AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene51707

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51707.t1 MTR_3g010780 89.895 574 25 2 1 541 1 574 0.0 1045
MS.gene51707.t1 MTR_8g042900 75.391 512 122 3 33 541 71 581 0.0 810
MS.gene51707.t1 MTR_8g023150 47.500 520 245 11 37 541 76 582 1.88e-154 454
MS.gene51707.t1 MTR_1g008140 43.369 558 286 10 10 541 54 607 3.12e-152 449
MS.gene51707.t1 MTR_3g091380 42.569 545 291 8 16 541 56 597 3.93e-143 426
MS.gene51707.t1 MTR_4g087980 44.583 480 241 7 71 541 53 516 5.92e-140 414
MS.gene51707.t1 MTR_1g083510 40.250 559 292 11 15 539 31 581 4.28e-138 412
MS.gene51707.t1 MTR_7g050950 42.495 513 270 9 41 541 54 553 1.08e-137 410
MS.gene51707.t1 MTR_8g023310 43.130 524 268 9 38 537 68 585 3.67e-137 410
MS.gene51707.t1 MTR_7g108905 41.765 510 283 6 39 537 46 552 2.54e-135 404
MS.gene51707.t1 MTR_7g112590 39.051 548 300 10 19 537 37 579 3.39e-134 402
MS.gene51707.t1 MTR_7g112580 43.388 484 243 6 75 541 73 542 4.58e-134 400
MS.gene51707.t1 MTR_4g025730 44.553 514 246 11 36 541 27 509 4.96e-134 399
MS.gene51707.t1 MTR_8g104655 47.391 460 211 8 101 541 94 541 1.96e-133 399
MS.gene51707.t1 MTR_7g050870 43.249 511 262 10 41 537 54 550 8.36e-133 397
MS.gene51707.t1 MTR_1g083470 39.925 536 299 11 23 541 41 570 1.26e-131 395
MS.gene51707.t1 MTR_1g083500 39.925 536 299 11 23 541 41 570 1.26e-131 395
MS.gene51707.t1 MTR_1g086190 40.525 533 291 10 24 537 34 559 1.51e-131 395
MS.gene51707.t1 MTR_1g083520 42.226 521 270 10 33 539 23 526 4.06e-130 390
MS.gene51707.t1 MTR_8g104645 53.868 349 148 5 202 541 28 372 5.07e-129 381
MS.gene51707.t1 MTR_4g087970 42.511 454 233 8 102 541 78 517 1.04e-128 386
MS.gene51707.t1 MTR_4g005170 38.951 534 307 8 23 541 46 575 2.03e-128 389
MS.gene51707.t1 MTR_4g025690 44.075 481 239 9 66 541 58 513 3.52e-128 384
MS.gene51707.t1 MTR_2g044880 42.889 450 238 6 101 541 86 525 5.44e-128 384
MS.gene51707.t1 MTR_4g005180 38.764 534 308 8 23 541 28 557 2.48e-127 384
MS.gene51707.t1 MTR_1g088020 41.495 535 273 11 39 541 29 555 2.70e-127 384
MS.gene51707.t1 MTR_1g083490 38.764 534 308 8 23 541 46 575 3.58e-127 384
MS.gene51707.t1 MTR_4g124550 40.891 516 280 10 38 536 81 588 8.67e-127 384
MS.gene51707.t1 MTR_1g054880 44.658 468 227 10 104 541 93 558 4.58e-126 380
MS.gene51707.t1 MTR_7g050980 39.844 512 284 9 42 541 56 555 5.17e-125 377
MS.gene51707.t1 MTR_1g088225 41.121 535 273 12 39 541 29 553 1.16e-123 374
MS.gene51707.t1 MTR_7g108875 42.285 499 258 10 72 541 67 564 5.66e-123 373
MS.gene51707.t1 MTR_2g044810 39.766 513 283 8 37 541 40 534 4.20e-122 369
MS.gene51707.t1 MTR_4g025670 42.680 485 237 10 75 541 28 489 1.20e-121 367
MS.gene51707.t1 MTR_2g436040 37.182 511 299 8 38 537 43 542 4.20e-121 369
MS.gene51707.t1 MTR_7g108900 40.260 539 265 14 39 537 35 556 6.10e-121 367
MS.gene51707.t1 MTR_4g124520 39.925 531 270 11 27 541 24 521 7.74e-121 365
MS.gene51707.t1 MTR_1g086210 41.772 474 244 9 91 537 97 565 4.33e-120 365
MS.gene51707.t1 MTR_3g010770 39.595 543 283 7 40 541 37 575 1.28e-118 362
MS.gene51707.t1 MTR_7g108890 40.485 536 276 14 39 541 37 562 3.86e-118 360
MS.gene51707.t1 MTR_4g120280 38.330 527 296 9 32 537 50 568 1.52e-117 359
MS.gene51707.t1 MTR_8g042910 39.668 542 280 12 41 541 77 612 2.67e-117 360
MS.gene51707.t1 MTR_2g436050 36.648 543 311 9 14 537 32 560 4.97e-116 355
MS.gene51707.t1 MTR_3g033690 42.946 482 246 11 68 541 66 526 1.10e-115 353
MS.gene51707.t1 MTR_4g120290 36.832 543 306 10 16 537 42 568 1.44e-115 354
MS.gene51707.t1 MTR_7g053360 42.531 482 249 10 68 541 66 527 4.80e-115 351
MS.gene51707.t1 MTR_3g008640 44.318 440 223 9 110 541 102 527 4.60e-114 348
MS.gene51707.t1 MTR_3g008720 44.318 440 223 9 110 541 102 527 1.99e-113 347
MS.gene51707.t1 MTR_3g008700 43.864 440 225 9 110 541 102 527 2.19e-113 347
MS.gene51707.t1 MTR_4g035980 42.478 452 234 10 103 541 101 539 1.64e-112 345
MS.gene51707.t1 MTR_7g110440 38.740 524 275 11 38 526 42 554 5.30e-110 340
MS.gene51707.t1 MTR_7g110490 39.205 528 267 12 37 525 41 553 2.71e-107 333
MS.gene51707.t1 MTR_7g110510 39.205 528 267 12 37 525 41 553 2.71e-107 333
MS.gene51707.t1 MTR_8g104580 41.739 460 204 10 101 541 86 500 7.94e-104 321
MS.gene51707.t1 MTR_7g110560 39.468 451 246 9 105 537 104 545 1.09e-103 323
MS.gene51707.t1 MTR_0458s0030 55.769 260 111 1 286 541 55 314 1.56e-102 311
MS.gene51707.t1 MTR_1g088040 55.769 260 111 1 286 541 55 314 1.56e-102 311
MS.gene51707.t1 MTR_2g044660 34.477 554 297 9 41 536 82 627 1.09e-99 315
MS.gene51707.t1 MTR_7g110420 36.685 537 293 14 38 534 42 571 1.93e-94 300
MS.gene51707.t1 MTR_0618s0020 56.388 227 94 2 320 541 2 228 1.43e-88 272
MS.gene51707.t1 MTR_7g110430 34.351 524 264 12 38 526 42 520 9.05e-87 278
MS.gene51707.t1 MTR_2g044810 50.199 251 121 1 295 541 215 465 4.22e-86 274
MS.gene51707.t1 MTR_8g093460 33.398 515 310 13 38 533 43 543 5.09e-83 269
MS.gene51707.t1 MTR_8g088610 41.867 332 180 7 214 537 46 372 5.15e-83 263
MS.gene51707.t1 MTR_5g083620 40.922 347 188 9 202 537 12 352 7.51e-83 262
MS.gene51707.t1 MTR_3g095920 36.342 421 225 12 141 530 145 553 2.31e-76 251
MS.gene51707.t1 MTR_0458s0010 33.271 532 284 15 39 541 29 518 4.44e-75 247
MS.gene51707.t1 MTR_7g107180 38.994 318 177 7 230 541 1 307 9.39e-71 229
MS.gene51707.t1 MTR_2g105560 36.741 313 179 7 235 541 40 339 3.98e-65 215
MS.gene51707.t1 MTR_7g111560 30.144 554 317 18 15 539 42 554 2.35e-63 217
MS.gene51707.t1 MTR_2g039530 39.871 311 143 12 214 506 32 316 1.32e-54 187
MS.gene51707.t1 MTR_6g012800 33.667 300 178 6 236 524 6 295 3.35e-50 175
MS.gene51707.t1 MTR_6g024165 35.621 306 174 8 236 530 41 334 9.13e-49 172
MS.gene51707.t1 MTR_6g088810 34.899 298 173 5 244 530 90 377 1.16e-48 173
MS.gene51707.t1 MTR_7g092780 33.115 305 187 5 236 530 90 387 1.03e-47 171
MS.gene51707.t1 MTR_6g042660 35.401 274 158 7 236 504 37 296 1.24e-47 169
MS.gene51707.t1 MTR_8g102380 34.000 300 175 5 244 530 88 377 2.61e-46 167
MS.gene51707.t1 MTR_1g033050 33.007 306 187 6 232 530 14 308 5.99e-46 164
MS.gene51707.t1 MTR_7g011530 32.550 298 180 6 238 524 8 295 6.64e-46 164
MS.gene51707.t1 MTR_5g083590 31.699 306 155 5 234 534 5 261 1.08e-45 162
MS.gene51707.t1 MTR_1g086540 30.286 350 221 8 191 530 8 344 3.22e-45 162
MS.gene51707.t1 MTR_7g102600 31.068 309 199 4 229 530 92 393 3.85e-44 161
MS.gene51707.t1 MTR_5g095490 34.884 301 174 6 242 530 67 357 3.15e-43 157
MS.gene51707.t1 MTR_4g124740 32.026 306 177 10 236 530 54 339 7.65e-42 154
MS.gene51707.t1 MTR_2g436070 32.997 297 177 8 20 307 38 321 4.93e-41 152
MS.gene51707.t1 MTR_6g042690 33.449 287 171 7 236 514 39 313 6.00e-40 148
MS.gene51707.t1 MTR_5g012600 31.270 307 189 6 236 530 63 359 2.90e-39 147
MS.gene51707.t1 MTR_8g102380 35.510 245 137 4 244 475 88 324 5.14e-37 140
MS.gene51707.t1 MTR_2g073390 30.795 302 191 8 236 530 71 361 1.09e-35 137
MS.gene51707.t1 MTR_2g033970 27.129 317 209 6 225 532 45 348 1.95e-35 136
MS.gene51707.t1 MTR_5g088290 30.068 296 191 5 236 530 48 328 7.65e-35 134
MS.gene51707.t1 MTR_5g088280 29.153 295 194 5 236 530 39 318 3.99e-34 132
MS.gene51707.t1 MTR_5g088300 30.169 295 191 4 236 530 37 316 5.73e-34 131
MS.gene51707.t1 MTR_5g093970 28.716 296 201 5 236 530 43 329 1.55e-33 130
MS.gene51707.t1 MTR_4g074290 28.758 306 192 8 236 530 71 361 3.73e-33 130
MS.gene51707.t1 MTR_8g036225 27.129 317 207 7 224 530 20 322 2.68e-31 124
MS.gene51707.t1 MTR_0009s0350 27.815 302 200 8 236 530 71 361 3.67e-30 122
MS.gene51707.t1 MTR_0009s0340 27.815 302 200 8 236 530 71 361 3.67e-30 122
MS.gene51707.t1 MTR_4g051810 28.523 298 193 6 236 530 37 317 1.44e-28 116
MS.gene51707.t1 MTR_2g436600 25.846 325 201 11 221 532 41 338 1.51e-26 110
MS.gene51707.t1 MTR_6g025590 35.795 176 90 6 231 389 41 210 9.59e-23 97.8
MS.gene51707.t1 MTR_0408s0030 37.864 103 59 2 412 514 36 133 2.89e-16 76.6
MS.gene51707.t1 MTR_4g120830 30.303 165 100 4 38 189 36 198 5.27e-15 74.3
MS.gene51707.t1 MTR_8g104765 30.303 165 100 4 38 189 45 207 1.74e-14 73.2
MS.gene51707.t1 MTR_0036s0140 30.303 165 99 5 36 196 76 228 1.80e-14 73.6
MS.gene51707.t1 MTR_4g120825 30.303 165 100 4 38 189 36 198 2.37e-14 72.4
MS.gene51707.t1 MTR_7g102580 40.000 100 50 2 296 390 59 153 2.76e-14 70.9
MS.gene51707.t1 MTR_7g108790 28.090 178 107 5 17 189 23 184 4.55e-12 65.5
MS.gene51707.t1 MTR_6g024200 29.762 168 101 6 364 530 125 276 6.57e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51707.t1 AT3G10710 57.225 519 206 7 24 541 58 561 0.0 624
MS.gene51707.t1 AT5G04960 56.038 530 210 8 19 541 51 564 0.0 603
MS.gene51707.t1 AT1G53840 44.860 535 264 13 21 534 56 580 9.61e-151 444
MS.gene51707.t1 AT5G49180 42.727 550 282 11 15 540 29 569 2.21e-144 428
MS.gene51707.t1 AT3G05610 40.590 542 297 9 15 541 34 565 1.50e-141 424
MS.gene51707.t1 AT5G53370 43.738 519 275 9 35 541 72 585 2.13e-138 413
MS.gene51707.t1 AT5G53370 43.738 519 275 9 35 541 108 621 1.14e-137 412
MS.gene51707.t1 AT5G27870 40.037 537 295 8 15 537 35 558 1.38e-136 413
MS.gene51707.t1 AT3G14300 44.186 516 251 12 38 531 459 959 2.58e-134 414
MS.gene51707.t1 AT3G14300 35.359 181 100 6 37 205 76 251 2.94e-20 95.5
MS.gene51707.t1 AT3G14300 32.544 169 91 5 37 189 270 431 4.29e-16 82.4
MS.gene51707.t1 AT3G49220 41.811 519 284 9 35 541 84 596 7.08e-134 402
MS.gene51707.t1 AT3G05620 40.260 539 253 9 47 541 28 541 1.09e-133 399
MS.gene51707.t1 AT3G49220 41.811 519 284 9 35 541 129 641 3.52e-133 402
MS.gene51707.t1 AT1G11580 45.372 443 229 4 103 538 118 554 1.85e-130 392
MS.gene51707.t1 AT3G43270 42.127 489 266 8 65 541 42 525 3.18e-130 390
MS.gene51707.t1 AT1G11580 45.372 443 229 4 103 538 139 575 4.68e-130 391
MS.gene51707.t1 AT3G06830 38.971 544 301 11 19 541 35 568 7.31e-128 385
MS.gene51707.t1 AT3G14310 40.331 543 268 12 38 537 59 588 4.10e-126 382
MS.gene51707.t1 AT2G26450 40.426 517 275 10 38 538 109 608 2.37e-125 380
MS.gene51707.t1 AT1G53830 41.210 529 275 10 38 537 62 583 3.36e-125 379
MS.gene51707.t1 AT4G33230 40.918 523 273 12 38 538 95 603 7.05e-125 379
MS.gene51707.t1 AT4G33220 40.719 501 263 9 67 541 31 523 5.24e-124 374
MS.gene51707.t1 AT2G45220 44.283 481 230 13 69 541 61 511 2.32e-122 369
MS.gene51707.t1 AT4G02330 44.235 477 223 10 107 541 96 571 9.08e-122 370
MS.gene51707.t1 AT2G26440 39.509 529 293 9 30 541 29 547 1.79e-121 368
MS.gene51707.t1 AT1G23200 44.880 459 212 9 107 536 103 549 6.30e-120 364
MS.gene51707.t1 AT1G02810 40.177 565 279 14 29 541 20 577 1.13e-119 365
MS.gene51707.t1 AT2G47550 44.252 461 228 9 104 537 96 554 1.41e-118 361
MS.gene51707.t1 AT5G51500 41.176 510 279 10 42 541 42 540 2.75e-117 357
MS.gene51707.t1 AT5G51490 40.891 516 272 12 42 541 38 536 1.59e-116 355
MS.gene51707.t1 AT4G33220 48.368 337 163 4 212 541 70 402 3.97e-113 342
MS.gene51707.t1 AT3G60730 40.430 465 250 9 99 541 60 519 1.41e-110 339
MS.gene51707.t1 AT3G59010 40.938 469 244 12 91 541 75 528 1.31e-109 337
MS.gene51707.t1 AT2G43050 40.816 441 236 8 102 537 92 512 4.64e-108 333
MS.gene51707.t1 AT4G02320 37.219 489 274 8 69 537 39 514 5.40e-108 333
MS.gene51707.t1 AT3G47400 37.405 524 305 9 33 541 79 594 2.38e-107 333
MS.gene51707.t1 AT4G03930 43.627 408 217 6 139 541 125 524 4.30e-107 330
MS.gene51707.t1 AT3G10720 36.716 542 286 12 41 537 82 611 1.39e-106 332
MS.gene51707.t1 AT4G02300 37.810 484 276 8 69 537 55 528 1.99e-106 329
MS.gene51707.t1 AT1G11590 43.032 409 218 7 139 541 125 524 5.00e-105 325
MS.gene51707.t1 AT5G04970 36.431 538 291 12 42 537 88 616 1.92e-104 327
MS.gene51707.t1 AT3G27980 43.532 402 214 6 143 541 106 497 5.79e-103 319
MS.gene51707.t1 AT4G00190 41.309 443 226 10 104 541 61 474 9.87e-103 317
MS.gene51707.t1 AT5G20860 39.238 446 239 10 110 541 111 538 3.14e-100 313
MS.gene51707.t1 AT4G15980 44.602 352 188 3 196 540 350 701 4.41e-96 307
MS.gene51707.t1 AT4G15980 30.723 166 102 4 41 201 51 208 9.94e-16 80.9
MS.gene51707.t1 AT4G15980 44.602 352 188 3 196 540 360 711 9.83e-96 306
MS.gene51707.t1 AT4G15980 30.723 166 102 4 41 201 61 218 1.03e-15 80.9
MS.gene51707.t1 AT3G10720 50.193 259 125 1 287 541 1 259 7.43e-90 277
MS.gene51707.t1 AT3G62170 32.639 576 325 13 15 538 21 585 1.72e-87 281
MS.gene51707.t1 AT2G47030 32.112 573 329 10 15 536 20 583 3.06e-87 281
MS.gene51707.t1 AT2G47040 31.732 583 325 13 15 536 20 590 2.32e-84 273
MS.gene51707.t1 AT5G09760 34.924 524 299 17 32 529 39 546 8.84e-84 271
MS.gene51707.t1 AT5G09760 34.924 524 299 17 32 529 65 572 2.96e-83 270
MS.gene51707.t1 AT5G64640 32.314 523 305 12 38 529 93 597 5.15e-82 268
MS.gene51707.t1 AT1G11370 48.638 257 126 2 224 474 32 288 1.18e-81 256
MS.gene51707.t1 AT5G20860 36.471 425 210 9 110 520 111 489 2.84e-81 263
MS.gene51707.t1 AT2G36710 33.841 328 193 5 210 530 75 385 1.26e-50 179
MS.gene51707.t1 AT1G05310 32.372 312 194 5 229 530 84 388 7.86e-49 174
MS.gene51707.t1 AT5G19730 33.432 338 198 7 210 530 54 381 9.59e-48 171
MS.gene51707.t1 AT3G29090 33.110 299 181 4 236 524 7 296 1.69e-46 165
MS.gene51707.t1 AT1G44980 44.444 189 103 1 214 400 54 242 1.46e-44 158
MS.gene51707.t1 AT2G21610 30.820 305 194 6 236 538 51 340 8.68e-44 159
MS.gene51707.t1 AT2G21610 30.820 305 194 6 236 538 56 345 1.06e-43 159
MS.gene51707.t1 AT2G36700 31.544 298 191 4 238 530 44 333 2.05e-43 157
MS.gene51707.t1 AT3G49220 34.247 292 179 7 35 319 129 414 2.74e-43 159
MS.gene51707.t1 AT5G55590 33.876 307 181 7 236 530 82 378 5.22e-40 149
MS.gene51707.t1 AT5G47500 30.945 307 190 6 236 530 61 357 3.63e-39 147
MS.gene51707.t1 AT3G17060 28.076 317 204 8 225 531 35 337 4.02e-39 146
MS.gene51707.t1 AT5G07430 29.043 303 193 7 236 530 67 355 7.87e-39 145
MS.gene51707.t1 AT5G07420 30.492 305 194 7 232 530 63 355 1.59e-38 145
MS.gene51707.t1 AT5G55590 36.111 252 141 6 236 475 82 325 2.11e-36 138
MS.gene51707.t1 AT2G19150 30.293 307 187 7 236 530 41 332 8.93e-36 137
MS.gene51707.t1 AT1G69940 28.188 298 189 8 243 530 73 355 5.46e-34 132
MS.gene51707.t1 AT5G18990 28.013 307 199 6 235 530 28 323 7.30e-34 131
MS.gene51707.t1 AT5G61680 28.618 304 194 8 236 530 69 358 7.93e-34 132
MS.gene51707.t1 AT5G07410 28.188 298 189 8 243 530 73 355 1.68e-33 131
MS.gene51707.t1 AT3G24130 27.742 310 200 7 233 530 31 328 1.97e-31 124
MS.gene51707.t1 AT5G26810 27.687 307 203 6 236 530 34 333 5.51e-31 123
MS.gene51707.t1 AT2G47280 27.157 313 205 7 236 536 35 336 4.90e-30 120
MS.gene51707.t1 AT2G19150 30.556 252 150 6 236 475 41 279 8.88e-29 116
MS.gene51707.t1 AT2G01610 29.714 175 103 6 38 193 45 218 3.56e-14 72.4
MS.gene51707.t1 AT4G25260 30.120 166 99 5 35 189 35 194 1.19e-12 67.4
MS.gene51707.t1 AT1G14890 27.711 166 102 5 38 193 59 216 1.24e-12 67.8
MS.gene51707.t1 AT3G62820 32.468 154 93 5 42 189 38 186 6.92e-12 65.1
MS.gene51707.t1 AT1G62760 28.750 160 100 4 38 189 148 301 6.85e-11 63.9

Find 81 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAGAGAATGCAACATTTA+TGG 0.133360 3.4:-6769598 MS.gene51707:CDS
TATTGCAACATTTCACCTTA+TGG 0.209971 3.4:-6768788 MS.gene51707:CDS
TGTCCATGCATAGGTAAATT+TGG 0.220570 3.4:+6769517 None:intergenic
CACTAAACACTCTCAATTTA+AGG 0.230641 3.4:-6771028 MS.gene51707:CDS
CTTGATCAGCACTTGTCATT+AGG 0.242637 3.4:+6769689 None:intergenic
GTAATACCTGTGTTCATGTT+AGG 0.244770 3.4:+6769460 None:intergenic
TGTCATATATTAGATTTAAA+AGG 0.279480 3.4:+6768470 None:intergenic
GTCCTCTTCTTACTCTTATT+AGG 0.292543 3.4:+6770843 None:intergenic
TTGATCAGCACTTGTCATTA+GGG 0.305728 3.4:+6769690 None:intergenic
CTTGTTAATCCATGTTATTA+TGG 0.318803 3.4:+6771052 None:intergenic
TGAGGGTTGAAAAGACTAAA+TGG 0.320872 3.4:-6770782 MS.gene51707:CDS
ATGAAAATGAAACACCAAAA+TGG 0.333710 3.4:-6770986 MS.gene51707:CDS
AAATGGAATGTGATGATTAT+TGG 0.339933 3.4:-6770765 MS.gene51707:CDS
ACAAACAGCTTTCATAGAAT+TGG 0.348007 3.4:+6772963 None:intergenic
TACCAACAAACTTGCATTGA+AGG 0.380394 3.4:-6771158 MS.gene51707:CDS
GTTGTAATTGCAGCTGTATT+AGG 0.384030 3.4:-6773042 MS.gene51707:intron
ATTGAAATACTCAATAGCTT+TGG 0.387409 3.4:+6772819 None:intergenic
ATGACTTCTACAATTGTATC+TGG 0.392408 3.4:-6770735 MS.gene51707:CDS
AATGGCTTCATTCAAAAGAT+AGG 0.393533 3.4:-6770968 MS.gene51707:CDS
ATGTCTTTCTTCAAATCCTA+TGG 0.403623 3.4:-6773162 MS.gene51707:CDS
TATGCAGAATTTCAGAATGT+TGG 0.411955 3.4:-6768620 MS.gene51707:CDS
ACCCAAGGTAACCAACCATT+TGG 0.414876 3.4:+6768671 None:intergenic
AGCCTTCAATGCAAGTTTGT+TGG 0.416410 3.4:+6771156 None:intergenic
ATCCAAATGGTTGGTTACCT+TGG 0.417105 3.4:-6768673 MS.gene51707:CDS
CTATTCTTTGTTACAGCACC+TGG 0.424884 3.4:+6768596 None:intergenic
TCCAAATGGTTGGTTACCTT+GGG 0.427039 3.4:-6768672 MS.gene51707:CDS
AACAGCCTTAGCTCTATTGT+TGG 0.431188 3.4:-6772910 MS.gene51707:CDS
AACTTGCATTGAAGGCTTTG+AGG 0.434420 3.4:-6771150 MS.gene51707:CDS
ATAACTCATTGACTACTTCA+AGG 0.447687 3.4:-6772699 MS.gene51707:CDS
TAATACCTGTGTTCATGTTA+GGG 0.451328 3.4:+6769461 None:intergenic
CTTAGCTCTATTGTTGGCTC+AGG 0.452926 3.4:-6772904 MS.gene51707:CDS
ACATCACTCAAGTTTCCATA+AGG 0.453833 3.4:+6768773 None:intergenic
GGGGTGCAAATAGCTGTGTT+TGG 0.461469 3.4:-6769781 MS.gene51707:intron
CTTTGATCTATGTGAAGAAA+GGG 0.476833 3.4:-6770821 MS.gene51707:CDS
ACTTTGATCTATGTGAAGAA+AGG 0.491788 3.4:-6770822 MS.gene51707:CDS
CTACTGCTTGGTGCTTCTGT+GGG 0.492596 3.4:+6769713 None:intergenic
GCTACTGCTTGGTGCTTCTG+TGG 0.493167 3.4:+6769712 None:intergenic
GATAGATGGATTCCTGCATC+AGG 0.496589 3.4:-6768497 MS.gene51707:CDS
TGCAAATAGCTGTGTTTGGA+AGG 0.502336 3.4:-6769777 MS.gene51707:intron
CAAACATGGTTAAGTGCTGC+AGG 0.516841 3.4:-6772640 MS.gene51707:intron
GATAACTTAAACAACTCCTC+AGG 0.525559 3.4:+6772868 None:intergenic
GATATTGTTGTTGCTAAAGA+TGG 0.526341 3.4:-6770909 MS.gene51707:CDS
TTAAAAGGTGAACCTGATGC+AGG 0.527666 3.4:+6768485 None:intergenic
AGTGATGTTAAAGTATACCT+TGG 0.528468 3.4:-6768758 MS.gene51707:CDS
AGTTTACATGAGAACAAGAA+TGG 0.528669 3.4:-6768708 MS.gene51707:CDS
AAGTATACCTTGGAAGACCT+TGG 0.531313 3.4:-6768748 MS.gene51707:CDS
AATTCTTCCAAGGTCTTCCA+AGG 0.542477 3.4:+6768741 None:intergenic
TACATGAGAACAAGAATGGA+TGG 0.544255 3.4:-6768704 MS.gene51707:CDS
TTGTCATTAGGGCTACTGCT+TGG 0.547037 3.4:+6769701 None:intergenic
TAACAAAGAATAGAGTGAAG+TGG 0.549271 3.4:-6768586 MS.gene51707:CDS
ACAAATCACAATCACAGCAC+AGG 0.553538 3.4:-6769494 MS.gene51707:CDS
ATCTGGCAAGCTTAATGTTG+TGG 0.559296 3.4:-6770718 MS.gene51707:CDS
GTGGTTGAGTAATTCTTCCA+AGG 0.559304 3.4:+6768731 None:intergenic
ATGCCAAATTTACCTATGCA+TGG 0.560698 3.4:-6769520 MS.gene51707:CDS
GTTGTTGCTAAAGATGGTAG+TGG 0.560858 3.4:-6770903 MS.gene51707:CDS
TAACTCATTGACTACTTCAA+GGG 0.562940 3.4:-6772698 MS.gene51707:CDS
ATGGGATTTCGCAATACAGC+AGG 0.566414 3.4:-6769736 MS.gene51707:CDS
AAAGAATAGAGTGAAGTGGA+AGG 0.572886 3.4:-6768582 MS.gene51707:CDS
CTGAGCCAACAATAGAGCTA+AGG 0.575807 3.4:+6772905 None:intergenic
AAGAATAGAGTGAAGTGGAA+GGG 0.576530 3.4:-6768581 MS.gene51707:CDS
GTGATTTGTTGTCCATGCAT+AGG 0.581410 3.4:+6769508 None:intergenic
AATGTTGCAGTTGAAAATGT+TGG 0.587854 3.4:+6770687 None:intergenic
CAAATCACAATCACAGCACA+GGG 0.595949 3.4:-6769493 MS.gene51707:CDS
GGATTTACTATGAAAATGTG+AGG 0.598970 3.4:-6770800 MS.gene51707:CDS
GGTGCTGAGTTTCCTACCCA+AGG 0.599782 3.4:+6768656 None:intergenic
CATAATAACATGGATTAACA+AGG 0.601433 3.4:-6771051 MS.gene51707:CDS
GAATTTCAGAATGTTGGACC+AGG 0.604828 3.4:-6768614 MS.gene51707:CDS
TCTTGTTCTCATGTAAACTG+TGG 0.608649 3.4:+6768712 None:intergenic
TTCCTAATAAGAGTAAGAAG+AGG 0.614803 3.4:-6770845 MS.gene51707:CDS
AATTTCATAGCAAGAGACAT+GGG 0.617671 3.4:-6769754 MS.gene51707:CDS
TAGGAAACTACTTAGTACAA+AGG 0.618391 3.4:-6770949 MS.gene51707:CDS
ATTGAGTATTTCAATGAACA+TGG 0.622296 3.4:-6772811 MS.gene51707:CDS
AATGGTTGGTTACCTTGGGT+AGG 0.636618 3.4:-6768668 MS.gene51707:CDS
AATGTGATGATTATTGGTGA+TGG 0.642955 3.4:-6770759 MS.gene51707:CDS
GAATTTCATAGCAAGAGACA+TGG 0.647909 3.4:-6769755 MS.gene51707:CDS
GGCAAGCTTAATGTTGTGGA+TGG 0.651622 3.4:-6770714 MS.gene51707:CDS
GATTTACTATGAAAATGTGA+GGG 0.654637 3.4:-6770799 MS.gene51707:CDS
AGGAAAAGATGTTCAACCTG+AGG 0.665526 3.4:-6772884 MS.gene51707:CDS
ACAGTCTTGCCATAATAACA+TGG 0.667941 3.4:-6771061 MS.gene51707:CDS
ACTGACCCTAACATGAACAC+AGG 0.671597 3.4:-6769466 MS.gene51707:intron
GGTAGATGATAGTAGAACCA+AGG 0.675190 3.4:-6772773 MS.gene51707:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTGTAAATTAATTTTT+AGG + chr3.4:6769469-6769488 None:intergenic 10.0%
!!! TAAATTTTAAACATATAACA+TGG + chr3.4:6769837-6769856 None:intergenic 10.0%
!!! TTTTATTTATTCAATTTCAA+TGG + chr3.4:6769981-6770000 None:intergenic 10.0%
!! AAATACGATAACAAATTATA+TGG - chr3.4:6772527-6772546 MS.gene51707:intron 15.0%
!! AATGATTAATGAATATAACA+AGG - chr3.4:6772362-6772381 MS.gene51707:intron 15.0%
!! ATATATTTGAATACAAAATG+TGG - chr3.4:6772688-6772707 MS.gene51707:CDS 15.0%
!! TATGAATAATTGGTATTTAT+TGG + chr3.4:6769626-6769645 None:intergenic 15.0%
!! TGTTCTTTCTAATATTAATT+TGG - chr3.4:6769049-6769068 MS.gene51707:intron 15.0%
!! TTATCTTCAATAATCTTTAT+TGG - chr3.4:6768568-6768587 MS.gene51707:CDS 15.0%
!! TTGACTATATATATAGTATA+TGG + chr3.4:6769174-6769193 None:intergenic 15.0%
!!! AAAACGAATTAAACTTTTTT+AGG - chr3.4:6769484-6769503 MS.gene51707:CDS 15.0%
!!! AAACGAATTAAACTTTTTTA+GGG - chr3.4:6769485-6769504 MS.gene51707:CDS 15.0%
!!! AATCATAGGAAAAATTATTT+TGG - chr3.4:6771050-6771069 MS.gene51707:CDS 15.0%
!!! AATTTACTACTATTTCTTTT+GGG + chr3.4:6771365-6771384 None:intergenic 15.0%
!!! CTTTTTTGTTCAATATTTTT+TGG - chr3.4:6771408-6771427 MS.gene51707:intron 15.0%
!!! TTTCATTTTTTTGTTTTCTT+GGG - chr3.4:6771832-6771851 MS.gene51707:intron 15.0%
!!! TTTTCATTTTTTTGTTTTCT+TGG - chr3.4:6771831-6771850 MS.gene51707:intron 15.0%
!!! TTTTTTTATTAACATGTCAT+CGG + chr3.4:6770264-6770283 None:intergenic 15.0%
!! AAAAGTTAGTTAGTAAAACA+AGG + chr3.4:6772799-6772818 None:intergenic 20.0%
!! AATATGTGGTTAATTATGTT+CGG - chr3.4:6772337-6772356 MS.gene51707:intron 20.0%
!! AGAAATTATGAAATTCAAAC+AGG + chr3.4:6769777-6769796 None:intergenic 20.0%
!! CATACATAAATCATTTCAAA+TGG - chr3.4:6770129-6770148 MS.gene51707:intron 20.0%
!! GAAAATTAAATGTGTGAATT+TGG + chr3.4:6769240-6769259 None:intergenic 20.0%
!! TAATTGACCACATATTTAAA+CGG + chr3.4:6772559-6772578 None:intergenic 20.0%
!! TTAAAAGACAAAAGATTGAA+CGG + chr3.4:6771538-6771557 None:intergenic 20.0%
!! TTTAATTGTAAATAGTTTCG+TGG + chr3.4:6770065-6770084 None:intergenic 20.0%
!! TTTGTAAATGCTGAAAAAAT+AGG - chr3.4:6770449-6770468 MS.gene51707:intron 20.0%
!!! AATTATTTTGGTTCTTGTTT+TGG - chr3.4:6771062-6771081 MS.gene51707:CDS 20.0%
!!! ATTTACTACTATTTCTTTTG+GGG + chr3.4:6771364-6771383 None:intergenic 20.0%
!!! CAATTTACTACTATTTCTTT+TGG + chr3.4:6771366-6771385 None:intergenic 20.0%
!!! CAGTAGAAAAAAATTAGTTT+TGG - chr3.4:6771021-6771040 MS.gene51707:CDS 20.0%
!!! CATTTCATTTTATTGATAAG+AGG - chr3.4:6772247-6772266 MS.gene51707:intron 20.0%
!!! TAATTTGTTATCGTATTTTG+AGG + chr3.4:6772299-6772318 None:intergenic 20.0%
!!! TATTTAGTATAGATTTTCTC+CGG + chr3.4:6771453-6771472 None:intergenic 20.0%
!!! TCTTATTTAAGCTTATCTAT+TGG - chr3.4:6771106-6771125 MS.gene51707:CDS 20.0%
!!! TTCATTTTTTTGTTTTCTTG+GGG - chr3.4:6771833-6771852 MS.gene51707:intron 20.0%
!!! TTTTGGTTTTTATGTATGTT+TGG - chr3.4:6771079-6771098 MS.gene51707:CDS 20.0%
! AAATGGAATGTGATGATTAT+TGG - chr3.4:6770869-6770888 MS.gene51707:CDS 25.0%
! AATATGTGGTCAATTATGTT+CGG - chr3.4:6772563-6772582 MS.gene51707:intron 25.0%
! ATGAAAATGAAACACCAAAA+TGG - chr3.4:6770648-6770667 MS.gene51707:intron 25.0%
! ATTCCTAAGTTACTAATGTT+TGG + chr3.4:6771810-6771829 None:intergenic 25.0%
! ATTGAAATACTCAATAGCTT+TGG + chr3.4:6768818-6768837 None:intergenic 25.0%
! ATTGAGTATTTCAATGAACA+TGG - chr3.4:6768823-6768842 MS.gene51707:intron 25.0%
! CTCATGTTCTTATGAATAAT+TGG + chr3.4:6769636-6769655 None:intergenic 25.0%
! CTTGTTAATCCATGTTATTA+TGG + chr3.4:6770585-6770604 None:intergenic 25.0%
! GATTTACTATGAAAATGTGA+GGG - chr3.4:6770835-6770854 MS.gene51707:CDS 25.0%
! GGTGATTAATGAATATAACA+AGG - chr3.4:6772584-6772603 MS.gene51707:intron 25.0%
! GGTGGTTAATAAATAAAACA+AGG + chr3.4:6772778-6772797 None:intergenic 25.0%
! TATAGAGAATGCAACATTTA+TGG - chr3.4:6772036-6772055 MS.gene51707:intron 25.0%
! TATCCAAACATTAGTAACTT+AGG - chr3.4:6771804-6771823 MS.gene51707:intron 25.0%
! TATGTGATACAACTTATGTT+TGG - chr3.4:6770231-6770250 MS.gene51707:intron 25.0%
! TCTGCATAAAAAATTGTATC+TGG + chr3.4:6773002-6773021 None:intergenic 25.0%
! TTATGATTGTGATTCTCTTT+CGG + chr3.4:6768546-6768565 None:intergenic 25.0%
! TTCTACAACGAAAGATAAAA+TGG + chr3.4:6770361-6770380 None:intergenic 25.0%
! TTCTATCAAAAATAGCTCAT+TGG - chr3.4:6771689-6771708 MS.gene51707:intron 25.0%
! TTGATAGAACATTATGACAT+TGG + chr3.4:6771678-6771697 None:intergenic 25.0%
!! CATAATAACATGGATTAACA+AGG - chr3.4:6770583-6770602 MS.gene51707:intron 25.0%
!! GCTAATTCATTTTCAAAACT+AGG - chr3.4:6769261-6769280 MS.gene51707:intron 25.0%
!! TAATAAAGCGCTTATCATAT+AGG + chr3.4:6771777-6771796 None:intergenic 25.0%
!! TTTTCAAAACTAGGTACTTT+AGG - chr3.4:6769270-6769289 MS.gene51707:intron 25.0%
!! TTTTTATAAGTTTCTTCCAC+CGG - chr3.4:6771431-6771450 MS.gene51707:intron 25.0%
!!! AAACATGTTTTGAAGTCTAA+AGG - chr3.4:6769408-6769427 MS.gene51707:intron 25.0%
!!! AACATGTTTTGAAGTCTAAA+GGG - chr3.4:6769409-6769428 MS.gene51707:intron 25.0%
!!! AAGAACATGAGTTTGATTTT+TGG - chr3.4:6769645-6769664 MS.gene51707:CDS 25.0%
!!! CTAACTTTTTCTCTTTTAAC+AGG - chr3.4:6772810-6772829 MS.gene51707:CDS 25.0%
!!! GATGGTTTTATTAATCCAAA+TGG - chr3.4:6772948-6772967 MS.gene51707:CDS 25.0%
!!! GTTTTATTAATCCAAATGGT+TGG - chr3.4:6772952-6772971 MS.gene51707:CDS 25.0%
!!! TCATTTTTTTGTTTTCTTGG+GGG - chr3.4:6771834-6771853 MS.gene51707:intron 25.0%
!!! TTTACTACTATTTCTTTTGG+GGG + chr3.4:6771363-6771382 None:intergenic 25.0%
!!! TTTGGTGTTTCATTTTCATA+AGG + chr3.4:6770647-6770666 None:intergenic 25.0%
!!! TTTTTGATGATCTTCAAACA+TGG - chr3.4:6768980-6768999 MS.gene51707:intron 25.0%
AACATTATGACATTGGAACA+AGG + chr3.4:6771671-6771690 None:intergenic 30.0%
AATGGCTTCATTCAAAAGAT+AGG - chr3.4:6770666-6770685 MS.gene51707:intron 30.0%
AATGTGATGATTATTGGTGA+TGG - chr3.4:6770875-6770894 MS.gene51707:CDS 30.0%
AATGTTGCAGTTGAAAATGT+TGG + chr3.4:6770950-6770969 None:intergenic 30.0%
AATTTCATAGCAAGAGACAT+GGG - chr3.4:6771880-6771899 MS.gene51707:intron 30.0%
ACAAACAGCTTTCATAGAAT+TGG + chr3.4:6768674-6768693 None:intergenic 30.0%
ACTTTGATCTATGTGAAGAA+AGG - chr3.4:6770812-6770831 MS.gene51707:CDS 30.0%
AGGCTTAAATCACTACTATA+AGG + chr3.4:6769125-6769144 None:intergenic 30.0%
AGTGATGTTAAAGTATACCT+TGG - chr3.4:6772876-6772895 MS.gene51707:CDS 30.0%
AGTTAGTTAGTAAAACAAGG+TGG + chr3.4:6772796-6772815 None:intergenic 30.0%
AGTTTACATGAGAACAAGAA+TGG - chr3.4:6772926-6772945 MS.gene51707:CDS 30.0%
ATGACTTCTACAATTGTATC+TGG - chr3.4:6770899-6770918 MS.gene51707:CDS 30.0%
ATGTCTTTCTTCAAATCCTA+TGG - chr3.4:6768472-6768491 MS.gene51707:CDS 30.0%
CACTAAACACTCTCAATTTA+AGG - chr3.4:6770606-6770625 MS.gene51707:intron 30.0%
CTTTACGCAGTTTAAATATG+TGG - chr3.4:6772323-6772342 MS.gene51707:intron 30.0%
CTTTGATCTATGTGAAGAAA+GGG - chr3.4:6770813-6770832 MS.gene51707:CDS 30.0%
GAAAACAAAAATGTGGTCAA+TGG - chr3.4:6772474-6772493 MS.gene51707:intron 30.0%
GGATTTACTATGAAAATGTG+AGG - chr3.4:6770834-6770853 MS.gene51707:CDS 30.0%
GTTAATGACGTTCAAAATTG+TGG + chr3.4:6772654-6772673 None:intergenic 30.0%
TAACAAAGAATAGAGTGAAG+TGG - chr3.4:6773048-6773067 MS.gene51707:intron 30.0%
TAACCACTTAACAAATTGCT+TGG + chr3.4:6769596-6769615 None:intergenic 30.0%
TAATACCTGTGTTCATGTTA+GGG + chr3.4:6772176-6772195 None:intergenic 30.0%
TAGGAAACTACTTAGTACAA+AGG - chr3.4:6770685-6770704 MS.gene51707:CDS 30.0%
TATGATTGTGATTCTCTTTC+GGG + chr3.4:6768545-6768564 None:intergenic 30.0%
TATGCAGAATTTCAGAATGT+TGG - chr3.4:6773014-6773033 MS.gene51707:CDS 30.0%
TATTGCAACATTTCACCTTA+TGG - chr3.4:6772846-6772865 MS.gene51707:CDS 30.0%
TGTTGAAATTCGAAGAACTT+TGG - chr3.4:6771486-6771505 MS.gene51707:intron 30.0%
TTCCTAATAAGAGTAAGAAG+AGG - chr3.4:6770789-6770808 MS.gene51707:CDS 30.0%
! ACATTTTCAACTGCAACATT+TGG - chr3.4:6770950-6770969 MS.gene51707:CDS 30.0%
! ATAACTCATTGACTACTTCA+AGG - chr3.4:6768935-6768954 MS.gene51707:intron 30.0%
! ATGAACATGGTGTTTTCAAA+AGG - chr3.4:6768836-6768855 MS.gene51707:intron 30.0%
! GAAAAATTGTAGGGTTCTTT+TGG - chr3.4:6768891-6768910 MS.gene51707:intron 30.0%
! GATATTGTTGTTGCTAAAGA+TGG - chr3.4:6770725-6770744 MS.gene51707:CDS 30.0%
! GTTTATGCCGTTTAAATATG+TGG - chr3.4:6772549-6772568 MS.gene51707:intron 30.0%
! TAACTCATTGACTACTTCAA+GGG - chr3.4:6768936-6768955 MS.gene51707:intron 30.0%
! TCTTTTGAATGAAGCCATTT+TGG + chr3.4:6770665-6770684 None:intergenic 30.0%
! TGTACTCTGTAGAGTTTTTA+AGG + chr3.4:6770547-6770566 None:intergenic 30.0%
!! ACAATTTTTCAAAGCTTCCT+TGG + chr3.4:6768881-6768900 None:intergenic 30.0%
!! ACATGAGTTTGATTTTTGGA+TGG - chr3.4:6769649-6769668 MS.gene51707:CDS 30.0%
!! AGGAAGCTTTGAAAAATTGT+AGG - chr3.4:6768881-6768900 MS.gene51707:intron 30.0%
!! AGTTTTGGTACATGAATCAT+AGG - chr3.4:6771036-6771055 MS.gene51707:CDS 30.0%
!! GGAACAGTTGATTTCATTTT+TGG - chr3.4:6772057-6772076 MS.gene51707:intron 30.0%
!! GGAAGCTTTGAAAAATTGTA+GGG - chr3.4:6768882-6768901 MS.gene51707:intron 30.0%
!! TGTCTTTTAAGTAACACAGT+TGG - chr3.4:6771548-6771567 MS.gene51707:intron 30.0%
AAAACCATGTATGACATGCA+AGG - chr3.4:6769379-6769398 MS.gene51707:intron 35.0%
AAAGAATAGAGTGAAGTGGA+AGG - chr3.4:6773052-6773071 MS.gene51707:intron 35.0%
AAATATATACCTGCAAGTCG+TGG + chr3.4:6772676-6772695 None:intergenic 35.0%
AAGAATAGAGTGAAGTGGAA+GGG - chr3.4:6773053-6773072 MS.gene51707:intron 35.0%
ACAGTCTTGCCATAATAACA+TGG - chr3.4:6770573-6770592 MS.gene51707:intron 35.0%
ACATCACTCAAGTTTCCATA+AGG + chr3.4:6772864-6772883 None:intergenic 35.0%
ATGCCAAATTTACCTATGCA+TGG - chr3.4:6772114-6772133 MS.gene51707:intron 35.0%
GAATTTCATAGCAAGAGACA+TGG - chr3.4:6771879-6771898 MS.gene51707:intron 35.0%
GATAACTTAAACAACTCCTC+AGG + chr3.4:6768769-6768788 None:intergenic 35.0%
GTAATACCTGTGTTCATGTT+AGG + chr3.4:6772177-6772196 None:intergenic 35.0%
GTCAATGGCATTAAAATCGT+TGG - chr3.4:6772489-6772508 MS.gene51707:intron 35.0%
GTCCTCTTCTTACTCTTATT+AGG + chr3.4:6770794-6770813 None:intergenic 35.0%
GTTGTAATTGCAGCTGTATT+AGG - chr3.4:6768592-6768611 MS.gene51707:CDS 35.0%
TACATGAGAACAAGAATGGA+TGG - chr3.4:6772930-6772949 MS.gene51707:CDS 35.0%
TACCAACAAACTTGCATTGA+AGG - chr3.4:6770476-6770495 MS.gene51707:intron 35.0%
TATTAACATGTCATCGGAGT+CGG + chr3.4:6770258-6770277 None:intergenic 35.0%
TCTTGTTCTCATGTAAACTG+TGG + chr3.4:6772925-6772944 None:intergenic 35.0%
TGAGGGTTGAAAAGACTAAA+TGG - chr3.4:6770852-6770871 MS.gene51707:CDS 35.0%
TGGTTACTGTCGTTCAAAAT+CGG + chr3.4:6772434-6772453 None:intergenic 35.0%
TGTCCATGCATAGGTAAATT+TGG + chr3.4:6772120-6772139 None:intergenic 35.0%
TTATGACATTGGAACAAGGA+TGG + chr3.4:6771667-6771686 None:intergenic 35.0%
TTGATCAGCACTTGTCATTA+GGG + chr3.4:6771947-6771966 None:intergenic 35.0%
! ACATGGTGTTTTCAAAAGGT+TGG - chr3.4:6768840-6768859 MS.gene51707:intron 35.0%
! ACGTTCATCAACTTTTCCAT+AGG + chr3.4:6768491-6768510 None:intergenic 35.0%
! AGCTAGTAAGTTTTCAGTCA+AGG - chr3.4:6773100-6773119 MS.gene51707:intron 35.0%
! ATTTGACTTCTACAACACGA+AGG + chr3.4:6771513-6771532 None:intergenic 35.0%
! CTTTTCTTCAAGGAGATAGA+TGG - chr3.4:6773123-6773142 MS.gene51707:intron 35.0%
! GTATATGGTTTGAAACCGTT+TGG + chr3.4:6769159-6769178 None:intergenic 35.0%
! TTAGTATAGATTTTCTCCGG+TGG + chr3.4:6771450-6771469 None:intergenic 35.0%
!! GAACCAAGCAATTTGTTAAG+TGG - chr3.4:6769590-6769609 MS.gene51707:CDS 35.0%
!! GTACTTTAGGTTGAACTCTA+GGG - chr3.4:6769283-6769302 MS.gene51707:intron 35.0%
AACTTGCATTGAAGGCTTTG+AGG - chr3.4:6770484-6770503 MS.gene51707:intron 40.0%
AAGTATACCTTGGAAGACCT+TGG - chr3.4:6772886-6772905 MS.gene51707:CDS 40.0%
AATTCTTCCAAGGTCTTCCA+AGG + chr3.4:6772896-6772915 None:intergenic 40.0%
ACAAATCACAATCACAGCAC+AGG - chr3.4:6772140-6772159 MS.gene51707:intron 40.0%
AGCCTTCAATGCAAGTTTGT+TGG + chr3.4:6770481-6770500 None:intergenic 40.0%
AGGAAAAGATGTTCAACCTG+AGG - chr3.4:6768750-6768769 MS.gene51707:CDS 40.0%
ATCTGGCAAGCTTAATGTTG+TGG - chr3.4:6770916-6770935 MS.gene51707:CDS 40.0%
ATGTGTGAATTTGGCATGTG+TGG + chr3.4:6769231-6769250 None:intergenic 40.0%
CAAATCACAATCACAGCACA+GGG - chr3.4:6772141-6772160 MS.gene51707:intron 40.0%
CGTTGTTAATCGTGTTGAGT+TGG - chr3.4:6772728-6772747 MS.gene51707:CDS 40.0%
CTATTCTTTGTTACAGCACC+TGG + chr3.4:6773041-6773060 None:intergenic 40.0%
CTTGATCAGCACTTGTCATT+AGG + chr3.4:6771948-6771967 None:intergenic 40.0%
GAATCAAACAACGTCAGAGA+CGG - chr3.4:6771299-6771318 MS.gene51707:intron 40.0%
GAATTTCAGAATGTTGGACC+AGG - chr3.4:6773020-6773039 MS.gene51707:CDS 40.0%
GGTAGATGATAGTAGAACCA+AGG - chr3.4:6768861-6768880 MS.gene51707:intron 40.0%
GGTTAATTGTGTTCATCGGA+TGG + chr3.4:6772411-6772430 None:intergenic 40.0%
GGTTACTGTCGTTCAAAATC+GGG + chr3.4:6772433-6772452 None:intergenic 40.0%
GTGGTTGAGTAATTCTTCCA+AGG + chr3.4:6772906-6772925 None:intergenic 40.0%
GTTACTGTCGTTCAAAATCG+GGG + chr3.4:6772432-6772451 None:intergenic 40.0%
GTTGTTGCTAAAGATGGTAG+TGG - chr3.4:6770731-6770750 MS.gene51707:CDS 40.0%
TCGGGGTTAATTGTGTTCAT+CGG + chr3.4:6772415-6772434 None:intergenic 40.0%
TGCAAATAGCTGTGTTTGGA+AGG - chr3.4:6771857-6771876 MS.gene51707:intron 40.0%
TTAAAAGGTGAACCTGATGC+AGG + chr3.4:6773152-6773171 None:intergenic 40.0%
TTAGCAATGAGCTAAGCTCA+CGG - chr3.4:6772217-6772236 MS.gene51707:intron 40.0%
TTGTGGTTGATTGTGTTCAG+CGG + chr3.4:6772637-6772656 None:intergenic 40.0%
! ACCGTTTGGCTTAAATCAGT+AGG + chr3.4:6769145-6769164 None:intergenic 40.0%
! ATCCAAATGGTTGGTTACCT+TGG - chr3.4:6772961-6772980 MS.gene51707:CDS 40.0%
! TAAGCCTTATCCCACTAAGT+GGG - chr3.4:6771265-6771284 MS.gene51707:intron 40.0%
! TCAGTCAAGGCTTTTCTTCA+AGG - chr3.4:6773113-6773132 MS.gene51707:intron 40.0%
! TCCAAATGGTTGGTTACCTT+GGG - chr3.4:6772962-6772981 MS.gene51707:CDS 40.0%
!! AACAGCCTTAGCTCTATTGT+TGG - chr3.4:6768724-6768743 MS.gene51707:CDS 40.0%
!! ACTACTATTTCTTTTGGGGG+AGG + chr3.4:6771360-6771379 None:intergenic 40.0%
!! CTACTATTTCTTTTGGGGGA+GGG + chr3.4:6771359-6771378 None:intergenic 40.0%
!! GCCTACTGATTTAAGCCAAA+CGG - chr3.4:6769141-6769160 MS.gene51707:intron 40.0%
!! GGTACTTTAGGTTGAACTCT+AGG - chr3.4:6769282-6769301 MS.gene51707:intron 40.0%
!! GTGATTTGTTGTCCATGCAT+AGG + chr3.4:6772129-6772148 None:intergenic 40.0%
!! TGTTAATCGTGTTGAGTTGG+TGG - chr3.4:6772731-6772750 MS.gene51707:CDS 40.0%
ACCCAAGGTAACCAACCATT+TGG + chr3.4:6772966-6772985 None:intergenic 45.0%
ACTGACCCTAACATGAACAC+AGG - chr3.4:6772168-6772187 MS.gene51707:intron 45.0%
ATCCAGAAACGTATGAGACG+AGG + chr3.4:6771644-6771663 None:intergenic 45.0%
ATGGGATTTCGCAATACAGC+AGG - chr3.4:6771898-6771917 MS.gene51707:intron 45.0%
CACTTAGTGGGATAAGGCTT+AGG + chr3.4:6771266-6771285 None:intergenic 45.0%
CCATGTATGACATGCAAGGT+CGG - chr3.4:6769383-6769402 MS.gene51707:intron 45.0%
CTGAGCCAACAATAGAGCTA+AGG + chr3.4:6768732-6768751 None:intergenic 45.0%
GGCAAGCTTAATGTTGTGGA+TGG - chr3.4:6770920-6770939 MS.gene51707:CDS 45.0%
TAGCAATGAGCTAAGCTCAC+GGG - chr3.4:6772218-6772237 MS.gene51707:intron 45.0%
TCCAGAAACGTATGAGACGA+GGG + chr3.4:6771643-6771662 None:intergenic 45.0%
TTGTCATTAGGGCTACTGCT+TGG + chr3.4:6771936-6771955 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr3.4:6771266-6771285 MS.gene51707:intron 45.0%
! AATGGTTGGTTACCTTGGGT+AGG - chr3.4:6772966-6772985 MS.gene51707:CDS 45.0%
! CAAACATGGTTAAGTGCTGC+AGG - chr3.4:6768994-6769013 MS.gene51707:intron 45.0%
! CTAAGCCTTATCCCACTAAG+TGG - chr3.4:6771264-6771283 MS.gene51707:intron 45.0%
! GATAGATGGATTCCTGCATC+AGG - chr3.4:6773137-6773156 MS.gene51707:intron 45.0%
!! CTTAGCTCTATTGTTGGCTC+AGG - chr3.4:6768730-6768749 MS.gene51707:CDS 45.0%
!! TATTTCTTTTGGGGGAGGGA+GGG + chr3.4:6771355-6771374 None:intergenic 45.0%
AACGTCAGAGACGGATGCAA+GGG - chr3.4:6771308-6771327 MS.gene51707:intron 50.0%
AGCAATGAGCTAAGCTCACG+GGG - chr3.4:6772219-6772238 MS.gene51707:intron 50.0%
CCGACCTTGCATGTCATACA+TGG + chr3.4:6769386-6769405 None:intergenic 50.0%
CGTCATTAACCACGACTTGC+AGG - chr3.4:6772664-6772683 MS.gene51707:CDS 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr3.4:6771270-6771289 MS.gene51707:intron 50.0%
GGGGTGCAAATAGCTGTGTT+TGG - chr3.4:6771853-6771872 MS.gene51707:intron 50.0%
!! ATTTCTTTTGGGGGAGGGAG+GGG + chr3.4:6771354-6771373 None:intergenic 50.0%
!! CTACTGCTTGGTGCTTCTGT+GGG + chr3.4:6771924-6771943 None:intergenic 50.0%
!! CTATTTCTTTTGGGGGAGGG+AGG + chr3.4:6771356-6771375 None:intergenic 50.0%
ATGCAAGGGAGGGCAAGAGT+AGG - chr3.4:6771322-6771341 MS.gene51707:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr3.4:6771279-6771298 None:intergenic 55.0%
CAACGTCAGAGACGGATGCA+AGG - chr3.4:6771307-6771326 MS.gene51707:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr3.4:6771272-6771291 None:intergenic 55.0%
GCCCTCGTCTCATACGTTTC+TGG - chr3.4:6771639-6771658 MS.gene51707:intron 55.0%
TCAGAGACGGATGCAAGGGA+GGG - chr3.4:6771312-6771331 MS.gene51707:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr3.4:6771278-6771297 None:intergenic 55.0%
! GGTGCTGAGTTTCCTACCCA+AGG + chr3.4:6772981-6773000 None:intergenic 55.0%
!! GCTACTGCTTGGTGCTTCTG+TGG + chr3.4:6771925-6771944 None:intergenic 55.0%
GTCAGAGACGGATGCAAGGG+AGG - chr3.4:6771311-6771330 MS.gene51707:intron 60.0%
!! CTTTTGGGGGAGGGAGGGGC+TGG + chr3.4:6771350-6771369 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 6768472 6773184 6768472 ID=MS.gene51707
chr3.4 mRNA 6768472 6773184 6768472 ID=MS.gene51707.t1;Parent=MS.gene51707
chr3.4 exon 6773148 6773184 6773148 ID=MS.gene51707.t1.exon1;Parent=MS.gene51707.t1
chr3.4 CDS 6773148 6773184 6773148 ID=cds.MS.gene51707.t1;Parent=MS.gene51707.t1
chr3.4 exon 6772641 6773051 6772641 ID=MS.gene51707.t1.exon2;Parent=MS.gene51707.t1
chr3.4 CDS 6772641 6773051 6772641 ID=cds.MS.gene51707.t1;Parent=MS.gene51707.t1
chr3.4 exon 6770685 6771185 6770685 ID=MS.gene51707.t1.exon3;Parent=MS.gene51707.t1
chr3.4 CDS 6770685 6771185 6770685 ID=cds.MS.gene51707.t1;Parent=MS.gene51707.t1
chr3.4 exon 6769467 6769790 6769467 ID=MS.gene51707.t1.exon4;Parent=MS.gene51707.t1
chr3.4 CDS 6769467 6769790 6769467 ID=cds.MS.gene51707.t1;Parent=MS.gene51707.t1
chr3.4 exon 6768472 6768824 6768472 ID=MS.gene51707.t1.exon5;Parent=MS.gene51707.t1
chr3.4 CDS 6768472 6768824 6768472 ID=cds.MS.gene51707.t1;Parent=MS.gene51707.t1
Gene Sequence

>MS.gene51707

ATGTCTTTCTTCAAATCCTATGGAAAAGTTGATGAACGTGATCAAATGATGTTAGAAGCAAAAAGAAAAACCCGAAAGAGAATCACAATCATAAGCTTATCTTCAATAATCTTTATTGGTGTTGTAATTGCAGCTGTATTAGGAGTTGTTAACTCAAAAAATGATGATAACAACAATAATGCATCTCAAAATTCAGTGACCAATTCTATGAAAGCTGTTTGTGATGTTACATTGTACAAAGATTCATGTTATAACAGCCTTAGCTCTATTGTTGGCTCAGGAAAAGATGTTCAACCTGAGGAGTTGTTTAAGTTATCAATCAATGTAGCATTAACTCATGTGTCCAAAGCTATTGAGTATTTCAATGAACATGGTGTTTTCAAAAGGTTGGTAGATGATAGTAGAACCAAGGAAGCTTTGAAAAATTGTAGGGTTCTTTTGGATCTTGCTATTGATCATTTGAATAACTCATTGACTACTTCAAGGGAAAATTCTTCACTTCATCAAGTTTTTGATGATCTTCAAACATGGTTAAGTGCTGCAGGTAATTTGAACAAATAACATATCATTAAAATATTGTTCTTTCTAATATTAATTTGGTTTAAAATGAGTTTTTAGTTCTTTTAATATATTTTTGTTTTGTTTTTTGTCCTTATAGTAGTGATTTAAGCCTACTGATTTAAGCCAAACGGTTTCAAACCATATACTATATATATAGTCAATAACTTGCTTAACATATTTGAGCTATCATTTTGACCACACATGCCAAATTCACACATTTAATTTTCAGCTAATTCATTTTCAAAACTAGGTACTTTAGGTTGAACTCTAGGGTTGTATTTGTATTGATTTATTTGAGTATATCTACTAATATAAGAATTTATATGATTGTTTGTAAGAGCTTATGAAAACCATGTATGACATGCAAGGTCGGTCAAACATGTTTTGAAGTCTAAAGGGAATGAATATGATGCATTTATGTTAACAAAAGAAACCTAAAAATTAATTTACAAAAACGAATTAAACTTTTTTAGGGAAATACTATAAAATATATTGATTATTTATATGTAGTAAAATTTATCATTTTTATAAAAGAAACAGAAAAACAATTATAATATGAACCAAGCAATTTGTTAAGTGGTTAATGAGCTCCAATAAATACCAATTATTCATAAGAACATGAGTTTGATTTTTGGATGGAATAATGTTCTGTCAAAATAATACAGAATAGAGAAAAGACAGACATTATTCTACTTTATTGTATATATGCTTTATTATGTAATGTTTTTTTAGTTTAATTCACCTGTTTGAATTTCATAATTTCTATATGATATGAACTTATCTAAATTTTAGATTTAATATCCATGTTATATGTTTAAAATTTAAATGAAAATTGAAAGAGAAAAAAAGAGTATGTTATTAAGAACAAATTTACTTTGAAAAATGTCTATTAAAAATTTATAATTATTTTCAAATTATGTTGTTATGTGATATATAAAACTTTTTCCATTGAAATTGAATAAATAAAATTATTTAACTAATTGAGCAACGTTGTTTTCTTCATGTGAAAAAAATAAAAAGTTATGAGCACCACGAAACTATTTACAATTAAAAACACATTGCATTTGTTTTTCGTTTTTTCACTTAAAGAAAAAAACATACATAAATCATTTCAAATGGAAGTTTAATAGATGTGCACTAGACGTTGTAAATCATAATTTATTTATTTATTTTGAAATAATGTAAATCATCAATTTGTTATGTGATACAACTTATGTTTGGTCCGACTCCGATGACATGTTAATAAAAAAAAAACTATTATCATAGTTAGCTCTTTAGTATAGTTTATGAAACAAAATTATTTCTTATATGATTATAGTATGACTCCATTTTATCTTTCGTTGTAGAATTATCTATGATAATCGCTTAATTAAGTTGTGTATCACACTGCTAACAACAACATATATAACTTCATGTTTTGTAAATGCTGAAAAAATAGGTACGTACCAACAAACTTGCATTGAAGGCTTTGAGGATACAAAAGAACAACTTAAGACAAGTGTAACAAGCTACCTTAAAAACTCTACAGAGTACACAAGCAACAGTCTTGCCATAATAACATGGATTAACAAGGCACTAAACACTCTCAATTTAAGGCGTTTAATGAGTTTACCTTATGAAAATGAAACACCAAAATGGCTTCATTCAAAAGATAGGAAACTACTTAGTACAAAGGATTTAAGATCAAAAGCTGATATTGTTGTTGCTAAAGATGGTAGTGGAAAATATAAAACTATATCTGATGCACTTAAACATGTTCCTAATAAGAGTAAGAAGAGGACTTTGATCTATGTGAAGAAAGGGATTTACTATGAAAATGTGAGGGTTGAAAAGACTAAATGGAATGTGATGATTATTGGTGATGGTATGACTTCTACAATTGTATCTGGCAAGCTTAATGTTGTGGATGGTACACCAACATTTTCAACTGCAACATTTGGTATGTGACTCTATTTGTGTTTAAATATCTTTCTTTTTACTTTTACTTACAGTAGAAAAAAATTAGTTTTGGTACATGAATCATAGGAAAAATTATTTTGGTTCTTGTTTTGGTTTTTATGTATGTTTGGATTGTCTTATTTAAGCTTATCTATTGGCATAAGTGCTTTTGAGACTATTTTAGAGATCATATGAAAACAAATTATAACATGTTTATAAGCTTTTTCAACTTATTTTCATAAGTTTTTCAATATAGCTTACGAAAACAACAACAACAACAACAAGAACAAGACCTAAGCCTTATCCCACTAAGTGGGGTCGGCTACATGAATCAAACAACGTCAGAGACGGATGCAAGGGAGGGCAAGAGTAGGCTCCAGCCCCTCCCTCCCCCAAAAGAAATAGTAGTAAATTGAATTAAATTTGAATATATTTAACTTTTTTGTTCAATATTTTTTGGTTTTTATAAGTTTCTTCCACCGGAGAAAATCTATACTAAATACAAGTATCTTTTTTGTTGAAATTCGAAGAACTTTGGTCCTTCGTGTTGTAGAAGTCAAATATCCGTTCAATCTTTTGTCTTTTAAGTAACACAGTTGGACGTTTTTATTCTTTTTTGTTAAATTTTTCGTGTTTGCAAAAATATATTATAAATTAAAATCTTTTTAGCCCTCGTCTCATACGTTTCTGGATCCATCCTTGTTCCAATGTCATAATGTTCTATCAAAAATAGCTCATTGGTTATATGAAAATAGTTTTATTTTATTTTATCTTTTGTCATAGAAATAACTTACAGATAAGCACCTATATGATAAGCGCTTTATTAAGTTCTTTATCCAAACATTAGTAACTTAGGAATCTTTTCATTTTTTTGTTTTCTTGGGGGTGCAAATAGCTGTGTTTGGAAGGAATTTCATAGCAAGAGACATGGGATTTCGCAATACAGCAGGCCCACAGAAGCACCAAGCAGTAGCCCTAATGACAAGTGCTGATCAAGCAGTTTATTATAAGTGTCACATTGATGCATATCAAGACACTCTTTATGCTCATTCAAATCGACAATTCTATAGAGAATGCAACATTTATGGAACAGTTGATTTCATTTTTGGAAATTCAGCTGTTGTGATTCAGAACTGCAACATTATGCCAAATTTACCTATGCATGGACAACAAATCACAATCACAGCACAGGGAAAAACTGACCCTAACATGAACACAGGTATTACTAAAACATTGTGCATTGTCTTTAGCAATGAGCTAAGCTCACGGGGACAAACATTTCATTTTATTGATAAGAGGAATTATATTTTGACACACATATTTGTCATCAAAATACGATAACAAATTAGATGCTTTACGCAGTTTAAATATGTGGTTAATTATGTTCGGTTAATGATTAATGAATATAACAAGGTCTCGCAAGTCGCAACTTGTTAACCATCCGATGAACACAATTAACCCCGATTTTGAACGACAGTAACCACGACTTGCAATTATATATTTGAAAACAAAAATGTGGTCAATGGCATTAAAATCGTTGGAAGATTATGTCCTCAAAATACGATAACAAATTATATGGTTTATGCCGTTTAAATATGTGGTCAATTATGTTCGGTGATTAATGAATATAACAAGGTCTTGCAAGTCGCAACTTGTTAATCATCCGCTGAACACAATCAACCACAATTTTGAACGTCATTAACCACGACTTGCAGGTATATATTTGAATACAAAATGTGGTGAATGACATTAAAAATCGTTGTTAATCGTGTTGAGTTGGTGGTTAATGAGCATGACAGTGACACCTTGTTTTATTTATTAACCACCTTGTTTTACTAACTAACTTTTTCTCTTTTAACAGGTATCTCAATTCAATATTGCAACATTTCACCTTATGGAAACTTGAGTGATGTTAAAGTATACCTTGGAAGACCTTGGAAGAATTACTCAACCACAGTTTACATGAGAACAAGAATGGATGGTTTTATTAATCCAAATGGTTGGTTACCTTGGGTAGGAAACTCAGCACCAGATACAATTTTTTATGCAGAATTTCAGAATGTTGGACCAGGTGCTGTAACAAAGAATAGAGTGAAGTGGAAGGGTTTGAAAAATATTTCTAGTAAACAAGCTAGTAAGTTTTCAGTCAAGGCTTTTCTTCAAGGAGATAGATGGATTCCTGCATCAGGTTCACCTTTTAAATCTAATATATGA
Protein sequence

>MS.gene51707.t1

MSFFKSYGKVDEPVLGVVNSKNDDNNNNASQNSVTNSMKAVCDVTLYKDSCYNSLSSIVGSGKDVQPEELFKLSINVALTHVSKAIEYFNEHGVFKRLVDDSRTKEALKNCRVLLDLAIDHLNNSLTTSRENSSLHQVFDDLQTWLSAAGTYQQTCIEGFEDTKEQLKTSVTSYLKNSTEYTSNSLAIITWINKALNTLNLRRLMSLPYENETPKWLHSKDRKLLSTKDLRSKADIVVAKDGSGKYKTISDALKHVPNKSKKRTLIYVKKGIYYENVRVEKTKWNVMIIGDGMTSTIVSGKLNVVDGTPTFSTATFAVFGRNFIARDMGFRNTAGPQKHQAVALMTSADQAVYYKCHIDAYQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVIQNCNIMPNLPMHGQQITITAQGKTDPNMNTGISIQYCNISPYGNLSDVKVYLGRPWKNYSTTVYMRTRMDGFINPNGWLPWVGNSAPDTIFYAEFQNVGPGAVTKNRVKWKGLKNISSKQASKFSVKAFLQGDRWIPASGSPFKSNI