Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50453.t1 | XP_013448908.1 | 83 | 370 | 60 | 2 | 1 | 367 | 1 | 370 | 4.50E-164 | 587.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50453.t1 | A0A072UAU5 | 83.0 | 370 | 60 | 2 | 1 | 367 | 1 | 370 | 3.3e-164 | 587.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051279 | MS.gene50453 | 0.811636 | 6.34E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50453.t1 | MTR_7g062630 | 82.973 | 370 | 60 | 2 | 1 | 367 | 1 | 370 | 0.0 | 625 |
| MS.gene50453.t1 | MTR_6g445490 | 76.963 | 382 | 44 | 4 | 30 | 367 | 3 | 384 | 0.0 | 566 |
| MS.gene50453.t1 | MTR_2g093870 | 70.455 | 88 | 23 | 2 | 144 | 230 | 75 | 160 | 3.40e-30 | 115 |
| MS.gene50453.t1 | MTR_4g078800 | 39.873 | 158 | 73 | 5 | 129 | 278 | 12 | 155 | 2.70e-21 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50453.t1 | AT5G02130 | 42.157 | 306 | 161 | 4 | 48 | 347 | 51 | 346 | 5.94e-70 | 225 |
Find 0 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATTTTTTTTATCAAAATT+TGG | + | 20520:3158-3177 | MS.gene50453:intron | 10.0% |
| !! | AAAAAGATATATATGTAGAT+AGG | - | 20520:6674-6693 | MS.gene50453:intergenic | 15.0% |
| !! | AAAAGATATATATGTAGATA+GGG | - | 20520:6673-6692 | MS.gene50453:intergenic | 15.0% |
| !! | GTAAAATCATTATAAATACA+AGG | + | 20520:5347-5366 | MS.gene50453:intron | 15.0% |
| !! | TATGTTAGATATAAAATCTT+CGG | + | 20520:6329-6348 | MS.gene50453:intron | 15.0% |
| !! | TCAATACTGAATTAAATAAA+TGG | - | 20520:6876-6895 | MS.gene50453:intergenic | 15.0% |
| !! | TTAAAAAGAAACATTTCATA+AGG | - | 20520:4522-4541 | MS.gene50453:intergenic | 15.0% |
| !! | TTAATCCAAAAATATTAAAG+CGG | + | 20520:4967-4986 | MS.gene50453:intron | 15.0% |
| !! | TTATTTACTAATAAGTTGTT+AGG | + | 20520:4992-5011 | MS.gene50453:intron | 15.0% |
| !!! | ATTTTATCAGGAAAAAATAT+AGG | + | 20520:5084-5103 | MS.gene50453:intron | 15.0% |
| !!! | CTTTGGTTTTTTTTTTTTTT+GGG | - | 20520:5710-5729 | MS.gene50453:intergenic | 15.0% |
| !!! | TCTTTGGTTTTTTTTTTTTT+TGG | - | 20520:5711-5730 | MS.gene50453:intergenic | 15.0% |
| !!! | TGAATTTATTTTTCGTATAT+AGG | + | 20520:3927-3946 | MS.gene50453:intron | 15.0% |
| !!! | TGTTTTATTAATTCTCATTT+TGG | + | 20520:3549-3568 | MS.gene50453:intron | 15.0% |
| !!! | TTTCAAATTTAACATCTTTT+TGG | + | 20520:3218-3237 | MS.gene50453:intron | 15.0% |
| !!! | TTTTTGGTTTTTATTTTATG+AGG | + | 20520:3234-3253 | MS.gene50453:intron | 15.0% |
| !! | AAAAACTATCATAGAACAAA+TGG | - | 20520:4949-4968 | MS.gene50453:intergenic | 20.0% |
| !! | AAAACTATCATAGAACAAAT+GGG | - | 20520:4948-4967 | MS.gene50453:intergenic | 20.0% |
| !! | ACTATATCTACATATATAGA+GGG | + | 20520:6441-6460 | MS.gene50453:intron | 20.0% |
| !! | AGATATTTACACAATTAGTT+AGG | + | 20520:5943-5962 | MS.gene50453:intron | 20.0% |
| !! | ATAAATTCAGATAAACACAA+TGG | - | 20520:3916-3935 | MS.gene50453:intergenic | 20.0% |
| !! | ATACTGAATTAAATAAATGG+TGG | - | 20520:6873-6892 | MS.gene50453:intergenic | 20.0% |
| !! | ATCTTATAGATATAGATAAG+TGG | - | 20520:5927-5946 | MS.gene50453:intergenic | 20.0% |
| !! | ATCTTTAGATATTCCTTTAA+TGG | + | 20520:5236-5255 | MS.gene50453:intron | 20.0% |
| !! | ATTCAATTAGTAATTGTAAC+TGG | + | 20520:5793-5812 | MS.gene50453:intron | 20.0% |
| !! | ATTGAATTGAAAGAAAACTT+AGG | - | 20520:5780-5799 | MS.gene50453:intergenic | 20.0% |
| !! | GATATTTACACAATTAGTTA+GGG | + | 20520:5944-5963 | MS.gene50453:intron | 20.0% |
| !! | TAATCCAAAAATATTAAAGC+GGG | + | 20520:4968-4987 | MS.gene50453:intron | 20.0% |
| !! | TCAAATGATATATCTCTAAT+AGG | + | 20520:4553-4572 | MS.gene50453:intron | 20.0% |
| !! | TCTTATAGATATAGATAAGT+GGG | - | 20520:5926-5945 | MS.gene50453:intergenic | 20.0% |
| !! | TTCTCACTAAAAATAAAAAG+AGG | - | 20520:3764-3783 | MS.gene50453:intergenic | 20.0% |
| !!! | ATATTTTTACAGAAACCTTA+TGG | + | 20520:5414-5433 | MS.gene50453:intron | 20.0% |
| !!! | GTTCAAAATTAACGATTTTT+GGG | + | 20520:3284-3303 | MS.gene50453:intron | 20.0% |
| !!! | TGTTCAAAATTAACGATTTT+TGG | + | 20520:3283-3302 | MS.gene50453:intron | 20.0% |
| !!! | TTCTTAGTTTTAATGTTACA+AGG | - | 20520:5553-5572 | MS.gene50453:intergenic | 20.0% |
| !!! | TTTACCATTTTTTCTATGAT+TGG | + | 20520:6828-6847 | MS.gene50453:intron | 20.0% |
| ! | AAACTATCATAGAACAAATG+GGG | - | 20520:4947-4966 | MS.gene50453:intergenic | 25.0% |
| ! | AATTGAAAGAAAACTTAGGT+GGG | - | 20520:5776-5795 | MS.gene50453:intergenic | 25.0% |
| ! | AGAATGATCTGAATGAAATA+CGG | - | 20520:3031-3050 | MS.gene50453:intergenic | 25.0% |
| ! | AGAATTGAGTAATTCTTACT+TGG | + | 20520:3676-3695 | MS.gene50453:CDS | 25.0% |
| ! | ATAGTCCATGATAAACATTA+TGG | - | 20520:6426-6445 | MS.gene50453:intergenic | 25.0% |
| ! | CTATATCTACATATATAGAG+GGG | + | 20520:6442-6461 | MS.gene50453:intron | 25.0% |
| ! | GAATTGAGTAATTCTTACTT+GGG | + | 20520:3677-3696 | MS.gene50453:CDS | 25.0% |
| ! | GACTATATCTACATATATAG+AGG | + | 20520:6440-6459 | MS.gene50453:intron | 25.0% |
| ! | TGAAACCATAATGTTTATCA+TGG | + | 20520:6418-6437 | MS.gene50453:intron | 25.0% |
| ! | TGAGAGATAAAAAACTATGA+GGG | - | 20520:6363-6382 | MS.gene50453:intergenic | 25.0% |
| ! | TGTTCTGTAAATTGTAATGT+AGG | + | 20520:4268-4287 | MS.gene50453:intron | 25.0% |
| ! | TTGAGAGATAAAAAACTATG+AGG | - | 20520:6364-6383 | MS.gene50453:intergenic | 25.0% |
| ! | TTTGAACAAAACACACAAAA+GGG | - | 20520:3322-3341 | MS.gene50453:intergenic | 25.0% |
| ! | TTTGAACAAAACACACAATT+GGG | - | 20520:3271-3290 | MS.gene50453:intergenic | 25.0% |
| !! | CTATGAGTGTCTTTAATTTA+AGG | + | 20520:6254-6273 | MS.gene50453:intron | 25.0% |
| !! | TAATCCCGCTTTAATATTTT+TGG | - | 20520:4975-4994 | MS.gene50453:intergenic | 25.0% |
| !! | TGAACTTTTAAATTGAGTTC+AGG | - | 20520:4693-4712 | MS.gene50453:intergenic | 25.0% |
| !! | TTTCCTTAAAATTTTGCTAG+AGG | + | 20520:3614-3633 | MS.gene50453:intron | 25.0% |
| !! | TTTTCGTATATAGGATGATA+TGG | + | 20520:3936-3955 | MS.gene50453:intron | 25.0% |
| !! | TTTTGAACAAAACACACAAT+TGG | - | 20520:3272-3291 | MS.gene50453:intergenic | 25.0% |
| !!! | CTAACATCTTTTTGGTTTTT+TGG | + | 20520:3343-3362 | MS.gene50453:intron | 25.0% |
| !!! | TTTGTTTTTGTGTGAATAGT+TGG | + | 20520:3370-3389 | MS.gene50453:intron | 25.0% |
| AAACTTAACTTTCTTTGTGC+AGG | + | 20520:6895-6914 | MS.gene50453:intron | 30.0% | |
| AAGTTTAAGTGAGACATCTT+TGG | - | 20520:5727-5746 | MS.gene50453:intergenic | 30.0% | |
| AATGCAGTAAACAACAAAAG+AGG | - | 20520:3726-3745 | MS.gene50453:intergenic | 30.0% | |
| AGCTCCAATCATAGAAAAAA+TGG | - | 20520:6835-6854 | MS.gene50453:intergenic | 30.0% | |
| ATTGAAAGAAAACTTAGGTG+GGG | - | 20520:5775-5794 | MS.gene50453:intergenic | 30.0% | |
| ATTTACCAGAATGTCTTAGA+AGG | + | 20520:4355-4374 | MS.gene50453:CDS | 30.0% | |
| CAAGTCTAGAAAAATAGAAC+AGG | - | 20520:6226-6245 | MS.gene50453:intergenic | 30.0% | |
| CAGGAAAAAATATAGGAATG+TGG | + | 20520:5091-5110 | MS.gene50453:intron | 30.0% | |
| CTTTGAACAAAACACACAAA+AGG | - | 20520:3323-3342 | MS.gene50453:intergenic | 30.0% | |
| GAAAGAGGCAATATATACTT+AGG | + | 20520:4394-4413 | MS.gene50453:CDS | 30.0% | |
| GAATGATCTGAATGAAATAC+GGG | - | 20520:3030-3049 | MS.gene50453:intergenic | 30.0% | |
| GAATTGAAAGAAAACTTAGG+TGG | - | 20520:5777-5796 | MS.gene50453:intergenic | 30.0% | |
| GGAGTAATAACAATCAATCT+AGG | - | 20520:5270-5289 | MS.gene50453:intergenic | 30.0% | |
| TAGGTAATAACTTCTGCTTT+AGG | + | 20520:4572-4591 | MS.gene50453:intron | 30.0% | |
| TCAATACATGAAATGGTCAT+GGG | + | 20520:6518-6537 | MS.gene50453:intron | 30.0% | |
| TCTTAACAAATATGGCTCTT+AGG | + | 20520:4810-4829 | MS.gene50453:CDS | 30.0% | |
| TTCAATACATGAAATGGTCA+TGG | + | 20520:6517-6536 | MS.gene50453:intron | 30.0% | |
| TTTACAGAAACCTTATGGTT+TGG | + | 20520:5419-5438 | MS.gene50453:intron | 30.0% | |
| ! | ACAATGGTTCTGTAAAAAAG+CGG | - | 20520:3900-3919 | MS.gene50453:intergenic | 30.0% |
| ! | GACATTGCATTTTATATGCA+AGG | + | 20520:5608-5627 | MS.gene50453:intron | 30.0% |
| ! | GCTAGTTGATGTAAATTACT+TGG | + | 20520:3874-3893 | MS.gene50453:intron | 30.0% |
| ! | GGTCTATAGATAGGTTTTTA+TGG | + | 20520:6713-6732 | MS.gene50453:intron | 30.0% |
| ! | GTTCAAAGCTAACATCTTTT+TGG | + | 20520:3335-3354 | MS.gene50453:intron | 30.0% |
| ! | TCTCCTCTAGCAAAATTTTA+AGG | - | 20520:3620-3639 | MS.gene50453:intergenic | 30.0% |
| ! | TTGCATTTTATATGCAAGGT+CGG | + | 20520:5612-5631 | MS.gene50453:intron | 30.0% |
| ! | TTTTCTAGATATCTCTTGCT+AGG | + | 20520:6692-6711 | MS.gene50453:intron | 30.0% |
| !! | CTGTTCTATTTTTCTAGACT+TGG | + | 20520:6224-6243 | MS.gene50453:intron | 30.0% |
| !! | GTAGGCTTAATGTTTTTGTA+TGG | + | 20520:4492-4511 | MS.gene50453:intron | 30.0% |
| !! | TGTCTACATTGTTTTGTGAA+AGG | + | 20520:3500-3519 | MS.gene50453:CDS | 30.0% |
| !!! | CATCTTTTTGGTTTTTTGGT+TGG | + | 20520:3347-3366 | MS.gene50453:intron | 30.0% |
| !!! | CTCTCAATAGCGTTTTTTAA+GGG | + | 20520:6377-6396 | MS.gene50453:intron | 30.0% |
| !!! | GAATTTTTTTCAGTGTGTCT+TGG | + | 20520:3781-3800 | MS.gene50453:intron | 30.0% |
| !!! | TCTCTCAATAGCGTTTTTTA+AGG | + | 20520:6376-6395 | MS.gene50453:intron | 30.0% |
| AAATATAGGAATGTGGAACG+TGG | + | 20520:5098-5117 | MS.gene50453:intron | 35.0% | |
| AAGCCTCCTATGTAAAAAAC+AGG | + | 20520:6556-6575 | MS.gene50453:intron | 35.0% | |
| AAGTTGTCCTATAGCAAACA+TGG | - | 20520:4458-4477 | MS.gene50453:intergenic | 35.0% | |
| AATTCTTACTTGGGAATCAG+AGG | + | 20520:3686-3705 | MS.gene50453:CDS | 35.0% | |
| ACCATTTCATGTATTGTACG+CGG | - | 20520:6588-6607 | MS.gene50453:intergenic | 35.0% | |
| ACTATGGCAAATCAGATCTA+TGG | + | 20520:4634-4653 | MS.gene50453:CDS | 35.0% | |
| AGAGGCAATATATACTTAGG+AGG | + | 20520:4397-4416 | MS.gene50453:CDS | 35.0% | |
| AGCCTCCTATGTAAAAAACA+GGG | + | 20520:6557-6576 | MS.gene50453:intron | 35.0% | |
| AGGACAACTTGAATCACATT+TGG | + | 20520:4468-4487 | MS.gene50453:CDS | 35.0% | |
| AGGACTGAAAATGTGAATGT+GGG | + | 20520:5012-5031 | MS.gene50453:intron | 35.0% | |
| ATACAGAACAACAAGCTGTT+AGG | - | 20520:4754-4773 | MS.gene50453:intergenic | 35.0% | |
| ATATCATTTCTCTTTACCGC+GGG | - | 20520:6934-6953 | MS.gene50453:intergenic | 35.0% | |
| ATGATCAGTCTGAGTAAACA+AGG | - | 20520:6194-6213 | MS.gene50453:intergenic | 35.0% | |
| ATTCGTGCTAGAGCAATTAA+AGG | + | 20520:4030-4049 | MS.gene50453:CDS | 35.0% | |
| CATAGATGGTTTAATGTTGC+AGG | + | 20520:4432-4451 | MS.gene50453:CDS | 35.0% | |
| CATATCATTTCTCTTTACCG+CGG | - | 20520:6935-6954 | MS.gene50453:intergenic | 35.0% | |
| CATGGGTTCAATACATGAAA+TGG | + | 20520:6511-6530 | MS.gene50453:intron | 35.0% | |
| CCTATGTAAAAAACAGGGTA+AGG | + | 20520:6562-6581 | MS.gene50453:intron | 35.0% | |
| CGTACAATACATGAAATGGT+GGG | + | 20520:6588-6607 | MS.gene50453:intron | 35.0% | |
| CTAGGTAGTTGTACCATTAA+AGG | - | 20520:5252-5271 | MS.gene50453:intergenic | 35.0% | |
| CTCACTTAGTCACCTTAAAA+AGG | + | 20520:5657-5676 | MS.gene50453:intron | 35.0% | |
| GACAACTTGAATCACATTTG+GGG | + | 20520:4470-4489 | MS.gene50453:CDS | 35.0% | |
| GATATAGATAAGTGGGCATA+AGG | - | 20520:5919-5938 | MS.gene50453:intergenic | 35.0% | |
| GGACAACTTGAATCACATTT+GGG | + | 20520:4469-4488 | MS.gene50453:CDS | 35.0% | |
| GGCTGTTGTCTTAACAAATA+TGG | + | 20520:4802-4821 | MS.gene50453:CDS | 35.0% | |
| GGTAAAGAGAAATGATATGG+TGG | + | 20520:6936-6955 | MS.gene50453:CDS | 35.0% | |
| GTAACTGGAAAATCATTGAC+AGG | + | 20520:5808-5827 | MS.gene50453:intron | 35.0% | |
| GTGATCTCATTATAGACACA+CGG | + | 20520:5373-5392 | MS.gene50453:intron | 35.0% | |
| TACACACTGAGATATGTAAG+AGG | - | 20520:6013-6032 | MS.gene50453:intergenic | 35.0% | |
| TAGGACTGAAAATGTGAATG+TGG | + | 20520:5011-5030 | MS.gene50453:intron | 35.0% | |
| TCATTCAGATCATTCTACTC+TGG | + | 20520:3035-3054 | MS.gene50453:CDS | 35.0% | |
| TCTATAGCAGCAGTGATTTA+TGG | + | 20520:5980-5999 | MS.gene50453:intron | 35.0% | |
| TGATAAATGCATTGAGCTTG+TGG | + | 20520:3972-3991 | MS.gene50453:CDS | 35.0% | |
| TGATCAGTCTGAGTAAACAA+GGG | - | 20520:6193-6212 | MS.gene50453:intergenic | 35.0% | |
| TGCAGACGAGTATTTGAAAA+AGG | + | 20520:4606-4625 | MS.gene50453:CDS | 35.0% | |
| TTACCTTCAGATTCAGTTTC+AGG | - | 20520:5875-5894 | MS.gene50453:intergenic | 35.0% | |
| TTCGTGCTAGAGCAATTAAA+GGG | + | 20520:4031-4050 | MS.gene50453:CDS | 35.0% | |
| TTGTGAAATTCATCATTCCC+TGG | + | 20520:6107-6126 | MS.gene50453:intron | 35.0% | |
| TTTGGGGGGTTATATTATAG+GGG | + | 20520:5480-5499 | MS.gene50453:intron | 35.0% | |
| ! | ACTTTATCTAGAGTTGGAAC+AGG | + | 20520:3842-3861 | MS.gene50453:CDS | 35.0% |
| ! | CTTTGGGGGGTTATATTATA+GGG | + | 20520:5479-5498 | MS.gene50453:intron | 35.0% |
| ! | GCATTGTGCATCATTTTATC+AGG | + | 20520:5072-5091 | MS.gene50453:intron | 35.0% |
| ! | TGCATTTTATATGCAAGGTC+GGG | + | 20520:5613-5632 | MS.gene50453:intron | 35.0% |
| ! | TGTTGTTCTGTATTTGTTGC+AGG | + | 20520:4761-4780 | MS.gene50453:intron | 35.0% |
| !! | AATATGCTTTGAGAGAAGCT+AGG | + | 20520:3108-3127 | MS.gene50453:CDS | 35.0% |
| !! | GTCTATTGTGTGACTTGTTT+CGG | + | 20520:5143-5162 | MS.gene50453:intron | 35.0% |
| !! | GTGACTTGTTTCGGATATAA+GGG | + | 20520:5152-5171 | MS.gene50453:intron | 35.0% |
| !! | GTGTTTTGGATCATTTCCTT+GGG | - | 20520:3449-3468 | MS.gene50453:intergenic | 35.0% |
| !! | TGTGACTTGTTTCGGATATA+AGG | + | 20520:5151-5170 | MS.gene50453:intron | 35.0% |
| !! | TTTGAAAAAGGCACTGACTA+TGG | + | 20520:4618-4637 | MS.gene50453:CDS | 35.0% |
| !!! | CCTTACCCTGTTTTTTACAT+AGG | - | 20520:6565-6584 | MS.gene50453:intergenic | 35.0% |
| !!! | CTTTTTAAGGTGACTAAGTG+AGG | - | 20520:5659-5678 | MS.gene50453:intergenic | 35.0% |
| !!! | TACCCTGTTTTTTACATAGG+AGG | - | 20520:6562-6581 | MS.gene50453:intergenic | 35.0% |
| AAAGTTACCACAGCATAGCT+TGG | - | 20520:4205-4224 | MS.gene50453:intergenic | 40.0% | |
| AAATGGGGTTTCACTATCAC+TGG | - | 20520:4932-4951 | MS.gene50453:intergenic | 40.0% | |
| AAGGGAGATATTAAGTCAGG+TGG | + | 20520:4069-4088 | MS.gene50453:intron | 40.0% | |
| AATACTCGTCTGCATTAGAG+AGG | - | 20520:4600-4619 | MS.gene50453:intergenic | 40.0% | |
| AATGATGCACAATGCATGCT+TGG | - | 20520:5067-5086 | MS.gene50453:intergenic | 40.0% | |
| AATGTGAATGTGGGACCAAA+AGG | + | 20520:5021-5040 | MS.gene50453:intron | 40.0% | |
| AGAAGAATACCTCTTCTCTG+AGG | + | 20520:5448-5467 | MS.gene50453:intron | 40.0% | |
| ATAGACACACGGAATACACA+CGG | + | 20520:5384-5403 | MS.gene50453:intron | 40.0% | |
| ATAGGATGATATGGCATCTG+CGG | + | 20520:3945-3964 | MS.gene50453:intron | 40.0% | |
| ATAGTTGGATCGTACGGTAT+CGG | + | 20520:3385-3404 | MS.gene50453:intron | 40.0% | |
| ATGATGCACAATGCATGCTT+GGG | - | 20520:5066-5085 | MS.gene50453:intergenic | 40.0% | |
| ATGGTAAATCTCGTGTCAAG+TGG | - | 20520:6816-6835 | MS.gene50453:intergenic | 40.0% | |
| ATGTGAATGTGGGACCAAAA+GGG | + | 20520:5022-5041 | MS.gene50453:intron | 40.0% | |
| ATTATCTGACACCAAATGCC+AGG | - | 20520:6128-6147 | MS.gene50453:intergenic | 40.0% | |
| ATTCATCATTCCCTGGCATT+TGG | + | 20520:6114-6133 | MS.gene50453:intron | 40.0% | |
| CATATATAGAGGGGTAACCT+TGG | + | 20520:6451-6470 | MS.gene50453:intron | 40.0% | |
| CCAAAACACGAGAATTCCAA+AGG | + | 20520:3460-3479 | MS.gene50453:CDS | 40.0% | |
| CCTAGAGTATGCAACTTCAT+AGG | + | 20520:5288-5307 | MS.gene50453:intron | 40.0% | |
| CCTATGAAGTTGCATACTCT+AGG | - | 20520:5291-5310 | MS.gene50453:intergenic | 40.0% | |
| CGCGGTAAAGAGAAATGATA+TGG | + | 20520:6933-6952 | MS.gene50453:CDS | 40.0% | |
| CGGAGAGATTTGTCAAAGAA+AGG | - | 20520:4180-4199 | MS.gene50453:intergenic | 40.0% | |
| CTCTTGCTAGGTCTATAGAT+AGG | + | 20520:6704-6723 | MS.gene50453:intron | 40.0% | |
| CTTACAACTGAGTTAACCCA+AGG | + | 20520:3430-3449 | MS.gene50453:CDS | 40.0% | |
| GAAGCTAGGTCTGAAAAATC+AGG | + | 20520:3122-3141 | MS.gene50453:CDS | 40.0% | |
| GATCTGAATGAAATACGGGA+GGG | - | 20520:3026-3045 | MS.gene50453:intergenic | 40.0% | |
| GATGCAATTGAGAAGCTCAA+TGG | + | 20520:3647-3666 | MS.gene50453:CDS | 40.0% | |
| GCCACTGAACTTAAAGAAAG+AGG | + | 20520:4379-4398 | MS.gene50453:CDS | 40.0% | |
| GCGTACAATACATGAAATGG+TGG | + | 20520:6587-6606 | MS.gene50453:intron | 40.0% | |
| GGCAATATATACTTAGGAGG+TGG | + | 20520:4400-4419 | MS.gene50453:CDS | 40.0% | |
| GGTGGTAACATGAACATAGA+TGG | + | 20520:4418-4437 | MS.gene50453:CDS | 40.0% | |
| GTGAAGGGAGATATTAAGTC+AGG | + | 20520:4066-4085 | MS.gene50453:CDS | 40.0% | |
| GTGTGAATAGTTGGATCGTA+CGG | + | 20520:3379-3398 | MS.gene50453:intron | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | + | 20520:6487-6506 | MS.gene50453:intron | 40.0% | |
| TAGCAGCAGTGATTTATGGT+TGG | + | 20520:5984-6003 | MS.gene50453:intron | 40.0% | |
| TAGCTGCTGTTGATGTTGTT+CGG | + | 20520:3078-3097 | MS.gene50453:CDS | 40.0% | |
| TAGTGCAACTTTAGTGCACT+GGG | + | 20520:6644-6663 | MS.gene50453:intron | 40.0% | |
| TCATGTGACTGAAAGGTCAT+GGG | + | 20520:6494-6513 | MS.gene50453:intron | 40.0% | |
| TGAACAGTCACAAACAGACA+TGG | - | 20520:6076-6095 | MS.gene50453:intergenic | 40.0% | |
| TGATCTGAATGAAATACGGG+AGG | - | 20520:3027-3046 | MS.gene50453:intergenic | 40.0% | |
| TTAGTGCAACTTTAGTGCAC+TGG | + | 20520:6643-6662 | MS.gene50453:intron | 40.0% | |
| TTATCTGACACCAAATGCCA+GGG | - | 20520:6127-6146 | MS.gene50453:intergenic | 40.0% | |
| TTCGGATATAAGGGAATGTG+AGG | + | 20520:5161-5180 | MS.gene50453:intron | 40.0% | |
| TTCTCTCTGACCAAACCATA+AGG | - | 20520:5432-5451 | MS.gene50453:intergenic | 40.0% | |
| ! | AAGAAGCATGTGTGTGTGTT+GGG | - | 20520:6167-6186 | MS.gene50453:intergenic | 40.0% |
| ! | AATGAAATACGGGAGGGTTT+TGG | - | 20520:3020-3039 | MS.gene50453:intergenic | 40.0% |
| ! | ACTTGAATCACATTTGGGGT+AGG | + | 20520:4474-4493 | MS.gene50453:intron | 40.0% |
| ! | GCCTCTTTCTTTAAGTTCAG+TGG | - | 20520:4383-4402 | MS.gene50453:intergenic | 40.0% |
| ! | GCTAGAAACTCGCCTTTTTA+AGG | - | 20520:5672-5691 | MS.gene50453:intergenic | 40.0% |
| ! | GGTAATATTATTGTGCCGCT+TGG | + | 20520:5890-5909 | MS.gene50453:intron | 40.0% |
| ! | TAAGAAGCATGTGTGTGTGT+TGG | - | 20520:6168-6187 | MS.gene50453:intergenic | 40.0% |
| ! | TGCTGTACTATTTGCCCTTT+TGG | - | 20520:5039-5058 | MS.gene50453:intergenic | 40.0% |
| !! | CGTGTTTTGGATCATTTCCT+TGG | - | 20520:3450-3469 | MS.gene50453:intergenic | 40.0% |
| !! | GCTTTGGGGGGTTATATTAT+AGG | + | 20520:5478-5497 | MS.gene50453:intron | 40.0% |
| !! | GGCATTTGGTGTCAGATAAT+TGG | + | 20520:6128-6147 | MS.gene50453:intron | 40.0% |
| !!! | CCTTTGGAATTCTCGTGTTT+TGG | - | 20520:3463-3482 | MS.gene50453:intergenic | 40.0% |
| AAGAAAGGTTCAGCTGCAAC+AGG | - | 20520:4165-4184 | MS.gene50453:intergenic | 45.0% | |
| AGCGAGCAAAGCAATTCCTT+TGG | - | 20520:3479-3498 | MS.gene50453:intergenic | 45.0% | |
| AGGAACAATATGCCACAACC+AGG | - | 20520:4734-4753 | MS.gene50453:intergenic | 45.0% | |
| AGGGCTCATTGAACTTGTGA+AGG | + | 20520:4050-4069 | MS.gene50453:CDS | 45.0% | |
| AGTTGCTGCATATGAAGCTC+AGG | + | 20520:3815-3834 | MS.gene50453:intron | 45.0% | |
| ATGCAGAGTTCCAACAAGCT+AGG | + | 20520:4308-4327 | MS.gene50453:CDS | 45.0% | |
| ATTATCACTGAGCCTGGTTG+TGG | + | 20520:4719-4738 | MS.gene50453:intron | 45.0% | |
| CAGATCATTCTACTCTGGTG+TGG | + | 20520:3040-3059 | MS.gene50453:CDS | 45.0% | |
| CAGCAGTGATTTATGGTTGG+TGG | + | 20520:5987-6006 | MS.gene50453:intron | 45.0% | |
| CATCAGTCATTCTTCGATCG+TGG | + | 20520:4240-4259 | MS.gene50453:intron | 45.0% | |
| CCACCTGAAACTGAATCTGA+AGG | + | 20520:5869-5888 | MS.gene50453:CDS | 45.0% | |
| CCTTCAGATTCAGTTTCAGG+TGG | - | 20520:5872-5891 | MS.gene50453:intergenic | 45.0% | |
| GCCGCGTACAATACATGAAA+TGG | + | 20520:6584-6603 | MS.gene50453:intron | 45.0% | |
| GGGCTCATTGAACTTGTGAA+GGG | + | 20520:4051-4070 | MS.gene50453:CDS | 45.0% | |
| GTCACAAACAGACATGGTTG+TGG | - | 20520:6070-6089 | MS.gene50453:intergenic | 45.0% | |
| GTCATGTGACTGAAAGGTCA+TGG | + | 20520:6493-6512 | MS.gene50453:intron | 45.0% | |
| GTGACAGAAACAAGAGCTCT+TGG | - | 20520:2996-3015 | MS.gene50453:intergenic | 45.0% | |
| GTTAAGACAACAGCCAGCTT+GGG | - | 20520:4797-4816 | MS.gene50453:intergenic | 45.0% | |
| TAGTTGGATCGTACGGTATC+GGG | + | 20520:3386-3405 | MS.gene50453:intron | 45.0% | |
| TGTTAAGACAACAGCCAGCT+TGG | - | 20520:4798-4817 | MS.gene50453:intergenic | 45.0% | |
| ! | AACCAGGCTCAGTGATAATG+CGG | - | 20520:4718-4737 | MS.gene50453:intergenic | 45.0% |
| ! | AGATGTTCTGCCTAGCTTGT+TGG | - | 20520:4321-4340 | MS.gene50453:intergenic | 45.0% |
| ! | CAGATTCAGTTTCAGGTGGT+GGG | - | 20520:5868-5887 | MS.gene50453:intergenic | 45.0% |
| ! | GGCTGGACTTTATCTAGAGT+TGG | + | 20520:3836-3855 | MS.gene50453:CDS | 45.0% |
| ! | TCAGATTCAGTTTCAGGTGG+TGG | - | 20520:5869-5888 | MS.gene50453:intergenic | 45.0% |
| !! | ACCTCTTCTCTGAGGAGTTT+TGG | + | 20520:5456-5475 | MS.gene50453:intron | 45.0% |
| !! | ATCGTACGGTATCGGGTTTT+TGG | + | 20520:3393-3412 | MS.gene50453:CDS | 45.0% |
| !! | TGGCTCCTTCTAAGACATTC+TGG | - | 20520:4363-4382 | MS.gene50453:intergenic | 45.0% |
| !! | TTGCAGGCCATGTTTGCTAT+AGG | + | 20520:4448-4467 | MS.gene50453:CDS | 45.0% |
| !! | TTTTGGGTCAAGTAGCCTAG+TGG | - | 20520:5694-5713 | MS.gene50453:intergenic | 45.0% |
| !!! | CTCTGAGGAGTTTTGGCTTT+GGG | + | 20520:5463-5482 | MS.gene50453:intron | 45.0% |
| !!! | TCTCTGAGGAGTTTTGGCTT+TGG | + | 20520:5462-5481 | MS.gene50453:intron | 45.0% |
| !!! | TCTGAGGAGTTTTGGCTTTG+GGG | + | 20520:5464-5483 | MS.gene50453:intron | 45.0% |
| AAATCTCGTGTCAAGTGGCG+AGG | - | 20520:6811-6830 | MS.gene50453:intergenic | 50.0% | |
| AATCTCGTGTCAAGTGGCGA+GGG | - | 20520:6810-6829 | MS.gene50453:intergenic | 50.0% | |
| AGGCGAAAAACATCCCAAGC+TGG | + | 20520:4781-4800 | MS.gene50453:intron | 50.0% | |
| AGGTGACTAAGTGAGGAGTC+CGG | - | 20520:5652-5671 | MS.gene50453:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | 20520:6471-6490 | MS.gene50453:intergenic | 50.0% | |
| CTCTGCATACGATAGAGCAG+CGG | - | 20520:4296-4315 | MS.gene50453:intergenic | 50.0% | |
| GAATGTGAGGAGAGAGAGAG+GGG | + | 20520:5174-5193 | MS.gene50453:intron | 50.0% | |
| GCCAAAACTCCTCAGAGAAG+AGG | - | 20520:5460-5479 | MS.gene50453:intergenic | 50.0% | |
| GGAATGTGAGGAGAGAGAGA+GGG | + | 20520:5173-5192 | MS.gene50453:intron | 50.0% | |
| GTGGGCATAAGGTAACCAAG+CGG | - | 20520:5908-5927 | MS.gene50453:intergenic | 50.0% | |
| TACCGCATTATCACTGAGCC+TGG | + | 20520:4713-4732 | MS.gene50453:intron | 50.0% | |
| TGCCAACTGAGCTAAGCTCA+CGG | - | 20520:5586-5605 | MS.gene50453:intergenic | 50.0% | |
| ! | CATGTGTGTGTGTTGGGTTG+AGG | - | 20520:6161-6180 | MS.gene50453:intergenic | 50.0% |
| ! | TACCACAGCATAGCTTGGTG+CGG | - | 20520:4200-4219 | MS.gene50453:intergenic | 50.0% |
| !! | AAGGCGAGTTTCTAGCCACT+AGG | + | 20520:5676-5695 | MS.gene50453:intron | 50.0% |
| !! | GAAATGGTGGGTCACCTTCT+CGG | + | 20520:6600-6619 | MS.gene50453:intron | 50.0% |
| !! | TGTGTGTGTTGGGTTGAGGA+CGG | - | 20520:6157-6176 | MS.gene50453:intergenic | 50.0% |
| !!! | CTGAGGAGTTTTGGCTTTGG+GGG | + | 20520:5465-5484 | MS.gene50453:intron | 50.0% |
| !!! | TGAGGAGTTTTGGCTTTGGG+GGG | + | 20520:5466-5485 | MS.gene50453:intron | 50.0% |
| ACGTTCGCTTGTGGTTGAGG+AGG | + | 20520:4856-4875 | MS.gene50453:CDS | 55.0% | |
| ACTAAAGCTCCCGCATTCGC+AGG | - | 20520:6628-6647 | MS.gene50453:intergenic | 55.0% | |
| ACTAAGTGAGGAGTCCGGGA+TGG | - | 20520:5647-5666 | MS.gene50453:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+GGG | - | 20520:5584-5603 | MS.gene50453:intergenic | 55.0% | |
| CTAAGTGAGGAGTCCGGGAT+GGG | - | 20520:5646-5665 | MS.gene50453:intergenic | 55.0% | |
| CTTCTCGGATCCTGCGAATG+CGG | + | 20520:6615-6634 | MS.gene50453:intron | 55.0% | |
| GCAGAAGTCACGTTCGCTTG+TGG | + | 20520:4847-4866 | MS.gene50453:CDS | 55.0% | |
| GCCAACTGAGCTAAGCTCAC+GGG | - | 20520:5585-5604 | MS.gene50453:intergenic | 55.0% | |
| GCTGCATATGAAGCTCAGGC+TGG | + | 20520:3819-3838 | MS.gene50453:CDS | 55.0% | |
| GGATGATATGGCATCTGCGG+TGG | + | 20520:3948-3967 | MS.gene50453:intron | 55.0% | |
| GGGAATGTGAGGAGAGAGAG+AGG | + | 20520:5172-5191 | MS.gene50453:intron | 55.0% | |
| GGTGACTAAGTGAGGAGTCC+GGG | - | 20520:5651-5670 | MS.gene50453:intergenic | 55.0% | |
| GTCACGTTCGCTTGTGGTTG+AGG | + | 20520:4853-4872 | MS.gene50453:CDS | 55.0% | |
| GTGGAACGTGGAATGCGACT+TGG | + | 20520:5110-5129 | MS.gene50453:intron | 55.0% | |
| TTCTCGGATCCTGCGAATGC+GGG | + | 20520:6616-6635 | MS.gene50453:intron | 55.0% | |
| ! | GGTGGGGCATCAAAGAAGCA+TGG | - | 20520:5759-5778 | MS.gene50453:intergenic | 55.0% |
| ! | GTGGAATGCGACTTGGCAGA+GGG | + | 20520:5117-5136 | MS.gene50453:intron | 55.0% |
| ! | TGGAATGCGACTTGGCAGAG+GGG | + | 20520:5118-5137 | MS.gene50453:intron | 55.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | + | 20520:6460-6479 | MS.gene50453:intron | 60.0% | |
| CCCCGTGAGCTTAGCTCAGT+TGG | + | 20520:5581-5600 | MS.gene50453:intron | 60.0% | |
| CGCATTCGCAGGATCCGAGA+AGG | - | 20520:6617-6636 | MS.gene50453:intergenic | 60.0% | |
| CTCCGCACCAAGCTATGCTG+TGG | + | 20520:4195-4214 | MS.gene50453:CDS | 60.0% | |
| GTCGGGTTCGAATCCCATCC+CGG | + | 20520:5630-5649 | MS.gene50453:intron | 60.0% | |
| ! | AGGTGCTGCAGCTAAACCCG+CGG | + | 20520:6915-6934 | MS.gene50453:intron | 60.0% |
| ! | CGTGGAATGCGACTTGGCAG+AGG | + | 20520:5116-5135 | MS.gene50453:intron | 60.0% |
| ! | GGAATGCGACTTGGCAGAGG+GGG | + | 20520:5119-5138 | MS.gene50453:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 20520 | gene | 2954 | 6970 | 2954 | ID=MS.gene50453 |
| 20520 | mRNA | 2954 | 6970 | 2954 | ID=MS.gene50453.t1;Parent=MS.gene50453 |
| 20520 | exon | 2954 | 3143 | 2954 | ID=MS.gene50453.t1.exon1;Parent=MS.gene50453.t1 |
| 20520 | CDS | 2954 | 3143 | 2954 | ID=cds.MS.gene50453.t1;Parent=MS.gene50453.t1 |
| 20520 | exon | 3389 | 3521 | 3389 | ID=MS.gene50453.t1.exon2;Parent=MS.gene50453.t1 |
| 20520 | CDS | 3389 | 3521 | 3389 | ID=cds.MS.gene50453.t1;Parent=MS.gene50453.t1 |
| 20520 | exon | 3634 | 3707 | 3634 | ID=MS.gene50453.t1.exon3;Parent=MS.gene50453.t1 |
| 20520 | CDS | 3634 | 3707 | 3634 | ID=cds.MS.gene50453.t1;Parent=MS.gene50453.t1 |
| 20520 | exon | 3817 | 3863 | 3817 | ID=MS.gene50453.t1.exon4;Parent=MS.gene50453.t1 |
| 20520 | CDS | 3817 | 3863 | 3817 | ID=cds.MS.gene50453.t1;Parent=MS.gene50453.t1 |
| 20520 | exon | 3949 | 4087 | 3949 | ID=MS.gene50453.t1.exon5;Parent=MS.gene50453.t1 |
| 20520 | CDS | 3949 | 4087 | 3949 | ID=cds.MS.gene50453.t1;Parent=MS.gene50453.t1 |
| 20520 | exon | 4172 | 4216 | 4172 | ID=MS.gene50453.t1.exon6;Parent=MS.gene50453.t1 |
| 20520 | CDS | 4172 | 4216 | 4172 | ID=cds.MS.gene50453.t1;Parent=MS.gene50453.t1 |
| 20520 | exon | 4290 | 4491 | 4290 | ID=MS.gene50453.t1.exon7;Parent=MS.gene50453.t1 |
| 20520 | CDS | 4290 | 4491 | 4290 | ID=cds.MS.gene50453.t1;Parent=MS.gene50453.t1 |
| 20520 | exon | 4594 | 4655 | 4594 | ID=MS.gene50453.t1.exon8;Parent=MS.gene50453.t1 |
| 20520 | CDS | 4594 | 4655 | 4594 | ID=cds.MS.gene50453.t1;Parent=MS.gene50453.t1 |
| 20520 | exon | 4783 | 4877 | 4783 | ID=MS.gene50453.t1.exon9;Parent=MS.gene50453.t1 |
| 20520 | CDS | 4783 | 4877 | 4783 | ID=cds.MS.gene50453.t1;Parent=MS.gene50453.t1 |
| 20520 | exon | 5830 | 5890 | 5830 | ID=MS.gene50453.t1.exon10;Parent=MS.gene50453.t1 |
| 20520 | CDS | 5830 | 5890 | 5830 | ID=cds.MS.gene50453.t1;Parent=MS.gene50453.t1 |
| 20520 | exon | 6917 | 6970 | 6917 | ID=MS.gene50453.t1.exon11;Parent=MS.gene50453.t1 |
| 20520 | CDS | 6917 | 6970 | 6917 | ID=cds.MS.gene50453.t1;Parent=MS.gene50453.t1 |
| Gene Sequence |
| Protein sequence |
