972-89806991 None:intergenic 35.0%
AAGCAAGGAGACATAATTTG+GGG + chr4.3:89807133-89807152 None:intergenic 35.0%
AAGGTCAACCCTTCTATTAT+GGG - chr4.3:89809245-89809264 MS.gene50092:intron 35.0%
AATACGGATCTCTTGAATCA+AGG - chr4.3:89807884-89807903 MS.gene50092:CDS 35.0%
AATGGCAAAAAACTTCCTTC+CGG - chr4.3:89809057-89809076 MS.gene50092:intron 35.0%
ACAAGCAAGGAGACATAATT+TGG + chr4.3:89807135-89807154 None:intergenic 35.0%
ACACGTTTCCTACATATTGA+AGG + chr4.3:89808088-89808107 None:intergenic 35.0%
ACCAAAACCCTTCAATATGT+AGG - chr4.3:89808077-89808096 MS.gene50092:CDS 35.0%
ACCTTTGTAACTTACATCCT+GGG + chr4.3:89809376-89809395 None:intergenic 35.0%
AGTGAAGTTGAATCTCCTAA+AGG - chr4.3:89809162-89809181 MS.gene50092:intron 35.0%
ATATGCGAGCTCCAAATAAA+AGG + chr4.3:89809638-89809657 None:intergenic 35.0%
ATATGTAGGAAACGTGTTGA+AGG - chr4.3:89808091-89808110 MS.gene50092:CDS 35.0%
ATCGTGTATCATTGTAACAG+AGG + chr4.3:89807683-89807702 None:intergenic 35.0%
ATTGTCAGAAATAAGGACAC+CGG + chr4.3:89809079-89809098 None:intergenic 35.0%
CAAGCAAGGAGACATAATTT+GGG + chr4.3:89807134-89807153 None:intergenic 35.0%
CACAGAGAACTAACTTTGTA+AGG + chr4.3:89810089-89810108 None:intergenic 35.0%
CACGTTTCCTACATATTGAA+GGG + chr4.3:89808087-89808106 None:intergenic 35.0%
CAGACAAAGCCTTAATATCA+AGG + chr4.3:89807987-89808006 None:intergenic 35.0%
CAGGCAGATAGAATGTTAAT+GGG + chr4.3:89809599-89809618 None:intergenic 35.0%
CTGACAAATCATAGAGATGA+TGG - chr4.3:89808842-89808861 MS.gene50092:intron 35.0%
CTTTCGTCATGTATAAGACA+TGG - chr4.3:89810316-89810335 MS.gene50092:CDS 35.0%
GAAATTAGGGTTAAGTGGTT+TGG - chr4.3:89807415-89807434 MS.gene50092:intron 35.0%
GAGAAATCTTGTGCATTCTT+CGG - chr4.3:89809766-89809785 MS.gene50092:intron 35.0%
GAGACAATAGCAAGACTAAA+TGG - chr4.3:89809039-89809058 MS.gene50092:intron 35.0%
GAGCTACAATTACAAACAGA+AGG + chr4.3:89810547-89810566 None:intergenic 35.0%
GATAGAATGTTAATGGGAGA+AGG + chr4.3:89809593-89809612 None:intergenic 35.0%
GCAATATCGCCTTGATATTA+AGG - chr4.3:89807975-89807994 MS.gene50092:intron 35.0%
GGACAGAGAACTAAAAAAAC+CGG + chr4.3:89807112-89807131 None:intergenic 35.0%
TAAAGCCATAACAGTTTCCT+AGG + chr4.3:89808736-89808755 None:intergenic 35.0%
TCAGGCAGATAGAATGTTAA+TGG + chr4.3:89809600-89809619 None:intergenic 35.0%
TCCTTTCACCCAAATTATCA+AGG - chr4.3:89809226-89809245 MS.gene50092:intron 35.0%
TCTCTGTCTGCAATTTATCT+GGG + chr4.3:89809350-89809369 None:intergenic 35.0%
TGCATAAAGACATTACCTCT+GGG + chr4.3:89809698-89809717 None:intergenic 35.0%
TTCTCTGTCTGCAATTTATC+TGG + chr4.3:89809351-89809370 None:intergenic 35.0%
TTCTTGCATGAAGGAATGAT+AGG + chr4.3:89808511-89808530 None:intergenic 35.0%
TTGAACTTACCTAGGATTCA+AGG - chr4.3:89808401-89808420 MS.gene50092:CDS 35.0%
TTGCATAAAGACATTACCTC+TGG + chr4.3:89809699-89809718 None:intergenic 35.0%
TTGTTCTACCTTTCAAGCAT+AGG + chr4.3:89808999-89809018 None:intergenic 35.0%
TTTAGCCTAGGAAACTGTTA+TGG - chr4.3:89808728-89808747 MS.gene50092:intron 35.0%
! AACTGAAGCAACTAACGTTT+TGG - chr4.3:89809017-89809036 MS.gene50092:intron 35.0%
! AAGGGTTGACCTTGATAATT+TGG + chr4.3:89809238-89809257 None:intergenic 35.0%
! ACCTTGATAATTTGGGTGAA+AGG + chr4.3:89809230-89809249 None:intergenic 35.0%
! AGGGTTGACCTTGATAATTT+GGG + chr4.3:89809237-89809256 None:intergenic 35.0%
! CATCATCTCTATGATTTGTC+AGG + chr4.3:89808844-89808863 None:intergenic 35.0%
! CTATTATGGGCAGTGTTTTT+CGG - chr4.3:89809258-89809277 MS.gene50092:intron 35.0%
! CTTGATATTAAGGCTTTGTC+TGG - chr4.3:89807985-89808004 MS.gene50092:intron 35.0%
! GGTTTCACAGCAATGTTTTT+CGG - chr4.3:89810337-89810356 MS.gene50092:CDS 35.0%
! GTAATTGTAGCTCTTGTTTC+AGG - chr4.3:89810554-89810573 MS.gene50092:intron 35.0%
! GTCTTTTGGCAGTTAATTGT+TGG + chr4.3:89808623-89808642 None:intergenic 35.0%
! GTTAATTGGTGCTTACTCAT+GGG - chr4.3:89807020-89807039 MS.gene50092:intron 35.0%
! GTTAATTGTTGGCTACACAT+AGG + chr4.3:89808612-89808631 None:intergenic 35.0%
! TCATTTTGTTACATTTGCGG+AGG + chr4.3:89807777-89807796 None:intergenic 35.0%
! TCCTACATATTGAAGGGTTT+TGG + chr4.3:89808081-89808100 None:intergenic 35.0%
! TGTTAATTGGTGCTTACTCA+TGG - chr4.3:89807019-89807038 MS.gene50092:intron 35.0%
! TGTTTTACTATACCATTCCC+GGG - chr4.3:89809443-89809462 MS.gene50092:intron 35.0%
! TTAATTGGTGCTTACTCATG+GGG - chr4.3:89807021-89807040 MS.gene50092:intron 35.0%
!! CTTCCTTTGGTGTTCTAAAA+TGG + chr4.3:89807949-89807968 None:intergenic 35.0%
!! TACTTAAGAGTGTCTACACT+AGG - chr4.3:89807729-89807748 MS.gene50092:intron 35.0%
!! TTGTTTCTGATCAACATGGA+AGG - chr4.3:89807046-89807065 MS.gene50092:intron 35.0%
!!! CATTTTAGAACACCAAAGGA+AGG - chr4.3:89807947-89807966 MS.gene50092:intron 35.0%
!!! GTTTTTGGCGGAATGTTAAT+TGG - chr4.3:89807006-89807025 MS.gene50092:CDS 35.0%
!!! TTTGAAGAGTACTTTTGGAG+AGG + chr4.3:89808213-89808232 None:intergenic 35.0%
!!! TTTTGAAGCATCACTTGCTT+GGG - chr4.3:89807287-89807306 MS.gene50092:intron 35.0%
!!! TTTTTGAAGCATCACTTGCT+TGG - chr4.3:89807286-89807305 MS.gene50092:intron 35.0%
AAAAACCTCCACACAAGATG+GGG + chr4.3:89808044-89808063 None:intergenic 40.0%
AAGAAGGAAAGATGTGGGAA+GGG + chr4.3:89808941-89808960 None:intergenic 40.0%
AAGGGAACGAAAAACAAGCA+AGG + chr4.3:89807148-89807167 None:intergenic 40.0%
AATCATACATTTCCCGGGAA+TGG + chr4.3:89809458-89809477 None:intergenic 40.0%
ACACAGTATCTTGCAGTTCT+TGG + chr4.3:89810616-89810635 None:intergenic 40.0%
ACACTTAGACCTTGAATCCT+AGG + chr4.3:89808413-89808432 None:intergenic 40.0%
ACCAAGTTTATCCACTGCTA+CGG + chr4.3:89809526-89809545 None:intergenic 40.0%
AGAAAAACCTCCACACAAGA+TGG + chr4.3:89808046-89808065 None:intergenic 40.0%
AGGATTCAAGGTCTAAGTGT+AGG - chr4.3:89808413-89808432 MS.gene50092:CDS 40.0%
AGTAAAACCGTGTCTTCTGA+AGG + chr4.3:89809129-89809148 None:intergenic 40.0%
ATATTGCACTCACCTTCCTT+TGG + chr4.3:89807962-89807981 None:intergenic 40.0%
ATCTGCAAGGAACATTGCAT+TGG + chr4.3:89808874-89808893 None:intergenic 40.0%
CAAATAAAAGGCCCGTTGTT+AGG + chr4.3:89809626-89809645 None:intergenic 40.0%
CAAGGTCAACCCTTCTATTA+TGG - chr4.3:89809244-89809263 MS.gene50092:intron 40.0%
CACCTTTGTAACTTACATCC+TGG + chr4.3:89809377-89809396 None:intergenic 40.0%
CATTGTAACAGAGGAAAGCT+AGG + chr4.3:89807674-89807693 None:intergenic 40.0%
CCAAGATACCTATGCTTGAA+AGG - chr4.3:89808988-89809007 MS.gene50092:intron 40.0%
CCTTTCAAGCATAGGTATCT+TGG + chr4.3:89808991-89809010 None:intergenic 40.0%
CTACGAGTTTAACTGCAAAC+TGG + chr4.3:89808306-89808325 None:intergenic 40.0%
GAAAAACCTCCACACAAGAT+GGG + chr4.3:89808045-89808064 None:intergenic 40.0%
GATCAACATGGAAGGAGAAA+AGG - chr4.3:89807054-89807073 MS.gene50092:intron 40.0%
GCATAAAGACATTACCTCTG+GGG + chr4.3:89809697-89809716 None:intergenic 40.0%
GCATCAATCATACATTTCCC+GGG + chr4.3:89809463-89809482 None:intergenic 40.0%
GGATCTCTTGAATCAAGGAA+AGG - chr4.3:89807889-89807908 MS.gene50092:CDS 40.0%
GGCATCAATCATACATTTCC+CGG + chr4.3:89809464-89809483 None:intergenic 40.0%
GGCTGAGATTTGAATCATCT+AGG + chr4.3:89808285-89808304 None:intergenic 40.0%
GGTCTCACCAGTTATTAGAT+AGG - chr4.3:89810276-89810295 MS.gene50092:CDS 40.0%
GTAAAACCGTGTCTTCTGAA+GGG + chr4.3:89809128-89809147 None:intergenic 40.0%
GTGTAGACACTCTTAAGTAC+TGG + chr4.3:89807728-89807747 None:intergenic 40.0%
TCCCAGGATGTAAGTTACAA+AGG - chr4.3:89809372-89809391 MS.gene50092:intron 40.0%
TCTACACTAGGAGAGAAAAG+AGG - chr4.3:89807741-89807760 MS.gene50092:intron 40.0%
TCTGCAAGGAACATTGCATT+GGG + chr4.3:89808873-89808892 None:intergenic 40.0%
TGCATGAAGGAATGATAGGA+AGG + chr4.3:89808507-89808526 None:intergenic 40.0%
TGGTGGAAATTAGGGTTAAG+TGG - chr4.3:89807410-89807429 MS.gene50092:intron 40.0%
TGGTGGAATGTTATGTCCAT+TGG - chr4.3:89810478-89810497 MS.gene50092:CDS 40.0%
TGGTTGGATTTCAGAAGCAA+TGG - chr4.3:89806897-89806916 MS.gene50092:CDS 40.0%
TGTACCAACAGTCCAAAAAC+CGG + chr4.3:89807265-89807284 None:intergenic 40.0%
! ATTGTTGGCTACACATAGGA+AGG + chr4.3:89808608-89808627 None:intergenic 40.0%
! CTAACAACGGGCCTTTTATT+TGG - chr4.3:89809624-89809643 MS.gene50092:intron 40.0%
! GTAGCTCTGTGCACAAAATT+TGG + chr4.3:89809485-89809504 None:intergenic 40.0%
! GTAGGGAGTAATTTAAAGCC+AGG + chr4.3:89810203-89810222 None:intergenic 40.0%
! GTGTTGAAGGAGGATTTTGA+GGG - chr4.3:89808104-89808123 MS.gene50092:CDS 40.0%
! TGGTTGTGTTTTCCGGTTTT+TGG - chr4.3:89807250-89807269 MS.gene50092:intron 40.0%
! TTATGTCCATTGGTAGCAGT+GGG - chr4.3:89810488-89810507 MS.gene50092:intron 40.0%
! TTCTTTCCGTTTGAGACCAT+GGG - chr4.3:89810590-89810609 MS.gene50092:intron 40.0%
!! CTAGGCTTTGTTTGAGTGTT+AGG + chr4.3:89808267-89808286 None:intergenic 40.0%
!! CTTGTTTTTCGTTCCCTTGT+TGG - chr4.3:89807150-89807169 MS.gene50092:intron 40.0%
!! GCTTTGTTTGAGTGTTAGGA+GGG + chr4.3:89808263-89808282 None:intergenic 40.0%
!! GGCATTGTTTCTGATCAACA+TGG - chr4.3:89807042-89807061 MS.gene50092:intron 40.0%
!! TCAAGTTTTATCGCACCAAG+TGG + chr4.3:89807603-89807622 None:intergenic 40.0%
!! TTCTGAAATCCAACCAATGC+CGG + chr4.3:89806893-89806912 None:intergenic 40.0%
!! TTTTCCGGTTTTTGGACTGT+TGG - chr4.3:89807258-89807277 MS.gene50092:intron 40.0%
!!! GGTGAGACCTTTTTTCTTTG+TGG + chr4.3:89810265-89810284 None:intergenic 40.0%
!!! GTGCCATTTTAGAACACCAA+AGG - chr4.3:89807943-89807962 MS.gene50092:intron 40.0%
ACCATCCAGGTACCTCTATT+AGG + chr4.3:89807234-89807253 None:intergenic 45.0%
ACTAAACCCACTGCTACCAA+TGG + chr4.3:89810497-89810516 None:intergenic 45.0%
ACTCAGAGGTCAGCAAAACA+AGG + chr4.3:89809305-89809324 None:intergenic 45.0%
ATACTCGTTCTCGTTTACGC+CGG - chr4.3:89806871-89806890 MS.gene50092:CDS 45.0%
ATGACAGGGGAAGAAGTTGA+AGG - chr4.3:89806781-89806800 MS.gene50092:CDS 45.0%
CAGATTGTGATGCCAAGACT+GGG - chr4.3:89808889-89808908 MS.gene50092:intron 45.0%
CGTGTATATTTATGCCCCAG+AGG - chr4.3:89809680-89809699 MS.gene50092:intron 45.0%
CTTTGTCTGGGTGTTTGGAA+AGG - chr4.3:89807998-89808017 MS.gene50092:intron 45.0%
GAAGAAGGAAAGATGTGGGA+AGG + chr4.3:89808942-89808961 None:intergenic 45.0%
GGTCTAAGTGTAGGAGAATC+AGG - chr4.3:89808422-89808441 MS.gene50092:CDS 45.0%
GTTTGAGTGTTAGGAGGGAA+AGG + chr4.3:89808258-89808277 None:intergenic 45.0%
GTTTGGAAAGGAAGGGGAAA+GGG - chr4.3:89808010-89808029 MS.gene50092:intron 45.0%
TCAGAAATAAGGACACCGGA+AGG + chr4.3:89809075-89809094 None:intergenic 45.0%
TCCCAAACCAAGACCAACAA+GGG + chr4.3:89807166-89807185 None:intergenic 45.0%
TCTGCCTGAAGACCTAACAA+CGG - chr4.3:89809611-89809630 MS.gene50092:intron 45.0%
TCTGGGTGTTTGGAAAGGAA+GGG - chr4.3:89808003-89808022 MS.gene50092:intron 45.0%
TCTTGGCATCACAATCTGCA+AGG + chr4.3:89808887-89808906 None:intergenic 45.0%
TGACAACCCTTCAGAAGACA+CGG - chr4.3:89809119-89809138 MS.gene50092:intron 45.0%
TGTAGGAAACGTGTTGAAGG+AGG - chr4.3:89808094-89808113 MS.gene50092:CDS 45.0%
TGTTTGGAAAGGAAGGGGAA+AGG - chr4.3:89808009-89808028 MS.gene50092:intron 45.0%
TTCCATGCAGATTGAACTGC+AGG + chr4.3:89806949-89806968 None:intergenic 45.0%
TTTATCGCACCAAGTGGAGT+CGG + chr4.3:89807597-89807616 None:intergenic 45.0%
TTTGGAAAGGAAGGGGAAAG+GGG - chr4.3:89808011-89808030 MS.gene50092:intron 45.0%
TTTGTTCCCGCTCCTAATAG+AGG - chr4.3:89807219-89807238 MS.gene50092:intron 45.0%
! ACCTGGATGGTTGTGTTTTC+CGG - chr4.3:89807243-89807262 MS.gene50092:intron 45.0%
! AGCAAAGAGAGCAGTTCTGA+TGG - chr4.3:89807466-89807485 MS.gene50092:intron 45.0%
! ATTTTGTGCACAGAGCTACC+TGG - chr4.3:89809486-89809505 MS.gene50092:intron 45.0%
! CATAGGTATCTTGGTGACTC+TGG + chr4.3:89808982-89809001 None:intergenic 45.0%
! CGTGTTGAAGGAGGATTTTG+AGG - chr4.3:89808103-89808122 MS.gene50092:CDS 45.0%
! GTAGCAGTGGGTTTAGTACA+CGG - chr4.3:89810500-89810519 MS.gene50092:intron 45.0%
! GTTATGTCCATTGGTAGCAG+TGG - chr4.3:89810487-89810506 MS.gene50092:intron 45.0%
! GTTCTTTCCGTTTGAGACCA+TGG - chr4.3:89810589-89810608 MS.gene50092:intron 45.0%
! TAAGGCTTTGTCTGGGTGTT+TGG - chr4.3:89807993-89808012 MS.gene50092:intron 45.0%
! TTTCGTTCCCTTGTTGGTCT+TGG - chr4.3:89807156-89807175 MS.gene50092:intron 45.0%
! TTTTGTGCACAGAGCTACCT+GGG - chr4.3:89809487-89809506 MS.gene50092:intron 45.0%
!! GGCTTTGTTTGAGTGTTAGG+AGG + chr4.3:89808264-89808283 None:intergenic 45.0%
!! TCCCTTGTTGGTCTTGGTTT+GGG - chr4.3:89807162-89807181 MS.gene50092:intron 45.0%
!! TCCTAATAGAGGTACCTGGA+TGG - chr4.3:89807230-89807249 MS.gene50092:intron 45.0%
!! TTCCCTTGTTGGTCTTGGTT+TGG - chr4.3:89807161-89807180 MS.gene50092:intron 45.0%
ACCGGAAAACACAACCATCC+AGG + chr4.3:89807247-89807266 None:intergenic 50.0%
AGAAACCACGAGGACAAGAC+AGG + chr4.3:89807195-89807214 None:intergenic 50.0%
AGCTCAGTGGGTAGAATTGG+TGG - chr4.3:89810461-89810480 MS.gene50092:CDS 50.0%
AGTGTTAGGAGGGAAAGGAG+GGG + chr4.3:89808253-89808272 None:intergenic 50.0%
ATCTTGCAGTTCTTGGCCCA+TGG + chr4.3:89810609-89810628 None:intergenic 50.0%
ATTGCAGACAGAGAAGTCCC+AGG - chr4.3:89809356-89809375 MS.gene50092:intron 50.0%
CAGGTACCTCTATTAGGAGC+GGG + chr4.3:89807228-89807247 None:intergenic 50.0%
CATGAACTGCGTGCAAAGCT+AGG + chr4.3:89807642-89807661 None:intergenic 50.0%
CCAGGTACCTCTATTAGGAG+CGG + chr4.3:89807229-89807248 None:intergenic 50.0%
CTCCCAAACCAAGACCAACA+AGG + chr4.3:89807167-89807186 None:intergenic 50.0%
CTGCCTGAAGACCTAACAAC+GGG - chr4.3:89809612-89809631 MS.gene50092:intron 50.0%
CTGGGTGTTTGGAAAGGAAG+GGG - chr4.3:89808004-89808023 MS.gene50092:intron 50.0%
GAGTAGATCCCCATCTTGTG+TGG - chr4.3:89808033-89808052 MS.gene50092:CDS 50.0%
GAGTGTTAGGAGGGAAAGGA+GGG + chr4.3:89808254-89808273 None:intergenic 50.0%
GCAAGCTCAGTGGGTAGAAT+TGG - chr4.3:89810458-89810477 MS.gene50092:CDS 50.0%
GCAGATTGTGATGCCAAGAC+TGG - chr4.3:89808888-89808907 MS.gene50092:intron 50.0%
GCCGTAGCAGTGGATAAACT+TGG - chr4.3:89809522-89809541 MS.gene50092:intron 50.0%
GCTACTGTTACTGCTACTGC+CGG - chr4.3:89807090-89807109 MS.gene50092:intron 50.0%
GGCTACACATAGGAAGGAAG+TGG + chr4.3:89808602-89808621 None:intergenic 50.0%
GTCCTGCAGTTCAATCTGCA+TGG - chr4.3:89806944-89806963 MS.gene50092:CDS 50.0%
GTCTGGGTGTTTGGAAAGGA+AGG - chr4.3:89808002-89808021 MS.gene50092:intron 50.0%
TAGATCCCCATCTTGTGTGG+AGG - chr4.3:89808036-89808055 MS.gene50092:CDS 50.0%
TCTTGGCCCATGGTCTCAAA+CGG + chr4.3:89810599-89810618 None:intergenic 50.0%
TGAGTGTTAGGAGGGAAAGG+AGG + chr4.3:89808255-89808274 None:intergenic 50.0%
TTGTGATGCCAAGACTGGGT+TGG - chr4.3:89808893-89808912 MS.gene50092:intron 50.0%
!! CTTGTTGGTCTTGGTTTGGG+AGG - chr4.3:89807165-89807184 MS.gene50092:intron 50.0%
ACCAAGTGGAGTCGGCTACA+TGG + chr4.3:89807589-89807608 None:intergenic 55.0%
AGCCATCTCCAACCCAGTCT+TGG + chr4.3:89808904-89808923 None:intergenic 55.0%
AGGCCCGTTGTTAGGTCTTC+AGG + chr4.3:89809618-89809637 None:intergenic 55.0%
CCCACATCAGTCAGAACCAC+CGG - chr4.3:89810425-89810444 MS.gene50092:CDS 55.0%
GTTCTCGTTTACGCCGGCAT+TGG - chr4.3:89806877-89806896 MS.gene50092:CDS 55.0%
TCAGTCAGAACCACCGGTGT+CGG - chr4.3:89810431-89810450 MS.gene50092:CDS 55.0%
! TCCATGTAGCCGACTCCACT+TGG - chr4.3:89807585-89807604 MS.gene50092:intron 55.0%
! TGCCAAGACTGGGTTGGAGA+TGG - chr4.3:89808899-89808918 MS.gene50092:intron 55.0%
!! ACCGGTGGTTCTGACTGATG+TGG + chr4.3:89810429-89810448 None:intergenic 55.0%
!! CCGCTCCTAATAGAGGTACC+TGG - chr4.3:89807226-89807245 MS.gene50092:intron 55.0%
!! CCGGTGGTTCTGACTGATGT+GGG + chr4.3:89810428-89810447 None:intergenic 55.0%
!! GTTGGTCTTGGTTTGGGAGG+CGG - chr4.3:89807168-89807187 MS.gene50092:intron 55.0%
!! TCGTTTACGCCGGCATTGGT+TGG - chr4.3:89806881-89806900 MS.gene50092:CDS 55.0%
CCACTGCTACGGCTGACAAG+AGG + chr4.3:89809515-89809534 None:intergenic 60.0%
CCTCTTGTCAGCCGTAGCAG+TGG - chr4.3:89809512-89809531 MS.gene50092:intron 60.0%
GTCGGAGTCGCAAGCTCAGT+GGG - chr4.3:89810449-89810468 MS.gene50092:CDS 60.0%
TGAGCTTGCGACTCCGACAC+CGG + chr4.3:89810447-89810466 None:intergenic 60.0%
TGTCGGAGTCGCAAGCTCAG+TGG - chr4.3:89810448-89810467 MS.gene50092:CDS 60.0%
ACGGCTGACAAGAGGAGCCC+AGG + chr4.3:89809507-89809526 None:intergenic 65.0%
GCGGTCCTGTCTTGTCCTCG+TGG - chr4.3:89807187-89807206 MS.gene50092:intron 65.0%
GCTTGCGACTCCGACACCGG+TGG + chr4.3:89810444-89810463 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 89806781 89810664 89806781 ID=MS.gene50092
chr4.3 mRNA 89806781 89810664 89806781 ID=MS.gene50092.t1;Parent=MS.gene50092
chr4.3 exon 89810592 89810664 89810592 ID=MS.gene50092.t1.exon1;Parent=MS.gene50092.t1
chr4.3 CDS 89810592 89810664 89810592 ID=cds.MS.gene50092.t1;Parent=MS.gene50092.t1
chr4.3 exon 89810137 89810501 89810137 ID=MS.gene50092.t1.exon2;Parent=MS.gene50092.t1
chr4.3 CDS 89810137 89810501 89810137 ID=cds.MS.gene50092.t1;Parent=MS.gene50092.t1
chr4.3 exon 89808028 89808553 89808028 ID=MS.gene50092.t1.exon3;Parent=MS.gene50092.t1
chr4.3 CDS 89808028 89808553 89808028 ID=cds.MS.gene50092.t1;Parent=MS.gene50092.t1
chr4.3 exon 89807744 89807946 89807744 ID=MS.gene50092.t1.exon4;Parent=MS.gene50092.t1
chr4.3 CDS 89807744 89807946 89807744 ID=cds.MS.gene50092.t1;Parent=MS.gene50092.t1
chr4.3 exon 89806781 89807026 89806781 ID=MS.gene50092.t1.exon5;Parent=MS.gene50092.t1
chr4.3 CDS 89806781 89807026 89806781 ID=cds.MS.gene50092.t1;Parent=MS.gene50092.t1
Gene Sequence

>MS.gene50092

ATGACAGGGGAAGAAGTTGAAGGCTCAAGCAGTAGCAGCAGCTATACAGTAGATGAAGCTCTTATAACATTAGGTTTTGGAAATTTTCAAATACTCGTTCTCGTTTACGCCGGCATTGGTTGGATTTCAGAAGCAATGGAAATGATGTTACTCTCATTTGTAGGTCCTGCAGTTCAATCTGCATGGAACCTTTCCTCTCATCAAGAAAGTTTCATAACAAGTGTTGTTTTTGGCGGAATGTTAATTGGTGCTTACTCATGGGGCATTGTTTCTGATCAACATGGAAGGAGAAAAGGATTTCTTATTACTGCTACTGTTACTGCTACTGCCGGTTTTTTTAGTTCTCTGTCCCCAAATTATGTCTCCTTGCTTGTTTTTCGTTCCCTTGTTGGTCTTGGTTTGGGAGGCGGTCCTGTCTTGTCCTCGTGGTTTCTTGAATTTGTTCCCGCTCCTAATAGAGGTACCTGGATGGTTGTGTTTTCCGGTTTTTGGACTGTTGGTACAATTTTTGAAGCATCACTTGCTTGGGTAAATTCATTATCTTTGTCTGTTTCTTCATTCATTGCATTCAAAGATTAAAATCTATGTTAATGTTTTTTTTTTTTTTTTTATATATATAATTGAAAAGATGGTGGAAATTAGGGTTAAGTGGTTTGGGCATGTAGAAAAGAATTATAGATTCTGTAGCAAAGAGAGCAGTTCTGATGGAGAATAGTCAAATCACTATTTACAGAGGAAGACCAAGAAAAAGTATAAGAAAAGATAGAAATATGGTTTATGATAGAACATTATAGCATAACTTGATCCATGTAGCCGACTCCACTTGGTGCGATAAAACTTGATTGTTCTTCTTTCTTTCCTAGCTTTGCACGCAGTTCATGATCTGTTTTCCTAGCTTTCCTCTGTTACAATGATACACGATAGACATACATATTGATTGTAAACCAGTACTTAAGAGTGTCTACACTAGGAGAGAAAAGAGGATAACTGACACCTCCGCAAATGTAACAAAATGAGACATAAGAGGAGTTGGTTAGTATTTAGATGAGGTTAATATAGTGAGTAGTGAGATAGGTAGAAACAGAAAAAGTATGTAAGGAAAGAATACGGATCTCTTGAATCAAGGAAAGGTCAATGTGTTTTACTTAACAAAGGGGTGTATGTGCCATTTTAGAACACCAAAGGAAGGTGAGTGCAATATCGCCTTGATATTAAGGCTTTGTCTGGGTGTTTGGAAAGGAAGGGGAAAGGGGAGTAGATCCCCATCTTGTGTGGAGGTTTTTCTTTTTTCATTGGACCAAAACCCTTCAATATGTAGGAAACGTGTTGAAGGAGGATTTTGAGGGTTTTGAATAAATCTATAAATCATTTTCATCTCTTTATAATACTCTCAAATCAAAGAAAATATTAGCAATATGCATGCTCTCATCCTCTCCAAAAGTACTCTTCAAAGTAAGGTGAAAGATGCTCCCCTCCTTTCCCTCCTAACACTCAAACAAAGCCTAGATGATTCAAATCTCAGCCAGTTTGCAGTTAAACTCGTAGTTATAATGTTAACTTTATTTGTTTGTTGCGAGAGCTATGTATATTTCCAATTTGCTTAAGCCTTTATTTCAAATTTTGAACTTACCTAGGATTCAAGGTCTAAGTGTAGGAGAATCAGGAGATATCCCAAATCTCCTTGATTTAATTTAGTTCTAATTTCAGATGTTATTTATTATTTCCTTCCTATCATTCCTTCATGCAAGAAAGAATTTTATTGTGATCCCTCAATTTAAATAGTTGTAAACGGCTAAATTAATTACAAAAAGCATTTTGCCACTTCCTTCCTATGTGTAGCCAACAATTAACTGCCAAAAGACTTAAGTAATGTATAACGTGACAGAAATTGTAAATTTTCTTTTTATTACGAAAATACAATCGCTAAAGAACCATTTACTTTCATCATTTAGCCTAGGAAACTGTTATGGCTTTACTTGTCTTAAGGAATATATCTAAACTTTTACTAATCTTGCTAATGTTCTGTCAATGCAATGTAACGTTTCTATCTCTGTTGAATACCTGACAAATCATAGAGATGATGGGTTCACCCAATGCAATGTTCCTTGCAGATTGTGATGCCAAGACTGGGTTGGAGATGGCTTCTTGCACTATCTTCCCTTCCCACATCTTTCCTTCTTCTGTTTTACAAAATGACACCAGAGTCACCAAGATACCTATGCTTGAAAGGTAGAACAACTGAAGCAACTAACGTTTTGGAGACAATAGCAAGACTAAATGGCAAAAAACTTCCTTCCGGTGTCCTTATTTCTGACAATCAAATTGAGCTACAAAAAATTGACAACCCTTCAGAAGACACGGTTTTACTCTCCCCAAGAAAAAGTGAAGTTGAATCTCCTAAAGGAATGATTTCTAATTTAGGTGGTATCTCATCACTTCGAGTGCTCCTTTCACCCAAATTATCAAGGTCAACCCTTCTATTATGGGCAGTGTTTTTCGGTAATGCTTTTTCATATTATGGCCTTGTTTTGCTGACCTCTGAGTTGAAAAGAAATAGTAAATGTATCCCAGATAAATTGCAGACAGAGAAGTCCCAGGATGTAAGTTACAAAGGTGTTTTTATTGCTAGTTTTGCAGGTATGTTTACTACTGATTTCAGAATTGTTTTACTATACCATTCCCGGGAAATGTATGATTGATGCCAAATTTTGTGCACAGAGCTACCTGGGCTCCTCTTGTCAGCCGTAGCAGTGGATAAACTTGGTCGTAAGCTATCAATGTCGATCATGTTCTTCATGTGTTGTATTTTCCTTCTCCCATTAACATTCTATCTGCCTGAAGACCTAACAACGGGCCTTTTATTTGGAGCTCGCATATGCATCACAGTAACCTTCACAATCGTGTATATTTATGCCCCAGAGGTAATGTCTTTATGCAATATATTTTAATTAATTTTGAATGATCTGGTTGAAGCAGAGTTTTTGAGAGAAATCTTGTGCATTCTTCGGTAGAAAGAAGCTAAACCTATTCCATACTGTTGTTGAATATTAAGATAAGTACTATTGTATAGCAATTGGTAAAAGTCCAATCCAATAAGACTACTAAAATATGAAGCTTCTGCATCAATAAGAAGAATGTTATTATCTTAAGGGGTTGCTAACACGTGTCTTAAGAGCATATAATGCAAAGTATCAATTAAAAAGTACAGCATTATTAACTTCAAATGGTGTATTTTTCGTGAAACATTTATGTGTTTTATTTCTTAACCAATTCTTTTACGGAATTTGTTAGCATTTGCATTATTTCCTTACAAAGTTAGTTCTCTGTGTTTGTTACATAGAAGTGCTCCTAGAAAAAATAAAGCAAATTATGGATGAACTAGTCCTCTTTAAGAATTGTCAAAACAAATGCAAACTATACCTGGCTTTAAATTACTCCCTACCTCATTGTTTTTGAATTAACTGTTAAAACTAATAAGTTACCACAAAGAAAAAAGGTCTCACCAGTTATTAGATAGGAACTATTCGTTTATATACTTTCGTCATGTATAAGACATGGTTTCACAGCAATGTTTTTCGGTCTAATTCTTCTTTATAAATGGTGGAAGTTAACATGTGCAAGATTTATATGAACTGCAGATATATCCCACATCAGTCAGAACCACCGGTGTCGGAGTCGCAAGCTCAGTGGGTAGAATTGGTGGAATGTTATGTCCATTGGTAGCAGTGGGTTTAGTACACGGATGTCATCAAACTGCAGCTGTCCTTCTGTTTGTAATTGTAGCTCTTGTTTCAGGAATATGTGTTATGTTCTTTCCGTTTGAGACCATGGGCCAAGAACTGCAAGATACTGTGTCAAGTATAAAGCAGACCGACGATGTGTAG
Protein sequence

>MS.gene50092.t1

MTGEEVEGSSSSSSYTVDEALITLGPAVQSAWNLSSHQESFITSVVFGGMLIGAYSWGIVSDQHGRRKGFLITATVTATAGFFSSLSPNYVSLLVFRSLVGLGLGGGPVLSSWFLEFVPAPNRGTWMVVFSGFWTVGTIFEASLAWIVMPRLGWRWLLALSSLPTSFLLLFYKMTPESPRYLCLKGRTTEATNVLETIARLNGKKLPSGVLISDNQIELQKIDNPSEDTVLLSPRKSEVESPKGMISNLGGISSLRVLLSPKLSRSTLLLWAVFFGNAFSYYGLVLLTSELKRNSKCIPDKLQTEKSQDVSYKGVFIASFAELPGLLLSAVAVDKLGRKLSMSIMFFMCCIFLLPLTFYLPEDLTTGLLFGARICITVTFTIVYIYAPEIYPTSVRTTGVGVASSVGRIGGMLCPLVAVGLVHGCHQTAAVLLFVIVALVSGICVMFFPFETMGQELQDTVSSIKQTDDV