AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50501

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50501.t1 MTR_7g095220 99.710 345 1 0 1 345 1 345 0.0 707
MS.gene50501.t1 MTR_3g085570 30.620 258 157 7 2 250 33 277 2.04e-25 105
MS.gene50501.t1 MTR_8g080370 30.415 217 136 5 2 214 49 254 2.97e-22 97.1
MS.gene50501.t1 MTR_8g085600 30.769 195 121 5 4 194 77 261 2.89e-21 94.4
MS.gene50501.t1 MTR_4g114110 30.986 213 132 6 2 210 79 280 2.96e-20 91.7
MS.gene50501.t1 MTR_2g008440 31.004 229 122 6 2 194 41 269 4.89e-19 88.2
MS.gene50501.t1 MTR_2g102370 28.111 217 129 6 3 200 2 210 2.42e-18 85.5
MS.gene50501.t1 MTR_2g094093 27.554 323 187 15 4 300 20 321 3.72e-18 84.7
MS.gene50501.t1 MTR_8g030940 25.723 311 197 10 4 294 25 321 1.68e-17 82.8
MS.gene50501.t1 MTR_4g011900 26.522 230 142 6 3 214 4 224 3.54e-17 82.0
MS.gene50501.t1 MTR_0105s0130 23.148 324 201 10 4 297 89 394 4.22e-17 82.4
MS.gene50501.t1 MTR_0345s0010 23.148 324 201 10 4 297 89 394 5.28e-17 82.0
MS.gene50501.t1 MTR_0105s0170 23.148 324 201 10 4 297 102 407 7.06e-17 81.6
MS.gene50501.t1 MTR_1330s0010 23.148 324 201 10 4 297 102 407 7.58e-17 81.6
MS.gene50501.t1 MTR_0105s0040 22.162 370 233 12 4 343 187 531 1.35e-16 81.3
MS.gene50501.t1 MTR_0105s0020 22.840 324 202 10 4 297 89 394 1.91e-16 80.5
MS.gene50501.t1 MTR_2g019230 29.493 217 136 7 4 213 52 258 9.38e-16 78.2
MS.gene50501.t1 MTR_7g096420 28.899 218 140 7 4 210 34 247 1.69e-15 77.4
MS.gene50501.t1 MTR_3g108860 28.767 219 119 6 3 213 16 205 7.43e-15 75.1
MS.gene50501.t1 MTR_7g029290 25.079 315 191 13 8 295 59 355 7.63e-15 75.5
MS.gene50501.t1 MTR_6g023805 24.380 242 148 7 8 231 60 284 4.97e-14 72.8
MS.gene50501.t1 MTR_0496s0010 21.184 321 207 9 4 295 71 374 6.11e-14 72.8
MS.gene50501.t1 MTR_8g085650 24.830 294 160 9 3 259 6 275 1.66e-13 70.9
MS.gene50501.t1 MTR_4g022400 22.523 333 196 10 2 297 66 373 2.56e-13 70.9
MS.gene50501.t1 MTR_7g070320 30.049 203 111 10 65 253 489 674 2.69e-13 71.2
MS.gene50501.t1 MTR_8g468030 23.645 203 137 4 13 214 159 344 1.41e-12 68.9
MS.gene50501.t1 MTR_4g108280 24.186 215 143 5 2 214 29 225 2.16e-12 67.8
MS.gene50501.t1 MTR_3g094850 27.136 199 118 4 2 192 7 186 4.16e-12 67.0
MS.gene50501.t1 MTR_4g022260 21.605 324 206 9 4 297 71 376 6.29e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50501.t1 AT3G63220 67.536 345 112 0 1 345 1 345 1.82e-180 503
MS.gene50501.t1 AT3G63220 67.536 345 112 0 1 345 8 352 3.07e-180 503
MS.gene50501.t1 AT3G63220 67.536 345 112 0 1 345 8 352 3.07e-180 503
MS.gene50501.t1 AT1G16250 29.659 381 216 12 4 343 8 377 1.73e-34 130
MS.gene50501.t1 AT1G16250 29.659 381 216 12 4 343 8 377 1.73e-34 130
MS.gene50501.t1 AT1G67480 31.776 214 133 4 4 214 39 242 6.27e-24 101
MS.gene50501.t1 AT1G67480 31.776 214 133 4 4 214 39 242 6.27e-24 101
MS.gene50501.t1 AT1G67480 31.776 214 133 4 4 214 39 242 6.27e-24 101
MS.gene50501.t1 AT1G55270 32.308 195 118 5 4 194 78 262 2.83e-22 97.4
MS.gene50501.t1 AT2G24540 30.500 200 116 4 4 194 28 213 2.28e-21 94.4
MS.gene50501.t1 AT1G27420 27.692 195 132 3 2 191 8 198 1.04e-18 86.3
MS.gene50501.t1 AT4G03030 30.769 221 133 7 4 207 38 255 1.39e-18 86.7
MS.gene50501.t1 AT1G80440 27.876 226 140 6 3 214 2 218 2.92e-18 85.1
MS.gene50501.t1 AT1G14330 22.327 318 206 6 4 295 94 396 2.98e-17 82.8
MS.gene50501.t1 AT5G03000 28.814 236 141 8 4 229 39 257 2.94e-16 79.3
MS.gene50501.t1 AT5G03020 28.571 189 116 5 10 191 22 198 4.18e-16 78.6
MS.gene50501.t1 AT2G02870 23.013 239 169 3 4 242 117 340 1.84e-15 77.4
MS.gene50501.t1 AT2G02870 23.013 239 169 3 4 242 117 340 1.84e-15 77.4
MS.gene50501.t1 AT2G02870 23.013 239 169 3 4 242 117 340 1.84e-15 77.4
MS.gene50501.t1 AT5G02980 27.083 240 128 6 2 215 11 229 6.05e-15 75.1
MS.gene50501.t1 AT1G30090 30.594 219 131 9 4 213 53 259 8.36e-15 75.5
MS.gene50501.t1 AT3G27150 23.988 321 193 11 12 301 78 378 1.03e-14 75.1
MS.gene50501.t1 AT3G27150 23.988 321 193 11 12 301 78 378 1.03e-14 75.1
MS.gene50501.t1 AT1G26930 23.944 213 142 5 4 214 71 265 1.07e-13 72.0
MS.gene50501.t1 AT1G55270 32.812 128 74 4 69 194 19 136 1.72e-13 70.5
MS.gene50501.t1 AT2G22030 27.411 197 122 4 2 192 23 204 2.34e-13 70.9
MS.gene50501.t1 AT3G61350 29.255 188 111 6 4 183 21 194 5.48e-13 69.7
MS.gene50501.t1 AT3G61350 29.255 188 111 6 4 183 21 194 5.48e-13 69.7
MS.gene50501.t1 AT2G21950 28.634 227 135 8 2 214 18 231 6.74e-13 69.3
MS.gene50501.t1 AT3G43710 27.426 237 147 7 5 231 26 247 6.85e-13 69.3
MS.gene50501.t1 AT3G46050 26.364 220 139 6 5 215 18 223 3.36e-12 67.4
MS.gene50501.t1 AT4G19330 24.797 246 153 7 8 238 34 262 8.07e-12 66.2
MS.gene50501.t1 AT4G29370 26.577 222 136 9 2 213 23 227 1.18e-11 65.9
MS.gene50501.t1 AT4G33900 27.895 190 126 4 8 188 15 202 2.58e-11 64.7

Find 98 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGGCCCACTGTTGGATTA+TGG 0.219380 7.3:-15898520 None:intergenic
TAGCTTTGGATGGAGGTAAA+AGG 0.268586 7.3:-15898178 None:intergenic
CACCTTATTGCAACAGCATC+AGG 0.322901 7.3:-15898141 None:intergenic
GGGGCCCACTGTTGGATTAT+GGG 0.332679 7.3:-15898519 None:intergenic
AGAATTGGGTTTGCAATGAT+TGG 0.336411 7.3:+15898948 MS.gene50501:CDS
AGGTCCAATGGCAGTAGTTC+AGG 0.344387 7.3:+15898836 MS.gene50501:CDS
TAGAGGTTGTCTCTCGTTCT+TGG 0.348117 7.3:+15898199 MS.gene50501:CDS
TTATCAGATGTTGATGTTCT+CGG 0.371892 7.3:+15899041 MS.gene50501:CDS
TACAGTTGCCATACGTTCTC+TGG 0.374253 7.3:-15898309 None:intergenic
ACCGTGTCATTGGAGCTATT+TGG 0.377305 7.3:-15899091 None:intergenic
TACATGATTGGAGGCGTCAT+TGG 0.386097 7.3:+15898987 MS.gene50501:CDS
GGTGATGATTTATACATGAT+TGG 0.397250 7.3:+15898975 MS.gene50501:CDS
GCTGGAAAGTTGTTTGTCAT+TGG 0.404038 7.3:+15898417 MS.gene50501:CDS
AGAACATCAACATCTGATAA+TGG 0.409101 7.3:-15899038 None:intergenic
TCCCTGATGCTGTTGCAATA+AGG 0.411155 7.3:+15898139 MS.gene50501:CDS
GATGTTGATGTTCTCGGACT+TGG 0.411384 7.3:+15899047 MS.gene50501:CDS
TAGACAATGCAGGGGCTAGA+TGG 0.415228 7.3:+15898787 MS.gene50501:CDS
ATAATGTCTGAACTGATTGA+AGG 0.416927 7.3:+15898114 None:intergenic
ACCAATCACTATTCCTGAAC+AGG 0.430627 7.3:-15898718 None:intergenic
CAACTTTCCAGCTGCGGATA+CGG 0.435951 7.3:-15898406 None:intergenic
TTGGACCTGACAGATGGAAC+TGG 0.437231 7.3:+15899006 MS.gene50501:CDS
ACAGCATGCAAACATAGAAC+GGG 0.441369 7.3:-15898562 None:intergenic
AATGGGAAAATTGTTGTCGC+TGG 0.444336 7.3:+15898591 MS.gene50501:CDS
ATGACCCTCTTAGAGATCTC+TGG 0.444585 7.3:+15898331 MS.gene50501:CDS
CGAGAGACAACCTCTAGCTT+TGG 0.447447 7.3:-15898192 None:intergenic
GTACCACGACACCGTGTCAT+TGG 0.449231 7.3:-15899101 None:intergenic
GCCTGTTCAGGAATAGTGAT+TGG 0.449318 7.3:+15898717 MS.gene50501:CDS
TGATAGTTCTGGGCTATGAA+TGG 0.452045 7.3:-15898229 None:intergenic
ACTCAAAATTCAGCCTGTTC+AGG 0.453864 7.3:+15898705 MS.gene50501:CDS
GAATTGGGTTTGCAATGATT+GGG 0.456529 7.3:+15898949 MS.gene50501:CDS
AATCCAACAGTGGGCCCCTC+GGG 0.459039 7.3:+15898524 MS.gene50501:CDS
AGCAAGGTGCCTGGTCTTTG+AGG 0.462553 7.3:-15898373 None:intergenic
ATGTCCCAGTTCCATCTGTC+AGG 0.465004 7.3:-15899011 None:intergenic
GAGGAGTGCGAGTGGCTTCA+AGG 0.467583 7.3:+15898816 MS.gene50501:CDS
ACCAGGCACCTTGCTCACTT+TGG 0.468091 7.3:+15898381 MS.gene50501:CDS
CGGTGTCGTGGTACCATTGT+TGG 0.476922 7.3:+15899110 MS.gene50501:CDS
CTGGTCTTTGAGGGAAGAAC+GGG 0.478632 7.3:-15898363 None:intergenic
TAATCCAACAGTGGGCCCCT+CGG 0.485586 7.3:+15898523 MS.gene50501:CDS
ATCATAAAGCAAGACAAAGA+AGG 0.487099 7.3:+15898888 MS.gene50501:CDS
AGCTTTGGATGGAGGTAAAA+GGG 0.491803 7.3:-15898177 None:intergenic
AAGCCCGAGGGGCCCACTGT+TGG 0.494183 7.3:-15898527 None:intergenic
ACCAAAGTGAGCAAGGTGCC+TGG 0.495529 7.3:-15898382 None:intergenic
TTTGGTGCCGTATCCGCAGC+TGG 0.498780 7.3:+15898399 MS.gene50501:CDS
GGAGTCCATACATCCTTCTC+AGG 0.502640 7.3:-15898663 None:intergenic
ATGGGAAAATTGTTGTCGCT+GGG 0.504570 7.3:+15898592 MS.gene50501:CDS
GCAAGGTGCCTGGTCTTTGA+GGG 0.508996 7.3:-15898372 None:intergenic
GCATCCTGAACTACTGCCAT+TGG 0.513611 7.3:-15898840 None:intergenic
CCGTTCTTCCCTCAAAGACC+AGG 0.521677 7.3:+15898364 MS.gene50501:CDS
GGAAAGTTGTTTGTCATTGG+CGG 0.525545 7.3:+15898420 MS.gene50501:CDS
GGGTTTGCAATGATTGGGCT+AGG 0.531249 7.3:+15898954 MS.gene50501:CDS
CACAGCATGCAAACATAGAA+CGG 0.534363 7.3:-15898563 None:intergenic
ACGATCCTGAGAAGGATGTA+TGG 0.540634 7.3:+15898658 MS.gene50501:CDS
GCACTTTGTGTTATGAGCAA+TGG 0.543239 7.3:+15898861 MS.gene50501:CDS
GGAGCTATTTGGCGCCAAGT+TGG 0.544319 7.3:-15899080 None:intergenic
CCATCGTGATCACCGGTTGA+AGG 0.546799 7.3:-15898462 None:intergenic
GGGAAAATTGTTGTCGCTGG+GGG 0.548900 7.3:+15898594 MS.gene50501:CDS
GATGATTTATACATGATTGG+AGG 0.550401 7.3:+15898978 MS.gene50501:CDS
GGGCCCACTGTTGGATTATG+GGG 0.555055 7.3:-15898518 None:intergenic
TCATAAAGCAAGACAAAGAA+GGG 0.555728 7.3:+15898889 MS.gene50501:CDS
GATGCTGTTGATCCTTCAAC+CGG 0.564507 7.3:+15898450 MS.gene50501:CDS
CTTTGAGGGAAGAACGGGAA+GGG 0.565020 7.3:-15898358 None:intergenic
CCTGGTCTTTGAGGGAAGAA+CGG 0.568560 7.3:-15898364 None:intergenic
GTGCGATGAAGATCAGGCAT+TGG 0.570847 7.3:-15898684 None:intergenic
AGACAACCTCTAGCTTTGGA+TGG 0.574344 7.3:-15898188 None:intergenic
GTAATCCAGAGATCTCTAAG+AGG 0.575936 7.3:-15898336 None:intergenic
GCCAAATAGCTCCAATGACA+CGG 0.582259 7.3:+15899090 MS.gene50501:CDS
TTACCTCCATCCAAAGCTAG+AGG 0.588537 7.3:+15898182 MS.gene50501:CDS
AAAACATCCATCGTGATCAC+CGG 0.589497 7.3:-15898469 None:intergenic
GCGTCATTGGACCTGACAGA+TGG 0.590626 7.3:+15899000 MS.gene50501:CDS
GGAACAAGCATTGAAGCCCG+AGG 0.593474 7.3:-15898540 None:intergenic
GAACAAGCATTGAAGCCCGA+GGG 0.596251 7.3:-15898539 None:intergenic
TGTTCAGGAATAGTGATTGG+TGG 0.597908 7.3:+15898720 MS.gene50501:CDS
CGAGTGGCTTCAAGGTCCAA+TGG 0.598467 7.3:+15898824 MS.gene50501:CDS
CAACCTCTAGCTTTGGATGG+AGG 0.602511 7.3:-15898185 None:intergenic
AAGTTGTTTGTCATTGGCGG+TGG 0.603362 7.3:+15898423 MS.gene50501:CDS
TGGACCTGACAGATGGAACT+GGG 0.607636 7.3:+15899007 MS.gene50501:CDS
ACAGGAGGTTGCTTCATCTG+AGG 0.609268 7.3:+15898260 MS.gene50501:CDS
GGTAAAAGGGAACGCGTGCA+AGG 0.612187 7.3:-15898164 None:intergenic
GTCATATGACCAGACTTCGT+CGG 0.615421 7.3:-15898496 None:intergenic
AGAAATGTACGATCCTGAGA+AGG 0.617500 7.3:+15898650 MS.gene50501:CDS
ACCTTATTGCAACAGCATCA+GGG 0.622347 7.3:-15898140 None:intergenic
ATACGGCACCAAAGTGAGCA+AGG 0.624375 7.3:-15898389 None:intergenic
TGGGAAAATTGTTGTCGCTG+GGG 0.627830 7.3:+15898593 MS.gene50501:CDS
TGACCCCATAATCCAACAGT+GGG 0.628215 7.3:+15898515 MS.gene50501:CDS
GATCAAAAGCACAGACACAC+AGG 0.628483 7.3:-15898287 None:intergenic
CCTTCAACCGGTGATCACGA+TGG 0.631950 7.3:+15898462 MS.gene50501:CDS
TAATCCAGAGATCTCTAAGA+GGG 0.633713 7.3:-15898335 None:intergenic
CATCAGTGTACAACCAACAA+TGG 0.634433 7.3:-15899123 None:intergenic
GCTCCAATGACACGGTGTCG+TGG 0.641084 7.3:+15899098 MS.gene50501:CDS
TTGGTAGTGAGAGACCAACT+TGG 0.641441 7.3:+15899066 MS.gene50501:CDS
AACAAGCATTGAAGCCCGAG+GGG 0.644286 7.3:-15898538 None:intergenic
GGATCGTCGAGGAGTGCGAG+TGG 0.648916 7.3:+15898808 MS.gene50501:CDS
GACAAACAACTTTCCAGCTG+CGG 0.655991 7.3:-15898412 None:intergenic
AAAGATGCATGTACTGCACA+AGG 0.662171 7.3:+15898743 MS.gene50501:CDS
ATGACCCCATAATCCAACAG+TGG 0.692852 7.3:+15898514 MS.gene50501:CDS
CAGCATGCAAACATAGAACG+GGG 0.697725 7.3:-15898561 None:intergenic
TCTTTGAGGGAAGAACGGGA+AGG 0.697994 7.3:-15898359 None:intergenic
AGGGGCTAGATGGATCGTCG+AGG 0.760201 7.3:+15898797 MS.gene50501:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAGATTTTAAAAAGAGAAT+TGG + chr7.3:15898933-15898952 MS.gene50501:CDS 20.0%
!!! CAGATTTTAAAAAGAGAATT+GGG + chr7.3:15898934-15898953 MS.gene50501:CDS 20.0%
AGAACATCAACATCTGATAA+TGG - chr7.3:15899041-15899060 None:intergenic 30.0%
AGAACTATCAAAAATTCGAC+AGG + chr7.3:15898242-15898261 MS.gene50501:CDS 30.0%
ATCATAAAGCAAGACAAAGA+AGG + chr7.3:15898888-15898907 MS.gene50501:CDS 30.0%
GATGATTTATACATGATTGG+AGG + chr7.3:15898978-15898997 MS.gene50501:CDS 30.0%
GGTGATGATTTATACATGAT+TGG + chr7.3:15898975-15898994 MS.gene50501:CDS 30.0%
TCATAAAGCAAGACAAAGAA+GGG + chr7.3:15898889-15898908 MS.gene50501:CDS 30.0%
TTATCAGATGTTGATGTTCT+CGG + chr7.3:15899041-15899060 MS.gene50501:CDS 30.0%
!! GTCGAATTTTTGATAGTTCT+GGG - chr7.3:15898242-15898261 None:intergenic 30.0%
!! TGTCGAATTTTTGATAGTTC+TGG - chr7.3:15898243-15898262 None:intergenic 30.0%
ACTATCAAAAATTCGACAGG+AGG + chr7.3:15898245-15898264 MS.gene50501:CDS 35.0%
AGAATTGGGTTTGCAATGAT+TGG + chr7.3:15898948-15898967 MS.gene50501:CDS 35.0%
GAATTGGGTTTGCAATGATT+GGG + chr7.3:15898949-15898968 MS.gene50501:CDS 35.0%
! TAATCCAGAGATCTCTAAGA+GGG - chr7.3:15898338-15898357 None:intergenic 35.0%
!! TTGCATGCTGTGTTTTGAAT+GGG + chr7.3:15898574-15898593 MS.gene50501:CDS 35.0%
!! TTTGCATGCTGTGTTTTGAA+TGG + chr7.3:15898573-15898592 MS.gene50501:CDS 35.0%
!!! TGCAAGTTTTAGACAATGCA+GGG + chr7.3:15898778-15898797 MS.gene50501:CDS 35.0%
AAAACATCCATCGTGATCAC+CGG - chr7.3:15898472-15898491 None:intergenic 40.0%
AAAGATGCATGTACTGCACA+AGG + chr7.3:15898743-15898762 MS.gene50501:CDS 40.0%
AATGGGAAAATTGTTGTCGC+TGG + chr7.3:15898591-15898610 MS.gene50501:CDS 40.0%
ACAGCATGCAAACATAGAAC+GGG - chr7.3:15898565-15898584 None:intergenic 40.0%
ACCAATCACTATTCCTGAAC+AGG - chr7.3:15898721-15898740 None:intergenic 40.0%
ACCTTATTGCAACAGCATCA+GGG - chr7.3:15898143-15898162 None:intergenic 40.0%
ACTCAAAATTCAGCCTGTTC+AGG + chr7.3:15898705-15898724 MS.gene50501:CDS 40.0%
AGAAATGTACGATCCTGAGA+AGG + chr7.3:15898650-15898669 MS.gene50501:CDS 40.0%
ATGGGAAAATTGTTGTCGCT+GGG + chr7.3:15898592-15898611 MS.gene50501:CDS 40.0%
CACAGCATGCAAACATAGAA+CGG - chr7.3:15898566-15898585 None:intergenic 40.0%
CATCAGTGTACAACCAACAA+TGG - chr7.3:15899126-15899145 None:intergenic 40.0%
GCACTTTGTGTTATGAGCAA+TGG + chr7.3:15898861-15898880 MS.gene50501:CDS 40.0%
GCTGGAAAGTTGTTTGTCAT+TGG + chr7.3:15898417-15898436 MS.gene50501:CDS 40.0%
GGAAAGTTGTTTGTCATTGG+CGG + chr7.3:15898420-15898439 MS.gene50501:CDS 40.0%
GTAATCCAGAGATCTCTAAG+AGG - chr7.3:15898339-15898358 None:intergenic 40.0%
TGTTCAGGAATAGTGATTGG+TGG + chr7.3:15898720-15898739 MS.gene50501:CDS 40.0%
! CTTTTGATCCAGAGAACGTA+TGG + chr7.3:15898301-15898320 MS.gene50501:CDS 40.0%
!! AGCTTTGGATGGAGGTAAAA+GGG - chr7.3:15898180-15898199 None:intergenic 40.0%
!! TAGCTTTGGATGGAGGTAAA+AGG - chr7.3:15898181-15898200 None:intergenic 40.0%
!! TGATAGTTCTGGGCTATGAA+TGG - chr7.3:15898232-15898251 None:intergenic 40.0%
!! TTTTGAGTGCGATGAAGATC+AGG - chr7.3:15898693-15898712 None:intergenic 40.0%
!!! GCAAGTTTTAGACAATGCAG+GGG + chr7.3:15898779-15898798 MS.gene50501:CDS 40.0%
!!! GTGCAAGTTTTAGACAATGC+AGG + chr7.3:15898777-15898796 MS.gene50501:CDS 40.0%
AAGTTGTTTGTCATTGGCGG+TGG + chr7.3:15898423-15898442 MS.gene50501:CDS 45.0%
ACGATCCTGAGAAGGATGTA+TGG + chr7.3:15898658-15898677 MS.gene50501:CDS 45.0%
ATGACCCCATAATCCAACAG+TGG + chr7.3:15898514-15898533 MS.gene50501:CDS 45.0%
ATGACCCTCTTAGAGATCTC+TGG + chr7.3:15898331-15898350 MS.gene50501:CDS 45.0%
CACCTTATTGCAACAGCATC+AGG - chr7.3:15898144-15898163 None:intergenic 45.0%
CAGCATGCAAACATAGAACG+GGG - chr7.3:15898564-15898583 None:intergenic 45.0%
GACAAACAACTTTCCAGCTG+CGG - chr7.3:15898415-15898434 None:intergenic 45.0%
GATGCTGTTGATCCTTCAAC+CGG + chr7.3:15898450-15898469 MS.gene50501:CDS 45.0%
GATGTTGATGTTCTCGGACT+TGG + chr7.3:15899047-15899066 MS.gene50501:CDS 45.0%
GCCAAATAGCTCCAATGACA+CGG + chr7.3:15899090-15899109 MS.gene50501:CDS 45.0%
GCCTGTTCAGGAATAGTGAT+TGG + chr7.3:15898717-15898736 MS.gene50501:CDS 45.0%
GTCATATGACCAGACTTCGT+CGG - chr7.3:15898499-15898518 None:intergenic 45.0%
TACAGTTGCCATACGTTCTC+TGG - chr7.3:15898312-15898331 None:intergenic 45.0%
TAGAGGTTGTCTCTCGTTCT+TGG + chr7.3:15898199-15898218 MS.gene50501:CDS 45.0%
TCCCTGATGCTGTTGCAATA+AGG + chr7.3:15898139-15898158 MS.gene50501:CDS 45.0%
TGACCCCATAATCCAACAGT+GGG + chr7.3:15898515-15898534 MS.gene50501:CDS 45.0%
TGGGAAAATTGTTGTCGCTG+GGG + chr7.3:15898593-15898612 MS.gene50501:CDS 45.0%
TTACCTCCATCCAAAGCTAG+AGG + chr7.3:15898182-15898201 MS.gene50501:CDS 45.0%
! ACCGTGTCATTGGAGCTATT+TGG - chr7.3:15899094-15899113 None:intergenic 45.0%
! GATCAAAAGCACAGACACAC+AGG - chr7.3:15898290-15898309 None:intergenic 45.0%
!! AGACAACCTCTAGCTTTGGA+TGG - chr7.3:15898191-15898210 None:intergenic 45.0%
!! TACATGATTGGAGGCGTCAT+TGG + chr7.3:15898987-15899006 MS.gene50501:CDS 45.0%
!! TTGGTAGTGAGAGACCAACT+TGG + chr7.3:15899066-15899085 MS.gene50501:CDS 45.0%
ACAGGAGGTTGCTTCATCTG+AGG + chr7.3:15898260-15898279 MS.gene50501:CDS 50.0%
AGGTCCAATGGCAGTAGTTC+AGG + chr7.3:15898836-15898855 MS.gene50501:CDS 50.0%
ATACGGCACCAAAGTGAGCA+AGG - chr7.3:15898392-15898411 None:intergenic 50.0%
ATGTCCCAGTTCCATCTGTC+AGG - chr7.3:15899014-15899033 None:intergenic 50.0%
CAACTTTCCAGCTGCGGATA+CGG - chr7.3:15898409-15898428 None:intergenic 50.0%
GCATCCTGAACTACTGCCAT+TGG - chr7.3:15898843-15898862 None:intergenic 50.0%
GGAGTCCATACATCCTTCTC+AGG - chr7.3:15898666-15898685 None:intergenic 50.0%
GGGAAAATTGTTGTCGCTGG+GGG + chr7.3:15898594-15898613 MS.gene50501:CDS 50.0%
GGGTTTGCAATGATTGGGCT+AGG + chr7.3:15898954-15898973 MS.gene50501:CDS 50.0%
GTGCGATGAAGATCAGGCAT+TGG - chr7.3:15898687-15898706 None:intergenic 50.0%
TAGACAATGCAGGGGCTAGA+TGG + chr7.3:15898787-15898806 MS.gene50501:CDS 50.0%
TGGACCTGACAGATGGAACT+GGG + chr7.3:15899007-15899026 MS.gene50501:CDS 50.0%
TTGGACCTGACAGATGGAAC+TGG + chr7.3:15899006-15899025 MS.gene50501:CDS 50.0%
! CCTGGTCTTTGAGGGAAGAA+CGG - chr7.3:15898367-15898386 None:intergenic 50.0%
! CGAGAGACAACCTCTAGCTT+TGG - chr7.3:15898195-15898214 None:intergenic 50.0%
! CTGGTCTTTGAGGGAAGAAC+GGG - chr7.3:15898366-15898385 None:intergenic 50.0%
! CTTTGAGGGAAGAACGGGAA+GGG - chr7.3:15898361-15898380 None:intergenic 50.0%
! GTTTTGCAACCGACGAAGTC+TGG + chr7.3:15898487-15898506 MS.gene50501:CDS 50.0%
! TCTTTGAGGGAAGAACGGGA+AGG - chr7.3:15898362-15898381 None:intergenic 50.0%
!! AACAAGCATTGAAGCCCGAG+GGG - chr7.3:15898541-15898560 None:intergenic 50.0%
!! CAACCTCTAGCTTTGGATGG+AGG - chr7.3:15898188-15898207 None:intergenic 50.0%
!! GAACAAGCATTGAAGCCCGA+GGG - chr7.3:15898542-15898561 None:intergenic 50.0%
ACCAGGCACCTTGCTCACTT+TGG + chr7.3:15898381-15898400 MS.gene50501:CDS 55.0%
AGGGGCCCACTGTTGGATTA+TGG - chr7.3:15898523-15898542 None:intergenic 55.0%
CCGTTCTTCCCTCAAAGACC+AGG + chr7.3:15898364-15898383 MS.gene50501:CDS 55.0%
CCTTCAACCGGTGATCACGA+TGG + chr7.3:15898462-15898481 MS.gene50501:CDS 55.0%
CGAGTGGCTTCAAGGTCCAA+TGG + chr7.3:15898824-15898843 MS.gene50501:CDS 55.0%
GCGTCATTGGACCTGACAGA+TGG + chr7.3:15899000-15899019 MS.gene50501:CDS 55.0%
GGAGCTATTTGGCGCCAAGT+TGG - chr7.3:15899083-15899102 None:intergenic 55.0%
GGGCCCACTGTTGGATTATG+GGG - chr7.3:15898521-15898540 None:intergenic 55.0%
GGGGCCCACTGTTGGATTAT+GGG - chr7.3:15898522-15898541 None:intergenic 55.0%
GGTAAAAGGGAACGCGTGCA+AGG - chr7.3:15898167-15898186 None:intergenic 55.0%
GTACCACGACACCGTGTCAT+TGG - chr7.3:15899104-15899123 None:intergenic 55.0%
TAATCCAACAGTGGGCCCCT+CGG + chr7.3:15898523-15898542 MS.gene50501:CDS 55.0%
! ACCAAAGTGAGCAAGGTGCC+TGG - chr7.3:15898385-15898404 None:intergenic 55.0%
! AGCAAGGTGCCTGGTCTTTG+AGG - chr7.3:15898376-15898395 None:intergenic 55.0%
! CCATCGTGATCACCGGTTGA+AGG - chr7.3:15898465-15898484 None:intergenic 55.0%
! GCAAGGTGCCTGGTCTTTGA+GGG - chr7.3:15898375-15898394 None:intergenic 55.0%
!! CGGTGTCGTGGTACCATTGT+TGG + chr7.3:15899110-15899129 MS.gene50501:CDS 55.0%
!! GGAACAAGCATTGAAGCCCG+AGG - chr7.3:15898543-15898562 None:intergenic 55.0%
AATCCAACAGTGGGCCCCTC+GGG + chr7.3:15898524-15898543 MS.gene50501:CDS 60.0%
AGGGGCTAGATGGATCGTCG+AGG + chr7.3:15898797-15898816 MS.gene50501:CDS 60.0%
! GAGGAGTGCGAGTGGCTTCA+AGG + chr7.3:15898816-15898835 MS.gene50501:CDS 60.0%
! GCTCCAATGACACGGTGTCG+TGG + chr7.3:15899098-15899117 MS.gene50501:CDS 60.0%
!! TTTGGTGCCGTATCCGCAGC+TGG + chr7.3:15898399-15898418 MS.gene50501:CDS 60.0%
! GGATCGTCGAGGAGTGCGAG+TGG + chr7.3:15898808-15898827 MS.gene50501:CDS 65.0%
AAGCCCGAGGGGCCCACTGT+TGG - chr7.3:15898530-15898549 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 15898117 15899154 15898117 ID=MS.gene50501
chr7.3 mRNA 15898117 15899154 15898117 ID=MS.gene50501.t1;Parent=MS.gene50501
chr7.3 exon 15898117 15899154 15898117 ID=MS.gene50501.t1.exon1;Parent=MS.gene50501.t1
chr7.3 CDS 15898117 15899154 15898117 ID=cds.MS.gene50501.t1;Parent=MS.gene50501.t1
Gene Sequence

>MS.gene50501

ATGTCTGAACTGATTGAAGGACTCCCTGATGCTGTTGCAATAAGGTGCCTTGCACGCGTTCCCTTTTACCTCCATCCAAAGCTAGAGGTTGTCTCTCGTTCTTGGCAAGCAGCCATTCATAGCCCAGAACTATCAAAAATTCGACAGGAGGTTGCTTCATCTGAGGATCTCCTGTGTGTCTGTGCTTTTGATCCAGAGAACGTATGGCAACTGTATGACCCTCTTAGAGATCTCTGGATTACCCTTCCCGTTCTTCCCTCAAAGACCAGGCACCTTGCTCACTTTGGTGCCGTATCCGCAGCTGGAAAGTTGTTTGTCATTGGCGGTGGAAGTGATGCTGTTGATCCTTCAACCGGTGATCACGATGGATGTTTTGCAACCGACGAAGTCTGGTCATATGACCCCATAATCCAACAGTGGGCCCCTCGGGCTTCAATGCTTGTTCCCCGTTCTATGTTTGCATGCTGTGTTTTGAATGGGAAAATTGTTGTCGCTGGGGGCTTCACTAGCTGTAGAAAAACAATCTCTCAAGCAGAAATGTACGATCCTGAGAAGGATGTATGGACTCCAATGCCTGATCTTCATCGCACTCAAAATTCAGCCTGTTCAGGAATAGTGATTGGTGGAAAGATGCATGTACTGCACAAGGATATGTCAACAGTGCAAGTTTTAGACAATGCAGGGGCTAGATGGATCGTCGAGGAGTGCGAGTGGCTTCAAGGTCCAATGGCAGTAGTTCAGGATGCACTTTGTGTTATGAGCAATGGATCTATCATAAAGCAAGACAAAGAAGGGAGAAAGATTGTAAGTTCAGCAACAGATTTTAAAAAGAGAATTGGGTTTGCAATGATTGGGCTAGGTGATGATTTATACATGATTGGAGGCGTCATTGGACCTGACAGATGGAACTGGGACATTAAGCCATTATCAGATGTTGATGTTCTCGGACTTGGTAGTGAGAGACCAACTTGGCGCCAAATAGCTCCAATGACACGGTGTCGTGGTACCATTGTTGGTTGTACACTGATGAGAATTTAA
Protein sequence

>MS.gene50501.t1

MSELIEGLPDAVAIRCLARVPFYLHPKLEVVSRSWQAAIHSPELSKIRQEVASSEDLLCVCAFDPENVWQLYDPLRDLWITLPVLPSKTRHLAHFGAVSAAGKLFVIGGGSDAVDPSTGDHDGCFATDEVWSYDPIIQQWAPRASMLVPRSMFACCVLNGKIVVAGGFTSCRKTISQAEMYDPEKDVWTPMPDLHRTQNSACSGIVIGGKMHVLHKDMSTVQVLDNAGARWIVEECEWLQGPMAVVQDALCVMSNGSIIKQDKEGRKIVSSATDFKKRIGFAMIGLGDDLYMIGGVIGPDRWNWDIKPLSDVDVLGLGSERPTWRQIAPMTRCRGTIVGCTLMRI