Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50878.t1 | XP_013459052.1 | 96.2 | 266 | 10 | 0 | 1 | 266 | 1 | 266 | 2.20E-136 | 495 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50878.t1 | Q9S7P9 | 58.0 | 269 | 103 | 3 | 1 | 262 | 1 | 266 | 1.1e-72 | 274.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50878.t1 | A0A072V4J0 | 96.2 | 266 | 10 | 0 | 1 | 266 | 1 | 266 | 1.6e-136 | 495.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052287 | MS.gene50878 | -0.800247 | 1.58E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50878.t1 | MTR_3g023720 | 97.328 | 262 | 7 | 0 | 1 | 262 | 1 | 262 | 0.0 | 530 |
| MS.gene50878.t1 | MTR_3g023720 | 97.845 | 232 | 5 | 0 | 1 | 232 | 1 | 232 | 2.96e-171 | 473 |
| MS.gene50878.t1 | MTR_4g109310 | 66.418 | 268 | 82 | 3 | 1 | 262 | 1 | 266 | 5.58e-112 | 325 |
| MS.gene50878.t1 | MTR_8g021950 | 68.508 | 181 | 57 | 0 | 82 | 262 | 13 | 193 | 7.85e-85 | 253 |
| MS.gene50878.t1 | MTR_5g043850 | 58.523 | 176 | 73 | 0 | 87 | 262 | 62 | 237 | 2.51e-68 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50878.t1 | AT5G61210 | 58.029 | 274 | 95 | 6 | 1 | 262 | 1 | 266 | 1.78e-97 | 288 |
| MS.gene50878.t1 | AT5G61210 | 58.029 | 274 | 95 | 6 | 1 | 262 | 1 | 266 | 1.78e-97 | 288 |
| MS.gene50878.t1 | AT1G13890 | 63.731 | 193 | 68 | 1 | 70 | 262 | 39 | 229 | 2.43e-84 | 253 |
| MS.gene50878.t1 | AT1G13890 | 63.731 | 193 | 68 | 1 | 70 | 262 | 39 | 229 | 2.43e-84 | 253 |
| MS.gene50878.t1 | AT5G07880 | 47.297 | 222 | 108 | 4 | 45 | 262 | 1 | 217 | 2.40e-64 | 202 |
| MS.gene50878.t1 | AT5G07880 | 47.297 | 222 | 108 | 4 | 45 | 262 | 1 | 217 | 2.40e-64 | 202 |
Find 69 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTTGGTTTCCATGTTT+TGG | 0.127306 | 3.1:+14235611 | None:intergenic |
| CTTGGCTTTGACTGTCCTTT+AGG | 0.144912 | 3.1:+14235398 | None:intergenic |
| TTGGCTTTGACTGTCCTTTA+GGG | 0.248198 | 3.1:+14235399 | None:intergenic |
| TGATTCTGATGAAGAGAAAA+AGG | 0.275386 | 3.1:-14236429 | MS.gene50878:CDS |
| GGAGGAATATGCTGTTTATA+AGG | 0.310753 | 3.1:-14236201 | MS.gene50878:CDS |
| ATTGACATGGGAGTAGAAAT+TGG | 0.324319 | 3.1:-14234661 | MS.gene50878:CDS |
| TCAATACCCTGCTTAAATTA+TGG | 0.328730 | 3.1:+14236039 | None:intergenic |
| GAGTCAATCTGTGGAGGATT+TGG | 0.329006 | 3.1:-14236222 | MS.gene50878:CDS |
| ACTCTTTCAAATGCATTTGT+TGG | 0.338928 | 3.1:+14235359 | None:intergenic |
| GTCAGATATAAGTGATCTCT+TGG | 0.355240 | 3.1:-14234704 | MS.gene50878:CDS |
| TTTGGTCATGCTGCATCATC+AGG | 0.361549 | 3.1:-14236105 | MS.gene50878:CDS |
| GGCTCAGAAAGTGCTTTCCT+TGG | 0.400984 | 3.1:+14235380 | None:intergenic |
| AGAGAGAGATAGAAAATGTT+AGG | 0.401906 | 3.1:-14236506 | None:intergenic |
| TTGGAGCAACGAGAGAAGTT+AGG | 0.406014 | 3.1:-14235434 | MS.gene50878:CDS |
| ACAGGCCCTACAATATTTGC+AGG | 0.407886 | 3.1:-14235576 | MS.gene50878:intron |
| AAGAAGACAGGCAAAATAAC+AGG | 0.410581 | 3.1:-14235594 | MS.gene50878:CDS |
| TGCTAACCTGCAAATATTGT+AGG | 0.433138 | 3.1:+14235570 | None:intergenic |
| TTCTCTTCATCAGAATCAAA+GGG | 0.446731 | 3.1:+14236434 | None:intergenic |
| CGAGCATCAACATCATCAAA+AGG | 0.454347 | 3.1:+14236332 | None:intergenic |
| CTCTCGTTGCTCCAAGTGGT+TGG | 0.462236 | 3.1:+14235442 | None:intergenic |
| TTTCTCTTCATCAGAATCAA+AGG | 0.462308 | 3.1:+14236433 | None:intergenic |
| TATTAGTTTCTCTCTGAACT+AGG | 0.463530 | 3.1:+14236360 | None:intergenic |
| GGATTGAATTCTGCCCCTAA+AGG | 0.490760 | 3.1:-14235413 | MS.gene50878:CDS |
| TTGACATGGGAGTAGAAATT+GGG | 0.493604 | 3.1:-14234660 | MS.gene50878:CDS |
| GGCTGAAGAGACGACAAAAT+CGG | 0.495076 | 3.1:-14236180 | MS.gene50878:CDS |
| GCATTGACCATAATTTAAGC+AGG | 0.500853 | 3.1:-14236046 | MS.gene50878:CDS |
| TGATCTCTTGGGAGAACTGA+AGG | 0.508784 | 3.1:-14234692 | MS.gene50878:CDS |
| TCATCTTATGCCCCGTCCTA+CGG | 0.516744 | 3.1:-14236293 | MS.gene50878:CDS |
| AATTTCTACTCCCATGTCAA+TGG | 0.517023 | 3.1:+14234663 | None:intergenic |
| AGAGGATGCTACCAAGACTT+TGG | 0.532804 | 3.1:-14236123 | MS.gene50878:CDS |
| CAAAATCGGTGAACAATTGT+CGG | 0.533276 | 3.1:-14236166 | MS.gene50878:CDS |
| GAAGGGCATGGCCATTGACA+TGG | 0.535314 | 3.1:-14234674 | MS.gene50878:CDS |
| TCAATCTGTGGAGGATTTGG+AGG | 0.539441 | 3.1:-14236219 | MS.gene50878:CDS |
| AAGAACGACTTCCGTGACTC+TGG | 0.543178 | 3.1:-14236254 | MS.gene50878:CDS |
| CTGGGTTTAGCATCTTTCAA+AGG | 0.544377 | 3.1:+14236470 | None:intergenic |
| ATGCAGCATGACCAAAGTCT+TGG | 0.547106 | 3.1:+14236112 | None:intergenic |
| ATCAACATCATCAAAAGGGT+TGG | 0.547359 | 3.1:+14236337 | None:intergenic |
| TGTTTCGATTTCCGTAGGAC+GGG | 0.548263 | 3.1:+14236282 | None:intergenic |
| AAGGGATTATGCTTAGACCT+GGG | 0.549583 | 3.1:+14236452 | None:intergenic |
| TCAGATATAAGTGATCTCTT+GGG | 0.552352 | 3.1:-14234703 | MS.gene50878:CDS |
| AAAGGGATTATGCTTAGACC+TGG | 0.553655 | 3.1:+14236451 | None:intergenic |
| ATCAGGGCGAGCAGATTACA+AGG | 0.553800 | 3.1:-14236088 | MS.gene50878:CDS |
| GCTAACCTGCAAATATTGTA+GGG | 0.565828 | 3.1:+14235571 | None:intergenic |
| GTTTCGATTTCCGTAGGACG+GGG | 0.567133 | 3.1:+14236283 | None:intergenic |
| AGGAGTCACGATATTGCTGC+TGG | 0.568758 | 3.1:-14236068 | MS.gene50878:CDS |
| AAACTATTGGGAAATCTTGG+TGG | 0.568922 | 3.1:-14235642 | MS.gene50878:CDS |
| CTGAACTAGGTTATATTCAG+AGG | 0.568978 | 3.1:+14236373 | None:intergenic |
| ACATGGAAACCAAAGAAGAC+AGG | 0.577046 | 3.1:-14235606 | MS.gene50878:CDS |
| ATGTTTCGATTTCCGTAGGA+CGG | 0.580913 | 3.1:+14236281 | None:intergenic |
| ACTTCTCTCGTTGCTCCAAG+TGG | 0.582499 | 3.1:+14235438 | None:intergenic |
| TGGCTTTGACTGTCCTTTAG+GGG | 0.590549 | 3.1:+14235400 | None:intergenic |
| ATACATGTTTCGATTTCCGT+AGG | 0.590555 | 3.1:+14236277 | None:intergenic |
| GAGCATCAACATCATCAAAA+GGG | 0.590617 | 3.1:+14236333 | None:intergenic |
| TTTGATGATGTTGATGCTCG+TGG | 0.590946 | 3.1:-14236329 | MS.gene50878:CDS |
| CTTGGGAGAACTGAAGGGCA+TGG | 0.596068 | 3.1:-14234686 | MS.gene50878:CDS |
| GTGGCATATTCTCCAAAACA+TGG | 0.599060 | 3.1:-14235623 | MS.gene50878:CDS |
| GATCTCTTGGGAGAACTGAA+GGG | 0.608369 | 3.1:-14234691 | MS.gene50878:CDS |
| AACGACTTCCGTGACTCTGG+TGG | 0.615758 | 3.1:-14236251 | MS.gene50878:CDS |
| AAATGCATTTGAAAGAGTCG+AGG | 0.622017 | 3.1:-14235354 | MS.gene50878:intron |
| CATTGACCATAATTTAAGCA+GGG | 0.624462 | 3.1:-14236045 | MS.gene50878:intron |
| AAGGGCATGGCCATTGACAT+GGG | 0.629943 | 3.1:-14234673 | MS.gene50878:CDS |
| TCTGCAATCCACCAGAGTCA+CGG | 0.629953 | 3.1:+14236243 | None:intergenic |
| TTGGTCATGCTGCATCATCA+GGG | 0.636187 | 3.1:-14236104 | MS.gene50878:CDS |
| CTAAAGGACAGTCAAAGCCA+AGG | 0.641205 | 3.1:-14235397 | MS.gene50878:CDS |
| GATAGCAGAGGAAATGCGAG+AGG | 0.657516 | 3.1:-14236141 | MS.gene50878:CDS |
| ATTGCAGAGTCAATCTGTGG+AGG | 0.684326 | 3.1:-14236228 | MS.gene50878:CDS |
| TGGATTGCAGAGTCAATCTG+TGG | 0.696583 | 3.1:-14236231 | MS.gene50878:CDS |
| CTTTGAAAGATGCTAAACCC+AGG | 0.703733 | 3.1:-14236469 | MS.gene50878:CDS |
| CAATTGTCGGAAGATAGCAG+AGG | 0.756558 | 3.1:-14236153 | MS.gene50878:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATATTGATGTTTATA+GGG | - | chr3.1:14235401-14235420 | MS.gene50878:CDS | 10.0% |
| !!! | TTTTTTATATTGATGTTTAT+AGG | - | chr3.1:14235400-14235419 | MS.gene50878:CDS | 10.0% |
| !! | CTTAAATGAAATGTTAATAA+GGG | - | chr3.1:14236082-14236101 | MS.gene50878:CDS | 15.0% |
| !! | TCTTAAATGAAATGTTAATA+AGG | - | chr3.1:14236081-14236100 | MS.gene50878:CDS | 15.0% |
| !!! | TATTTCAAATTTTAGTTGTT+TGG | - | chr3.1:14235968-14235987 | MS.gene50878:intron | 15.0% |
| !!! | TATTTTGCATCAATTAAATA+TGG | + | chr3.1:14235067-14235086 | None:intergenic | 15.0% |
| !!! | TTCATTTAAGATTTAATGTA+AGG | + | chr3.1:14236072-14236091 | None:intergenic | 15.0% |
| !! | AAAATCACAAATGAAAACTA+AGG | + | chr3.1:14236281-14236300 | None:intergenic | 20.0% |
| !! | ACTGTTAAAGAATATTTAGA+AGG | + | chr3.1:14236479-14236498 | None:intergenic | 20.0% |
| !! | GTGATTAATTTCTTAATAGT+TGG | - | chr3.1:14235831-14235850 | MS.gene50878:intron | 20.0% |
| !! | TTAATTGATGCAAAATACTA+TGG | - | chr3.1:14235070-14235089 | MS.gene50878:intron | 20.0% |
| !!! | AATCCAAATCCAATTATTTT+AGG | - | chr3.1:14235279-14235298 | MS.gene50878:intron | 20.0% |
| !!! | TTCAATTTCTTTTAGAGTAT+AGG | - | chr3.1:14235991-14236010 | MS.gene50878:intron | 20.0% |
| !!! | TTTTGAAGTTCAGTTATTTT+GGG | - | chr3.1:14235544-14235563 | MS.gene50878:intron | 20.0% |
| !!! | TTTTTATCTTAGTGAAAACA+AGG | - | chr3.1:14235331-14235350 | MS.gene50878:intron | 20.0% |
| ! | AATTGTTTATAAACTCGTAG+AGG | - | chr3.1:14236031-14236050 | MS.gene50878:intron | 25.0% |
| ! | AGACCTAAAATAATTGGATT+TGG | + | chr3.1:14235285-14235304 | None:intergenic | 25.0% |
| ! | CAAACAATGAAATGGTAATT+AGG | + | chr3.1:14235877-14235896 | None:intergenic | 25.0% |
| ! | CTAATTACCATTTCATTGTT+TGG | - | chr3.1:14235875-14235894 | MS.gene50878:intron | 25.0% |
| ! | TATCAATAATTCTGTCTGTA+AGG | + | chr3.1:14236186-14236205 | None:intergenic | 25.0% |
| ! | TTATAGGGAGAAAAACTATT+GGG | - | chr3.1:14235416-14235435 | MS.gene50878:CDS | 25.0% |
| ! | TTTATAGGGAGAAAAACTAT+TGG | - | chr3.1:14235415-14235434 | MS.gene50878:CDS | 25.0% |
| !! | TAAAACAAAGCACTTTCTAA+GGG | + | chr3.1:14235378-14235397 | None:intergenic | 25.0% |
| !! | TAATGACTTGAAAGTATAAG+TGG | + | chr3.1:14236241-14236260 | None:intergenic | 25.0% |
| !! | TTAAAACAAAGCACTTTCTA+AGG | + | chr3.1:14235379-14235398 | None:intergenic | 25.0% |
| !!! | ATTTCTTTTAGAGTATAGGA+TGG | - | chr3.1:14235995-14236014 | MS.gene50878:intron | 25.0% |
| !!! | CTTTTGAAGTTCAGTTATTT+TGG | - | chr3.1:14235543-14235562 | MS.gene50878:intron | 25.0% |
| !!! | TTTCTTTTAGAGTATAGGAT+GGG | - | chr3.1:14235996-14236015 | MS.gene50878:intron | 25.0% |
| AAACAAGCCCTAAGTAAAAT+CGG | + | chr3.1:14235907-14235926 | None:intergenic | 30.0% | |
| ACTCTTTCAAATGCATTTGT+TGG | + | chr3.1:14235714-14235733 | None:intergenic | 30.0% | |
| ATATCATATATGCTTGAGGA+AGG | + | chr3.1:14236131-14236150 | None:intergenic | 30.0% | |
| CATTGACCATAATTTAAGCA+GGG | - | chr3.1:14235025-14235044 | MS.gene50878:intron | 30.0% | |
| GAAAAACTATTGGGAAATCT+TGG | - | chr3.1:14235425-14235444 | MS.gene50878:CDS | 30.0% | |
| TCAATACCCTGCTTAAATTA+TGG | + | chr3.1:14235034-14235053 | None:intergenic | 30.0% | |
| TCAGATATAAGTGATCTCTT+GGG | - | chr3.1:14236367-14236386 | MS.gene50878:CDS | 30.0% | |
| TCTAGGAGACCTAAAATAAT+TGG | + | chr3.1:14235291-14235310 | None:intergenic | 30.0% | |
| TGAGATATCATATATGCTTG+AGG | + | chr3.1:14236135-14236154 | None:intergenic | 30.0% | |
| TGATTCTGATGAAGAGAAAA+AGG | - | chr3.1:14234641-14234660 | MS.gene50878:intron | 30.0% | |
| TTAATGAAAACAGAGATGCA+TGG | - | chr3.1:14235929-14235948 | MS.gene50878:intron | 30.0% | |
| TTCTCTTCATCAGAATCAAA+GGG | + | chr3.1:14234639-14234658 | None:intergenic | 30.0% | |
| TTTCTCTTCATCAGAATCAA+AGG | + | chr3.1:14234640-14234659 | None:intergenic | 30.0% | |
| ! | AAAACAAAGCACTTTCTAAG+GGG | + | chr3.1:14235377-14235396 | None:intergenic | 30.0% |
| ! | CTTTCAAGTCATTATAAGTC+TGG | - | chr3.1:14236247-14236266 | MS.gene50878:CDS | 30.0% |
| ! | TATTAGTTTCTCTCTGAACT+AGG | + | chr3.1:14234713-14234732 | None:intergenic | 30.0% |
| !!! | ATTATTTTAGGTCTCCTAGA+TGG | - | chr3.1:14235291-14235310 | MS.gene50878:intron | 30.0% |
| !!! | TTATTTTAGGTCTCCTAGAT+GGG | - | chr3.1:14235292-14235311 | MS.gene50878:intron | 30.0% |
| AAACTATTGGGAAATCTTGG+TGG | - | chr3.1:14235428-14235447 | MS.gene50878:CDS | 35.0% | |
| AAATGCATTTGAAAGAGTCG+AGG | - | chr3.1:14235716-14235735 | MS.gene50878:intron | 35.0% | |
| AAGAAGACAGGCAAAATAAC+AGG | - | chr3.1:14235476-14235495 | MS.gene50878:intron | 35.0% | |
| AATTTCTACTCCCATGTCAA+TGG | + | chr3.1:14236410-14236429 | None:intergenic | 35.0% | |
| ACTAAGATAAAAACAGCACG+AGG | + | chr3.1:14235324-14235343 | None:intergenic | 35.0% | |
| ATACATGTTTCGATTTCCGT+AGG | + | chr3.1:14234796-14234815 | None:intergenic | 35.0% | |
| ATCAACATCATCAAAAGGGT+TGG | + | chr3.1:14234736-14234755 | None:intergenic | 35.0% | |
| ATTGACATGGGAGTAGAAAT+TGG | - | chr3.1:14236409-14236428 | MS.gene50878:CDS | 35.0% | |
| CAAAATCGGTGAACAATTGT+CGG | - | chr3.1:14234904-14234923 | MS.gene50878:intron | 35.0% | |
| CATTGCTGAGATCAATACTA+AGG | + | chr3.1:14236306-14236325 | None:intergenic | 35.0% | |
| CTGAACTAGGTTATATTCAG+AGG | + | chr3.1:14234700-14234719 | None:intergenic | 35.0% | |
| GAGCATCAACATCATCAAAA+GGG | + | chr3.1:14234740-14234759 | None:intergenic | 35.0% | |
| GCTAACCTGCAAATATTGTA+GGG | + | chr3.1:14235502-14235521 | None:intergenic | 35.0% | |
| GTCAGATATAAGTGATCTCT+TGG | - | chr3.1:14236366-14236385 | MS.gene50878:CDS | 35.0% | |
| GTCATTGGATGAAAATCAGA+TGG | - | chr3.1:14235146-14235165 | MS.gene50878:intron | 35.0% | |
| TGCTAACCTGCAAATATTGT+AGG | + | chr3.1:14235503-14235522 | None:intergenic | 35.0% | |
| TTGACATGGGAGTAGAAATT+GGG | - | chr3.1:14236410-14236429 | MS.gene50878:CDS | 35.0% | |
| ! | AAATGAAAACTAAGGCATCC+AGG | + | chr3.1:14236273-14236292 | None:intergenic | 35.0% |
| ! | GCATTGACCATAATTTAAGC+AGG | - | chr3.1:14235024-14235043 | MS.gene50878:intron | 35.0% |
| ! | GGAGGAATATGCTGTTTATA+AGG | - | chr3.1:14234869-14234888 | MS.gene50878:intron | 35.0% |
| !! | CTTCTTTGGTTTCCATGTTT+TGG | + | chr3.1:14235462-14235481 | None:intergenic | 35.0% |
| !! | GATTTTACTTAGGGCTTGTT+TGG | - | chr3.1:14235906-14235925 | MS.gene50878:intron | 35.0% |
| !! | GTTATTTTGCCTGTCTTCTT+TGG | + | chr3.1:14235476-14235495 | None:intergenic | 35.0% |
| AAAGGGATTATGCTTAGACC+TGG | + | chr3.1:14234622-14234641 | None:intergenic | 40.0% | |
| AAGATAAAAACAGCACGAGG+AGG | + | chr3.1:14235321-14235340 | None:intergenic | 40.0% | |
| AAGCCCTAAGTAAAATCGGT+TGG | + | chr3.1:14235903-14235922 | None:intergenic | 40.0% | |
| AAGGGATTATGCTTAGACCT+GGG | + | chr3.1:14234621-14234640 | None:intergenic | 40.0% | |
| AAGTCATTATAAGTCTGGCC+TGG | - | chr3.1:14236252-14236271 | MS.gene50878:CDS | 40.0% | |
| ACATGGAAACCAAAGAAGAC+AGG | - | chr3.1:14235464-14235483 | MS.gene50878:CDS | 40.0% | |
| AGATAAAAACAGCACGAGGA+GGG | + | chr3.1:14235320-14235339 | None:intergenic | 40.0% | |
| ATCAGTTGACTGCAAGCATT+TGG | + | chr3.1:14235116-14235135 | None:intergenic | 40.0% | |
| ATGTTTCGATTTCCGTAGGA+CGG | + | chr3.1:14234792-14234811 | None:intergenic | 40.0% | |
| CGAGCATCAACATCATCAAA+AGG | + | chr3.1:14234741-14234760 | None:intergenic | 40.0% | |
| CTGGGTTTAGCATCTTTCAA+AGG | + | chr3.1:14234603-14234622 | None:intergenic | 40.0% | |
| CTGTCTGTAAGGTTCAAACA+AGG | + | chr3.1:14236175-14236194 | None:intergenic | 40.0% | |
| GATGCAAAATACTATGGACC+AGG | - | chr3.1:14235076-14235095 | MS.gene50878:intron | 40.0% | |
| GCCATTGGATGAAGAATAGA+AGG | + | chr3.1:14235224-14235243 | None:intergenic | 40.0% | |
| GCCTTCTATTCTTCATCCAA+TGG | - | chr3.1:14235220-14235239 | MS.gene50878:intron | 40.0% | |
| GTGGCATATTCTCCAAAACA+TGG | - | chr3.1:14235447-14235466 | MS.gene50878:CDS | 40.0% | |
| GTTCAAACAAGGATACGACA+GGG | + | chr3.1:14236164-14236183 | None:intergenic | 40.0% | |
| GTTTCAATAGTCGTGGATCT+CGG | + | chr3.1:14235246-14235265 | None:intergenic | 40.0% | |
| ! | CTTTGAAAGATGCTAAACCC+AGG | - | chr3.1:14234601-14234620 | MS.gene50878:intron | 40.0% |
| ! | GTTGGCTCCAAACAATGAAA+TGG | + | chr3.1:14235885-14235904 | None:intergenic | 40.0% |
| !! | AGTCGAGGTTGGTAATAACT+TGG | - | chr3.1:14235731-14235750 | MS.gene50878:intron | 40.0% |
| !! | GAGCCAACCGATTTTACTTA+GGG | - | chr3.1:14235897-14235916 | MS.gene50878:intron | 40.0% |
| !! | TCTCAGCAATGTTCTGAAAC+AGG | - | chr3.1:14236315-14236334 | MS.gene50878:CDS | 40.0% |
| !! | TTGGCTTTGACTGTCCTTTA+GGG | + | chr3.1:14235674-14235693 | None:intergenic | 40.0% |
| !! | TTTGATGATGTTGATGCTCG+TGG | - | chr3.1:14234741-14234760 | MS.gene50878:intron | 40.0% |
| ACAGAGATGCATGGTGAGAA+TGG | - | chr3.1:14235938-14235957 | MS.gene50878:intron | 45.0% | |
| ACAGGCCCTACAATATTTGC+AGG | - | chr3.1:14235494-14235513 | MS.gene50878:intron | 45.0% | |
| AGAGGATGCTACCAAGACTT+TGG | - | chr3.1:14234947-14234966 | MS.gene50878:intron | 45.0% | |
| AGTCGCAGTTTCAATAGTCG+TGG | + | chr3.1:14235253-14235272 | None:intergenic | 45.0% | |
| ATGCAGCATGACCAAAGTCT+TGG | + | chr3.1:14234961-14234980 | None:intergenic | 45.0% | |
| ATTGCAGAGTCAATCTGTGG+AGG | - | chr3.1:14234842-14234861 | MS.gene50878:intron | 45.0% | |
| CAATTGTCGGAAGATAGCAG+AGG | - | chr3.1:14234917-14234936 | MS.gene50878:intron | 45.0% | |
| CTAAAGGACAGTCAAAGCCA+AGG | - | chr3.1:14235673-14235692 | MS.gene50878:intron | 45.0% | |
| GAGTCAATCTGTGGAGGATT+TGG | - | chr3.1:14234848-14234867 | MS.gene50878:intron | 45.0% | |
| GATCTCTTGGGAGAACTGAA+GGG | - | chr3.1:14236379-14236398 | MS.gene50878:CDS | 45.0% | |
| GCATTTGAAAGAGTCGAGGT+TGG | - | chr3.1:14235720-14235739 | MS.gene50878:intron | 45.0% | |
| GGATTGAATTCTGCCCCTAA+AGG | - | chr3.1:14235657-14235676 | MS.gene50878:intron | 45.0% | |
| GGCTGAAGAGACGACAAAAT+CGG | - | chr3.1:14234890-14234909 | MS.gene50878:intron | 45.0% | |
| GGTTCAAACAAGGATACGAC+AGG | + | chr3.1:14236165-14236184 | None:intergenic | 45.0% | |
| TCAATCTGTGGAGGATTTGG+AGG | - | chr3.1:14234851-14234870 | MS.gene50878:intron | 45.0% | |
| TGATCTCTTGGGAGAACTGA+AGG | - | chr3.1:14236378-14236397 | MS.gene50878:CDS | 45.0% | |
| TGCTTGCAGTCAACTGATCT+CGG | - | chr3.1:14235118-14235137 | MS.gene50878:intron | 45.0% | |
| TGGATTGCAGAGTCAATCTG+TGG | - | chr3.1:14234839-14234858 | MS.gene50878:intron | 45.0% | |
| TGTTTCGATTTCCGTAGGAC+GGG | + | chr3.1:14234791-14234810 | None:intergenic | 45.0% | |
| TTGGAGCAACGAGAGAAGTT+AGG | - | chr3.1:14235636-14235655 | MS.gene50878:CDS | 45.0% | |
| TTGGTCATGCTGCATCATCA+GGG | - | chr3.1:14234966-14234985 | MS.gene50878:intron | 45.0% | |
| TTTGGTCATGCTGCATCATC+AGG | - | chr3.1:14234965-14234984 | MS.gene50878:intron | 45.0% | |
| !! | CTTGGCTTTGACTGTCCTTT+AGG | + | chr3.1:14235675-14235694 | None:intergenic | 45.0% |
| !! | GGAGCCAACCGATTTTACTT+AGG | - | chr3.1:14235896-14235915 | MS.gene50878:intron | 45.0% |
| !! | TGGCTTTGACTGTCCTTTAG+GGG | + | chr3.1:14235673-14235692 | None:intergenic | 45.0% |
| AAGAACGACTTCCGTGACTC+TGG | - | chr3.1:14234816-14234835 | MS.gene50878:intron | 50.0% | |
| ACTTCTCTCGTTGCTCCAAG+TGG | + | chr3.1:14235635-14235654 | None:intergenic | 50.0% | |
| AGGAGTCACGATATTGCTGC+TGG | - | chr3.1:14235002-14235021 | MS.gene50878:intron | 50.0% | |
| ATCAGGGCGAGCAGATTACA+AGG | - | chr3.1:14234982-14235001 | MS.gene50878:intron | 50.0% | |
| CAGTCAACTGATCTCGGACT+CGG | - | chr3.1:14235124-14235143 | MS.gene50878:intron | 50.0% | |
| GATAGCAGAGGAAATGCGAG+AGG | - | chr3.1:14234929-14234948 | MS.gene50878:intron | 50.0% | |
| GTTTCGATTTCCGTAGGACG+GGG | + | chr3.1:14234790-14234809 | None:intergenic | 50.0% | |
| TCATCTTATGCCCCGTCCTA+CGG | - | chr3.1:14234777-14234796 | MS.gene50878:intron | 50.0% | |
| TCTGCAATCCACCAGAGTCA+CGG | + | chr3.1:14234830-14234849 | None:intergenic | 50.0% | |
| TGGACCAGGATTACCTGCAA+CGG | - | chr3.1:14235090-14235109 | MS.gene50878:intron | 50.0% | |
| ! | AAGGGCATGGCCATTGACAT+GGG | - | chr3.1:14236397-14236416 | MS.gene50878:CDS | 50.0% |
| !! | CAGAAAAAGCGCCAACCACT+TGG | - | chr3.1:14235617-14235636 | MS.gene50878:CDS | 50.0% |
| !! | GGCTCAGAAAGTGCTTTCCT+TGG | + | chr3.1:14235693-14235712 | None:intergenic | 50.0% |
| !!! | GTGGTTGGCGCTTTTTCTGA+CGG | + | chr3.1:14235616-14235635 | None:intergenic | 50.0% |
| !!! | TGGTTGGCGCTTTTTCTGAC+GGG | + | chr3.1:14235615-14235634 | None:intergenic | 50.0% |
| AACGACTTCCGTGACTCTGG+TGG | - | chr3.1:14234819-14234838 | MS.gene50878:intron | 55.0% | |
| CTCTCGTTGCTCCAAGTGGT+TGG | + | chr3.1:14235631-14235650 | None:intergenic | 55.0% | |
| CTTGGGAGAACTGAAGGGCA+TGG | - | chr3.1:14236384-14236403 | MS.gene50878:CDS | 55.0% | |
| TAGTCGTGGATCTCGGCCAT+TGG | + | chr3.1:14235239-14235258 | None:intergenic | 55.0% | |
| TGCAAGCATTTGGCCGTTGC+AGG | + | chr3.1:14235106-14235125 | None:intergenic | 55.0% | |
| TTGGCCGTTGCAGGTAATCC+TGG | + | chr3.1:14235097-14235116 | None:intergenic | 55.0% | |
| ! | CTGATCTCGGACTCGGTCAT+TGG | - | chr3.1:14235131-14235150 | MS.gene50878:intron | 55.0% |
| ! | GAAGGGCATGGCCATTGACA+TGG | - | chr3.1:14236396-14236415 | MS.gene50878:CDS | 55.0% |
| CACGAGGAGGGTTCCCATCT+AGG | + | chr3.1:14235308-14235327 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 14234579 | 14236513 | 14234579 | ID=MS.gene50878 |
| chr3.1 | mRNA | 14234579 | 14236513 | 14234579 | ID=MS.gene50878.t1;Parent=MS.gene50878 |
| chr3.1 | exon | 14236046 | 14236513 | 14236046 | ID=MS.gene50878.t1.exon1;Parent=MS.gene50878.t1 |
| chr3.1 | CDS | 14236046 | 14236513 | 14236046 | ID=cds.MS.gene50878.t1;Parent=MS.gene50878.t1 |
| chr3.1 | exon | 14235577 | 14235670 | 14235577 | ID=MS.gene50878.t1.exon2;Parent=MS.gene50878.t1 |
| chr3.1 | CDS | 14235577 | 14235670 | 14235577 | ID=cds.MS.gene50878.t1;Parent=MS.gene50878.t1 |
| chr3.1 | exon | 14235355 | 14235485 | 14235355 | ID=MS.gene50878.t1.exon3;Parent=MS.gene50878.t1 |
| chr3.1 | CDS | 14235355 | 14235485 | 14235355 | ID=cds.MS.gene50878.t1;Parent=MS.gene50878.t1 |
| chr3.1 | exon | 14234658 | 14234755 | 14234658 | ID=MS.gene50878.t1.exon4;Parent=MS.gene50878.t1 |
| chr3.1 | CDS | 14234658 | 14234755 | 14234658 | ID=cds.MS.gene50878.t1;Parent=MS.gene50878.t1 |
| chr3.1 | exon | 14234579 | 14234594 | 14234579 | ID=MS.gene50878.t1.exon5;Parent=MS.gene50878.t1 |
| chr3.1 | CDS | 14234579 | 14234594 | 14234579 | ID=cds.MS.gene50878.t1;Parent=MS.gene50878.t1 |
| Gene Sequence |
| Protein sequence |
