AlfalfaGEDB | MS.gene51875

M. sativa cultivar XinJiangDaYe / MS.gene51875

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51875.t1	RHN47457.1	99.3	710	5	0	8	717	157	866	0.00E+00	1254.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51875.t1	Q852L0	80.6	620	111	4	105	717	71	688	2.2e-264	912.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51875.t1	A0A396H929	99.3	710	5	0	8	717	157	866	0.0e+00	1254.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene21702	MS.gene51875	PPI
MS.gene33140	MS.gene51875	PPI
MS.gene51875	MS.gene21923	PPI
MS.gene51875	MS.gene024726	PPI
MS.gene51875	MS.gene016050	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51875.t1	MTR_7g085540	100.000	689	0	0	29	717	1	689	0.0	1432
MS.gene51875.t1	MTR_7g006030	79.443	574	117	1	145	717	7	580	0.0	981
MS.gene51875.t1	MTR_1g116210	71.339	635	164	6	92	717	32	657	0.0	947
MS.gene51875.t1	MTR_3g110240	74.523	577	138	2	145	717	91	662	0.0	931
MS.gene51875.t1	MTR_1g007150	71.664	607	156	5	117	717	69	665	0.0	920
MS.gene51875.t1	MTR_8g014050	70.833	576	164	3	145	717	98	672	0.0	852
MS.gene51875.t1	MTR_4g126010	38.754	289	159	6	168	453	4	277	1.35e-58	205
MS.gene51875.t1	MTR_2g099670	38.062	289	161	6	168	453	4	277	2.49e-57	202
MS.gene51875.t1	MTR_2g039930	37.370	289	163	6	168	453	4	277	2.36e-56	199
MS.gene51875.t1	MTR_8g018310	38.408	289	159	7	168	453	4	276	2.66e-56	199

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51875.t1	AT3G03940	83.309	689	108	3	29	717	1	682	0.0	1180
MS.gene51875.t1	AT5G18190	81.422	689	111	4	29	717	1	672	0.0	1136
MS.gene51875.t1	AT5G18190	81.422	689	111	4	29	717	1	672	0.0	1136
MS.gene51875.t1	AT3G13670	75.430	582	138	2	141	717	103	684	0.0	954
MS.gene51875.t1	AT2G25760	71.332	593	162	4	132	717	63	654	0.0	917
MS.gene51875.t1	AT2G25760	71.141	596	161	6	132	717	63	657	0.0	910
MS.gene51875.t1	AT3G03930	74.009	227	58	1	492	717	43	269	3.26e-117	354
MS.gene51875.t1	AT4G26100	38.062	289	161	6	168	453	4	277	6.31e-58	203
MS.gene51875.t1	AT2G19470	38.754	289	159	6	168	453	4	277	1.71e-57	202
MS.gene51875.t1	AT1G72710	38.754	289	158	7	168	453	4	276	6.12e-57	201

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Find 230 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGAGATTGCCGTGGC+AGG	0.468289	7.4:-21819567	MS.gene51875:CDS
AAAGAAAGCCAACCTTGTGC+AGG	0.526157	7.4:+21818506	None:intergenic
AAAGCCAACCTTGTGCAGGA+AGG	0.628987	7.4:+21818510	None:intergenic
AAAGCTCCATCAATTCTAAT+AGG	0.345290	7.4:+21819247	None:intergenic
AAAGGATTTACCCTTTCAAA+TGG	0.397776	7.4:+21820170	None:intergenic
AAAGGGAGATTGCCGTGGCA+GGG	0.586233	7.4:-21819566	MS.gene51875:CDS
AAATGATTCGCTCACTTTGT+AGG	0.366607	7.4:+21817487	None:intergenic
AAATGGAAGGATGCATCATC+TGG	0.447277	7.4:-21819809	MS.gene51875:CDS
AACAGAACTAGGAGGAGAGT+TGG	0.448810	7.4:-21821627	MS.gene51875:CDS
AACAGTAAAGGTTGTAATTA+TGG	0.186107	7.4:-21820712	MS.gene51875:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGCTCCATCAATTCTAAT+AGG	+	chr7.4:21819618-21819637	None:intergenic	30.0%
AAAGGATTTACCCTTTCAAA+TGG	+	chr7.4:21818695-21818714	None:intergenic	30.0%
AATAATAACATTGCGATGGA+GGG	-	chr7.4:21817457-21817476	MS.gene51875:CDS	30.0%
ACAAAAATGACAAACACTTG+TGG	+	chr7.4:21820855-21820874	None:intergenic	30.0%
ACCATTAGATAACATACATC+AGG	+	chr7.4:21821316-21821335	None:intergenic	30.0%
ACCTGATGTATGTTATCTAA+TGG	-	chr7.4:21821312-21821331	MS.gene51875:intron	30.0%
AGTGGAAACACAAAACTAAT+TGG	+	chr7.4:21818927-21818946	None:intergenic	30.0%
ATAAACAAGAAGTGGAAAGA+AGG	-	chr7.4:21821410-21821429	MS.gene51875:CDS	30.0%
ATATAAGACAGAAAGGAAGT+TGG	-	chr7.4:21817896-21817915	MS.gene51875:intron	30.0%
ATTAACACACGTATTTATGC+AGG	-	chr7.4:21817851-21817870	MS.gene51875:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	21816984	21821900	21816984	ID=MS.gene51875
chr7.4	mRNA	21816984	21821900	21816984	ID=MS.gene51875.t1;Parent=MS.gene51875
chr7.4	exon	21821876	21821900	21821876	ID=MS.gene51875.t1.exon1;Parent=MS.gene51875.t1
chr7.4	CDS	21821876	21821900	21821876	ID=cds.MS.gene51875.t1;Parent=MS.gene51875.t1
chr7.4	exon	21821341	21821813	21821341	ID=MS.gene51875.t1.exon2;Parent=MS.gene51875.t1
chr7.4	CDS	21821341	21821813	21821341	ID=cds.MS.gene51875.t1;Parent=MS.gene51875.t1
chr7.4	exon	21820886	21821011	21820886	ID=MS.gene51875.t1.exon3;Parent=MS.gene51875.t1
chr7.4	CDS	21820886	21821011	21820886	ID=cds.MS.gene51875.t1;Parent=MS.gene51875.t1
chr7.4	exon	21820685	21820758	21820685	ID=MS.gene51875.t1.exon4;Parent=MS.gene51875.t1
chr7.4	CDS	21820685	21820758	21820685	ID=cds.MS.gene51875.t1;Parent=MS.gene51875.t1
chr7.4	exon	21820494	21820563	21820494	ID=MS.gene51875.t1.exon5;Parent=MS.gene51875.t1
chr7.4	CDS	21820494	21820563	21820494	ID=cds.MS.gene51875.t1;Parent=MS.gene51875.t1
chr7.4	exon	21820360	21820415	21820360	ID=MS.gene51875.t1.exon6;Parent=MS.gene51875.t1
chr7.4	CDS	21820360	21820415	21820360	ID=cds.MS.gene51875.t1;Parent=MS.gene51875.t1
chr7.4	exon	21820181	21820252	21820181	ID=MS.gene51875.t1.exon7;Parent=MS.gene51875.t1
chr7.4	CDS	21820181	21820252	21820181	ID=cds.MS.gene51875.t1;Parent=MS.gene51875.t1
chr7.4	exon	21819979	21820073	21819979	ID=MS.gene51875.t1.exon8;Parent=MS.gene51875.t1
chr7.4	CDS	21819979	21820073	21819979	ID=cds.MS.gene51875.t1;Parent=MS.gene51875.t1
chr7.4	exon	21819770	21819836	21819770	ID=MS.gene51875.t1.exon9;Parent=MS.gene51875.t1
chr7.4	CDS	21819770	21819836	21819770	ID=cds.MS.gene51875.t1;Parent=MS.gene51875.t1
chr7.4	exon	21819559	21819688	21819559	ID=MS.gene51875.t1.exon10;Parent=MS.gene51875.t1
chr7.4	CDS	21819559	21819688	21819559	ID=cds.MS.gene51875.t1;Parent=MS.gene51875.t1
chr7.4	exon	21819243	21819461	21819243	ID=MS.gene51875.t1.exon11;Parent=MS.gene51875.t1
chr7.4	CDS	21819243	21819461	21819243	ID=cds.MS.gene51875.t1;Parent=MS.gene51875.t1
chr7.4	exon	21819013	21819143	21819013	ID=MS.gene51875.t1.exon12;Parent=MS.gene51875.t1
chr7.4	CDS	21819013	21819143	21819013	ID=cds.MS.gene51875.t1;Parent=MS.gene51875.t1
chr7.4	exon	21818519	21818693	21818519	ID=MS.gene51875.t1.exon13;Parent=MS.gene51875.t1
chr7.4	CDS	21818519	21818693	21818519	ID=cds.MS.gene51875.t1;Parent=MS.gene51875.t1
chr7.4	exon	21818327	21818417	21818327	ID=MS.gene51875.t1.exon14;Parent=MS.gene51875.t1
chr7.4	CDS	21818327	21818417	21818327	ID=cds.MS.gene51875.t1;Parent=MS.gene51875.t1
chr7.4	exon	21817373	21817530	21817373	ID=MS.gene51875.t1.exon15;Parent=MS.gene51875.t1
chr7.4	CDS	21817373	21817530	21817373	ID=cds.MS.gene51875.t1;Parent=MS.gene51875.t1
chr7.4	exon	21817085	21817273	21817085	ID=MS.gene51875.t1.exon16;Parent=MS.gene51875.t1
chr7.4	CDS	21817085	21817273	21817085	ID=cds.MS.gene51875.t1;Parent=MS.gene51875.t1
chr7.4	exon	21816984	21817004	21816984	ID=MS.gene51875.t1.exon17;Parent=MS.gene51875.t1
chr7.4	CDS	21816984	21817004	21816984	ID=cds.MS.gene51875.t1;Parent=MS.gene51875.t1

Gene Sequence

>MS.gene51875

ATGGTTGTTGTTTTTGTCGAAAAAGGTGTGTCGCTGAATGCTCTTGTTTCATTTGTGTAATTGATTTGATTTTTTTTTTTATTGCAGAGGATTTTTTTGCTGTTTTGGAGGGCTATAACGTGGGCTATGATTTGAATGGGGAGAGGATGCCAGAGTTGAGAAGTGGAGCAAGAAGGTCAAAGCGGCTTGGAGATCTTCAGCCTGGTCCACAACCTGTTGATCAAGGAGAGAATTGGGCAGAGCCTGCGCAGAACAGAACTAGGAGGAGAGTTGGAGGTGGAAGAGGAAGAGGCGGTAATGCCACAGGTTTAGGTAAAGGGTCTTCACCAGCTGTACCCACGAGACGAACTGCAGCTGGTAGAGGCCGCGGAGCAAGATTGATTGATTTGGATCCTCAACCTTGTGACCTCCTTCCAGAACCGGTTGCATTAAGGGCGCAGGAACCTGTTTACAATAACGTAGAGGTAGTGGCCAATAATAACATTGCGATGGAGGGTGGAAGTGGTGATAAAGGGGTGGCAGCTGAAGAAGACGCAAGCACAACCCCTGTCCCTGAGAGGGTATCTTCTTTATTTTGCGTTGCTTCTATTGCATTGCCTTAGTGCATTTTCAAAGATATTGCTGCAAATTTGTTTTAATGACGTGATTATTCGTTGTATCATTTATTAATTTTTTTTCCATGCTTTGCTGTTTTTCATTAATGTGTTGAACATATATTAATTGAGCTGTTCTGGAACTGAGATGGTAATCGAGATTTTGGTTTTGCATTTTATTTAAAGAATGTTTGTTATGTTCTGGTTCACCAGTTCATCCATGAAAGAGTTATCAACATCCTGTCAGTATAGATTTGTTGGTATCTTAATTTATATTAACACACGTATTTATGCAGGTGCAAGTTGGCAACTCTCCTGTATATAAGACAGAAAGGAAGTTGGGTAAGGGCGGTTTCGGCCAAGTTTATGTTGGCAGAAGGGTTAGTGGTGGCTCTGATCGAGTAGGTCCTGATGCTATTGAGGTATTACTCTGACATTCGATCTTTCTCTATCTCCCTCTCTCTCTGTCTGTCTTTCGGATCCAATGAAATATTAATAACACTGTGTGGGACGATACATTACCTTTTTCTTATTTAACTCTGTTTGAAGGTTGCACTCAAGTTTGAGCATAGAAACAGTAAAGGTTGTAATTATGGGCCTCCCTATGAGTGGCAAGTTTACAGGTATAAACAATCTTTCTTTCATGCATGAAAAGGCTTACCAAGAATACATTTTTTAAGCATTCTCAAGTGCTTTAATTTTATTATATCCAATTCTAACTTTTGTATTTTTGGCATTGATAAGCAATCTGAATGGCTGTTATGGCATTCCCGGGGTTCATTACAAGGGTCGACAAGGAGATTTCTACATTTTGGTGAGATATGGTTTCAACTTCCCTTTATCAACGTATATTGGCTGGTTCTTTTTTCTAAAGGAAAACAAATTATTTCAGGTTATGGACATACTTGGGCCCAGCCTTTGGGATGTATGGAATTCTCTTGGTCAATCGTAAGATTTGGACTATTTGTTTCATTATTTAGGTTCATTTAGTATAACTGTAAATTCTTTAAGTTCATTCCATTTTTGGCTCCACTGAACTTTTATCATCTCGACAGGATGTCACCAAGTATGGCTGCTTGCATTGCAGTGGAGGCAATATCAATTCTTGAGAAGCTCCATTTGAAAGGGTAAATCCTTTTGATATTTTTTCAGAGTCAATAGTAATATTTCCATTTATTATGAATAGGTTTAGGCTGATTGCTTTTTGTAAATGAAACTTGTGTCATTGAATCAGGTTTGTGCACGGAGATGTAAAACCAGAAAACTTTTTGCTTGGTCAACCTGGAACGGCTGATGATAAGAAGTTATATCTTATTGATCTTGGTTTAGGTATGCCGTCTTTTCAACCCAATTAGTTTTGTGTTTCCACTGCGTTTTAATTTTCTATCTATCCAACCTTAGATTTTAGTTATTTGGAGTTATACCATATTTTGCTTGTGCATTAATGTTCCATACCATGTGTTGTCTTCAGCTTCTAAATGGAAGGATGCATCATCTGGTCAACACGTTGAATATGATCAGAGACCTGATATATTCAGGTTTGTAAATGTTGCGAGTATAACATGGCTATCTTTTGTGATTTCATATTGACATTATAGATAATATCCCTTTTTGTGCAGGGGAACGATAAGATATGCTAGTGTACATGCACATTTAGGTAGGACTGGCAGTCGAAGGGATGATCTTGAGTCACTGGCATACACATTGATATTTCTCATAAAAGGGAGATTGCCGTGGCAGGGTTATCAGGTGCGTTTTGTATTATCTCATCGTGTATAGATTATTGCTTGCTTCTTAGAAGTTTTATCTTATATGGTATGATTTCTCTCTTTCCCCCAATCTACAGGGTGACAATAAAAGTTTTCTTGTTTGTAAGAAAAAAATGTCCACTTCTGCGGAGTTGATGTGTTGCTTTTGTCCCGCCCCATTTAAGCTGTTCCTAGAAGCAGTTACTAACATGAGATTTGATGAGGAGCCAAATTATTCCAAGCTTATATCACTTTTTGACAGCTTGATCGAACCATGCACTCCATTGAGACCTATTAGAATTGATGGAGCTTTAAAGGTTATTTTAACTGTCTTTTGTATTTATTTGAAGGTTTTAAGTGCTGTTTCTTTTCAAATATTGTTATTTATCTGAACACTATACTTTTTTTATATATAGGTTGGTCAAAAACGAGGAAGGATGCTTATTAATCTGGAAGAAGATGAGCAGCCCAAGAAAAAAGTGCGATTGGGTAGTCCTGCTACTCAGTGGATATCAGTGTATAATGCACGCCGTCCAATGAAGCAGAGGTAATTGATATATCTTCTATATGGCATCTCCTTAATGATACTGTTATATAGCGTGTTGCAATGTGATATTTTATTTCTCAATGTCTGTCTCTCTTCCTAGTTTTGCTTTGCTGTTTCTTCTCTATTCATTCAACCTTCAACTTTACTTCCATTTTCTGGTTCCAAAGGCTGGGGGATATCACTGTCATACCAAGCCAATGCCCTGAGTTCTCCATCTGCTTTGTTACACGATGCATCATATTCCCCGCAAAGGGTTGTTTATTAGAAGCCATCTCTTTATTTTGCTTCATTTAATAAGTAACACTTTCTTTGGTTGCAGATATCACTATAACGTAGCAGACAATAGGCTCCGGCAGCATGTAGACAAGGGCATTGAGGATGGGTTGTATATAAGCTGTGTGGCCTCTTCAGCGAATTTGTGGGCCCTGATCATGGATGCAGGAACAGGTTTTTCTTCCCAAGTTTATGAGTTGTCACCGGCCTTCCTGCACAAGGTTGGCTTTCTTTCCTTGATCTTTATATTTTGTCTTCTATTAAGCAAATCTTAAGGAATGCAATAATTGATGCATGGCTGCTGCTATTTTGACGACCTCAGGATTGGATTATGGAGCAATGGGAGAAAAATTACTATATCAGTTCAATAGCTGGTGCAGTTAATGGCAGTTCCTTGGTTGTCATGTCCAAAGGTTTGATCATTACACCCTTTTGCAACATTTATAGTTTTATGACCTACCTCCTTCTTTTCTCTTCGTATTGTCCATGTAATTTTCATGTACTATTTATTATTTAGGAATTGTTGTAGCTTGCCTATCATTGTCACCATTACCTTCACCTTAGCAACACATGCCGAGTCGTAGATATTTTTTGATATTTTTTATTTATTTCTTCTGGGTTTGTCTATATTGTTTTTTTTTTGTTCTTTTATGGTTGCTATGCCATTTAAGTTGTCTGTAGAAGCACTTCAAAATTGTAGACTTACACCACAAGTGTTTGTCATTTTTGTTCCAATTTAAATGTTACCTTTTGTATCAACATGGATCTGACGAGCTTCATATGTGCAATCCTGGACTCATTTGGCTCCCTTCTAGAAGCCTGGTCTTAGTTTTTTCCTATCCCGAAACCTGCGTTTGGATCCTATTTGCCTCCTTAGCCCACTTCGGCAGTGTATACATTTTTATGGAATTACTAAATGATTTAAAATACATTGATTCTCTCCATGTTCAATCTGCTTTCCTAATCATGCTCCTTAGATTGGTAAATTTCATGTTGGAGACATGTGGCAGTCTTTTTGACATATTAAACCTATGAGACAACACTTCCTTGAAAACAACGTAGTTAGATATATAATCTGGGACAAAAAAACTCTCAAATTGTTTTATCAGGGGGTTCTTTTCTTTTCCTCCGGGGATGAGAAAAACAGAATATTCTTCGTAATATATGACCTGATGTATGTTATCTAATGGTAGAATCCATGTTGTGTAGGAACTCCTTATACACAGCAGTCCTACAAAGTGAGCGAATCATTTCCTTTCAAATGGATAAACAAGAAGTGGAAAGAAGGGTTCCATGTTACCTCCATGACTACTGCTGGCAGTCGTTGGGGCGTAGTTATGTCCAGGAATGCTGGGTATTCTGATCAGGTATGTAACATTTTAACATTGTTATTCTGGTCATGTTTGATTTTTTTTTTTCTTTCTTTTTTAACACTAACATACTTATATTTCATTTGGTGATTCAAGGTTGTGGAGCTGGACTTTTTGTATCCAAGTGAGGGAATCCATCGAAGATGGGAAAATAATTACAGGATTACTTCTATGGCTGCTACTAATGATCAGGCAGCCTTCATACTTAGCATACCAAAACGCAAATTACTTGATGAGACTCAAGAGACTTTGCGGACATCTGCTTTCCCTAGCACCCATGTAAAGGTATATTTGCATTTATTGTCCCCTATTATATGTTGAGATTTATGTATTTTAAGCATGCCGGATGGTGTCTGGAAACCCAGTTTTTACAGCCAAGAGGATAA

Protein sequence

>MS.gene51875.t1

MVVVFVEKEDFFAVLEGYNVGYDLNGERMPELRSGARRSKRLGDLQPGPQPVDQGENWAEPAQNRTRRRVGGGRGRGGNATGLGKGSSPAVPTRRTAAGRGRGARLIDLDPQPCDLLPEPVALRAQEPVYNNVEVVANNNIAMEGGSGDKGVAAEEDASTTPVPERVQVGNSPVYKTERKLGKGGFGQVYVGRRVSGGSDRVGPDAIEVALKFEHRNSKGCNYGPPYEWQVYSNLNGCYGIPGVHYKGRQGDFYILVMDILGPSLWDVWNSLGQSMSPSMAACIAVEAISILEKLHLKGFVHGDVKPENFLLGQPGTADDKKLYLIDLGLASKWKDASSGQHVEYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMSTSAELMCCFCPAPFKLFLEAVTNMRFDEEPNYSKLISLFDSLIEPCTPLRPIRIDGALKVGQKRGRMLINLEEDEQPKKKVRLGSPATQWISVYNARRPMKQRYHYNVADNRLRQHVDKGIEDGLYISCVASSANLWALIMDAGTGFSSQVYELSPAFLHKDWIMEQWEKNYYISSIAGAVNGSSLVVMSKGTPYTQQSYKVSESFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNAGYSDQVVELDFLYPSEGIHRRWENNYRITSMAATNDQAAFILSIPKRKLLDETQETLRTSAFPSTHVKFLQPRG