Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50911.t1 | XP_003602973.1 | 87.1 | 389 | 14 | 1 | 1 | 353 | 1 | 389 | 2.10E-182 | 648.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50911.t1 | Q9S7T8 | 50.8 | 390 | 153 | 4 | 1 | 351 | 1 | 390 | 5.5e-107 | 389.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50911.t1 | G7J5Q8 | 87.1 | 389 | 14 | 1 | 1 | 353 | 1 | 389 | 1.5e-182 | 648.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065945 | MS.gene50911 | PPI |
| MS.gene50911 | MS.gene045585 | PPI |
| MS.gene006610 | MS.gene50911 | PPI |
| MS.gene50911 | MS.gene065944 | PPI |
| MS.gene031697 | MS.gene50911 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50911.t1 | MTR_3g101010 | 87.147 | 389 | 14 | 1 | 1 | 353 | 1 | 389 | 0.0 | 643 |
| MS.gene50911.t1 | MTR_4g045707 | 67.442 | 387 | 86 | 3 | 4 | 353 | 5 | 388 | 0.0 | 508 |
| MS.gene50911.t1 | MTR_3g101030 | 65.829 | 398 | 80 | 5 | 10 | 353 | 34 | 429 | 1.23e-178 | 502 |
| MS.gene50911.t1 | MTR_3g018740 | 64.175 | 388 | 100 | 3 | 1 | 351 | 1 | 386 | 5.72e-169 | 476 |
| MS.gene50911.t1 | MTR_8g027395 | 62.016 | 387 | 107 | 2 | 3 | 353 | 15 | 397 | 2.20e-165 | 467 |
| MS.gene50911.t1 | MTR_8g461160 | 61.757 | 387 | 108 | 3 | 5 | 351 | 6 | 392 | 4.54e-165 | 466 |
| MS.gene50911.t1 | MTR_3g048000 | 61.097 | 383 | 92 | 4 | 6 | 351 | 28 | 390 | 3.12e-159 | 451 |
| MS.gene50911.t1 | MTR_3g101180 | 60.553 | 398 | 110 | 5 | 1 | 351 | 1 | 398 | 7.20e-159 | 451 |
| MS.gene50911.t1 | MTR_8g027420 | 60.207 | 387 | 103 | 3 | 3 | 353 | 4 | 375 | 5.42e-157 | 445 |
| MS.gene50911.t1 | MTR_3g101050 | 66.575 | 365 | 99 | 6 | 9 | 351 | 33 | 396 | 9.69e-157 | 446 |
| MS.gene50911.t1 | MTR_7g451890 | 58.869 | 389 | 120 | 3 | 5 | 353 | 14 | 402 | 2.67e-155 | 442 |
| MS.gene50911.t1 | MTR_2g046030 | 60.102 | 391 | 111 | 4 | 1 | 351 | 1 | 386 | 2.40e-154 | 439 |
| MS.gene50911.t1 | MTR_2g045980 | 59.847 | 391 | 112 | 4 | 1 | 351 | 1 | 386 | 1.09e-153 | 437 |
| MS.gene50911.t1 | MTR_7g047780 | 58.869 | 389 | 120 | 3 | 5 | 353 | 14 | 402 | 3.42e-152 | 434 |
| MS.gene50911.t1 | MTR_7g050750 | 57.289 | 391 | 127 | 3 | 3 | 353 | 6 | 396 | 4.81e-152 | 433 |
| MS.gene50911.t1 | MTR_4g088525 | 61.370 | 365 | 101 | 2 | 24 | 352 | 8 | 368 | 3.64e-151 | 430 |
| MS.gene50911.t1 | MTR_7g050810 | 56.997 | 393 | 121 | 4 | 5 | 353 | 16 | 404 | 6.92e-151 | 431 |
| MS.gene50911.t1 | MTR_3g101130 | 57.069 | 389 | 124 | 4 | 4 | 353 | 5 | 389 | 7.05e-147 | 420 |
| MS.gene50911.t1 | MTR_3g100995 | 78.210 | 257 | 53 | 2 | 97 | 353 | 11 | 264 | 1.34e-144 | 409 |
| MS.gene50911.t1 | MTR_4g088535 | 59.211 | 380 | 99 | 4 | 5 | 348 | 7 | 366 | 3.40e-144 | 413 |
| MS.gene50911.t1 | MTR_3g101200 | 57.104 | 366 | 136 | 5 | 3 | 351 | 29 | 390 | 1.03e-131 | 382 |
| MS.gene50911.t1 | MTR_3g015620 | 55.297 | 387 | 109 | 5 | 5 | 351 | 16 | 378 | 3.20e-128 | 372 |
| MS.gene50911.t1 | MTR_3g102920 | 55.673 | 379 | 92 | 6 | 13 | 351 | 66 | 408 | 5.97e-128 | 373 |
| MS.gene50911.t1 | MTR_3g018747 | 70.000 | 260 | 62 | 3 | 93 | 351 | 9 | 253 | 2.62e-122 | 353 |
| MS.gene50911.t1 | MTR_3g101190 | 47.301 | 389 | 92 | 4 | 1 | 353 | 1 | 312 | 1.24e-109 | 323 |
| MS.gene50911.t1 | MTR_3g015760 | 61.255 | 271 | 101 | 2 | 82 | 351 | 12 | 279 | 4.63e-104 | 307 |
| MS.gene50911.t1 | MTR_3g111160 | 74.286 | 210 | 51 | 2 | 145 | 353 | 13 | 220 | 3.86e-99 | 292 |
| MS.gene50911.t1 | MTR_3g100010 | 54.514 | 288 | 81 | 3 | 20 | 274 | 70 | 340 | 3.74e-95 | 287 |
| MS.gene50911.t1 | MTR_7g050830 | 49.363 | 314 | 90 | 4 | 5 | 260 | 16 | 318 | 1.11e-94 | 285 |
| MS.gene50911.t1 | MTR_3g100520 | 63.514 | 222 | 66 | 3 | 134 | 353 | 1 | 209 | 5.65e-93 | 276 |
| MS.gene50911.t1 | MTR_3g101110 | 51.506 | 332 | 72 | 7 | 3 | 327 | 31 | 280 | 1.68e-91 | 275 |
| MS.gene50911.t1 | MTR_3g099970 | 68.878 | 196 | 44 | 2 | 93 | 288 | 20 | 198 | 1.59e-88 | 265 |
| MS.gene50911.t1 | MTR_2g046410 | 65.534 | 206 | 65 | 2 | 150 | 351 | 144 | 347 | 3.53e-85 | 261 |
| MS.gene50911.t1 | MTR_3g101020 | 68.984 | 187 | 31 | 2 | 167 | 353 | 1 | 160 | 1.53e-81 | 245 |
| MS.gene50911.t1 | MTR_3g114310 | 38.847 | 399 | 185 | 11 | 6 | 353 | 20 | 410 | 4.12e-78 | 246 |
| MS.gene50911.t1 | MTR_3g111150 | 66.013 | 153 | 40 | 1 | 7 | 147 | 1 | 153 | 3.33e-66 | 206 |
| MS.gene50911.t1 | MTR_3g101150 | 66.879 | 157 | 48 | 2 | 199 | 351 | 1 | 157 | 1.64e-65 | 204 |
| MS.gene50911.t1 | MTR_3g102870 | 62.025 | 158 | 60 | 0 | 158 | 315 | 3 | 160 | 2.05e-61 | 194 |
| MS.gene50911.t1 | MTR_3g100990 | 53.383 | 133 | 26 | 1 | 1 | 97 | 1 | 133 | 2.32e-33 | 129 |
| MS.gene50911.t1 | MTR_3g101140 | 63.768 | 69 | 24 | 1 | 286 | 353 | 48 | 116 | 1.03e-18 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50911.t1 | AT1G47710 | 50.769 | 390 | 153 | 4 | 1 | 351 | 1 | 390 | 1.70e-138 | 399 |
| MS.gene50911.t1 | AT1G47710 | 50.769 | 390 | 153 | 4 | 1 | 351 | 28 | 417 | 1.26e-137 | 398 |
| MS.gene50911.t1 | AT3G45220 | 44.250 | 400 | 163 | 8 | 1 | 350 | 1 | 390 | 1.28e-108 | 323 |
| MS.gene50911.t1 | AT2G26390 | 45.663 | 392 | 165 | 10 | 1 | 350 | 1 | 386 | 6.23e-106 | 316 |
| MS.gene50911.t1 | AT2G25240 | 44.444 | 387 | 173 | 9 | 1 | 350 | 1 | 382 | 1.65e-104 | 312 |
| MS.gene50911.t1 | AT1G64030 | 41.071 | 392 | 168 | 6 | 1 | 350 | 1 | 371 | 1.21e-91 | 279 |
| MS.gene50911.t1 | AT2G14540 | 42.967 | 391 | 160 | 7 | 1 | 350 | 29 | 397 | 2.67e-91 | 279 |
| MS.gene50911.t1 | AT1G62170 | 44.304 | 316 | 149 | 4 | 38 | 350 | 140 | 431 | 9.98e-88 | 271 |
| MS.gene50911.t1 | AT2G35580 | 38.624 | 378 | 183 | 8 | 1 | 350 | 15 | 371 | 1.02e-83 | 259 |
| MS.gene50911.t1 | AT1G62170 | 40.115 | 349 | 149 | 5 | 38 | 350 | 140 | 464 | 1.00e-80 | 254 |
| MS.gene50911.t1 | AT1G64010 | 48.165 | 218 | 89 | 4 | 134 | 350 | 1 | 195 | 6.01e-64 | 202 |
| MS.gene50911.t1 | AT1G64010 | 47.291 | 203 | 83 | 4 | 149 | 350 | 2 | 181 | 3.88e-56 | 181 |
| MS.gene50911.t1 | AT1G63280 | 57.391 | 115 | 45 | 2 | 93 | 205 | 8 | 120 | 9.28e-39 | 134 |
| MS.gene50911.t1 | AT1G62160 | 36.652 | 221 | 112 | 4 | 135 | 350 | 21 | 218 | 1.14e-32 | 122 |
| MS.gene50911.t1 | AT1G51330 | 56.842 | 95 | 41 | 0 | 92 | 186 | 30 | 124 | 2.80e-29 | 112 |
Find 81 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGTTGTTGTCTGATTCTT+TGG | 0.218661 | 3.3:-14235107 | None:intergenic |
| GAAAGATTTGTGAAATATAT+TGG | 0.220832 | 3.3:-14237064 | None:intergenic |
| TTATCTTCGCCTTTCTTATA+AGG | 0.266877 | 3.3:-14236772 | None:intergenic |
| CTGCTGCAACTATACTATTA+AGG | 0.304655 | 3.3:+14237127 | MS.gene50911:CDS |
| CCAAAGTTCAATATTTCATT+TGG | 0.319061 | 3.3:+14236934 | MS.gene50911:CDS |
| ATTAGAAACATACCTTGTTC+TGG | 0.319499 | 3.3:-14235416 | None:intergenic |
| AAGTGGAAGTAGGTGACTTT+AGG | 0.323594 | 3.3:+14236908 | MS.gene50911:CDS |
| AATAAACTGCTTCTTCTTGC+TGG | 0.330367 | 3.3:-14236716 | None:intergenic |
| CAGGTGCTCAATCCTCTTAC+CGG | 0.353342 | 3.3:+14237249 | MS.gene50911:CDS |
| GTCATGAAGGGTACCTTGAC+TGG | 0.355173 | 3.3:-14236694 | None:intergenic |
| AGCCCAGGAATTCACATCAT+TGG | 0.367171 | 3.3:-14236506 | None:intergenic |
| ACTGGAACAATCATCTTTGT+TGG | 0.369413 | 3.3:+14237225 | MS.gene50911:CDS |
| ATTAAAGAACTTCTTCCTCT+TGG | 0.370053 | 3.3:+14236550 | MS.gene50911:CDS |
| TTCCTTCCAAATGCAAAAGA+TGG | 0.375787 | 3.3:+14236817 | MS.gene50911:CDS |
| CTTGGTCTTCCTTATAAGAA+AGG | 0.393075 | 3.3:+14236763 | MS.gene50911:CDS |
| AAAAGATGGGTTGGCAGCTT+TGG | 0.400986 | 3.3:+14236831 | MS.gene50911:CDS |
| TTAAAGAACTTCTTCCTCTT+GGG | 0.401972 | 3.3:+14236551 | MS.gene50911:CDS |
| CTTCTTCTTGCTGGTCATGA+AGG | 0.415706 | 3.3:-14236707 | None:intergenic |
| TGACCAATGATGTGAATTCC+TGG | 0.421123 | 3.3:+14236503 | MS.gene50911:CDS |
| AATCAGTGGCGACGATTTGT+TGG | 0.421422 | 3.3:-14235365 | None:intergenic |
| GGAAGGAAGGTTGAAGAGAA+AGG | 0.426729 | 3.3:-14235344 | None:intergenic |
| CTCTCCGACGCTGCTCCCGC+TGG | 0.441308 | 3.3:+14235276 | MS.gene50911:CDS |
| CTCTTTCGTCGATGGTATGT+GGG | 0.442588 | 3.3:+14235311 | MS.gene50911:CDS |
| AACAATCATCTTTGTTGGAC+AGG | 0.442686 | 3.3:+14237230 | MS.gene50911:CDS |
| TCTCTAATCATAAATAAGAA+AGG | 0.443816 | 3.3:-14237195 | None:intergenic |
| TCTCTTTCGTCGATGGTATG+TGG | 0.444249 | 3.3:+14235310 | MS.gene50911:CDS |
| CCAAATGAAATATTGAACTT+TGG | 0.444637 | 3.3:-14236934 | None:intergenic |
| CAAGCTTCCTCTTGATAAAG+TGG | 0.447424 | 3.3:+14236891 | MS.gene50911:CDS |
| CGCTGAGTGATACGTTGGTT+TGG | 0.454352 | 3.3:-14235066 | None:intergenic |
| TTCATTGAAGTAAATGAAGA+AGG | 0.457204 | 3.3:+14237084 | MS.gene50911:CDS |
| AGATAAGCGTAAATTCACTA+TGG | 0.458657 | 3.3:+14236789 | MS.gene50911:CDS |
| GGCAGCTTTGGTTGAAAAGG+TGG | 0.473464 | 3.3:+14236843 | MS.gene50911:CDS |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.477583 | 3.3:-14235343 | None:intergenic |
| ATGATTAGAGAAGATTTGAC+TGG | 0.486501 | 3.3:+14237207 | MS.gene50911:CDS |
| TCCTTCCAAATGCAAAAGAT+GGG | 0.493850 | 3.3:+14236818 | MS.gene50911:CDS |
| CCTCTCCTCTCTTTCGTCGA+TGG | 0.494047 | 3.3:+14235303 | MS.gene50911:CDS |
| GTCAGACCTCCGCCAGAGAA+AGG | 0.495812 | 3.3:-14237000 | None:intergenic |
| GTTGGCAGCTTTGGTTGAAA+AGG | 0.497725 | 3.3:+14236840 | MS.gene50911:CDS |
| CTCTAATCATAAATAAGAAA+GGG | 0.502614 | 3.3:-14237194 | None:intergenic |
| TTCTTCTTGCTGGTCATGAA+GGG | 0.505436 | 3.3:-14236706 | None:intergenic |
| GCGACGATTTGTTGGAAGGA+AGG | 0.507919 | 3.3:-14235357 | None:intergenic |
| GTGCATTGGCAAAGATGAGC+CGG | 0.510572 | 3.3:-14236591 | None:intergenic |
| TGAAACTTCTGATATGCTAA+AGG | 0.511157 | 3.3:+14236960 | MS.gene50911:CDS |
| TCCTTTGAAGTATAGTGCAT+TGG | 0.511249 | 3.3:-14236605 | None:intergenic |
| GAGAGGAGAGGACCGCCAGC+GGG | 0.525107 | 3.3:-14235291 | None:intergenic |
| ACCGCCAGCGGGAGCAGCGT+CGG | 0.532784 | 3.3:-14235280 | None:intergenic |
| TCCAAATGCAAAAGATGGGT+TGG | 0.533322 | 3.3:+14236822 | MS.gene50911:CDS |
| TGACTGGGCTACCATTCAAA+AGG | 0.534936 | 3.3:-14236678 | None:intergenic |
| AGAGAGGAGAGGACCGCCAG+CGG | 0.542266 | 3.3:-14235292 | None:intergenic |
| TGGCGGAGGTCTGACAAAGA+TGG | 0.550585 | 3.3:+14237008 | MS.gene50911:CDS |
| GCCAATGCACTATACTTCAA+AGG | 0.552753 | 3.3:+14236604 | MS.gene50911:CDS |
| TTCCGTTGATTTCCAGAACA+AGG | 0.553793 | 3.3:+14235404 | MS.gene50911:CDS |
| TCTGATATGCTAAAGGAGCT+AGG | 0.556026 | 3.3:+14236967 | MS.gene50911:CDS |
| AGTGGCGACGATTTGTTGGA+AGG | 0.557837 | 3.3:-14235361 | None:intergenic |
| CCTACTTCCACTTTATCAAG+AGG | 0.564451 | 3.3:-14236898 | None:intergenic |
| TGTGGTTCCCTCGGATCACC+CGG | 0.564806 | 3.3:-14237268 | None:intergenic |
| CCTCTTGATAAAGTGGAAGT+AGG | 0.566916 | 3.3:+14236898 | MS.gene50911:CDS |
| GAGTGATACGTTGGTTTGGT+TGG | 0.571674 | 3.3:-14235062 | None:intergenic |
| TGCATTGGCAAAGATGAGCC+GGG | 0.576228 | 3.3:-14236590 | None:intergenic |
| TCCGACGCTGCTCCCGCTGG+CGG | 0.580325 | 3.3:+14235279 | MS.gene50911:CDS |
| AGCAGCGTCGGAGAGGATGA+CGG | 0.586515 | 3.3:-14235268 | None:intergenic |
| TGCGACGCTGAGTGATACGT+TGG | 0.588549 | 3.3:-14235071 | None:intergenic |
| CAAAGCTGCTTTAAAATCAG+TGG | 0.588821 | 3.3:-14235379 | None:intergenic |
| TTTGAATGGTAGCCCAGTCA+AGG | 0.589815 | 3.3:+14236681 | MS.gene50911:CDS |
| TAGTCGAGGTGGAATACTCA+TGG | 0.595090 | 3.3:-14237154 | None:intergenic |
| AGCACAACCTGGAGTGAGAG+TGG | 0.595633 | 3.3:-14235139 | None:intergenic |
| TCATGAAGGGTACCTTGACT+GGG | 0.597332 | 3.3:-14236693 | None:intergenic |
| CACTATACTTCAAAGGAGCG+TGG | 0.606664 | 3.3:+14236611 | MS.gene50911:CDS |
| GAAATATATTGGAAACACAA+AGG | 0.608551 | 3.3:-14237053 | None:intergenic |
| GGTCAGTCAACAACGCAACC+CGG | 0.611605 | 3.3:+14236572 | MS.gene50911:CDS |
| AGGTGCTCAATCCTCTTACC+GGG | 0.612837 | 3.3:+14237250 | MS.gene50911:CDS |
| TACCTTGTTCTGGAAATCAA+CGG | 0.617645 | 3.3:-14235406 | None:intergenic |
| ACATACCATCGACGAAAGAG+AGG | 0.632681 | 3.3:-14235308 | None:intergenic |
| GACCAATGATGTGAATTCCT+GGG | 0.632822 | 3.3:+14236504 | MS.gene50911:CDS |
| TAATCATAAATAAGAAAGGG+TGG | 0.640706 | 3.3:-14237191 | None:intergenic |
| CAGCGGGAGCAGCGTCGGAG+AGG | 0.640814 | 3.3:-14235275 | None:intergenic |
| AGAAGGCACTGAAGCTGCTG+CGG | 0.641571 | 3.3:+14237101 | MS.gene50911:CDS |
| GCTACAAAGTCTAGTCGAGG+TGG | 0.662510 | 3.3:-14237165 | None:intergenic |
| TCAGCTACAAAGTCTAGTCG+AGG | 0.690824 | 3.3:-14237168 | None:intergenic |
| CCATCGACGAAAGAGAGGAG+AGG | 0.718568 | 3.3:-14235303 | None:intergenic |
| GCGTTGTTGACTGACCCAAG+AGG | 0.757899 | 3.3:-14236565 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGATTTTTAAATTTGATA+TGG | + | chr3.3:14236462-14236481 | MS.gene50911:intron | 10.0% |
| !! | GATTTATTTGAATAACATAA+AGG | - | chr3.3:14236052-14236071 | None:intergenic | 15.0% |
| !!! | ATAAGCTATTTTTATAGTAA+AGG | + | chr3.3:14235571-14235590 | MS.gene50911:intron | 15.0% |
| !!! | TAAATTTGATATGGTTTTAA+AGG | + | chr3.3:14236471-14236490 | MS.gene50911:intron | 15.0% |
| !! | AAAATGGAAAAACATTCTAA+TGG | - | chr3.3:14235943-14235962 | None:intergenic | 20.0% |
| !! | CTCTAATCATAAATAAGAAA+GGG | - | chr3.3:14237197-14237216 | None:intergenic | 20.0% |
| !! | GAAAGATTTGTGAAATATAT+TGG | - | chr3.3:14237067-14237086 | None:intergenic | 20.0% |
| !! | TCTCTAATCATAAATAAGAA+AGG | - | chr3.3:14237198-14237217 | None:intergenic | 20.0% |
| !! | TTATAAGCTTATGAATGAAA+AGG | - | chr3.3:14235879-14235898 | None:intergenic | 20.0% |
| !!! | AGAAGAATTTAACATTTTGT+TGG | - | chr3.3:14236398-14236417 | None:intergenic | 20.0% |
| !!! | TTAAGATTTAGGTTTTGTTT+GGG | + | chr3.3:14235501-14235520 | MS.gene50911:intron | 20.0% |
| !!! | TTTAAGATTTAGGTTTTGTT+TGG | + | chr3.3:14235500-14235519 | MS.gene50911:intron | 20.0% |
| ! | CCAAAGTTCAATATTTCATT+TGG | + | chr3.3:14236934-14236953 | MS.gene50911:CDS | 25.0% |
| ! | CCAAATGAAATATTGAACTT+TGG | - | chr3.3:14236937-14236956 | None:intergenic | 25.0% |
| ! | GAAATATATTGGAAACACAA+AGG | - | chr3.3:14237056-14237075 | None:intergenic | 25.0% |
| ! | TAATCATAAATAAGAAAGGG+TGG | - | chr3.3:14237194-14237213 | None:intergenic | 25.0% |
| ! | TTAGTAGATAAGCTCAAATA+AGG | + | chr3.3:14235743-14235762 | MS.gene50911:intron | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.3:14237084-14237103 | MS.gene50911:CDS | 25.0% |
| ! | TTGATCAAAACAACTTTACT+AGG | + | chr3.3:14236311-14236330 | MS.gene50911:intron | 25.0% |
| !!! | AATGCTAAGCTTTAAGATTT+AGG | + | chr3.3:14235490-14235509 | MS.gene50911:intron | 25.0% |
| !!! | GTCGTTTTTATAAGCTATAT+TGG | + | chr3.3:14235631-14235650 | MS.gene50911:intron | 25.0% |
| !!! | TTTGATGGTTTTAAAGTTCT+TGG | + | chr3.3:14236745-14236764 | MS.gene50911:CDS | 25.0% |
| AATGTTGTTGTCTGATTCTT+TGG | - | chr3.3:14235110-14235129 | None:intergenic | 30.0% | |
| AGATAAGCGTAAATTCACTA+TGG | + | chr3.3:14236789-14236808 | MS.gene50911:CDS | 30.0% | |
| ATAAGCTATCATCTATAAGC+TGG | + | chr3.3:14235895-14235914 | MS.gene50911:intron | 30.0% | |
| ATGATTAGAGAAGATTTGAC+TGG | + | chr3.3:14237207-14237226 | MS.gene50911:CDS | 30.0% | |
| ATTAAAGAACTTCTTCCTCT+TGG | + | chr3.3:14236550-14236569 | MS.gene50911:CDS | 30.0% | |
| ATTAGAAACATACCTTGTTC+TGG | - | chr3.3:14235419-14235438 | None:intergenic | 30.0% | |
| TAACATAAAGGTTTGTCACA+TGG | - | chr3.3:14236040-14236059 | None:intergenic | 30.0% | |
| TAAGTGTGCATTAAGCAAAA+AGG | + | chr3.3:14236099-14236118 | MS.gene50911:intron | 30.0% | |
| TACCACAACAAAAATTGAAG+TGG | - | chr3.3:14236196-14236215 | None:intergenic | 30.0% | |
| TACCACAGCTTTCATTAAAA+TGG | - | chr3.3:14235959-14235978 | None:intergenic | 30.0% | |
| TAGATACTAGAAAACAGCAA+AGG | - | chr3.3:14236343-14236362 | None:intergenic | 30.0% | |
| TGAAACTTCTGATATGCTAA+AGG | + | chr3.3:14236960-14236979 | MS.gene50911:CDS | 30.0% | |
| TTAAAGAACTTCTTCCTCTT+GGG | + | chr3.3:14236551-14236570 | MS.gene50911:CDS | 30.0% | |
| TTATCTTCGCCTTTCTTATA+AGG | - | chr3.3:14236775-14236794 | None:intergenic | 30.0% | |
| ! | CAGTTTATTAGAGCTTTTGA+TGG | + | chr3.3:14236730-14236749 | MS.gene50911:CDS | 30.0% |
| ! | TACGAATTTCACCTTTTGAA+TGG | + | chr3.3:14236667-14236686 | MS.gene50911:CDS | 30.0% |
| !! | AATTTTTGTTGTGGTAAGGA+GGG | + | chr3.3:14236200-14236219 | MS.gene50911:intron | 30.0% |
| !! | CTTCAATTTTTGTTGTGGTA+AGG | + | chr3.3:14236196-14236215 | MS.gene50911:intron | 30.0% |
| !! | TTCCATTTTAATGAAAGCTG+TGG | + | chr3.3:14235954-14235973 | MS.gene50911:intron | 30.0% |
| AAAGTAGTTGAGATGATCAG+TGG | - | chr3.3:14235232-14235251 | None:intergenic | 35.0% | |
| AACAATCATCTTTGTTGGAC+AGG | + | chr3.3:14237230-14237249 | MS.gene50911:CDS | 35.0% | |
| AAGGAAAGACAAACAGGTAT+AGG | - | chr3.3:14236077-14236096 | None:intergenic | 35.0% | |
| AATAAACTGCTTCTTCTTGC+TGG | - | chr3.3:14236719-14236738 | None:intergenic | 35.0% | |
| ACTGGAACAATCATCTTTGT+TGG | + | chr3.3:14237225-14237244 | MS.gene50911:CDS | 35.0% | |
| CTGCTGCAACTATACTATTA+AGG | + | chr3.3:14237127-14237146 | MS.gene50911:CDS | 35.0% | |
| GTCAGATAGTTGTATGCTAA+AGG | - | chr3.3:14236241-14236260 | None:intergenic | 35.0% | |
| TCCTTCCAAATGCAAAAGAT+GGG | + | chr3.3:14236818-14236837 | MS.gene50911:CDS | 35.0% | |
| TTCCTTCCAAATGCAAAAGA+TGG | + | chr3.3:14236817-14236836 | MS.gene50911:CDS | 35.0% | |
| TTCTAATGGTCTGTTTGTCA+AGG | - | chr3.3:14235929-14235948 | None:intergenic | 35.0% | |
| ! | AGCCACTTCAATTTTTGTTG+TGG | + | chr3.3:14236191-14236210 | MS.gene50911:intron | 35.0% |
| ! | ATTGAAAAGTTCTTGCTGTG+TGG | - | chr3.3:14235194-14235213 | None:intergenic | 35.0% |
| ! | CTTGGTCTTCCTTATAAGAA+AGG | + | chr3.3:14236763-14236782 | MS.gene50911:CDS | 35.0% |
| ! | TTGAAAAGTTCTTGCTGTGT+GGG | - | chr3.3:14235193-14235212 | None:intergenic | 35.0% |
| !! | CAAAGCTGCTTTAAAATCAG+TGG | - | chr3.3:14235382-14235401 | None:intergenic | 35.0% |
| !! | CAATTTTTGTTGTGGTAAGG+AGG | + | chr3.3:14236199-14236218 | MS.gene50911:intron | 35.0% |
| !! | TACCTTGTTCTGGAAATCAA+CGG | - | chr3.3:14235409-14235428 | None:intergenic | 35.0% |
| !! | TCCTTTGAAGTATAGTGCAT+TGG | - | chr3.3:14236608-14236627 | None:intergenic | 35.0% |
| !!! | GCTAACTGTCATTTTCTCAA+GGG | - | chr3.3:14235848-14235867 | None:intergenic | 35.0% |
| !!! | TGCTAACTGTCATTTTCTCA+AGG | - | chr3.3:14235849-14235868 | None:intergenic | 35.0% |
| AAGTGGAAGTAGGTGACTTT+AGG | + | chr3.3:14236908-14236927 | MS.gene50911:CDS | 40.0% | |
| CAAGCTTCCTCTTGATAAAG+TGG | + | chr3.3:14236891-14236910 | MS.gene50911:CDS | 40.0% | |
| CCTACTTCCACTTTATCAAG+AGG | - | chr3.3:14236901-14236920 | None:intergenic | 40.0% | |
| CCTCTTGATAAAGTGGAAGT+AGG | + | chr3.3:14236898-14236917 | MS.gene50911:CDS | 40.0% | |
| CTTACGAAGGAAAGACAAAC+AGG | - | chr3.3:14236083-14236102 | None:intergenic | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.3:14235346-14235365 | None:intergenic | 40.0% | |
| GACCAATGATGTGAATTCCT+GGG | + | chr3.3:14236504-14236523 | MS.gene50911:CDS | 40.0% | |
| GCCAATGCACTATACTTCAA+AGG | + | chr3.3:14236604-14236623 | MS.gene50911:CDS | 40.0% | |
| TCCAAATGCAAAAGATGGGT+TGG | + | chr3.3:14236822-14236841 | MS.gene50911:CDS | 40.0% | |
| TCTGATATGCTAAAGGAGCT+AGG | + | chr3.3:14236967-14236986 | MS.gene50911:CDS | 40.0% | |
| TGACCAATGATGTGAATTCC+TGG | + | chr3.3:14236503-14236522 | MS.gene50911:CDS | 40.0% | |
| TGCTTAATGCACACTTACGA+AGG | - | chr3.3:14236096-14236115 | None:intergenic | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | + | chr3.3:14236523-14236542 | MS.gene50911:CDS | 40.0% | |
| TTCTTCTTGCTGGTCATGAA+GGG | - | chr3.3:14236709-14236728 | None:intergenic | 40.0% | |
| ! | ACCCATCTTTTGCATTTGGA+AGG | - | chr3.3:14236822-14236841 | None:intergenic | 40.0% |
| ! | GATGATCAGTGGATTTGGAT+TGG | - | chr3.3:14235221-14235240 | None:intergenic | 40.0% |
| ! | GTTGAGATGATCAGTGGATT+TGG | - | chr3.3:14235226-14235245 | None:intergenic | 40.0% |
| !! | GGTGTGTTTTTACCTTTCTC+TGG | + | chr3.3:14236988-14237007 | MS.gene50911:CDS | 40.0% |
| !! | GTGTTTTTACCTTTCTCTGG+CGG | + | chr3.3:14236991-14237010 | MS.gene50911:CDS | 40.0% |
| !! | TTCCGTTGATTTCCAGAACA+AGG | + | chr3.3:14235404-14235423 | MS.gene50911:CDS | 40.0% |
| !!! | ATTTGTCTCTTTTTCAGCCC+AGG | - | chr3.3:14236524-14236543 | None:intergenic | 40.0% |
| AATCAGTGGCGACGATTTGT+TGG | - | chr3.3:14235368-14235387 | None:intergenic | 45.0% | |
| ACATACCATCGACGAAAGAG+AGG | - | chr3.3:14235311-14235330 | None:intergenic | 45.0% | |
| AGCCCAGGAATTCACATCAT+TGG | - | chr3.3:14236509-14236528 | None:intergenic | 45.0% | |
| CACTATACTTCAAAGGAGCG+TGG | + | chr3.3:14236611-14236630 | MS.gene50911:CDS | 45.0% | |
| CTCTTTCGTCGATGGTATGT+GGG | + | chr3.3:14235311-14235330 | MS.gene50911:CDS | 45.0% | |
| CTTCTTCTTGCTGGTCATGA+AGG | - | chr3.3:14236710-14236729 | None:intergenic | 45.0% | |
| GGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.3:14235347-14235366 | None:intergenic | 45.0% | |
| TAGTCGAGGTGGAATACTCA+TGG | - | chr3.3:14237157-14237176 | None:intergenic | 45.0% | |
| TCAGCTACAAAGTCTAGTCG+AGG | - | chr3.3:14237171-14237190 | None:intergenic | 45.0% | |
| TCTCTTTCGTCGATGGTATG+TGG | + | chr3.3:14235310-14235329 | MS.gene50911:CDS | 45.0% | |
| TCTGAAGAGCCATTGTAGCA+GGG | - | chr3.3:14236159-14236178 | None:intergenic | 45.0% | |
| TCTGCAATTCCCTGCTACAA+TGG | + | chr3.3:14236147-14236166 | MS.gene50911:intron | 45.0% | |
| TGACTGGGCTACCATTCAAA+AGG | - | chr3.3:14236681-14236700 | None:intergenic | 45.0% | |
| TTTGAATGGTAGCCCAGTCA+AGG | + | chr3.3:14236681-14236700 | MS.gene50911:CDS | 45.0% | |
| ! | GATCAGTGGATTTGGATTGG+AGG | - | chr3.3:14235218-14235237 | None:intergenic | 45.0% |
| ! | GCCAACCCATCTTTTGCATT+TGG | - | chr3.3:14236826-14236845 | None:intergenic | 45.0% |
| ! | GTTGGCAGCTTTGGTTGAAA+AGG | + | chr3.3:14236840-14236859 | MS.gene50911:CDS | 45.0% |
| ! | TTTTTACCTTTCTCTGGCGG+AGG | + | chr3.3:14236994-14237013 | MS.gene50911:CDS | 45.0% |
| !! | AAAAGATGGGTTGGCAGCTT+TGG | + | chr3.3:14236831-14236850 | MS.gene50911:CDS | 45.0% |
| !! | ATAATCGCTTCTGGTTCCGA+GGG | + | chr3.3:14235166-14235185 | MS.gene50911:intron | 45.0% |
| !! | GAGTGATACGTTGGTTTGGT+TGG | - | chr3.3:14235065-14235084 | None:intergenic | 45.0% |
| !! | TCATGAAGGGTACCTTGACT+GGG | - | chr3.3:14236696-14236715 | None:intergenic | 45.0% |
| AGGTGCTCAATCCTCTTACC+GGG | + | chr3.3:14237250-14237269 | MS.gene50911:CDS | 50.0% | |
| CAGGTGCTCAATCCTCTTAC+CGG | + | chr3.3:14237249-14237268 | MS.gene50911:CDS | 50.0% | |
| CGATTATGCTGAGCACAACC+TGG | - | chr3.3:14235153-14235172 | None:intergenic | 50.0% | |
| GCTACAAAGTCTAGTCGAGG+TGG | - | chr3.3:14237168-14237187 | None:intergenic | 50.0% | |
| GTGCTCAGCATAATCGCTTC+TGG | + | chr3.3:14235157-14235176 | MS.gene50911:intron | 50.0% | |
| ! | CGCTGAGTGATACGTTGGTT+TGG | - | chr3.3:14235069-14235088 | None:intergenic | 50.0% |
| ! | CTCTGAAGAGCCATTGTAGC+AGG | - | chr3.3:14236160-14236179 | None:intergenic | 50.0% |
| ! | GGCAGCTTTGGTTGAAAAGG+TGG | + | chr3.3:14236843-14236862 | MS.gene50911:CDS | 50.0% |
| ! | GTGCATTGGCAAAGATGAGC+CGG | - | chr3.3:14236594-14236613 | None:intergenic | 50.0% |
| ! | TGCATTGGCAAAGATGAGCC+GGG | - | chr3.3:14236593-14236612 | None:intergenic | 50.0% |
| !! | AGTGGCGACGATTTGTTGGA+AGG | - | chr3.3:14235364-14235383 | None:intergenic | 50.0% |
| !! | CATAATCGCTTCTGGTTCCG+AGG | + | chr3.3:14235165-14235184 | MS.gene50911:intron | 50.0% |
| !! | GCGACGATTTGTTGGAAGGA+AGG | - | chr3.3:14235360-14235379 | None:intergenic | 50.0% |
| !! | GTCATGAAGGGTACCTTGAC+TGG | - | chr3.3:14236697-14236716 | None:intergenic | 50.0% |
| AGCACAACCTGGAGTGAGAG+TGG | - | chr3.3:14235142-14235161 | None:intergenic | 55.0% | |
| CCATCGACGAAAGAGAGGAG+AGG | - | chr3.3:14235306-14235325 | None:intergenic | 55.0% | |
| CCTCTCCTCTCTTTCGTCGA+TGG | + | chr3.3:14235303-14235322 | MS.gene50911:CDS | 55.0% | |
| GGTCAGTCAACAACGCAACC+CGG | + | chr3.3:14236572-14236591 | MS.gene50911:CDS | 55.0% | |
| TGCGACGCTGAGTGATACGT+TGG | - | chr3.3:14235074-14235093 | None:intergenic | 55.0% | |
| TGGCGGAGGTCTGACAAAGA+TGG | + | chr3.3:14237008-14237027 | MS.gene50911:CDS | 55.0% | |
| ! | GCGTTGTTGACTGACCCAAG+AGG | - | chr3.3:14236568-14236587 | None:intergenic | 55.0% |
| ! | GTTTTCGCCACTCTCACTCC+AGG | + | chr3.3:14235132-14235151 | MS.gene50911:CDS | 55.0% |
| ! | TTCTTGCTGTGTGGGACCCT+CGG | - | chr3.3:14235185-14235204 | None:intergenic | 55.0% |
| !! | AGAAGGCACTGAAGCTGCTG+CGG | + | chr3.3:14237101-14237120 | MS.gene50911:CDS | 55.0% |
| GTCAGACCTCCGCCAGAGAA+AGG | - | chr3.3:14237003-14237022 | None:intergenic | 60.0% | |
| ! | AGCAGCGTCGGAGAGGATGA+CGG | - | chr3.3:14235271-14235290 | None:intergenic | 60.0% |
| AGAGAGGAGAGGACCGCCAG+CGG | - | chr3.3:14235295-14235314 | None:intergenic | 65.0% | |
| GAGAGGAGAGGACCGCCAGC+GGG | - | chr3.3:14235294-14235313 | None:intergenic | 70.0% | |
| ACCGCCAGCGGGAGCAGCGT+CGG | - | chr3.3:14235283-14235302 | None:intergenic | 75.0% | |
| CTCTCCGACGCTGCTCCCGC+TGG | + | chr3.3:14235276-14235295 | MS.gene50911:CDS | 75.0% | |
| TCCGACGCTGCTCCCGCTGG+CGG | + | chr3.3:14235279-14235298 | MS.gene50911:CDS | 75.0% | |
| ! | CAGCGGGAGCAGCGTCGGAG+AGG | - | chr3.3:14235278-14235297 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 14235040 | 14237275 | 14235040 | ID=MS.gene50911 |
| chr3.3 | mRNA | 14235040 | 14237275 | 14235040 | ID=MS.gene50911.t1;Parent=MS.gene50911 |
| chr3.3 | exon | 14235040 | 14235153 | 14235040 | ID=MS.gene50911.t1.exon1;Parent=MS.gene50911.t1 |
| chr3.3 | CDS | 14235040 | 14235153 | 14235040 | ID=cds.MS.gene50911.t1;Parent=MS.gene50911.t1 |
| chr3.3 | exon | 14235261 | 14235425 | 14235261 | ID=MS.gene50911.t1.exon2;Parent=MS.gene50911.t1 |
| chr3.3 | CDS | 14235261 | 14235425 | 14235261 | ID=cds.MS.gene50911.t1;Parent=MS.gene50911.t1 |
| chr3.3 | exon | 14236493 | 14237275 | 14236493 | ID=MS.gene50911.t1.exon3;Parent=MS.gene50911.t1 |
| chr3.3 | CDS | 14236493 | 14237275 | 14236493 | ID=cds.MS.gene50911.t1;Parent=MS.gene50911.t1 |
| Gene Sequence |
| Protein sequence |
