AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50627

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50627.t1 MTR_1g070000 90.541 222 21 0 1 222 1 222 3.52e-152 422
MS.gene50627.t1 MTR_1g070015 91.071 224 19 1 1 224 1 223 4.41e-150 416
MS.gene50627.t1 MTR_1g069985 77.273 220 35 5 8 222 4 213 1.84e-115 328
MS.gene50627.t1 MTR_1g070035 75.115 217 46 6 9 221 5 217 2.21e-105 303
MS.gene50627.t1 MTR_1g070020 70.833 216 42 5 3 214 2 200 1.61e-101 293
MS.gene50627.t1 MTR_1g070045 67.045 176 36 5 7 178 3 160 3.43e-73 219
MS.gene50627.t1 MTR_4g054740 41.315 213 90 6 34 215 30 238 5.71e-44 147
MS.gene50627.t1 MTR_1g074370 47.486 179 81 3 50 216 29 206 3.52e-42 142
MS.gene50627.t1 MTR_4g054360 46.667 165 71 5 63 215 108 267 1.97e-41 142
MS.gene50627.t1 MTR_4g054860 49.306 144 59 4 86 215 133 276 1.21e-40 140
MS.gene50627.t1 MTR_1g069940 51.205 166 69 3 65 218 72 237 6.29e-40 137
MS.gene50627.t1 MTR_1g069945 50.920 163 68 3 65 215 78 240 1.94e-39 136
MS.gene50627.t1 MTR_1g043350 48.370 184 76 4 50 219 38 216 1.15e-38 133
MS.gene50627.t1 MTR_7g096830 39.834 241 107 7 7 215 5 239 3.42e-38 133
MS.gene50627.t1 MTR_7g096780 51.220 164 69 3 56 212 57 216 1.89e-37 130
MS.gene50627.t1 MTR_2g015040 59.494 79 32 0 76 154 55 133 8.36e-30 108
MS.gene50627.t1 MTR_4g088005 46.847 111 48 2 41 140 3 113 2.71e-29 106
MS.gene50627.t1 MTR_1g090290 43.506 154 64 5 8 143 24 172 2.02e-28 106
MS.gene50627.t1 MTR_2g015050 37.791 172 91 4 57 213 104 274 4.81e-28 107
MS.gene50627.t1 MTR_1g048610 49.057 106 45 2 51 156 65 161 2.46e-26 102
MS.gene50627.t1 MTR_8g006815 73.684 57 15 0 84 140 96 152 2.31e-25 98.6
MS.gene50627.t1 MTR_4g100380 48.148 108 48 3 44 143 97 204 4.62e-25 99.4
MS.gene50627.t1 MTR_7g096700 60.811 74 28 1 67 140 4 76 6.69e-25 95.9
MS.gene50627.t1 MTR_7g021010 52.874 87 38 2 60 146 29 112 8.30e-25 96.7
MS.gene50627.t1 MTR_7g096750 65.079 63 22 0 78 140 14 76 1.29e-24 94.7
MS.gene50627.t1 MTR_1g074310 62.500 64 24 0 77 140 14 77 3.13e-24 94.0
MS.gene50627.t1 MTR_8g006840 60.870 69 27 0 72 140 113 181 3.17e-24 95.5
MS.gene50627.t1 MTR_4g134870 49.600 125 25 3 100 224 331 417 4.90e-24 99.0
MS.gene50627.t1 MTR_1g070070 71.930 57 16 0 84 140 21 77 6.32e-24 93.2
MS.gene50627.t1 MTR_4g100420 55.405 74 33 0 70 143 143 216 6.34e-24 97.4
MS.gene50627.t1 MTR_7g021010 59.211 76 28 2 71 146 1 73 6.49e-24 93.2
MS.gene50627.t1 MTR_7g020980 52.874 87 38 2 60 146 29 112 9.64e-24 93.6
MS.gene50627.t1 MTR_1g074230 70.175 57 17 0 84 140 19 75 1.41e-23 92.0
MS.gene50627.t1 MTR_7g081805 49.541 109 42 4 35 140 19 117 1.50e-23 94.0
MS.gene50627.t1 MTR_1g040430 45.082 122 63 2 25 143 50 170 2.83e-23 93.2
MS.gene50627.t1 MTR_4g100450 62.500 64 24 0 80 143 150 213 4.88e-23 94.7
MS.gene50627.t1 MTR_7g081815 68.421 57 18 0 84 140 61 117 1.19e-22 91.7
MS.gene50627.t1 MTR_7g081795 64.912 57 20 0 84 140 60 116 1.95e-21 88.6
MS.gene50627.t1 MTR_8g006825 50.602 83 30 1 84 155 96 178 2.24e-21 88.6
MS.gene50627.t1 MTR_2g438180 59.091 66 27 0 75 140 5 70 4.38e-21 85.5
MS.gene50627.t1 MTR_1g074250 65.574 61 20 1 84 143 19 79 4.52e-21 85.5
MS.gene50627.t1 MTR_4g119270 60.938 64 24 1 77 140 46 108 1.09e-20 89.0
MS.gene50627.t1 MTR_1g087920 42.017 119 61 2 22 140 22 132 1.57e-20 88.2
MS.gene50627.t1 MTR_8g092460 62.319 69 23 2 74 140 133 200 3.51e-20 87.0
MS.gene50627.t1 MTR_4g086165 46.667 105 47 3 80 184 78 173 5.38e-20 84.7
MS.gene50627.t1 MTR_4g086160 60.000 70 25 2 84 153 96 162 5.55e-20 85.1
MS.gene50627.t1 MTR_2g014300 57.746 71 29 1 79 149 10 79 1.25e-19 82.8
MS.gene50627.t1 MTR_4g086190 62.319 69 23 2 84 152 96 161 1.53e-19 84.0
MS.gene50627.t1 MTR_5g009620 61.290 62 23 1 84 145 112 172 1.95e-19 85.1
MS.gene50627.t1 MTR_8g022820 54.217 83 30 2 65 140 97 178 5.37e-19 84.7
MS.gene50627.t1 MTR_8g022820 54.217 83 30 2 65 140 98 179 5.57e-19 84.7
MS.gene50627.t1 MTR_8g022820 54.217 83 30 2 65 140 98 179 5.57e-19 84.7
MS.gene50627.t1 MTR_8g069360 68.421 57 17 1 84 140 44 99 6.97e-19 84.7
MS.gene50627.t1 MTR_2g019750 56.250 64 27 1 77 140 43 105 7.15e-19 83.6
MS.gene50627.t1 MTR_1g069960 70.175 57 17 0 84 140 27 83 7.61e-19 80.1
MS.gene50627.t1 MTR_2g078680 64.407 59 20 1 84 142 31 88 8.53e-19 81.6
MS.gene50627.t1 MTR_7g084370 66.667 57 18 1 84 140 42 97 1.05e-18 82.8
MS.gene50627.t1 MTR_5g085070 51.948 77 35 2 66 142 34 108 1.15e-18 82.8
MS.gene50627.t1 MTR_3g053690 55.714 70 30 1 74 143 17 85 1.17e-18 81.6
MS.gene50627.t1 MTR_5g075570 51.316 76 35 2 80 155 120 193 1.74e-18 82.0
MS.gene50627.t1 MTR_2g435590 60.000 65 25 1 77 141 89 152 1.77e-18 81.6
MS.gene50627.t1 MTR_4g086220 60.294 68 24 2 84 151 96 160 1.83e-18 81.3
MS.gene50627.t1 MTR_4g078710 45.872 109 52 4 74 180 18 121 1.86e-18 80.9
MS.gene50627.t1 MTR_3g090760 54.545 66 29 1 84 149 113 177 2.04e-18 82.8
MS.gene50627.t1 MTR_7g096810 65.000 60 21 0 81 140 10 69 2.32e-18 78.2
MS.gene50627.t1 MTR_5g085100 43.617 94 45 2 56 142 11 103 2.34e-18 81.6
MS.gene50627.t1 MTR_2g090235 66.667 57 18 1 84 140 218 273 2.52e-18 83.2
MS.gene50627.t1 MTR_2g105380 52.632 76 35 1 65 140 98 172 4.03e-18 82.0
MS.gene50627.t1 MTR_1g028560 62.712 59 19 2 84 141 115 171 6.05e-18 81.3
MS.gene50627.t1 MTR_2g014340 54.667 75 32 2 68 141 2 75 8.70e-18 78.6
MS.gene50627.t1 MTR_5g032820 48.958 96 39 3 49 140 12 101 9.56e-18 80.9
MS.gene50627.t1 MTR_4g111915 52.778 72 32 2 69 140 39 108 2.43e-17 75.9
MS.gene50627.t1 MTR_8g085960 53.846 65 29 1 78 142 19 82 4.68e-17 77.4
MS.gene50627.t1 MTR_6g029180 37.589 141 61 6 51 191 3 116 5.02e-17 78.6
MS.gene50627.t1 MTR_8g099215 59.649 57 22 1 84 140 107 162 5.07e-17 78.6
MS.gene50627.t1 MTR_4g112490 52.778 72 32 2 69 140 39 108 9.44e-17 75.9
MS.gene50627.t1 MTR_1g090170 61.404 57 21 1 84 140 239 294 1.07e-16 78.2
MS.gene50627.t1 MTR_1g090170 61.404 57 21 1 84 140 152 207 1.11e-16 77.4
MS.gene50627.t1 MTR_3g074130 61.404 57 21 1 84 140 150 205 1.23e-16 77.8
MS.gene50627.t1 MTR_5g062700 61.404 57 21 1 84 140 173 228 2.28e-16 77.0
MS.gene50627.t1 MTR_7g011630 48.684 76 36 2 67 140 23 97 2.59e-16 77.4
MS.gene50627.t1 MTR_4g114570 51.429 70 33 1 78 147 1 69 4.39e-16 74.3
MS.gene50627.t1 MTR_0939s0010 56.452 62 26 1 79 140 60 120 4.50e-16 73.9
MS.gene50627.t1 MTR_6g012970 40.385 104 47 3 81 183 35 124 4.56e-16 76.6
MS.gene50627.t1 MTR_8g090350 50.725 69 33 1 84 152 113 180 5.22e-16 75.5
MS.gene50627.t1 MTR_5g008540 48.611 72 34 2 82 151 22 92 7.49e-16 70.9
MS.gene50627.t1 MTR_1g097190 45.783 83 41 3 71 150 8 89 9.08e-16 71.6
MS.gene50627.t1 MTR_5g083340 52.000 75 35 1 81 155 82 155 9.17e-16 75.5
MS.gene50627.t1 MTR_2g089170 54.839 62 27 1 79 140 60 120 1.35e-15 72.4
MS.gene50627.t1 MTR_7g085810 50.000 66 32 1 75 140 21 85 3.99e-15 72.4
MS.gene50627.t1 MTR_4g035430 46.429 84 42 2 82 163 30 112 7.34e-15 71.2
MS.gene50627.t1 MTR_8g102800 44.444 81 41 2 63 140 13 92 8.20e-15 71.2
MS.gene50627.t1 MTR_8g013860 50.000 62 30 1 80 141 43 103 8.76e-15 70.5
MS.gene50627.t1 MTR_2g103700 50.769 65 31 1 78 142 1 64 1.06e-14 69.7
MS.gene50627.t1 MTR_2g101340 44.928 69 37 1 72 140 29 96 1.15e-14 70.5
MS.gene50627.t1 MTR_2g016730 55.932 59 25 1 84 142 23 80 1.27e-14 72.0
MS.gene50627.t1 MTR_4g010640 52.308 65 30 1 78 142 1 64 1.30e-14 70.5
MS.gene50627.t1 MTR_8g032610 52.542 59 27 1 84 142 27 84 2.12e-14 71.2
MS.gene50627.t1 MTR_2g043050 50.000 70 34 1 71 140 6 74 2.43e-14 69.7
MS.gene50627.t1 MTR_7g070220 53.125 64 24 1 83 140 77 140 3.05e-14 71.6
MS.gene50627.t1 MTR_4g082345 53.333 60 27 1 81 140 45 103 4.56e-14 70.1
MS.gene50627.t1 MTR_8g006410 43.902 82 39 3 70 149 42 118 6.72e-14 68.2
MS.gene50627.t1 MTR_7g046260 46.667 75 36 2 66 140 46 116 8.02e-14 68.6
MS.gene50627.t1 MTR_5g008470 35.294 102 65 1 39 140 30 130 1.63e-13 66.6
MS.gene50627.t1 MTR_5g083330 50.000 76 33 2 80 151 31 105 1.75e-13 68.6
MS.gene50627.t1 MTR_6g088405 52.632 57 26 1 84 140 44 99 1.95e-13 67.4
MS.gene50627.t1 MTR_2g043030 54.237 59 26 1 82 140 17 74 2.18e-13 67.0
MS.gene50627.t1 MTR_3g110205 52.632 57 26 1 84 140 43 98 2.89e-13 66.2
MS.gene50627.t1 MTR_5g082950 53.226 62 28 1 79 140 61 121 3.06e-13 68.2
MS.gene50627.t1 MTR_7g092190 52.632 57 26 1 84 140 30 85 3.70e-13 67.4
MS.gene50627.t1 MTR_1g014800 46.269 67 33 2 74 140 23 86 4.72e-13 66.2
MS.gene50627.t1 MTR_3g102100 44.118 68 37 1 73 140 34 100 5.46e-13 65.1
MS.gene50627.t1 MTR_8g027465 51.724 58 27 1 84 141 39 95 6.70e-13 65.1
MS.gene50627.t1 MTR_3g106290 54.386 57 25 1 84 140 8 63 1.05e-12 64.7
MS.gene50627.t1 MTR_7g117690 50.877 57 27 1 84 140 28 83 1.77e-12 63.5
MS.gene50627.t1 MTR_5g085125 55.932 59 25 1 84 142 16 73 1.77e-12 63.5
MS.gene50627.t1 MTR_1g014780 35.043 117 58 3 73 173 28 142 2.25e-12 64.7
MS.gene50627.t1 MTR_2g043040 52.542 59 27 1 82 140 17 74 3.18e-12 63.9
MS.gene50627.t1 MTR_1g014860 46.970 66 29 2 75 140 18 77 3.34e-12 63.9
MS.gene50627.t1 MTR_3g105510 47.059 68 33 2 73 140 28 92 3.42e-12 64.3
MS.gene50627.t1 MTR_3g095190 62.903 62 22 1 79 140 165 225 4.06e-12 65.1
MS.gene50627.t1 MTR_4g100650 50.000 58 28 1 83 140 73 129 4.36e-12 63.9
MS.gene50627.t1 MTR_4g008860 54.386 57 25 1 84 140 8 63 4.74e-12 63.2
MS.gene50627.t1 MTR_1g014820 49.123 57 28 1 84 140 27 82 6.25e-12 63.5
MS.gene50627.t1 MTR_5g012910 44.118 68 37 1 73 140 17 83 6.26e-12 62.4
MS.gene50627.t1 MTR_1g019110 49.123 57 28 1 84 140 44 99 1.12e-11 61.6
MS.gene50627.t1 MTR_1g101600 50.000 58 28 1 84 141 41 97 1.21e-11 62.0
MS.gene50627.t1 MTR_2g043020 50.847 59 28 1 82 140 17 74 1.55e-11 61.6
MS.gene50627.t1 MTR_6g466130 37.363 91 52 2 51 141 37 122 1.72e-11 62.0
MS.gene50627.t1 MTR_5g016750 46.032 63 33 1 78 140 19 80 1.80e-11 61.2
MS.gene50627.t1 MTR_8g010340 63.043 46 16 1 95 140 118 162 2.26e-11 62.4
MS.gene50627.t1 MTR_3g098580 59.016 61 24 1 80 140 72 131 3.66e-11 61.6
MS.gene50627.t1 MTR_6g033255 61.905 63 23 1 79 141 15 76 3.73e-11 60.8
MS.gene50627.t1 MTR_3g105480 50.909 55 26 1 86 140 33 86 4.59e-11 60.8
MS.gene50627.t1 MTR_8g023680 61.364 44 16 1 82 125 114 156 4.73e-11 62.0
MS.gene50627.t1 MTR_4g102670 46.774 62 31 2 80 141 11 70 6.62e-11 59.3
MS.gene50627.t1 MTR_1g074280 54.386 57 26 0 84 140 17 73 8.64e-11 57.8
MS.gene50627.t1 MTR_4g009260 52.747 91 33 4 56 145 56 137 9.29e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50627.t1 AT3G23240 57.746 142 51 2 83 220 81 217 1.11e-51 167
MS.gene50627.t1 AT2G31230 46.012 163 63 3 78 215 80 242 1.37e-39 136
MS.gene50627.t1 AT1G06160 43.750 160 60 2 83 212 81 240 2.50e-29 110
MS.gene50627.t1 AT5G47220 46.154 117 60 2 29 143 61 176 5.39e-27 103
MS.gene50627.t1 AT5G43410 70.492 61 18 0 80 140 11 71 3.92e-26 98.6
MS.gene50627.t1 AT4G17500 70.000 60 18 0 84 143 148 207 5.48e-25 99.4
MS.gene50627.t1 AT5G51190 46.364 110 55 2 34 143 26 131 6.00e-25 98.2
MS.gene50627.t1 AT3G23230 62.903 62 23 0 79 140 15 76 1.40e-24 94.7
MS.gene50627.t1 AT5G47230 61.538 65 25 0 79 143 151 215 7.96e-24 97.1
MS.gene50627.t1 AT4G17490 61.538 65 25 0 79 143 132 196 3.90e-23 94.7
MS.gene50627.t1 AT2G44840 66.667 57 19 0 84 140 92 148 6.55e-23 92.8
MS.gene50627.t1 AT5G61600 64.407 59 21 0 84 142 88 146 9.14e-23 92.8
MS.gene50627.t1 AT2G33710 61.429 70 25 2 71 140 58 125 1.43e-22 91.7
MS.gene50627.t1 AT2G33710 61.429 70 25 2 71 140 58 125 1.45e-22 92.0
MS.gene50627.t1 AT2G47520 49.495 99 46 2 52 147 15 112 1.50e-22 90.5
MS.gene50627.t1 AT4G18450 58.108 74 27 2 84 156 110 180 2.91e-22 92.8
MS.gene50627.t1 AT5G07580 66.102 59 20 0 84 142 110 168 4.19e-22 90.5
MS.gene50627.t1 AT4G27950 58.824 68 27 1 84 151 118 184 1.35e-21 91.3
MS.gene50627.t1 AT3G16770 43.925 107 50 3 34 140 38 134 2.12e-21 89.4
MS.gene50627.t1 AT4G11140 55.405 74 32 1 84 157 87 159 4.28e-21 89.4
MS.gene50627.t1 AT5G13910 68.421 57 17 1 84 140 20 75 2.25e-20 85.9
MS.gene50627.t1 AT5G13330 54.054 74 32 2 73 146 28 99 2.34e-20 85.9
MS.gene50627.t1 AT5G18560 60.000 65 25 1 76 140 47 110 3.46e-20 87.8
MS.gene50627.t1 AT3G23220 77.193 57 13 0 84 140 14 70 1.82e-19 81.6
MS.gene50627.t1 AT5G61890 60.656 61 23 1 80 140 86 145 3.65e-19 83.6
MS.gene50627.t1 AT1G28160 66.667 57 18 1 84 140 39 94 3.66e-19 83.2
MS.gene50627.t1 AT3G20310 55.263 76 32 2 80 154 23 97 4.95e-19 82.8
MS.gene50627.t1 AT1G22190 55.714 70 30 1 84 153 83 151 8.41e-19 82.8
MS.gene50627.t1 AT1G04370 70.492 61 18 0 80 140 16 76 9.70e-19 79.3
MS.gene50627.t1 AT5G44210 58.209 67 27 1 76 142 25 90 1.01e-18 81.3
MS.gene50627.t1 AT5G53290 57.143 63 26 1 80 142 121 182 1.05e-18 83.6
MS.gene50627.t1 AT1G36060 60.317 63 24 1 84 146 143 204 1.55e-18 82.8
MS.gene50627.t1 AT1G72360 59.375 64 25 1 77 140 18 80 2.12e-18 80.5
MS.gene50627.t1 AT1G28360 60.000 65 25 1 76 140 4 67 2.83e-18 79.7
MS.gene50627.t1 AT3G15210 64.407 59 20 1 84 142 25 82 3.34e-18 80.5
MS.gene50627.t1 AT1G72360 51.948 77 36 1 64 140 54 129 3.43e-18 80.9
MS.gene50627.t1 AT4G23750 44.444 90 49 1 53 142 91 179 3.88e-18 82.0
MS.gene50627.t1 AT4G23750 44.444 90 49 1 53 142 91 179 3.88e-18 82.0
MS.gene50627.t1 AT1G50640 52.113 71 33 1 84 154 28 97 4.42e-18 80.1
MS.gene50627.t1 AT1G72360 48.276 87 42 2 54 140 48 131 5.21e-18 80.5
MS.gene50627.t1 AT2G22200 61.667 60 22 1 81 140 68 126 5.75e-18 80.5
MS.gene50627.t1 AT1G12890 39.496 119 63 3 80 192 17 132 7.00e-18 79.3
MS.gene50627.t1 AT1G03800 57.627 59 24 1 84 142 53 110 1.11e-17 79.3
MS.gene50627.t1 AT4G28140 59.091 66 25 2 84 148 143 207 1.21e-17 80.1
MS.gene50627.t1 AT1G78080 47.253 91 44 3 56 144 123 211 1.66e-17 80.1
MS.gene50627.t1 AT3G61630 59.649 57 22 1 84 140 105 160 1.81e-17 79.7
MS.gene50627.t1 AT1G24590 66.667 57 18 1 84 140 58 113 1.88e-17 79.7
MS.gene50627.t1 AT1G28370 58.065 62 25 1 84 145 20 80 1.99e-17 77.0
MS.gene50627.t1 AT1G28370 58.065 62 25 1 84 145 58 118 1.99e-17 77.8
MS.gene50627.t1 AT5G65130 61.404 57 21 1 84 140 111 166 4.53e-17 78.2
MS.gene50627.t1 AT5G65130 61.404 57 21 1 84 140 113 168 4.89e-17 78.2
MS.gene50627.t1 AT1G12980 63.793 58 20 1 84 141 57 113 5.30e-17 78.6
MS.gene50627.t1 AT1G22985 58.065 62 24 1 81 140 72 133 5.36e-17 75.5
MS.gene50627.t1 AT4G13620 52.000 75 32 2 66 140 217 287 6.28e-17 79.0
MS.gene50627.t1 AT2G46310 59.649 57 22 1 84 140 99 154 8.12e-17 77.8
MS.gene50627.t1 AT4G31060 51.471 68 31 2 84 151 27 92 1.18e-16 75.5
MS.gene50627.t1 AT2G20880 61.404 57 21 1 84 140 187 242 2.03e-16 77.0
MS.gene50627.t1 AT5G61590 55.714 70 31 0 73 142 96 165 2.76e-16 74.7
MS.gene50627.t1 AT4G39780 55.556 63 27 1 78 140 87 148 3.69e-16 75.5
MS.gene50627.t1 AT5G19790 55.738 61 26 1 81 141 19 78 3.99e-16 75.1
MS.gene50627.t1 AT1G75490 41.026 117 52 5 55 163 5 112 4.47e-16 74.3
MS.gene50627.t1 AT5G64750 58.462 65 24 2 91 153 192 255 6.53e-16 76.3
MS.gene50627.t1 AT1G01250 42.708 96 49 3 47 140 9 100 4.14e-15 71.2
MS.gene50627.t1 AT1G15360 52.308 65 30 1 78 142 1 64 4.32e-15 71.6
MS.gene50627.t1 AT1G15360 52.308 65 30 1 78 142 1 64 4.32e-15 71.6
MS.gene50627.t1 AT5G21960 53.968 63 28 1 78 140 1 62 5.59e-15 71.6
MS.gene50627.t1 AT1G71130 53.968 63 25 2 84 142 79 141 6.10e-15 70.1
MS.gene50627.t1 AT5G50080 50.962 104 33 4 37 140 56 141 7.56e-15 71.2
MS.gene50627.t1 AT5G50080 50.962 104 33 4 37 140 47 132 7.68e-15 71.2
MS.gene50627.t1 AT4G32800 48.684 76 34 2 65 140 4 74 1.57e-14 70.5
MS.gene50627.t1 AT5G05410 56.667 60 25 1 81 140 76 134 1.64e-14 71.2
MS.gene50627.t1 AT5G25390 53.846 65 29 1 78 142 1 64 1.65e-14 69.7
MS.gene50627.t1 AT5G25810 46.512 86 37 2 63 140 7 91 1.71e-14 70.1
MS.gene50627.t1 AT1G71450 55.932 59 25 1 82 140 22 79 1.97e-14 69.3
MS.gene50627.t1 AT5G05410 56.667 60 25 1 81 140 76 134 2.60e-14 71.2
MS.gene50627.t1 AT2G40350 52.542 59 27 1 84 142 74 131 4.04e-14 68.2
MS.gene50627.t1 AT2G40350 52.542 59 27 1 84 142 67 124 4.13e-14 67.8
MS.gene50627.t1 AT3G57600 51.613 62 28 2 84 144 28 88 5.49e-14 69.7
MS.gene50627.t1 AT1G19210 51.667 60 28 1 81 140 9 67 6.43e-14 68.2
MS.gene50627.t1 AT1G74930 48.529 68 32 2 73 140 12 76 6.93e-14 68.2
MS.gene50627.t1 AT3G11020 58.621 58 23 1 83 140 77 133 7.08e-14 69.7
MS.gene50627.t1 AT3G16280 52.459 61 28 1 80 140 75 134 8.80e-14 68.9
MS.gene50627.t1 AT3G16280 52.459 61 28 1 80 140 57 116 9.04e-14 68.6
MS.gene50627.t1 AT2G40340 57.895 57 23 1 84 140 14 69 1.10e-13 68.9
MS.gene50627.t1 AT2G40340 57.895 57 23 1 84 140 14 69 1.10e-13 68.9
MS.gene50627.t1 AT2G40340 57.895 57 23 1 84 140 14 69 1.10e-13 68.9
MS.gene50627.t1 AT3G50260 46.154 65 34 1 76 140 13 76 1.27e-13 66.6
MS.gene50627.t1 AT2G40340 57.895 57 23 1 84 140 72 127 1.45e-13 68.9
MS.gene50627.t1 AT2G40340 57.895 57 23 1 84 140 79 134 1.58e-13 68.9
MS.gene50627.t1 AT2G40340 57.895 57 23 1 84 140 72 127 1.75e-13 68.6
MS.gene50627.t1 AT3G60490 52.542 59 27 1 82 140 69 126 1.98e-13 67.8
MS.gene50627.t1 AT5G18450 51.724 58 27 1 83 140 33 89 2.01e-13 68.6
MS.gene50627.t1 AT2G44940 50.000 62 30 1 79 140 95 155 2.14e-13 68.2
MS.gene50627.t1 AT2G25820 54.386 57 25 1 84 140 26 81 2.17e-13 67.4
MS.gene50627.t1 AT5G11590 54.386 57 25 1 84 140 51 106 5.55e-13 66.2
MS.gene50627.t1 AT4G06746 50.877 57 27 1 84 140 36 91 5.65e-13 64.7
MS.gene50627.t1 AT5G25390 50.769 65 28 1 78 142 1 61 9.29e-13 64.7
MS.gene50627.t1 AT4G34410 67.241 58 18 1 83 140 135 191 1.38e-12 65.5
MS.gene50627.t1 AT1G43160 40.909 110 62 3 56 165 35 141 1.46e-12 64.3
MS.gene50627.t1 AT5G07310 62.295 61 22 1 80 140 88 147 1.75e-12 65.5
MS.gene50627.t1 AT4G36900 50.877 57 27 1 84 140 30 85 2.16e-12 63.9
MS.gene50627.t1 AT1G46768 45.902 61 32 1 81 141 28 87 3.51e-12 62.4
MS.gene50627.t1 AT1G46768 45.902 61 32 1 81 141 28 87 3.51e-12 62.4
MS.gene50627.t1 AT1G46768 46.667 60 31 1 81 140 28 86 3.55e-12 62.4
MS.gene50627.t1 AT2G35700 47.541 61 31 1 80 140 41 100 3.57e-12 63.5
MS.gene50627.t1 AT4G16750 40.625 96 41 3 60 140 1 95 5.02e-12 62.8
MS.gene50627.t1 AT5G67190 50.877 57 27 1 84 140 21 76 5.14e-12 62.8
MS.gene50627.t1 AT1G53170 64.407 59 20 1 84 142 31 88 5.84e-12 62.8
MS.gene50627.t1 AT2G23340 50.877 57 27 1 84 140 28 83 8.08e-12 62.0
MS.gene50627.t1 AT5G25190 52.632 57 26 1 84 140 8 63 1.52e-11 61.6
MS.gene50627.t1 AT3G14230 52.564 78 36 1 67 144 106 182 1.56e-11 63.2
MS.gene50627.t1 AT3G14230 52.564 78 36 1 67 144 107 183 1.63e-11 63.2
MS.gene50627.t1 AT3G14230 52.564 78 36 1 67 144 111 187 2.02e-11 63.2
MS.gene50627.t1 AT4G25470 40.426 94 46 4 84 171 51 140 2.22e-11 61.6
MS.gene50627.t1 AT4G25480 40.506 79 46 1 63 141 30 107 2.34e-11 61.6
MS.gene50627.t1 AT4G25490 50.000 58 28 1 84 141 48 104 4.34e-11 60.8
MS.gene50627.t1 AT1G53910 47.872 94 39 2 80 164 121 213 6.46e-11 61.6
MS.gene50627.t1 AT1G53910 47.872 94 39 2 80 164 121 213 6.46e-11 61.6
MS.gene50627.t1 AT1G53910 47.872 94 39 2 80 164 119 211 6.55e-11 61.6
MS.gene50627.t1 AT5G51990 39.241 79 47 1 63 141 33 110 7.52e-11 60.1

Find 34 sgRNAs with CRISPR-Local

Find 41 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGCTCGTCTTCGGTAAT+TGG 0.221863 1.2:+53306136 None:intergenic
CTTGCAGCATTTCTATATCT+TGG 0.282419 1.2:+53306248 None:intergenic
GACTCCAACATCAATTGTTT+TGG 0.284110 1.2:+53306118 None:intergenic
GAAATTTCCTTTGAATCATT+TGG 0.301807 1.2:-53306217 MS.gene50627:CDS
ATCAGAAGGATCAAGTGTTT+TGG 0.390577 1.2:-53305711 MS.gene50627:CDS
TAGTGCTGAAGATGCTGCTT+TGG 0.408553 1.2:-53305939 MS.gene50627:CDS
TAACAGAAACCATGCCTCAT+AGG 0.421808 1.2:-53306294 None:intergenic
GCATTTCTATATCTTGGTTG+TGG 0.422922 1.2:+53306254 None:intergenic
GATCAAAAGTCATCATATAT+AGG 0.429788 1.2:-53306049 MS.gene50627:CDS
GGTGTAAACAATAATAAAGC+AGG 0.463482 1.2:-53305746 MS.gene50627:CDS
ATTCAATATGATTGCAGAGA+AGG 0.479546 1.2:-53305830 MS.gene50627:CDS
CTCTCCTTGAGTGCAAGTGC+AGG 0.481899 1.2:+53305800 None:intergenic
CAAGAGGAGGAAGAAGGGTT+TGG 0.486954 1.2:-53305976 MS.gene50627:CDS
CAAAGAAAGATGTCATCAAA+AGG 0.492779 1.2:-53305767 MS.gene50627:CDS
TTCACCTGCACTTGCACTCA+AGG 0.497952 1.2:-53305804 MS.gene50627:CDS
CACAACAAGAGGAGGAAGAA+GGG 0.509329 1.2:-53305981 MS.gene50627:CDS
ACACAACAAGAGGAGGAAGA+AGG 0.516868 1.2:-53305982 MS.gene50627:CDS
ATTGCAGAATAATACTAAGA+TGG 0.517652 1.2:-53306071 MS.gene50627:CDS
ATTAATACCAAATGATTCAA+AGG 0.536862 1.2:+53306210 None:intergenic
TTCAATATGATTGCAGAGAA+GGG 0.552987 1.2:-53305829 MS.gene50627:CDS
GATTCAAAGGAAATTTCTGA+AGG 0.553216 1.2:+53306223 None:intergenic
CGAGCCAAAACAATTGATGT+TGG 0.560559 1.2:-53306122 MS.gene50627:CDS
TGAGAAATCGATCATATCAA+AGG 0.565420 1.2:+53306174 None:intergenic
GGAGGAAGAAGGGTTTGGCT+AGG 0.578788 1.2:-53305971 MS.gene50627:CDS
AAAGAGGAACAACTCCTATG+AGG 0.581206 1.2:+53306280 None:intergenic
ATTCAAAGGAAATTTCTGAA+GGG 0.605187 1.2:+53306224 None:intergenic
GGGAAACAAGATCAATCAGA+AGG 0.616003 1.2:-53305725 MS.gene50627:CDS
ATCAGAGACACAACAAGAGG+AGG 0.623407 1.2:-53305989 MS.gene50627:CDS
GTGTAAACAATAATAAAGCA+GGG 0.631868 1.2:-53305745 MS.gene50627:CDS
GGAACAACTCCTATGAGGCA+TGG 0.640719 1.2:+53306285 None:intergenic
TCAGCTGCATACTTTCCCCA+AGG 0.649835 1.2:+53306013 None:intergenic
GAGATCAGAGACACAACAAG+AGG 0.662555 1.2:-53305992 MS.gene50627:CDS
CAAGATATAGAAATGCTGCA+AGG 0.679469 1.2:-53306247 MS.gene50627:CDS
ATCTTGGTTGTGGAACAAAG+AGG 0.713106 1.2:+53306264 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATACCAAATGATTCAA+AGG + chr1.2:53305707-53305726 None:intergenic 20.0%
! ATTCAAAGGAAATTTCTGAA+GGG + chr1.2:53305693-53305712 None:intergenic 25.0%
! ATTGCAGAATAATACTAAGA+TGG - chr1.2:53305843-53305862 MS.gene50627:CDS 25.0%
! GAAATTTCCTTTGAATCATT+TGG - chr1.2:53305697-53305716 MS.gene50627:CDS 25.0%
! GATCAAAAGTCATCATATAT+AGG - chr1.2:53305865-53305884 MS.gene50627:CDS 25.0%
! GTGTAAACAATAATAAAGCA+GGG - chr1.2:53306169-53306188 MS.gene50627:CDS 25.0%
ATTCAATATGATTGCAGAGA+AGG - chr1.2:53306084-53306103 MS.gene50627:CDS 30.0%
CAAAGAAAGATGTCATCAAA+AGG - chr1.2:53306147-53306166 MS.gene50627:CDS 30.0%
GATTCAAAGGAAATTTCTGA+AGG + chr1.2:53305694-53305713 None:intergenic 30.0%
GGTGTAAACAATAATAAAGC+AGG - chr1.2:53306168-53306187 MS.gene50627:CDS 30.0%
TGAGAAATCGATCATATCAA+AGG + chr1.2:53305743-53305762 None:intergenic 30.0%
TTCAATATGATTGCAGAGAA+GGG - chr1.2:53306085-53306104 MS.gene50627:CDS 30.0%
! GCTCAATTTTTCTGTTCAAA+GGG - chr1.2:53306041-53306060 MS.gene50627:CDS 30.0%
! TGCTCAATTTTTCTGTTCAA+AGG - chr1.2:53306040-53306059 MS.gene50627:CDS 30.0%
CAAGATATAGAAATGCTGCA+AGG - chr1.2:53305667-53305686 MS.gene50627:CDS 35.0%
CTTGCAGCATTTCTATATCT+TGG + chr1.2:53305669-53305688 None:intergenic 35.0%
GCATTTCTATATCTTGGTTG+TGG + chr1.2:53305663-53305682 None:intergenic 35.0%
! ATCAGAAGGATCAAGTGTTT+TGG - chr1.2:53306203-53306222 MS.gene50627:CDS 35.0%
! GACTCCAACATCAATTGTTT+TGG + chr1.2:53305799-53305818 None:intergenic 35.0%
!!! GTTTTGGTGTTAGAAGACTT+GGG - chr1.2:53306219-53306238 MS.gene50627:CDS 35.0%
!!! TGTTTTGGTGTTAGAAGACT+TGG - chr1.2:53306218-53306237 MS.gene50627:CDS 35.0%
AAAGAGGAACAACTCCTATG+AGG + chr1.2:53305637-53305656 None:intergenic 40.0%
AGGTGTGAGAAAAAGACCTT+GGG - chr1.2:53305885-53305904 MS.gene50627:CDS 40.0%
ATCTTGGTTGTGGAACAAAG+AGG + chr1.2:53305653-53305672 None:intergenic 40.0%
CGAGCCAAAACAATTGATGT+TGG - chr1.2:53305792-53305811 MS.gene50627:CDS 40.0%
GGGAAACAAGATCAATCAGA+AGG - chr1.2:53306189-53306208 MS.gene50627:CDS 40.0%
TAGGTGTGAGAAAAAGACCT+TGG - chr1.2:53305884-53305903 MS.gene50627:CDS 40.0%
! CAAGCTGCATTTTCAATGAG+AGG - chr1.2:53306006-53306025 MS.gene50627:CDS 40.0%
!!! CAATTGTTTTGGCTCGTCTT+CGG + chr1.2:53305788-53305807 None:intergenic 40.0%
ACACAACAAGAGGAGGAAGA+AGG - chr1.2:53305932-53305951 MS.gene50627:CDS 45.0%
ATCAGAGACACAACAAGAGG+AGG - chr1.2:53305925-53305944 MS.gene50627:CDS 45.0%
CACAACAAGAGGAGGAAGAA+GGG - chr1.2:53305933-53305952 MS.gene50627:CDS 45.0%
GAGATCAGAGACACAACAAG+AGG - chr1.2:53305922-53305941 MS.gene50627:CDS 45.0%
GGTGTGAGAAAAAGACCTTG+GGG - chr1.2:53305886-53305905 MS.gene50627:CDS 45.0%
! TAGTGCTGAAGATGCTGCTT+TGG - chr1.2:53305975-53305994 MS.gene50627:CDS 45.0%
! TTTGGCTCGTCTTCGGTAAT+TGG + chr1.2:53305781-53305800 None:intergenic 45.0%
CAAGAGGAGGAAGAAGGGTT+TGG - chr1.2:53305938-53305957 MS.gene50627:CDS 50.0%
TCAGCTGCATACTTTCCCCA+AGG + chr1.2:53305904-53305923 None:intergenic 50.0%
TTCACCTGCACTTGCACTCA+AGG - chr1.2:53306110-53306129 MS.gene50627:CDS 50.0%
CTCTCCTTGAGTGCAAGTGC+AGG + chr1.2:53306117-53306136 None:intergenic 55.0%
GGAGGAAGAAGGGTTTGGCT+AGG - chr1.2:53305943-53305962 MS.gene50627:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 53305631 53306305 53305631 ID=MS.gene50627
chr1.2 mRNA 53305631 53306305 53305631 ID=MS.gene50627.t1;Parent=MS.gene50627
chr1.2 exon 53305631 53306305 53305631 ID=MS.gene50627.t1.exon1;Parent=MS.gene50627.t1
chr1.2 CDS 53305631 53306305 53305631 ID=cds.MS.gene50627.t1;Parent=MS.gene50627.t1
Gene Sequence

>MS.gene50627

ATGCCTCATAGGAGTTGTTCCTCTTTGTTCCACAACCAAGATATAGAAATGCTGCAAGGCCCTTCAGAAATTTCCTTTGAATCATTTGGTATTAATCATGATTTTCTTTCCTTTGATATGATCGATTTCTCATCGAGTTCGCAGACACCAATTACCGAAGACGAGCCAAAACAATTGATGTTGGAGTCATCATCATCTGAAGCAAAAGAAGTATTGCAGAATAATACTAAGATGGATCAAAAGTCATCATATATAGGTGTGAGAAAAAGACCTTGGGGAAAGTATGCAGCTGAGATCAGAGACACAACAAGAGGAGGAAGAAGGGTTTGGCTAGGAACATTTGATAGTGCTGAAGATGCTGCTTTGGCTTATGATCAAGCTGCATTTTCAATGAGAGGTAATAATGCTGTGCTCAATTTTTCTGTTCAAAGGGTCAAAGAATCTTTGCAAGAGATTCAATATGATTGCAGAGAAGGGTCTTCACCTGCACTTGCACTCAAGGAGAGACACTGTGAACAAAGAAAGATGTCATCAAAAGGTGTAAACAATAATAAAGCAGGGAAACAAGATCAATCAGAAGGATCAAGTGTTTTGGTGTTAGAAGACTTGGGAGTTGAATATCTTGAGCAACTTCTAACAATATCTGATAATCAAAGTACAAGCAGCAACAGCTAG
Protein sequence

>MS.gene50627.t1

MPHRSCSSLFHNQDIEMLQGPSEISFESFGINHDFLSFDMIDFSSSSQTPITEDEPKQLMLESSSSEAKEVLQNNTKMDQKSSYIGVRKRPWGKYAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRGNNAVLNFSVQRVKESLQEIQYDCREGSSPALALKERHCEQRKMSSKGVNNNKAGKQDQSEGSSVLVLEDLGVEYLEQLLTISDNQSTSSNS