Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50146.t1 | XP_003616443.2 | 97.2 | 493 | 14 | 0 | 1 | 493 | 1 | 493 | 1.50E-271 | 944.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50146.t1 | Q9CAY3 | 73.0 | 492 | 129 | 3 | 3 | 492 | 12 | 501 | 4.2e-206 | 718.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50146.t1 | G7KGS4 | 97.2 | 493 | 14 | 0 | 1 | 493 | 1 | 493 | 1.1e-271 | 944.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058015 | MS.gene50146 | 0.808837 | 2.54E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene50146 | MS.gene019646 | PPI |
| MS.gene50146 | MS.gene84826 | PPI |
| MS.gene50146 | MS.gene056794 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50146.t1 | MTR_5g080360 | 97.160 | 493 | 14 | 0 | 1 | 493 | 1 | 493 | 0.0 | 982 |
| MS.gene50146.t1 | MTR_1g040500 | 51.572 | 477 | 218 | 5 | 3 | 472 | 21 | 491 | 8.74e-167 | 483 |
| MS.gene50146.t1 | MTR_7g067380 | 51.055 | 474 | 223 | 3 | 2 | 472 | 24 | 491 | 1.00e-161 | 468 |
| MS.gene50146.t1 | MTR_4g415290 | 50.418 | 478 | 227 | 4 | 2 | 475 | 21 | 492 | 4.64e-158 | 458 |
| MS.gene50146.t1 | MTR_8g030620 | 47.059 | 476 | 242 | 5 | 2 | 472 | 27 | 497 | 8.76e-146 | 427 |
| MS.gene50146.t1 | MTR_5g091660 | 44.676 | 479 | 251 | 6 | 2 | 476 | 65 | 533 | 1.41e-139 | 412 |
| MS.gene50146.t1 | MTR_3g448430 | 43.478 | 483 | 240 | 12 | 3 | 472 | 49 | 511 | 2.16e-126 | 378 |
| MS.gene50146.t1 | MTR_5g061520 | 40.461 | 477 | 267 | 8 | 3 | 473 | 17 | 482 | 2.82e-118 | 356 |
| MS.gene50146.t1 | MTR_1g086650 | 41.372 | 481 | 255 | 12 | 3 | 472 | 65 | 529 | 3.61e-116 | 353 |
| MS.gene50146.t1 | MTR_3g048330 | 54.851 | 268 | 116 | 3 | 209 | 472 | 7 | 273 | 2.70e-95 | 290 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50146.t1 | AT3G11430 | 72.967 | 492 | 129 | 3 | 3 | 492 | 12 | 501 | 0.0 | 748 |
| MS.gene50146.t1 | AT5G06090 | 72.154 | 492 | 133 | 3 | 3 | 492 | 10 | 499 | 0.0 | 717 |
| MS.gene50146.t1 | AT2G38110 | 48.319 | 476 | 234 | 3 | 3 | 472 | 25 | 494 | 4.53e-147 | 430 |
| MS.gene50146.t1 | AT4G00400 | 46.541 | 477 | 245 | 6 | 2 | 473 | 22 | 493 | 1.20e-139 | 411 |
| MS.gene50146.t1 | AT1G01610 | 47.490 | 478 | 240 | 7 | 2 | 473 | 22 | 494 | 6.69e-138 | 407 |
| MS.gene50146.t1 | AT1G06520 | 43.320 | 494 | 244 | 9 | 2 | 472 | 104 | 584 | 3.00e-133 | 398 |
| MS.gene50146.t1 | AT3G11325 | 60.345 | 290 | 82 | 1 | 201 | 490 | 134 | 390 | 1.99e-117 | 351 |
| MS.gene50146.t1 | AT3G11325 | 56.190 | 105 | 46 | 0 | 12 | 116 | 9 | 113 | 1.28e-33 | 131 |
| MS.gene50146.t1 | AT3G11325 | 60.345 | 290 | 82 | 1 | 201 | 490 | 131 | 387 | 2.47e-117 | 350 |
| MS.gene50146.t1 | AT3G11325 | 56.190 | 105 | 46 | 0 | 12 | 116 | 6 | 110 | 1.19e-33 | 131 |
| MS.gene50146.t1 | AT1G02390 | 41.988 | 493 | 246 | 15 | 3 | 472 | 52 | 527 | 1.22e-111 | 341 |
| MS.gene50146.t1 | AT4G01950 | 41.322 | 484 | 258 | 14 | 3 | 472 | 46 | 517 | 2.83e-108 | 332 |
| MS.gene50146.t1 | AT4G01950 | 41.513 | 489 | 250 | 15 | 3 | 472 | 74 | 545 | 6.42e-108 | 332 |
Find 149 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCACATGTCAAGATTATT+TGG | 0.150256 | 5.4:-63053285 | MS.gene50146:CDS |
| CAATATCCTTTGAACATAAT+TGG | 0.202872 | 5.4:+63052744 | None:intergenic |
| GCTGGCTATCATTGTGCTTT+TGG | 0.221316 | 5.4:+63053463 | None:intergenic |
| AGATCATCCATGAAGAATTT+TGG | 0.231300 | 5.4:+63054849 | None:intergenic |
| TTACGTGCAGATGAAGTAAT+TGG | 0.248051 | 5.4:-63054729 | MS.gene50146:CDS |
| TTACTCGAAAAGATAAATAT+AGG | 0.294416 | 5.4:-63052690 | MS.gene50146:CDS |
| CAATTATGTTCAAAGGATAT+TGG | 0.310416 | 5.4:-63052743 | MS.gene50146:CDS |
| TCCCAAGGTTAATCTGATTA+TGG | 0.312514 | 5.4:+63053332 | None:intergenic |
| ATACTCTATTTCTCGGTTAT+CGG | 0.316529 | 5.4:-63053121 | MS.gene50146:CDS |
| ATAGAGCACTAAATCGTAAA+AGG | 0.319770 | 5.4:+63052968 | None:intergenic |
| TTATAGTACCTGGCAAAGTT+TGG | 0.321027 | 5.4:+63054545 | None:intergenic |
| TCGCGACATGTCGTTCCTTC+TGG | 0.322328 | 5.4:+63052997 | None:intergenic |
| AAAAGATAAATATAGGGTTT+TGG | 0.322909 | 5.4:-63052683 | MS.gene50146:CDS |
| CCGCCTGCGGAGGGAGGGAG+AGG | 0.341597 | 5.4:+63053234 | None:intergenic |
| CCTCCCTACTAATCATCCTT+TGG | 0.351925 | 5.4:-63053377 | MS.gene50146:CDS |
| TACTCGAAAAGATAAATATA+GGG | 0.353770 | 5.4:-63052689 | MS.gene50146:CDS |
| CCTCCCTCCGCAGGCGGCCC+CGG | 0.355972 | 5.4:-63053228 | MS.gene50146:CDS |
| AACAAATGCAACCACCATTT+AGG | 0.356648 | 5.4:-63053491 | MS.gene50146:CDS |
| TGCAAGGGGTTGGAAGGGTT+TGG | 0.357093 | 5.4:-63052875 | MS.gene50146:CDS |
| CATCGTGTCTTGTACTTCAT+TGG | 0.372552 | 5.4:-63052647 | MS.gene50146:CDS |
| ATGATTAGTAGGGAGGTTAA+TGG | 0.373547 | 5.4:+63053384 | None:intergenic |
| CCATACCCAACTTTGGAACT+TGG | 0.375224 | 5.4:+63054607 | None:intergenic |
| GTGTACTCACCGCACTCTAA+TGG | 0.376230 | 5.4:-63053193 | MS.gene50146:CDS |
| TAATCCTATGGCCCGTGATT+CGG | 0.383281 | 5.4:-63054980 | MS.gene50146:CDS |
| TACTTTCTTGAACCAGTTGC+CGG | 0.390520 | 5.4:-63052809 | MS.gene50146:CDS |
| AATAGGTTTGGTTTAGCTAC+AGG | 0.398808 | 5.4:-63054690 | MS.gene50146:CDS |
| GACGAACATGTGGCTTCAAC+CGG | 0.402068 | 5.4:+63052790 | None:intergenic |
| ATGTGAGGAATGGCCCAAAA+AGG | 0.402197 | 5.4:+63053300 | None:intergenic |
| GTTAGTCTCACGGTAGGAAT+GGG | 0.403818 | 5.4:+63053087 | None:intergenic |
| AATCTCCGATTTATGAATTC+CGG | 0.404562 | 5.4:+63054896 | None:intergenic |
| GTAACCTCATAAACTGGTCT+TGG | 0.404829 | 5.4:+63052829 | None:intergenic |
| CCGGATGAGGTCGGAGAAGC+TGG | 0.406448 | 5.4:+63053445 | None:intergenic |
| AATAACCAAGTTCCAAAGTT+GGG | 0.409025 | 5.4:-63054612 | MS.gene50146:CDS |
| TTCTTTCTCCAAACTTTGCC+AGG | 0.409775 | 5.4:-63054553 | MS.gene50146:intron |
| ACAAACAACTAAATCTCCTT+TGG | 0.410080 | 5.4:+63053020 | None:intergenic |
| AGGATATTGGCTGCAACTCT+AGG | 0.410254 | 5.4:-63052730 | MS.gene50146:CDS |
| AAGAAAGTAACCTCATAAAC+TGG | 0.410853 | 5.4:+63052823 | None:intergenic |
| TGAAGTAATTGGGAGTGAAT+TGG | 0.411804 | 5.4:-63054718 | MS.gene50146:CDS |
| CTTCATGTTAGTAGCGTTCG+AGG | 0.429967 | 5.4:-63055033 | MS.gene50146:CDS |
| AGCGTCCACATTTCGCATCC+TGG | 0.432122 | 5.4:+63053065 | None:intergenic |
| CGGGGCCGCCTGCGGAGGGA+GGG | 0.433345 | 5.4:+63053229 | None:intergenic |
| CCGGGGCCGCCTGCGGAGGG+AGG | 0.436986 | 5.4:+63053228 | None:intergenic |
| GAATCCAAAGGATGATTAGT+AGG | 0.437047 | 5.4:+63053373 | None:intergenic |
| GGGTTCATGAAGAAGAAAAC+CGG | 0.438572 | 5.4:+63052850 | None:intergenic |
| TATGGCTAGTAATATACCTA+TGG | 0.440019 | 5.4:+63053350 | None:intergenic |
| GGTTAGTCTCACGGTAGGAA+TGG | 0.440830 | 5.4:+63053086 | None:intergenic |
| AGCCTTGCCATACCCAACTT+TGG | 0.442432 | 5.4:+63054600 | None:intergenic |
| CAATAACCAAGTTCCAAAGT+TGG | 0.452601 | 5.4:-63054613 | MS.gene50146:CDS |
| TAACCTCATAAACTGGTCTT+GGG | 0.452875 | 5.4:+63052830 | None:intergenic |
| CGGTAACATACTCTATTTCT+CGG | 0.456428 | 5.4:-63053128 | MS.gene50146:CDS |
| CACATCGTGTGGACTCTTCC+CGG | 0.458052 | 5.4:+63052768 | None:intergenic |
| GAACCCAAGACCAGTTTATG+AGG | 0.459966 | 5.4:-63052833 | MS.gene50146:CDS |
| ATGTGGCTTCAACCGGCAAC+TGG | 0.460408 | 5.4:+63052797 | None:intergenic |
| ACACCGGGGCCGCCTGCGGA+GGG | 0.460445 | 5.4:+63053225 | None:intergenic |
| TTAGTAGCGTTCGAGGCCTC+AGG | 0.462333 | 5.4:-63055026 | MS.gene50146:CDS |
| CGGCCGTCGTGGAAGATAAC+CGG | 0.466207 | 5.4:+63053426 | None:intergenic |
| GAACCCTACTCTATAGTTCA+TGG | 0.467040 | 5.4:+63052912 | None:intergenic |
| GTTGAAGCCACATGTTCGTC+CGG | 0.467761 | 5.4:-63052787 | MS.gene50146:CDS |
| TCGTTCTGCTATTAATCCTA+TGG | 0.468159 | 5.4:-63054992 | MS.gene50146:CDS |
| ATTGGTTGATCAAGTAAAGA+AGG | 0.479552 | 5.4:-63052629 | MS.gene50146:CDS |
| GATTTAGTTGTTTGTCCAGA+AGG | 0.481237 | 5.4:-63053012 | MS.gene50146:CDS |
| GTGTAGGCCGCTTCACCAAT+CGG | 0.482482 | 5.4:+63053406 | None:intergenic |
| CGATTTATGAATTCCGGCTA+CGG | 0.482955 | 5.4:+63054902 | None:intergenic |
| ACTCTATAGTTCATGGCAAC+CGG | 0.483007 | 5.4:+63052919 | None:intergenic |
| CCAGCTTCTCCGACCTCATC+CGG | 0.484716 | 5.4:-63053445 | MS.gene50146:CDS |
| AACCCCTTGCAGTGGTTGCA+TGG | 0.489933 | 5.4:+63052887 | None:intergenic |
| TACGTGCAGATGAAGTAATT+GGG | 0.490722 | 5.4:-63054728 | MS.gene50146:CDS |
| CCACCTCTCCCTCCCTCCGC+AGG | 0.490767 | 5.4:-63053237 | MS.gene50146:CDS |
| CACTTATGAGAAAAGGGTTG+TGG | 0.495510 | 5.4:-63054799 | MS.gene50146:CDS |
| AACACCGGGGCCGCCTGCGG+AGG | 0.495682 | 5.4:+63053224 | None:intergenic |
| CCTCCATGCCGAGCATCTCT+AGG | 0.500161 | 5.4:+63054955 | None:intergenic |
| TCAGTTGTCTCTGAATTAGA+AGG | 0.500272 | 5.4:-63055089 | MS.gene50146:CDS |
| TTTAGCAACTCTTTCAGAAA+CGG | 0.500932 | 5.4:+63054641 | None:intergenic |
| CGTAGCCGGAATTCATAAAT+CGG | 0.506588 | 5.4:-63054901 | MS.gene50146:CDS |
| GGGTTGGAAGGGTTTGGACC+CGG | 0.513399 | 5.4:-63052869 | MS.gene50146:CDS |
| GGTGGCAAAGTTATTGTGAA+GGG | 0.518531 | 5.4:-63053264 | MS.gene50146:CDS |
| ATCTCTAGGAACCGAATCAC+GGG | 0.519411 | 5.4:+63054969 | None:intergenic |
| ATGATCTTTGTAGCCGTAGC+CGG | 0.521019 | 5.4:-63054915 | MS.gene50146:CDS |
| TATCTTCCACGACGGCCGAT+TGG | 0.522796 | 5.4:-63053421 | MS.gene50146:CDS |
| AACCACTGCAAGGGGTTGGA+AGG | 0.523750 | 5.4:-63052881 | MS.gene50146:CDS |
| CCAAGTTCCAAAGTTGGGTA+TGG | 0.524716 | 5.4:-63054607 | MS.gene50146:CDS |
| TATGGTGAAGAGGTTTGTTG+AGG | 0.528470 | 5.4:-63054757 | MS.gene50146:CDS |
| AGCCATAATCAGATTAACCT+TGG | 0.529275 | 5.4:-63053334 | MS.gene50146:CDS |
| GCCATAATCAGATTAACCTT+GGG | 0.530102 | 5.4:-63053333 | MS.gene50146:CDS |
| CTTCCATGCAACCACTGCAA+GGG | 0.532313 | 5.4:-63052890 | MS.gene50146:CDS |
| ATGCAACCACTGCAAGGGGT+TGG | 0.533517 | 5.4:-63052885 | MS.gene50146:CDS |
| GGATATTGGCTGCAACTCTA+GGG | 0.537098 | 5.4:-63052729 | MS.gene50146:CDS |
| CCTGCGGAGGGAGGGAGAGG+TGG | 0.537490 | 5.4:+63053237 | None:intergenic |
| AACCTCTTCACCATAACTCC+TGG | 0.538516 | 5.4:+63054765 | None:intergenic |
| GAACGCTACTAACATGAAGT+AGG | 0.542737 | 5.4:+63055037 | None:intergenic |
| GAAATAGAGTATGTTACCGC+TGG | 0.548665 | 5.4:+63053132 | None:intergenic |
| TGGTGGCAAAGTTATTGTGA+AGG | 0.548955 | 5.4:-63053265 | MS.gene50146:CDS |
| ACCACTGCAAGGGGTTGGAA+GGG | 0.554018 | 5.4:-63052880 | MS.gene50146:CDS |
| ACATAATTGGCCACATCGTG+TGG | 0.555416 | 5.4:+63052757 | None:intergenic |
| TCGCATCCTGGTTAGTCTCA+CGG | 0.556814 | 5.4:+63053077 | None:intergenic |
| ACGACGGCCGATTGGTGAAG+CGG | 0.557445 | 5.4:-63053413 | MS.gene50146:CDS |
| TTCCATGCAACCACTGCAAG+GGG | 0.559446 | 5.4:-63052889 | MS.gene50146:CDS |
| CACATGTCAAGATTATTTGG+TGG | 0.561180 | 5.4:-63053282 | MS.gene50146:CDS |
| GCACTAAATCGTAAAAGGAA+AGG | 0.562800 | 5.4:+63052973 | None:intergenic |
| TAATCTTGACATGTGAGGAA+TGG | 0.563106 | 5.4:+63053290 | None:intergenic |
| ATGTGGCCAATTATGTTCAA+AGG | 0.565821 | 5.4:-63052750 | MS.gene50146:CDS |
| ATCATCCTTTGGATTCCCAT+AGG | 0.567783 | 5.4:-63053366 | MS.gene50146:CDS |
| TGCCAGGAGTTATGGTGAAG+AGG | 0.568451 | 5.4:-63054767 | MS.gene50146:CDS |
| ACCCTTCCAACCCCTTGCAG+TGG | 0.568618 | 5.4:+63052879 | None:intergenic |
| AAAAGGTAAAATGGCTCCCA+AGG | 0.569333 | 5.4:+63053317 | None:intergenic |
| GGAAGATAACCGGATGAGGT+CGG | 0.569958 | 5.4:+63053436 | None:intergenic |
| ATGATCTTGACATGGAAGCT+TGG | 0.575350 | 5.4:-63054833 | MS.gene50146:CDS |
| TTGAAGCCACATGTTCGTCC+GGG | 0.575686 | 5.4:-63052786 | MS.gene50146:CDS |
| TTCCAAAGTTGGGTATGGCA+AGG | 0.576401 | 5.4:-63054602 | MS.gene50146:CDS |
| ATGGCTAGTAATATACCTAT+GGG | 0.576541 | 5.4:+63053351 | None:intergenic |
| TTGCCATGAACTATAGAGTA+GGG | 0.580288 | 5.4:-63052915 | MS.gene50146:CDS |
| CTTCATGGATGATCTTGACA+TGG | 0.581073 | 5.4:-63054841 | MS.gene50146:CDS |
| TCTTCCATGCAACCACTGCA+AGG | 0.581170 | 5.4:-63052891 | MS.gene50146:CDS |
| AGTAGGGAGGTTAATGGTGT+AGG | 0.581490 | 5.4:+63053390 | None:intergenic |
| AAGAACACCGGGGCCGCCTG+CGG | 0.582203 | 5.4:+63053221 | None:intergenic |
| CATCTCTAGGAACCGAATCA+CGG | 0.582902 | 5.4:+63054968 | None:intergenic |
| TACGTTGGAGGACGGAAGAG+AGG | 0.586719 | 5.4:+63053160 | None:intergenic |
| AGGACGGAAGAGAGGACCAC+AGG | 0.587085 | 5.4:+63053168 | None:intergenic |
| GGAACCGAATCACGGGCCAT+AGG | 0.587795 | 5.4:+63054976 | None:intergenic |
| ATAAAATATGAGTTATCCAA+AGG | 0.588127 | 5.4:-63053036 | MS.gene50146:CDS |
| GTTCCTAGAGATGCTCGGCA+TGG | 0.589970 | 5.4:-63054958 | MS.gene50146:CDS |
| TCGTGGAAGATAACCGGATG+AGG | 0.592639 | 5.4:+63053432 | None:intergenic |
| AATCCAAAGGATGATTAGTA+GGG | 0.594053 | 5.4:+63053374 | None:intergenic |
| ACTAACCAGGATGCGAAATG+TGG | 0.596166 | 5.4:-63053070 | MS.gene50146:CDS |
| ACTCTTCCCGGACGAACATG+TGG | 0.597450 | 5.4:+63052780 | None:intergenic |
| GCTTCACCAATCGGCCGTCG+TGG | 0.597938 | 5.4:+63053415 | None:intergenic |
| TTAGTCTCACGGTAGGAATG+GGG | 0.605101 | 5.4:+63053088 | None:intergenic |
| CCTCTCCCTCCCTCCGCAGG+CGG | 0.606101 | 5.4:-63053234 | MS.gene50146:CDS |
| CCAAATAATCTTGACATGTG+AGG | 0.613846 | 5.4:+63053285 | None:intergenic |
| CCAAAGGATGATTAGTAGGG+AGG | 0.617133 | 5.4:+63053377 | None:intergenic |
| TAGTCTCACGGTAGGAATGG+GGG | 0.621006 | 5.4:+63053089 | None:intergenic |
| GATCATTATTATGGTAAACA+AGG | 0.622764 | 5.4:+63052589 | None:intergenic |
| ACTCACAGATCGGATAGTAC+CGG | 0.630574 | 5.4:-63052938 | MS.gene50146:CDS |
| GGACGGAAGAGAGGACCACA+GGG | 0.633576 | 5.4:+63053169 | None:intergenic |
| TTCCTACCGTGAGACTAACC+AGG | 0.633579 | 5.4:-63053083 | MS.gene50146:CDS |
| ATTCGGTTCCTAGAGATGCT+CGG | 0.633640 | 5.4:-63054963 | MS.gene50146:CDS |
| GTTGCCATGAACTATAGAGT+AGG | 0.638820 | 5.4:-63052916 | MS.gene50146:CDS |
| CGGGAAGAGTCCACACGATG+TGG | 0.640851 | 5.4:-63052767 | MS.gene50146:CDS |
| GGTTCATGAAGAAGAAAACC+GGG | 0.655673 | 5.4:+63052851 | None:intergenic |
| TATTTGCAGAACTCACAGAT+CGG | 0.656460 | 5.4:-63052948 | MS.gene50146:CDS |
| CATCCGGTTATCTTCCACGA+CGG | 0.663414 | 5.4:-63053429 | MS.gene50146:CDS |
| ATATACCTATGGGAATCCAA+AGG | 0.666680 | 5.4:+63053361 | None:intergenic |
| CCTAGAGATGCTCGGCATGG+AGG | 0.670608 | 5.4:-63054955 | MS.gene50146:CDS |
| GGTTGATCAAGTAAAGAAGG+TGG | 0.673976 | 5.4:-63052626 | MS.gene50146:CDS |
| ATCCTGGTTAGTCTCACGGT+AGG | 0.682353 | 5.4:+63053081 | None:intergenic |
| AACGAAGCGAATCAAACCTG+AGG | 0.685586 | 5.4:+63055010 | None:intergenic |
| CCACAGGGTCCATTAGAGTG+CGG | 0.712721 | 5.4:+63053184 | None:intergenic |
| CCTCCAACGTAAAACTCCAG+CGG | 0.722705 | 5.4:-63053148 | MS.gene50146:CDS |
| CCGCACTCTAATGGACCCTG+TGG | 0.755400 | 5.4:-63053184 | MS.gene50146:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGTTTTTTTTTTTATTAG+TGG | - | chr5.4:63053693-63053712 | MS.gene50146:intron | 10.0% |
| !! | AATAGATTAAAAAGAATACA+CGG | + | chr5.4:63053788-63053807 | None:intergenic | 15.0% |
| !! | GAAACATATTTAAAAAAAGA+CGG | + | chr5.4:63053323-63053342 | None:intergenic | 15.0% |
| !!! | TATTTCAACGAATAATTTTT+TGG | - | chr5.4:63053236-63053255 | MS.gene50146:CDS | 15.0% |
| !! | ATAAAATATGAGTTATCCAA+AGG | - | chr5.4:63054656-63054675 | MS.gene50146:CDS | 20.0% |
| !! | ATAGATTAAAAAGAATACAC+GGG | + | chr5.4:63053787-63053806 | None:intergenic | 20.0% |
| !! | ATGAATGAAAAAATTCGATT+TGG | - | chr5.4:63053197-63053216 | MS.gene50146:CDS | 20.0% |
| !! | CTTATAAGAAACAACAAAAT+TGG | + | chr5.4:63053959-63053978 | None:intergenic | 20.0% |
| !! | GTTAAATAAATTATAGTACC+TGG | + | chr5.4:63053160-63053179 | None:intergenic | 20.0% |
| !! | TAAATAGACTCGAAAATTAT+GGG | + | chr5.4:63053883-63053902 | None:intergenic | 20.0% |
| !! | TACTCGAAAAGATAAATATA+GGG | - | chr5.4:63055003-63055022 | MS.gene50146:CDS | 20.0% |
| !! | TTACTCGAAAAGATAAATAT+AGG | - | chr5.4:63055002-63055021 | MS.gene50146:CDS | 20.0% |
| !!! | AAAAGATAAATATAGGGTTT+TGG | - | chr5.4:63055009-63055028 | MS.gene50146:CDS | 20.0% |
| !!! | AATTGTATACGAACAAATTT+TGG | + | chr5.4:63053413-63053432 | None:intergenic | 20.0% |
| !!! | AGAAACAAAATTTTATTCCA+AGG | - | chr5.4:63053581-63053600 | MS.gene50146:intron | 20.0% |
| !!! | ATTGTATACGAACAAATTTT+GGG | + | chr5.4:63053412-63053431 | None:intergenic | 20.0% |
| !!! | TTTTTCTCAAAATTGTCATT+TGG | - | chr5.4:63053288-63053307 | MS.gene50146:CDS | 20.0% |
| ! | ACAACTATAAGCCATATTAT+AGG | + | chr5.4:63053542-63053561 | None:intergenic | 25.0% |
| ! | CAATATCCTTTGAACATAAT+TGG | + | chr5.4:63054951-63054970 | None:intergenic | 25.0% |
| ! | CAATTATGTTCAAAGGATAT+TGG | - | chr5.4:63054949-63054968 | MS.gene50146:CDS | 25.0% |
| ! | GTAAATAGACTCGAAAATTA+TGG | + | chr5.4:63053884-63053903 | None:intergenic | 25.0% |
| ! | TAAGTGTAAGTATTCCAAAA+GGG | - | chr5.4:63053509-63053528 | MS.gene50146:intron | 25.0% |
| ! | TAATATGGCTTATAGTTGTT+TGG | - | chr5.4:63053543-63053562 | MS.gene50146:intron | 25.0% |
| ! | TTAAGTGTAAGTATTCCAAA+AGG | - | chr5.4:63053508-63053527 | MS.gene50146:intron | 25.0% |
| !! | AGTTTTACCAAAATTCTTCA+TGG | - | chr5.4:63052836-63052855 | MS.gene50146:CDS | 25.0% |
| !! | TTTTAGCACTTATGAGAAAA+GGG | - | chr5.4:63052887-63052906 | MS.gene50146:CDS | 25.0% |
| !!! | ACAAGATTTTGATACTAAAC+AGG | + | chr5.4:63053906-63053925 | None:intergenic | 25.0% |
| !!! | TATGGGTTAAATACGTTTTT+TGG | + | chr5.4:63053866-63053885 | None:intergenic | 25.0% |
| !!! | TTTGCCTTTACTTTTATGTT+CGG | - | chr5.4:63053433-63053452 | MS.gene50146:CDS | 25.0% |
| !!! | TTTTTAGCACTTATGAGAAA+AGG | - | chr5.4:63052886-63052905 | MS.gene50146:CDS | 25.0% |
| AAGAAAGTAACCTCATAAAC+TGG | + | chr5.4:63054872-63054891 | None:intergenic | 30.0% | |
| AATAACCAAGTTCCAAAGTT+GGG | - | chr5.4:63053080-63053099 | MS.gene50146:CDS | 30.0% | |
| AATCCAAAGGATGATTAGTA+GGG | + | chr5.4:63054321-63054340 | None:intergenic | 30.0% | |
| AATCTCCGATTTATGAATTC+CGG | + | chr5.4:63052799-63052818 | None:intergenic | 30.0% | |
| ACAAACAACTAAATCTCCTT+TGG | + | chr5.4:63054675-63054694 | None:intergenic | 30.0% | |
| ATGACCGAACATAAAAGTAA+AGG | + | chr5.4:63053440-63053459 | None:intergenic | 30.0% | |
| ATGGCTAGTAATATACCTAT+GGG | + | chr5.4:63054344-63054363 | None:intergenic | 30.0% | |
| ATTGGTTGATCAAGTAAAGA+AGG | - | chr5.4:63055063-63055082 | MS.gene50146:CDS | 30.0% | |
| TATGGCTAGTAATATACCTA+TGG | + | chr5.4:63054345-63054364 | None:intergenic | 30.0% | |
| TTCATTGCAATTTCTCACTT+TGG | + | chr5.4:63053182-63053201 | None:intergenic | 30.0% | |
| TTTAGCAACTCTTTCAGAAA+CGG | + | chr5.4:63053054-63053073 | None:intergenic | 30.0% | |
| ! | AGATCATCCATGAAGAATTT+TGG | + | chr5.4:63052846-63052865 | None:intergenic | 30.0% |
| ! | ATACTCTATTTCTCGGTTAT+CGG | - | chr5.4:63054571-63054590 | MS.gene50146:CDS | 30.0% |
| ! | ATAGAGCACTAAATCGTAAA+AGG | + | chr5.4:63054727-63054746 | None:intergenic | 30.0% |
| !!! | ATAAATATAGGGTTTTGGCT+GGG | - | chr5.4:63055014-63055033 | MS.gene50146:CDS | 30.0% |
| !!! | GAATTGGTTTTCAATAGGTT+TGG | - | chr5.4:63052990-63053009 | MS.gene50146:CDS | 30.0% |
| AACAAAAATGCCAGGAGTTA+TGG | - | chr5.4:63052917-63052936 | MS.gene50146:CDS | 35.0% | |
| AACAAATGCAACCACCATTT+AGG | - | chr5.4:63054201-63054220 | MS.gene50146:intron | 35.0% | |
| AATGGCCCAAAAAGGTAAAA+TGG | + | chr5.4:63054387-63054406 | None:intergenic | 35.0% | |
| AGCCATAATCAGATTAACCT+TGG | - | chr5.4:63054358-63054377 | MS.gene50146:intron | 35.0% | |
| AGGGTGAACTTCCTATAATA+TGG | - | chr5.4:63053528-63053547 | MS.gene50146:intron | 35.0% | |
| AGTACACACAAAAAGAACAC+CGG | + | chr5.4:63054486-63054505 | None:intergenic | 35.0% | |
| ATATACCTATGGGAATCCAA+AGG | + | chr5.4:63054334-63054353 | None:intergenic | 35.0% | |
| ATGATTAGTAGGGAGGTTAA+TGG | + | chr5.4:63054311-63054330 | None:intergenic | 35.0% | |
| ATGTGGCCAATTATGTTCAA+AGG | - | chr5.4:63054942-63054961 | MS.gene50146:CDS | 35.0% | |
| CAATAACCAAGTTCCAAAGT+TGG | - | chr5.4:63053079-63053098 | MS.gene50146:CDS | 35.0% | |
| CACATGTCAAGATTATTTGG+TGG | - | chr5.4:63054410-63054429 | MS.gene50146:intron | 35.0% | |
| CCAAATAATCTTGACATGTG+AGG | + | chr5.4:63054410-63054429 | None:intergenic | 35.0% | |
| CCTCACATGTCAAGATTATT+TGG | - | chr5.4:63054407-63054426 | MS.gene50146:intron | 35.0% | |
| CTCAGATAAAGACTCTTTCA+CGG | - | chr5.4:63053633-63053652 | MS.gene50146:intron | 35.0% | |
| GAATCCAAAGGATGATTAGT+AGG | + | chr5.4:63054322-63054341 | None:intergenic | 35.0% | |
| GATTTAGTTGTTTGTCCAGA+AGG | - | chr5.4:63054680-63054699 | MS.gene50146:CDS | 35.0% | |
| GCACTAAATCGTAAAAGGAA+AGG | + | chr5.4:63054722-63054741 | None:intergenic | 35.0% | |
| GCCATAATCAGATTAACCTT+GGG | - | chr5.4:63054359-63054378 | MS.gene50146:intron | 35.0% | |
| TAATCTTGACATGTGAGGAA+TGG | + | chr5.4:63054405-63054424 | None:intergenic | 35.0% | |
| TACGTGCAGATGAAGTAATT+GGG | - | chr5.4:63052964-63052983 | MS.gene50146:CDS | 35.0% | |
| TATTTGCAGAACTCACAGAT+CGG | - | chr5.4:63054744-63054763 | MS.gene50146:CDS | 35.0% | |
| TCAGATAAAGACTCTTTCAC+GGG | - | chr5.4:63053634-63053653 | MS.gene50146:intron | 35.0% | |
| TCAGTTGTCTCTGAATTAGA+AGG | - | chr5.4:63052603-63052622 | MS.gene50146:CDS | 35.0% | |
| TCCCAAGGTTAATCTGATTA+TGG | + | chr5.4:63054363-63054382 | None:intergenic | 35.0% | |
| TCGTTCTGCTATTAATCCTA+TGG | - | chr5.4:63052700-63052719 | MS.gene50146:CDS | 35.0% | |
| TGAAGTAATTGGGAGTGAAT+TGG | - | chr5.4:63052974-63052993 | MS.gene50146:CDS | 35.0% | |
| TTACGTGCAGATGAAGTAAT+TGG | - | chr5.4:63052963-63052982 | MS.gene50146:CDS | 35.0% | |
| TTATAGTACCTGGCAAAGTT+TGG | + | chr5.4:63053150-63053169 | None:intergenic | 35.0% | |
| TTGCCATGAACTATAGAGTA+GGG | - | chr5.4:63054777-63054796 | MS.gene50146:CDS | 35.0% | |
| TTGGTTCATAAATACGATGG+GGG | - | chr5.4:63053658-63053677 | MS.gene50146:intron | 35.0% | |
| ! | AATAGGTTTGGTTTAGCTAC+AGG | - | chr5.4:63053002-63053021 | MS.gene50146:CDS | 35.0% |
| ! | CGGTAACATACTCTATTTCT+CGG | - | chr5.4:63054564-63054583 | MS.gene50146:CDS | 35.0% |
| ! | GACATATTTTGTATGTGTGC+AGG | - | chr5.4:63054178-63054197 | MS.gene50146:intron | 35.0% |
| ! | GGTTGGTTCATAAATACGAT+GGG | - | chr5.4:63053656-63053675 | MS.gene50146:intron | 35.0% |
| ! | GTTGGTTCATAAATACGATG+GGG | - | chr5.4:63053657-63053676 | MS.gene50146:intron | 35.0% |
| ! | TTATAGGAAGTTCACCCTTT+TGG | + | chr5.4:63053526-63053545 | None:intergenic | 35.0% |
| !! | GAATTTTGGTAAAACTGCTC+TGG | + | chr5.4:63052832-63052851 | None:intergenic | 35.0% |
| !! | GATAAATATAGGGTTTTGGC+TGG | - | chr5.4:63055013-63055032 | MS.gene50146:CDS | 35.0% |
| !! | TAACCTCATAAACTGGTCTT+GGG | + | chr5.4:63054865-63054884 | None:intergenic | 35.0% |
| !! | TTATAGTTGTTTGGTGCTTG+TGG | - | chr5.4:63053552-63053571 | MS.gene50146:intron | 35.0% |
| !!! | GGAGTGAATTGGTTTTCAAT+AGG | - | chr5.4:63052985-63053004 | MS.gene50146:CDS | 35.0% |
| AAAAGGTAAAATGGCTCCCA+AGG | + | chr5.4:63054378-63054397 | None:intergenic | 40.0% | |
| ACTCTATAGTTCATGGCAAC+CGG | + | chr5.4:63054776-63054795 | None:intergenic | 40.0% | |
| ATCATCCTTTGGATTCCCAT+AGG | - | chr5.4:63054326-63054345 | MS.gene50146:intron | 40.0% | |
| ATGATCTTGACATGGAAGCT+TGG | - | chr5.4:63052859-63052878 | MS.gene50146:CDS | 40.0% | |
| CACTTATGAGAAAAGGGTTG+TGG | - | chr5.4:63052893-63052912 | MS.gene50146:CDS | 40.0% | |
| CAGATAAAGACTCTTTCACG+GGG | - | chr5.4:63053635-63053654 | MS.gene50146:intron | 40.0% | |
| CATCGTGTCTTGTACTTCAT+TGG | - | chr5.4:63055045-63055064 | MS.gene50146:CDS | 40.0% | |
| CGATTTATGAATTCCGGCTA+CGG | + | chr5.4:63052793-63052812 | None:intergenic | 40.0% | |
| CGTAGCCGGAATTCATAAAT+CGG | - | chr5.4:63052791-63052810 | MS.gene50146:CDS | 40.0% | |
| CTTCATGGATGATCTTGACA+TGG | - | chr5.4:63052851-63052870 | MS.gene50146:CDS | 40.0% | |
| GAAATAGAGTATGTTACCGC+TGG | + | chr5.4:63054563-63054582 | None:intergenic | 40.0% | |
| GAACCCTACTCTATAGTTCA+TGG | + | chr5.4:63054783-63054802 | None:intergenic | 40.0% | |
| GAACGCTACTAACATGAAGT+AGG | + | chr5.4:63052658-63052677 | None:intergenic | 40.0% | |
| GGGTTCATGAAGAAGAAAAC+CGG | + | chr5.4:63054845-63054864 | None:intergenic | 40.0% | |
| GGTGGCAAAGTTATTGTGAA+GGG | - | chr5.4:63054428-63054447 | MS.gene50146:intron | 40.0% | |
| GGTTCATGAAGAAGAAAACC+GGG | + | chr5.4:63054844-63054863 | None:intergenic | 40.0% | |
| GGTTGATCAAGTAAAGAAGG+TGG | - | chr5.4:63055066-63055085 | MS.gene50146:CDS | 40.0% | |
| GTACACACAAAAAGAACACC+GGG | + | chr5.4:63054485-63054504 | None:intergenic | 40.0% | |
| GTTGCCATGAACTATAGAGT+AGG | - | chr5.4:63054776-63054795 | MS.gene50146:CDS | 40.0% | |
| GTTGTGGTAACAAAAATGCC+AGG | - | chr5.4:63052909-63052928 | MS.gene50146:CDS | 40.0% | |
| TACACACAAAAAGAACACCG+GGG | + | chr5.4:63054484-63054503 | None:intergenic | 40.0% | |
| TACTTTCTTGAACCAGTTGC+CGG | - | chr5.4:63054883-63054902 | MS.gene50146:CDS | 40.0% | |
| TGATGTTTGCATGTTCACCT+TGG | + | chr5.4:63053601-63053620 | None:intergenic | 40.0% | |
| TGGTGGCAAAGTTATTGTGA+AGG | - | chr5.4:63054427-63054446 | MS.gene50146:intron | 40.0% | |
| TTCTTTCTCCAAACTTTGCC+AGG | - | chr5.4:63053139-63053158 | MS.gene50146:CDS | 40.0% | |
| ! | GTAACCTCATAAACTGGTCT+TGG | + | chr5.4:63054866-63054885 | None:intergenic | 40.0% |
| !! | GGGAGCCATTTTACCTTTTT+GGG | - | chr5.4:63054379-63054398 | MS.gene50146:intron | 40.0% |
| !! | GGGTTGGTTCATAAATACGA+TGG | - | chr5.4:63053655-63053674 | MS.gene50146:intron | 40.0% |
| !! | TATGGTGAAGAGGTTTGTTG+AGG | - | chr5.4:63052935-63052954 | MS.gene50146:CDS | 40.0% |
| !! | TGGGAGCCATTTTACCTTTT+TGG | - | chr5.4:63054378-63054397 | MS.gene50146:intron | 40.0% |
| !!! | TGCTTTTGGCTTGTCCTAAA+TGG | + | chr5.4:63054218-63054237 | None:intergenic | 40.0% |
| !!! | TTTTGGCTTGTCCTAAATGG+TGG | + | chr5.4:63054215-63054234 | None:intergenic | 40.0% |
| AAATACGATGGGGGAGAACT+TGG | - | chr5.4:63053667-63053686 | MS.gene50146:intron | 45.0% | |
| AACCTCTTCACCATAACTCC+TGG | + | chr5.4:63052930-63052949 | None:intergenic | 45.0% | |
| AACGAAGCGAATCAAACCTG+AGG | + | chr5.4:63052685-63052704 | None:intergenic | 45.0% | |
| AATACGATGGGGGAGAACTT+GGG | - | chr5.4:63053668-63053687 | MS.gene50146:intron | 45.0% | |
| ACATAATTGGCCACATCGTG+TGG | + | chr5.4:63054938-63054957 | None:intergenic | 45.0% | |
| ACTAACCAGGATGCGAAATG+TGG | - | chr5.4:63054622-63054641 | MS.gene50146:CDS | 45.0% | |
| ACTCACAGATCGGATAGTAC+CGG | - | chr5.4:63054754-63054773 | MS.gene50146:CDS | 45.0% | |
| AGTAGGGAGGTTAATGGTGT+AGG | + | chr5.4:63054305-63054324 | None:intergenic | 45.0% | |
| ATGATCTTTGTAGCCGTAGC+CGG | - | chr5.4:63052777-63052796 | MS.gene50146:CDS | 45.0% | |
| ATGTGAGGAATGGCCCAAAA+AGG | + | chr5.4:63054395-63054414 | None:intergenic | 45.0% | |
| ATTCGGTTCCTAGAGATGCT+CGG | - | chr5.4:63052729-63052748 | MS.gene50146:CDS | 45.0% | |
| CCAAAGGATGATTAGTAGGG+AGG | + | chr5.4:63054318-63054337 | None:intergenic | 45.0% | |
| CCAAGTTCCAAAGTTGGGTA+TGG | - | chr5.4:63053085-63053104 | MS.gene50146:CDS | 45.0% | |
| CCTCCCTACTAATCATCCTT+TGG | - | chr5.4:63054315-63054334 | MS.gene50146:intron | 45.0% | |
| CTTCATGTTAGTAGCGTTCG+AGG | - | chr5.4:63052659-63052678 | MS.gene50146:CDS | 45.0% | |
| GAACCCAAGACCAGTTTATG+AGG | - | chr5.4:63054859-63054878 | MS.gene50146:CDS | 45.0% | |
| TAAAGACTCTTTCACGGGGT+TGG | - | chr5.4:63053639-63053658 | MS.gene50146:intron | 45.0% | |
| TAATCCTATGGCCCGTGATT+CGG | - | chr5.4:63052712-63052731 | MS.gene50146:CDS | 45.0% | |
| TTAGTCTCACGGTAGGAATG+GGG | + | chr5.4:63054607-63054626 | None:intergenic | 45.0% | |
| TTCCAAAGTTGGGTATGGCA+AGG | - | chr5.4:63053090-63053109 | MS.gene50146:CDS | 45.0% | |
| ! | AGGATATTGGCTGCAACTCT+AGG | - | chr5.4:63054962-63054981 | MS.gene50146:CDS | 45.0% |
| ! | ATCTCTAGGAACCGAATCAC+GGG | + | chr5.4:63052726-63052745 | None:intergenic | 45.0% |
| ! | CATCTCTAGGAACCGAATCA+CGG | + | chr5.4:63052727-63052746 | None:intergenic | 45.0% |
| ! | GCTGGCTATCATTGTGCTTT+TGG | + | chr5.4:63054232-63054251 | None:intergenic | 45.0% |
| ! | GGATATTGGCTGCAACTCTA+GGG | - | chr5.4:63054963-63054982 | MS.gene50146:CDS | 45.0% |
| ! | GTTAGTCTCACGGTAGGAAT+GGG | + | chr5.4:63054608-63054627 | None:intergenic | 45.0% |
| ! | TGGAGTTTTACGTTGGAGGA+CGG | + | chr5.4:63054543-63054562 | None:intergenic | 45.0% |
| ! | TTACCGCTGGAGTTTTACGT+TGG | + | chr5.4:63054550-63054569 | None:intergenic | 45.0% |
| !! | CCATACCCAACTTTGGAACT+TGG | + | chr5.4:63053088-63053107 | None:intergenic | 45.0% |
| !! | AATTAATTTACTTTAAATAT+TGG | - | chr5.4:63054133-63054152 | MS.gene50146:intron | 5.0% |
| !! | ATTAATTTACTTTAAATATT+GGG | - | chr5.4:63054134-63054153 | MS.gene50146:intron | 5.0% |
| AGCCTTGCCATACCCAACTT+TGG | + | chr5.4:63053095-63053114 | None:intergenic | 50.0% | |
| CATCCGGTTATCTTCCACGA+CGG | - | chr5.4:63054263-63054282 | MS.gene50146:intron | 50.0% | |
| CCTCCAACGTAAAACTCCAG+CGG | - | chr5.4:63054544-63054563 | MS.gene50146:intron | 50.0% | |
| CTTCCATGCAACCACTGCAA+GGG | - | chr5.4:63054802-63054821 | MS.gene50146:CDS | 50.0% | |
| GACGAACATGTGGCTTCAAC+CGG | + | chr5.4:63054905-63054924 | None:intergenic | 50.0% | |
| GGAAGATAACCGGATGAGGT+CGG | + | chr5.4:63054259-63054278 | None:intergenic | 50.0% | |
| GTGTACTCACCGCACTCTAA+TGG | - | chr5.4:63054499-63054518 | MS.gene50146:intron | 50.0% | |
| GTTGAAGCCACATGTTCGTC+CGG | - | chr5.4:63054905-63054924 | MS.gene50146:CDS | 50.0% | |
| TAGTCTCACGGTAGGAATGG+GGG | + | chr5.4:63054606-63054625 | None:intergenic | 50.0% | |
| TCGTGGAAGATAACCGGATG+AGG | + | chr5.4:63054263-63054282 | None:intergenic | 50.0% | |
| TCTTCCATGCAACCACTGCA+AGG | - | chr5.4:63054801-63054820 | MS.gene50146:CDS | 50.0% | |
| TGCCAGGAGTTATGGTGAAG+AGG | - | chr5.4:63052925-63052944 | MS.gene50146:CDS | 50.0% | |
| TTCCATGCAACCACTGCAAG+GGG | - | chr5.4:63054803-63054822 | MS.gene50146:CDS | 50.0% | |
| TTCCTACCGTGAGACTAACC+AGG | - | chr5.4:63054609-63054628 | MS.gene50146:CDS | 50.0% | |
| TTGAAGCCACATGTTCGTCC+GGG | - | chr5.4:63054906-63054925 | MS.gene50146:CDS | 50.0% | |
| !! | ATCCTGGTTAGTCTCACGGT+AGG | + | chr5.4:63054614-63054633 | None:intergenic | 50.0% |
| !! | GGTTAGTCTCACGGTAGGAA+TGG | + | chr5.4:63054609-63054628 | None:intergenic | 50.0% |
| !! | TCGCATCCTGGTTAGTCTCA+CGG | + | chr5.4:63054618-63054637 | None:intergenic | 50.0% |
| !!! | AGGGTTTTGGCTGGGAATGA+TGG | - | chr5.4:63055022-63055041 | MS.gene50146:CDS | 50.0% |
| AACCACTGCAAGGGGTTGGA+AGG | - | chr5.4:63054811-63054830 | MS.gene50146:CDS | 55.0% | |
| AACCCCTTGCAGTGGTTGCA+TGG | + | chr5.4:63054808-63054827 | None:intergenic | 55.0% | |
| ACCACTGCAAGGGGTTGGAA+GGG | - | chr5.4:63054812-63054831 | MS.gene50146:CDS | 55.0% | |
| ACTCTTCCCGGACGAACATG+TGG | + | chr5.4:63054915-63054934 | None:intergenic | 55.0% | |
| AGCGTCCACATTTCGCATCC+TGG | + | chr5.4:63054630-63054649 | None:intergenic | 55.0% | |
| ATGCAACCACTGCAAGGGGT+TGG | - | chr5.4:63054807-63054826 | MS.gene50146:CDS | 55.0% | |
| ATGTGGCTTCAACCGGCAAC+TGG | + | chr5.4:63054898-63054917 | None:intergenic | 55.0% | |
| CACATCGTGTGGACTCTTCC+CGG | + | chr5.4:63054927-63054946 | None:intergenic | 55.0% | |
| CCACAGGGTCCATTAGAGTG+CGG | + | chr5.4:63054511-63054530 | None:intergenic | 55.0% | |
| GTGTAGGCCGCTTCACCAAT+CGG | + | chr5.4:63054289-63054308 | None:intergenic | 55.0% | |
| GTTCCTAGAGATGCTCGGCA+TGG | - | chr5.4:63052734-63052753 | MS.gene50146:CDS | 55.0% | |
| TACGTTGGAGGACGGAAGAG+AGG | + | chr5.4:63054535-63054554 | None:intergenic | 55.0% | |
| TATCTTCCACGACGGCCGAT+TGG | - | chr5.4:63054271-63054290 | MS.gene50146:intron | 55.0% | |
| TCGCGACATGTCGTTCCTTC+TGG | + | chr5.4:63054698-63054717 | None:intergenic | 55.0% | |
| TGCAAGGGGTTGGAAGGGTT+TGG | - | chr5.4:63054817-63054836 | MS.gene50146:CDS | 55.0% | |
| TTAGTAGCGTTCGAGGCCTC+AGG | - | chr5.4:63052666-63052685 | MS.gene50146:CDS | 55.0% | |
| ! | CCGCTGGAGTTTTACGTTGG+AGG | + | chr5.4:63054547-63054566 | None:intergenic | 55.0% |
| ACCCTTCCAACCCCTTGCAG+TGG | + | chr5.4:63054816-63054835 | None:intergenic | 60.0% | |
| ACGACGGCCGATTGGTGAAG+CGG | - | chr5.4:63054279-63054298 | MS.gene50146:intron | 60.0% | |
| AGGACGGAAGAGAGGACCAC+AGG | + | chr5.4:63054527-63054546 | None:intergenic | 60.0% | |
| CCAGCTTCTCCGACCTCATC+CGG | - | chr5.4:63054247-63054266 | MS.gene50146:intron | 60.0% | |
| CCTAGAGATGCTCGGCATGG+AGG | - | chr5.4:63052737-63052756 | MS.gene50146:CDS | 60.0% | |
| CCTCCATGCCGAGCATCTCT+AGG | + | chr5.4:63052740-63052759 | None:intergenic | 60.0% | |
| CGGCCGTCGTGGAAGATAAC+CGG | + | chr5.4:63054269-63054288 | None:intergenic | 60.0% | |
| CGGGAAGAGTCCACACGATG+TGG | - | chr5.4:63054925-63054944 | MS.gene50146:CDS | 60.0% | |
| GGAACCGAATCACGGGCCAT+AGG | + | chr5.4:63052719-63052738 | None:intergenic | 60.0% | |
| GGACGGAAGAGAGGACCACA+GGG | + | chr5.4:63054526-63054545 | None:intergenic | 60.0% | |
| GGGTTGGAAGGGTTTGGACC+CGG | - | chr5.4:63054823-63054842 | MS.gene50146:CDS | 60.0% | |
| TCACGGTAGGAATGGGGGAG+AGG | + | chr5.4:63054601-63054620 | None:intergenic | 60.0% | |
| ! | CCGCACTCTAATGGACCCTG+TGG | - | chr5.4:63054508-63054527 | MS.gene50146:intron | 60.0% |
| CCGGATGAGGTCGGAGAAGC+TGG | + | chr5.4:63054250-63054269 | None:intergenic | 65.0% | |
| GCTTCACCAATCGGCCGTCG+TGG | + | chr5.4:63054280-63054299 | None:intergenic | 65.0% | |
| AAGAACACCGGGGCCGCCTG+CGG | + | chr5.4:63054474-63054493 | None:intergenic | 70.0% | |
| CCACCTCTCCCTCCCTCCGC+AGG | - | chr5.4:63054455-63054474 | MS.gene50146:intron | 75.0% | |
| CCTCTCCCTCCCTCCGCAGG+CGG | - | chr5.4:63054458-63054477 | MS.gene50146:intron | 75.0% | |
| CCTGCGGAGGGAGGGAGAGG+TGG | + | chr5.4:63054458-63054477 | None:intergenic | 75.0% | |
| ! | AACACCGGGGCCGCCTGCGG+AGG | + | chr5.4:63054471-63054490 | None:intergenic | 80.0% |
| ! | ACACCGGGGCCGCCTGCGGA+GGG | + | chr5.4:63054470-63054489 | None:intergenic | 80.0% |
| ! | CCGCCTGCGGAGGGAGGGAG+AGG | + | chr5.4:63054461-63054480 | None:intergenic | 80.0% |
| ! | CCTCCCTCCGCAGGCGGCCC+CGG | - | chr5.4:63054464-63054483 | MS.gene50146:intron | 85.0% |
| ! | CGGGGCCGCCTGCGGAGGGA+GGG | + | chr5.4:63054466-63054485 | None:intergenic | 85.0% |
| ! | CCGGGGCCGCCTGCGGAGGG+AGG | + | chr5.4:63054467-63054486 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 63052597 | 63055117 | 63052597 | ID=MS.gene50146 |
| chr5.4 | mRNA | 63052597 | 63055117 | 63052597 | ID=MS.gene50146.t1;Parent=MS.gene50146 |
| chr5.4 | exon | 63054554 | 63055117 | 63054554 | ID=MS.gene50146.t1.exon1;Parent=MS.gene50146.t1 |
| chr5.4 | CDS | 63054554 | 63055117 | 63054554 | ID=cds.MS.gene50146.t1;Parent=MS.gene50146.t1 |
| chr5.4 | exon | 63052597 | 63053514 | 63052597 | ID=MS.gene50146.t1.exon2;Parent=MS.gene50146.t1 |
| chr5.4 | CDS | 63052597 | 63053514 | 63052597 | ID=cds.MS.gene50146.t1;Parent=MS.gene50146.t1 |
| Gene Sequence |
| Protein sequence |
