AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52006

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52006.t1 MTR_8g094810 27.324 355 162 6 94 437 216 485 1.59e-28 121
MS.gene52006.t1 MTR_7g029555 48.855 131 66 1 780 910 68 197 1.63e-23 101
MS.gene52006.t1 MTR_6g045307 32.386 176 115 3 603 776 202 375 5.27e-21 100
MS.gene52006.t1 MTR_6g045307 29.557 203 127 8 767 962 506 699 2.21e-14 78.6
MS.gene52006.t1 MTR_0001s0660 48.235 85 44 0 582 666 376 460 1.87e-18 90.1
MS.gene52006.t1 MTR_0011s0100 32.143 168 103 6 791 952 2 164 8.90e-18 84.3
MS.gene52006.t1 MTR_1478s0010 34.043 141 66 2 825 965 65 178 9.90e-17 80.9
MS.gene52006.t1 MTR_4g044373 48.684 76 38 1 820 894 47 122 2.12e-16 78.2
MS.gene52006.t1 MTR_1g052140 26.203 187 104 4 622 776 165 349 2.14e-12 71.6
MS.gene52006.t1 MTR_0037s0030 31.788 151 90 7 809 952 1 145 9.66e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 238 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCTTCTGCTTTCATATTT+TGG 0.105491 3.3:+6457555 None:intergenic
AGCAATATTGAGACATTAAT+TGG 0.144010 3.3:+6457680 None:intergenic
GCTCTGTCCAACCGAGTTTA+TGG 0.185595 3.3:-6458274 MS.gene52006:CDS
CTGTAGTACCTATGGATATT+TGG 0.217032 3.3:-6457244 MS.gene52006:CDS
TGTTCTTGACTGGATATTTA+AGG 0.222546 3.3:-6458545 MS.gene52006:CDS
GACAACAAAGTGGCCATATC+TGG 0.225831 3.3:+6457197 None:intergenic
TGAACCGCCGACTTCATATT+TGG 0.226322 3.3:+6455565 None:intergenic
ATTCGGTTCAAAGGATTTAT+TGG 0.240797 3.3:-6457704 MS.gene52006:CDS
CGAGCTCTCGAATTAGATTT+TGG 0.264329 3.3:-6458382 MS.gene52006:CDS
GGATGTATACGTGCAGTTTC+CGG 0.274133 3.3:+6454668 None:intergenic
GCAGACTGGAGTTGCATTCT+AGG 0.274355 3.3:+6456108 None:intergenic
AACATCATCACTTGTTTGTT+AGG 0.285251 3.3:+6457860 None:intergenic
CGGTAAACTGTTGCATCATC+TGG 0.287438 3.3:+6458749 None:intergenic
CCTTCAGCTGCTGTAGTTAA+TGG 0.291398 3.3:+6454581 None:intergenic
AATGCTTTGAAGGGCGTTAC+TGG 0.295348 3.3:-6457737 MS.gene52006:CDS
TGAAAGAAGGTTTATTATAC+TGG 0.314107 3.3:-6455720 MS.gene52006:CDS
ACCACGAATTGTCCATTGTT+TGG 0.314569 3.3:-6457627 MS.gene52006:CDS
GGATTGGACAGGTGGCTTAC+AGG 0.314852 3.3:-6454700 MS.gene52006:CDS
CCACGAATTGTCCATTGTTT+GGG 0.325860 3.3:-6457626 MS.gene52006:CDS
GATACTCTTGCAACACTTGT+TGG 0.331442 3.3:+6455659 None:intergenic
GGCTTACAGGTTACAATTGC+CGG 0.335672 3.3:-6454687 MS.gene52006:CDS
TGGCAAGTTTATTACTTTGC+AGG 0.338362 3.3:-6457369 MS.gene52006:CDS
TTGAAGGGCGTTACTGGATA+TGG 0.340511 3.3:-6457731 MS.gene52006:CDS
GCTTACTTGTTACCAGTTGC+TGG 0.344593 3.3:-6457482 MS.gene52006:CDS
TGGATAATAAAGGTGGGTTG+GGG 0.347552 3.3:+6458020 None:intergenic
TATACAGCGCAATAATGTTT+TGG 0.352810 3.3:-6457588 MS.gene52006:CDS
GTGGATAATAAAGGTGGGTT+GGG 0.353350 3.3:+6458019 None:intergenic
AGTTGAGAAATGTGGAAAAC+AGG 0.354804 3.3:+6454647 None:intergenic
TTTAAAATCATTGAAAGGAT+TGG 0.357507 3.3:-6454716 MS.gene52006:CDS
AAAACATTATTGCGCTGTAT+AGG 0.364819 3.3:+6457590 None:intergenic
CGCTTGTTCAATATACATTC+AGG 0.365870 3.3:+6454545 None:intergenic
TCACCATGTTGTTGTGAATC+AGG 0.367990 3.3:+6457794 None:intergenic
ATAATTAATCTCTCAGGATC+TGG 0.371160 3.3:+6458493 None:intergenic
TGTAGTACCTATGGATATTT+GGG 0.378346 3.3:-6457243 MS.gene52006:CDS
TGCAGGCATTACTAGGACTA+TGG 0.386431 3.3:-6455614 MS.gene52006:CDS
CTCCTTCAATCTCGTATTGT+CGG 0.389427 3.3:+6458906 None:intergenic
TTGATATGTCTTACTTGAAA+TGG 0.390613 3.3:+6458598 None:intergenic
GAACAAGCGTACAGTGTTGC+AGG 0.391548 3.3:-6454531 MS.gene52006:CDS
TGGTGCAGTTGAGCTACTTC+AGG 0.392533 3.3:+6457329 None:intergenic
TAGTTGAGAAGATGCATAAT+CGG 0.392865 3.3:+6457406 None:intergenic
GCTTGGTTGCATAAGTTCAT+TGG 0.393954 3.3:-6455943 MS.gene52006:CDS
GTACCACTTCTTGCTCTAGA+TGG 0.395360 3.3:+6458461 None:intergenic
TCCAACCGATGTTGATGCTT+TGG 0.404891 3.3:+6458642 None:intergenic
TTTATCACTGAATGCTTTGA+AGG 0.407013 3.3:-6457747 MS.gene52006:CDS
AGGGGAACATAGGCTGTTAT+AGG 0.407391 3.3:+6454605 None:intergenic
CAATCTTGTCCTCAAGATTG+AGG 0.414975 3.3:+6454408 None:intergenic
AAGCTGGGGATGCGTTATTT+CGG 0.415255 3.3:-6454743 MS.gene52006:CDS
TGCAACCAAGCTTGTTGCTC+TGG 0.418613 3.3:+6455955 None:intergenic
TTTCATATTGAGTACAAGCC+AGG 0.423602 3.3:-6455913 MS.gene52006:CDS
AATTGTCAAGGCTGTGTCAT+TGG 0.424857 3.3:-6458164 MS.gene52006:CDS
CATGTCGACGGCGGCTGTGC+CGG 0.426471 3.3:+6458693 None:intergenic
AGCCTGAGTTCTTTCCTCCA+TGG 0.434671 3.3:+6458722 None:intergenic
AACTCCATCCATGACTGAAA+TGG 0.435942 3.3:+6458409 None:intergenic
GCCTGAGTTCTTTCCTCCAT+GGG 0.436883 3.3:+6458723 None:intergenic
ATCAAGTCAGCTCCAGCAAC+TGG 0.437954 3.3:+6457470 None:intergenic
CTCACAAAGTGGTCCCACCT+TGG 0.438178 3.3:+6454269 None:intergenic
GACCACTTTGTGAGAAAGTA+AGG 0.438255 3.3:-6454260 None:intergenic
CACCACTCGATTTGCACGAT+TGG 0.439259 3.3:-6458827 MS.gene52006:CDS
TCACAAAGTGGTCCCACCTT+GGG 0.441365 3.3:+6454270 None:intergenic
GGAGGAAAGAACTCAGGCTT+TGG 0.447235 3.3:-6458718 MS.gene52006:CDS
TTGTTGCTCTGGCGTTTGTA+AGG 0.447410 3.3:+6455966 None:intergenic
GCTCATAGGTCGTGTAGGGG+GGG 0.447868 3.3:+6457997 None:intergenic
GGATAATAAAGGTGGGTTGG+GGG 0.447917 3.3:+6458021 None:intergenic
AGTCAACATCCACCCAGATA+TGG 0.448953 3.3:-6457210 MS.gene52006:CDS
ACAGATGTGTCACTTGAGAT+AGG 0.449229 3.3:-6454830 MS.gene52006:CDS
ACATCATCACTTGTTTGTTA+GGG 0.450774 3.3:+6457861 None:intergenic
ATACATTCAGGAGCTAATAT+TGG 0.456135 3.3:+6454557 None:intergenic
GAGGGCATGCAGGCATTACT+AGG 0.458453 3.3:-6455621 MS.gene52006:CDS
GTCCAGTACCATTGTGTCAC+CGG 0.459223 3.3:-6458671 MS.gene52006:CDS
AAGAACTCAGGCTTTGGAAC+CGG 0.459834 3.3:-6458712 MS.gene52006:CDS
TGAAAGCAGAAGGGGTGGTA+AGG 0.460080 3.3:-6457547 MS.gene52006:CDS
TAATTAATCTCTCAGGATCT+GGG 0.460796 3.3:+6458494 None:intergenic
CAGCTGCTGTAGTTAATGGC+AGG 0.461420 3.3:+6454585 None:intergenic
CAAATATCCATAGGTACTAC+AGG 0.465680 3.3:+6457245 None:intergenic
GCAGCCACATTCTCCTTCCC+TGG 0.467037 3.3:+6455895 None:intergenic
CTCCCTACGCAATTGCATCT+CGG 0.469630 3.3:+6457934 None:intergenic
TTGTCCTCAAGATTGAGGTT+TGG 0.472064 3.3:+6454413 None:intergenic
GAAGCTATAATTAATCTCTC+AGG 0.472084 3.3:+6458487 None:intergenic
GTTATAGGCACACCTTTGAA+TGG 0.472620 3.3:+6454620 None:intergenic
AGTGGTACCATGGTTTCAAA+TGG 0.476938 3.3:-6458446 MS.gene52006:CDS
TCACCGATTGGAGGGCATGC+AGG 0.478526 3.3:-6455631 MS.gene52006:CDS
ATGCAATTGCGTAGGGAGAA+AGG 0.478669 3.3:-6457929 MS.gene52006:CDS
GTTGGCTCATAGGTCGTGTA+GGG 0.478940 3.3:+6457993 None:intergenic
GGAGAAATTCTCTTGATAGC+AGG 0.481760 3.3:+6457959 None:intergenic
GATGTTTGCACTACAACATA+TGG 0.482038 3.3:-6457270 MS.gene52006:CDS
ACGGTAAGAATGTTCTTGAC+TGG 0.482810 3.3:-6458555 MS.gene52006:CDS
TGAACCAAGTGCTAGTGAAA+TGG 0.483364 3.3:-6454496 MS.gene52006:CDS
CTACGCAATTGCATCTCGGC+TGG 0.484356 3.3:+6457938 None:intergenic
CTTGAGAAAGAATCAAAAGC+TGG 0.485408 3.3:-6454759 MS.gene52006:CDS
TATGGAGCCTGTAGTACCTA+TGG 0.487440 3.3:-6457252 MS.gene52006:CDS
CCCAAACAATGGACAATTCG+TGG 0.488894 3.3:+6457626 None:intergenic
GGCTCATAGGTCGTGTAGGG+GGG 0.491327 3.3:+6457996 None:intergenic
TCCCGGTGACACAATGGTAC+TGG 0.493362 3.3:+6458669 None:intergenic
GGCAAGTTTATTACTTTGCA+GGG 0.494204 3.3:-6457368 MS.gene52006:CDS
CCAGAGTCATGGCATTATCA+TGG 0.496312 3.3:-6455861 MS.gene52006:CDS
AAATTTCGCCACTATTTGCT+AGG 0.497061 3.3:-6456045 MS.gene52006:CDS
TATGGTGTCATTCGGTTCAA+AGG 0.499350 3.3:-6457713 MS.gene52006:CDS
CAACAATGCCTCAATAATAC+AGG 0.502583 3.3:-6455763 MS.gene52006:CDS
GCAATATTGAGACATTAATT+GGG 0.504250 3.3:+6457681 None:intergenic
GTCCATTTAAAATCATTGAA+AGG 0.504599 3.3:-6454721 MS.gene52006:CDS
TTACTGGATATGGTGTCATT+CGG 0.507046 3.3:-6457721 MS.gene52006:CDS
ATTGAAGGGAGCTCGATTTG+TGG 0.510092 3.3:+6458081 None:intergenic
CCATTGTTTGGGTTTACCAG+TGG 0.511350 3.3:-6457615 MS.gene52006:CDS
ATATCTGGGTGGATGTTGAC+TGG 0.513675 3.3:+6457212 None:intergenic
TGTCAGTGCCTGTATTATTG+AGG 0.514374 3.3:+6455755 None:intergenic
CCATGATAATGCCATGACTC+TGG 0.516788 3.3:+6455861 None:intergenic
GGTGGATAATAAAGGTGGGT+TGG 0.517476 3.3:+6458018 None:intergenic
CTTGAATTTCTGAGATTCAA+CGG 0.518323 3.3:-6458574 MS.gene52006:CDS
GAGAAATTCTCTTGATAGCA+GGG 0.519603 3.3:+6457960 None:intergenic
GATGATGTTGGAATTAGAAG+AGG 0.519884 3.3:-6457846 MS.gene52006:CDS
TCTCAACTTAAACCATTCAA+AGG 0.520962 3.3:-6454632 MS.gene52006:CDS
AATCATTGAAAGGATTGGAC+AGG 0.521831 3.3:-6454711 MS.gene52006:CDS
CAATCTCGTATTGTCGGCCA+TGG 0.522463 3.3:+6458912 None:intergenic
ATGGTTTAAGTTGAGAAATG+TGG 0.522680 3.3:+6454639 None:intergenic
AAGCATTCAGTGATAAATGA+TGG 0.527072 3.3:+6457753 None:intergenic
TGGAAGACATCTCGTTGAAT+CGG 0.528020 3.3:+6458779 None:intergenic
GAGTATCATGCTTCACCGAT+TGG 0.528891 3.3:-6455643 MS.gene52006:CDS
CCCCTTACTTTCTCACAAAG+TGG 0.529360 3.3:+6454258 None:intergenic
GTTGCCATTTCACTAGCACT+TGG 0.529375 3.3:+6454492 None:intergenic
ATCTGTGGCCTAGCAAATAG+TGG 0.529772 3.3:+6456037 None:intergenic
ACCAAAGCATCAACATCGGT+TGG 0.530014 3.3:-6458643 MS.gene52006:CDS
TTTGTAAGGACTGATCCAAC+AGG 0.531011 3.3:+6455980 None:intergenic
GTTGATGCTTTGGTTCCTCC+CGG 0.533146 3.3:+6458652 None:intergenic
TGATGCTCTTTCCAGAGTCA+TGG 0.533437 3.3:-6455872 MS.gene52006:CDS
ATTGTTCAATCACGTCCGCT+TGG 0.534144 3.3:+6458863 None:intergenic
TTGAGAAAGAATCAAAAGCT+GGG 0.535669 3.3:-6454758 MS.gene52006:CDS
TGCTGAGTTGCGACGCCAAG+CGG 0.536574 3.3:-6458878 MS.gene52006:CDS
CACATGAGCACGTTGAGAGA+AGG 0.537958 3.3:-6454319 MS.gene52006:CDS
AGTTGGCTCATAGGTCGTGT+AGG 0.538954 3.3:+6457992 None:intergenic
GAATAATGACGTGGACATAG+TGG 0.539239 3.3:-6454360 MS.gene52006:CDS
TTGCGCTGTATAGGTTCCAC+TGG 0.539480 3.3:+6457599 None:intergenic
AGTTAATGGCAGGGGAACAT+AGG 0.540995 3.3:+6454595 None:intergenic
GGCCGACAATACGAGATTGA+AGG 0.545252 3.3:-6458908 MS.gene52006:CDS
ACCTACTGCAGAGGCAACAT+GGG 0.545482 3.3:-6454465 MS.gene52006:CDS
AATGTCTCAATATTGCTAGA+TGG 0.546071 3.3:-6457674 MS.gene52006:CDS
TAGCTCAACTGCACCACTTG+AGG 0.546093 3.3:-6457322 MS.gene52006:CDS
TACCTACTGCAGAGGCAACA+TGG 0.547480 3.3:-6454466 MS.gene52006:CDS
ACAACAAAGTGGCCATATCT+GGG 0.548451 3.3:+6457198 None:intergenic
GCACCATGGCTAGCTTCACT+TGG 0.549556 3.3:-6457440 MS.gene52006:CDS
TAACAAACAAGTGATGATGT+TGG 0.553225 3.3:-6457858 MS.gene52006:CDS
GGTAAACTGTTGCATCATCT+GGG 0.553746 3.3:+6458750 None:intergenic
GATGTTGGAATTAGAAGAGG+AGG 0.554264 3.3:-6457843 MS.gene52006:CDS
ATAAATGATGGTCTGTAGCC+TGG 0.554512 3.3:+6457765 None:intergenic
ACATGAGCACGTTGAGAGAA+GGG 0.554633 3.3:-6454318 MS.gene52006:CDS
GGCCAAAATATGAAAGCAGA+AGG 0.555141 3.3:-6457557 MS.gene52006:CDS
GTTCTTTCCTCCATGGGTGA+CGG 0.555820 3.3:+6458729 None:intergenic
ATGCCTGCATGCCCTCCAAT+CGG 0.556182 3.3:+6455628 None:intergenic
AAGTTATCTGTTAAAGTACA+AGG 0.556538 3.3:-6457524 MS.gene52006:CDS
AACAATGGACAATTCGTGGT+TGG 0.557450 3.3:+6457630 None:intergenic
TTATCACTGAATGCTTTGAA+GGG 0.559038 3.3:-6457746 MS.gene52006:CDS
GGGGCGGTGTTGAGTCAAGG+GGG 0.560133 3.3:-6456165 MS.gene52006:intron
CACTAACAAAACAATCAACA+AGG 0.560443 3.3:+6458236 None:intergenic
ACGATTGGAAGAAATGCAAA+AGG 0.561251 3.3:-6458812 MS.gene52006:CDS
CATTGAAAGGATTGGACAGG+TGG 0.561403 3.3:-6454708 MS.gene52006:CDS
TCCAGTACCATTGTGTCACC+GGG 0.565783 3.3:-6458670 MS.gene52006:CDS
ACTCTCTAATATAAGCAGAC+TGG 0.566866 3.3:+6456094 None:intergenic
AGCCGAGATGCAATTGCGTA+GGG 0.572226 3.3:-6457936 MS.gene52006:CDS
TGGTGATTGTGTTGAAGTGG+TGG 0.572275 3.3:+6458618 None:intergenic
ACTCAAACCATAAACTCGGT+TGG 0.572859 3.3:+6458267 None:intergenic
TCCCATGTTGCCTCTGCAGT+AGG 0.575506 3.3:+6454464 None:intergenic
AGTAACTACACAGTGAAAGA+AGG 0.576544 3.3:-6455733 MS.gene52006:CDS
CAGCCGAGATGCAATTGCGT+AGG 0.577486 3.3:-6457937 MS.gene52006:CDS
AGCTGCTGTAGTTAATGGCA+GGG 0.579345 3.3:+6454586 None:intergenic
CATTACTCAAACCATAAACT+CGG 0.580265 3.3:+6458263 None:intergenic
CAACAGTTTACCGTCACCCA+TGG 0.584605 3.3:-6458739 MS.gene52006:CDS
ACAACATGGTGACGAAGACC+AGG 0.586335 3.3:-6457783 MS.gene52006:CDS
TGAAGAAAATTCACCCAAGG+TGG 0.588436 3.3:-6454283 MS.gene52006:CDS
AAGGGAGCTCGATTTGTGGA+TGG 0.588992 3.3:+6458085 None:intergenic
TTATTGGCCAAATATGAAGT+CGG 0.589024 3.3:-6455572 MS.gene52006:CDS
CTGTTCTTATTATAAATCTG+TGG 0.589522 3.3:+6456022 None:intergenic
TGACACAGCCTTGACAATTG+AGG 0.591289 3.3:+6458168 None:intergenic
GCCAAAATATGAAAGCAGAA+GGG 0.591437 3.3:-6457556 MS.gene52006:CDS
AAACGCCAGAGCAACAAGCT+TGG 0.591499 3.3:-6455960 MS.gene52006:CDS
ATCATGCTTCACCGATTGGA+GGG 0.594025 3.3:-6455639 MS.gene52006:CDS
GCAACTGGTAACAAGTAAGC+TGG 0.595245 3.3:+6457485 None:intergenic
AAATGGTGATTGTGTTGAAG+TGG 0.596115 3.3:+6458615 None:intergenic
ATGTCCTCCCAAATATCCAT+AGG 0.598327 3.3:+6457236 None:intergenic
TGAGATAGGCGACCAAGTGT+TGG 0.600338 3.3:-6454816 MS.gene52006:CDS
GTTGCAATTTAACCAACACT+TGG 0.600821 3.3:+6454804 None:intergenic
CAAGCCAGGGAAGGAGAATG+TGG 0.601151 3.3:-6455899 MS.gene52006:CDS
TGGCTCATAGGTCGTGTAGG+GGG 0.602899 3.3:+6457995 None:intergenic
CGAGTAACCATTTGAAACCA+TGG 0.603244 3.3:+6458439 None:intergenic
TGGATTAATGAACTATCCAC+CGG 0.603803 3.3:+6455679 None:intergenic
TTATCCAAACCTCAATCTTG+AGG 0.604440 3.3:-6454417 MS.gene52006:CDS
GACGTGGACATAGTGGCAAA+TGG 0.604606 3.3:-6454353 MS.gene52006:CDS
GAAGAAAATTCACCCAAGGT+GGG 0.608281 3.3:-6454282 MS.gene52006:CDS
GATGCATAATCGGCTACATG+AGG 0.608400 3.3:+6457416 None:intergenic
GATTGAAAGATGAAATACGC+AGG 0.608791 3.3:-6458213 MS.gene52006:CDS
CCAAAATATGAAAGCAGAAG+GGG 0.609882 3.3:-6457555 MS.gene52006:CDS
TGTGTTGCAATCTCCTCAAG+TGG 0.610818 3.3:+6457309 None:intergenic
GCGCACGTCCATTTCAGTCA+TGG 0.610879 3.3:-6458417 MS.gene52006:CDS
GCTGCTGTAGTTAATGGCAG+GGG 0.612633 3.3:+6454587 None:intergenic
TTCCAATCGTGCAAATCGAG+TGG 0.613951 3.3:+6458825 None:intergenic
ACCCATGGAGGAAAGAACTC+AGG 0.614644 3.3:-6458724 MS.gene52006:CDS
ACCACTTTGTGAGAAAGTAA+GGG 0.616635 3.3:-6454259 None:intergenic
GGTTCCTCCCGGTGACACAA+TGG 0.617117 3.3:+6458663 None:intergenic
CTCGATTTGTGGATGGTCTG+TGG 0.618102 3.3:+6458092 None:intergenic
AGTTTAAACAAGGAAGCTCG+AGG 0.619271 3.3:+6458340 None:intergenic
TATCATGCTTCACCGATTGG+AGG 0.619715 3.3:-6455640 MS.gene52006:CDS
ACGTCCATTTCAGTCATGGA+TGG 0.622317 3.3:-6458413 MS.gene52006:CDS
TTGCATCATCTGGGCAACGT+TGG 0.624720 3.3:+6458759 None:intergenic
TTGGCTCATAGGTCGTGTAG+GGG 0.628793 3.3:+6457994 None:intergenic
TACACCCACCTCAATTGTCA+AGG 0.629583 3.3:-6458176 MS.gene52006:CDS
TTCATATTGAGTACAAGCCA+GGG 0.630239 3.3:-6455912 MS.gene52006:CDS
GTCTCAATATTGCTAGATGG+AGG 0.631441 3.3:-6457671 MS.gene52006:CDS
ATTGAAAGCTAATCTGCAGA+AGG 0.631622 3.3:-6454891 MS.gene52006:CDS
CCATTAACTACAGCAGCTGA+AGG 0.635366 3.3:-6454581 MS.gene52006:CDS
GTTTAAACAAGGAAGCTCGA+GGG 0.635854 3.3:+6458341 None:intergenic
CAACCTGATTCACAACAACA+TGG 0.636136 3.3:-6457797 MS.gene52006:CDS
TAGAGCAAGAAGTGGTACCA+TGG 0.640664 3.3:-6458456 MS.gene52006:CDS
AATTAATCTCTCAGGATCTG+GGG 0.641454 3.3:+6458495 None:intergenic
AAATATGAAAGCAGAAGGGG+TGG 0.642209 3.3:-6457552 MS.gene52006:CDS
AACAAGCGTACAGTGTTGCA+GGG 0.643291 3.3:-6454530 MS.gene52006:CDS
AATGGTACTGGACATGTCGA+CGG 0.643674 3.3:+6458681 None:intergenic
CACAGCCTTGACAATTGAGG+TGG 0.648600 3.3:+6458171 None:intergenic
GTTTGAAGAAAATTCACCCA+AGG 0.651024 3.3:-6454286 MS.gene52006:CDS
TATTGAGTACAAGCCAGGGA+AGG 0.651702 3.3:-6455908 MS.gene52006:CDS
TGTCCATCTAGAGCAAGAAG+TGG 0.651860 3.3:-6458464 MS.gene52006:CDS
ATGCATAATCGGCTACATGA+GGG 0.653870 3.3:+6457417 None:intergenic
TGAGAAAGAATCAAAAGCTG+GGG 0.657214 3.3:-6454757 MS.gene52006:CDS
GCAACAGATACCTACTGCAG+AGG 0.660131 3.3:-6454474 MS.gene52006:CDS
ATTGAAAGATGAAATACGCA+GGG 0.660279 3.3:-6458212 MS.gene52006:CDS
CGAGGGCAATCATACAGAGA+GGG 0.664586 3.3:+6458358 None:intergenic
GGGCCAAGTGAAGCTAGCCA+TGG 0.667960 3.3:+6457437 None:intergenic
ACCATATAGACAAAATTCAG+TGG 0.668238 3.3:-6454783 MS.gene52006:CDS
ACTAACAAAACAATCAACAA+GGG 0.669952 3.3:+6458237 None:intergenic
TTGGCCAAATATGAAGTCGG+CGG 0.676714 3.3:-6455569 MS.gene52006:intron
AGTACCTATGGATATTTGGG+AGG 0.680973 3.3:-6457240 MS.gene52006:CDS
CAGTTTACCGTCACCCATGG+AGG 0.682249 3.3:-6458736 MS.gene52006:CDS
CCACTGGTAAACCCAAACAA+TGG 0.688004 3.3:+6457615 None:intergenic
GGTACTGGACATGTCGACGG+CGG 0.699297 3.3:+6458684 None:intergenic
GTGGACATAGTGGCAAATGG+TGG 0.702898 3.3:-6454350 MS.gene52006:CDS
AGGAACCAAAGCATCAACAT+CGG 0.704546 3.3:-6458647 MS.gene52006:CDS
TCGAGGGCAATCATACAGAG+AGG 0.706253 3.3:+6458357 None:intergenic
TAATGTAATGAATAATGACG+TGG 0.708487 3.3:-6454369 MS.gene52006:CDS
AGTACCATTGTGTCACCGGG+AGG 0.722294 3.3:-6458667 MS.gene52006:CDS
ACAAAGTGGCCATATCTGGG+TGG 0.724553 3.3:+6457201 None:intergenic
ACAGCCTTGACAATTGAGGT+GGG 0.749429 3.3:+6458172 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTATTCATCAATCTC+TGG + chr3.3:6456490-6456509 None:intergenic 20.0%
!!! AAGTGTTTACAAGTAAATTT+TGG - chr3.3:6457935-6457954 MS.gene52006:CDS 20.0%
!!! ATCCTTTCAATGATTTTAAA+TGG + chr3.3:6458456-6458475 None:intergenic 20.0%
!!! TTCTCAACTAAAATTTTATC+TGG - chr3.3:6455779-6455798 MS.gene52006:CDS 20.0%
!!! TTTAAAATCATTGAAAGGAT+TGG - chr3.3:6458456-6458475 MS.gene52006:CDS 20.0%
!!! TTTTAATATATAGTCCTACT+TGG - chr3.3:6456555-6456574 MS.gene52006:intron 20.0%
!!! TTTTAGAAAAGAATGCTATA+GGG + chr3.3:6457036-6457055 None:intergenic 20.0%
!!! TTTTTAGAAAAGAATGCTAT+AGG + chr3.3:6457037-6457056 None:intergenic 20.0%
!!! TTTTTGATTCAGTTTAAACA+AGG + chr3.3:6454845-6454864 None:intergenic 20.0%
! AAAATAATAGGAGAGGAAAA+TGG + chr3.3:6456194-6456213 None:intergenic 25.0%
! AAGTTATCTGTTAAAGTACA+AGG - chr3.3:6455648-6455667 MS.gene52006:CDS 25.0%
! ACTAACAAAACAATCAACAA+GGG + chr3.3:6454938-6454957 None:intergenic 25.0%
! ACTAATATCGTCAAATTACA+TGG - chr3.3:6457880-6457899 MS.gene52006:CDS 25.0%
! AGCAATATTGAGACATTAAT+TGG + chr3.3:6455495-6455514 None:intergenic 25.0%
! ATATTACAGAAGGTTTATCA+AGG - chr3.3:6456802-6456821 MS.gene52006:intron 25.0%
! CTGTTCTTATTATAAATCTG+TGG + chr3.3:6457153-6457172 None:intergenic 25.0%
! GAAAGAAGAAATTGAGAAAA+TGG - chr3.3:6456124-6456143 MS.gene52006:CDS 25.0%
! GCAATATTGAGACATTAATT+GGG + chr3.3:6455494-6455513 None:intergenic 25.0%
! TAATGTAATGAATAATGACG+TGG - chr3.3:6458803-6458822 MS.gene52006:CDS 25.0%
! TGAAAGAAGGTTTATTATAC+TGG - chr3.3:6457452-6457471 MS.gene52006:CDS 25.0%
! TTCTTTCGTACCAAAATAAT+AGG + chr3.3:6456206-6456225 None:intergenic 25.0%
! TTGATATGTCTTACTTGAAA+TGG + chr3.3:6454577-6454596 None:intergenic 25.0%
!! AAGTTATCTAAATGCTCTTT+TGG - chr3.3:6456641-6456660 MS.gene52006:intron 25.0%
!! AGACTTTAGAAATGTATTTG+AGG - chr3.3:6458046-6458065 MS.gene52006:CDS 25.0%
!! ATTTTCCTCTCCTATTATTT+TGG - chr3.3:6456193-6456212 MS.gene52006:intron 25.0%
!! CAACTAAAATTTTATCTGGA+TGG - chr3.3:6455783-6455802 MS.gene52006:CDS 25.0%
!! GTCCATTTAAAATCATTGAA+AGG - chr3.3:6458451-6458470 MS.gene52006:CDS 25.0%
!! GTTACTATGGATTTTATTAC+TGG - chr3.3:6457736-6457755 MS.gene52006:CDS 25.0%
!! TTCTTCAATAGATTAGTCAA+GGG + chr3.3:6456848-6456867 None:intergenic 25.0%
!! TTTCTTCAATAGATTAGTCA+AGG + chr3.3:6456849-6456868 None:intergenic 25.0%
!! TTTTCTCAATTTCTTCTTTC+TGG + chr3.3:6456124-6456143 None:intergenic 25.0%
!!! AATAATGTTTTGGTAGGAAA+TGG - chr3.3:6455594-6455613 MS.gene52006:CDS 25.0%
!!! AGCATTCTTTTCTAAAAAGA+TGG - chr3.3:6457039-6457058 MS.gene52006:intron 25.0%
!!! GAATAAGTGCTGAATTTTAT+TGG - chr3.3:6457584-6457603 MS.gene52006:CDS 25.0%
!!! TATTATTTTGGTACGAAAGA+AGG - chr3.3:6456205-6456224 MS.gene52006:intron 25.0%
!!! TCAATTTTAGTTGGATTGAA+GGG + chr3.3:6455108-6455127 None:intergenic 25.0%
AAAACATTATTGCGCTGTAT+AGG + chr3.3:6455585-6455604 None:intergenic 30.0%
AAATCAGGAAGATTAAGTAC+AGG + chr3.3:6456941-6456960 None:intergenic 30.0%
AACATCATCACTTGTTTGTT+AGG + chr3.3:6455315-6455334 None:intergenic 30.0%
AAGACACATCTTCTCAATAA+TGG + chr3.3:6456518-6456537 None:intergenic 30.0%
AAGCATTCAGTGATAAATGA+TGG + chr3.3:6455422-6455441 None:intergenic 30.0%
AAGTAAAAGCTGTTGTAGAA+TGG - chr3.3:6456729-6456748 MS.gene52006:intron 30.0%
AATCAGGAAGATTAAGTACA+GGG + chr3.3:6456940-6456959 None:intergenic 30.0%
AATGTCTCAATATTGCTAGA+TGG - chr3.3:6455498-6455517 MS.gene52006:intron 30.0%
ACAGATTTACTAGAATAGTC+AGG + chr3.3:6457844-6457863 None:intergenic 30.0%
ACCATATAGACAAAATTCAG+TGG - chr3.3:6458389-6458408 MS.gene52006:CDS 30.0%
ATAATTAATCTCTCAGGATC+TGG + chr3.3:6454682-6454701 None:intergenic 30.0%
ATACATTCAGGAGCTAATAT+TGG + chr3.3:6458618-6458637 None:intergenic 30.0%
ATTATTGAGAAGATGTGTCT+TGG - chr3.3:6456517-6456536 MS.gene52006:intron 30.0%
ATTCGATATGTTCCTAATTC+TGG - chr3.3:6458204-6458223 MS.gene52006:CDS 30.0%
ATTCGGTTCAAAGGATTTAT+TGG - chr3.3:6455468-6455487 MS.gene52006:intron 30.0%
ATTGAAAGATGAAATACGCA+GGG - chr3.3:6454960-6454979 MS.gene52006:intron 30.0%
CACTAACAAAACAATCAACA+AGG + chr3.3:6454939-6454958 None:intergenic 30.0%
CATTACTCAAACCATAAACT+CGG + chr3.3:6454912-6454931 None:intergenic 30.0%
GAAGCTATAATTAATCTCTC+AGG + chr3.3:6454688-6454707 None:intergenic 30.0%
GACTAATCTATTGAAGAAAG+AGG - chr3.3:6456850-6456869 MS.gene52006:intron 30.0%
TAATTAATCTCTCAGGATCT+GGG + chr3.3:6454681-6454700 None:intergenic 30.0%
TAGTTGAGAAGATGCATAAT+CGG + chr3.3:6455769-6455788 None:intergenic 30.0%
TCTATAAGTAGACAACAAAG+TGG + chr3.3:6455988-6456007 None:intergenic 30.0%
TCTCAACTTAAACCATTCAA+AGG - chr3.3:6458540-6458559 MS.gene52006:CDS 30.0%
TGTAGTACCTATGGATATTT+GGG - chr3.3:6455929-6455948 MS.gene52006:CDS 30.0%
TGTTCTTGACTGGATATTTA+AGG - chr3.3:6454627-6454646 MS.gene52006:CDS 30.0%
TTAGCTGAAGTAGAATACTT+GGG - chr3.3:6456665-6456684 MS.gene52006:intron 30.0%
TTATTGGCCAAATATGAAGT+CGG - chr3.3:6457600-6457619 MS.gene52006:CDS 30.0%
TTGAGAAAGAATCAAAAGCT+GGG - chr3.3:6458414-6458433 MS.gene52006:CDS 30.0%
TTTATCACTGAATGCTTTGA+AGG - chr3.3:6455425-6455444 MS.gene52006:intron 30.0%
TTTATCTCTATCTGACACAA+TGG + chr3.3:6457917-6457936 None:intergenic 30.0%
! ACATCATCACTTGTTTGTTA+GGG + chr3.3:6455314-6455333 None:intergenic 30.0%
! AGCTTTTGATAAATTGAAGC+AGG - chr3.3:6456901-6456920 MS.gene52006:intron 30.0%
! TAACAAACAAGTGATGATGT+TGG - chr3.3:6455314-6455333 MS.gene52006:intron 30.0%
! TATACAGCGCAATAATGTTT+TGG - chr3.3:6455584-6455603 MS.gene52006:CDS 30.0%
! TCTGTGGTATAGATTTTGTT+TGG + chr3.3:6455067-6455086 None:intergenic 30.0%
! TTATCACTGAATGCTTTGAA+GGG - chr3.3:6455426-6455445 MS.gene52006:intron 30.0%
! TTCTACAACAGCTTTTACTT+TGG + chr3.3:6456729-6456748 None:intergenic 30.0%
! TTGGGTGAATTTTCTTCAAA+CGG + chr3.3:6458887-6458906 None:intergenic 30.0%
!! AGTGTTTGGTCAATTTTAGT+TGG + chr3.3:6455117-6455136 None:intergenic 30.0%
!! ATGGTTTAAGTTGAGAAATG+TGG + chr3.3:6458536-6458555 None:intergenic 30.0%
!! CTTGAATTTCTGAGATTCAA+CGG - chr3.3:6454598-6454617 MS.gene52006:CDS 30.0%
!! CTTGTTGATTGTTTTGTTAG+TGG - chr3.3:6454937-6454956 MS.gene52006:intron 30.0%
!! TTAAGAGTATCTCCAGAATT+AGG + chr3.3:6458219-6458238 None:intergenic 30.0%
!!! CAAACAATGCATTTTGACTA+AGG + chr3.3:6456619-6456638 None:intergenic 30.0%
!!! GTCAATTTTAGTTGGATTGA+AGG + chr3.3:6455109-6455128 None:intergenic 30.0%
!!! TTTTTTTGTAGTTGGCTCAT+AGG + chr3.3:6455192-6455211 None:intergenic 30.0%
AAATGGTGATTGTGTTGAAG+TGG + chr3.3:6454560-6454579 None:intergenic 35.0%
AAATTTCGCCACTATTTGCT+AGG - chr3.3:6457127-6457146 MS.gene52006:intron 35.0%
AAGAATGTGAAGCAGTTAAG+GGG - chr3.3:6456761-6456780 MS.gene52006:intron 35.0%
AATCATTGAAAGGATTGGAC+AGG - chr3.3:6458461-6458480 MS.gene52006:CDS 35.0%
AATTAATCTCTCAGGATCTG+GGG + chr3.3:6454680-6454699 None:intergenic 35.0%
ACATATCGAATCAACTTTGG+AGG + chr3.3:6458195-6458214 None:intergenic 35.0%
ACGATTGGAAGAAATGCAAA+AGG - chr3.3:6454360-6454379 MS.gene52006:CDS 35.0%
ACTCTCTAATATAAGCAGAC+TGG + chr3.3:6457081-6457100 None:intergenic 35.0%
ACTGTAAAGCCACAAGATAA+TGG + chr3.3:6457766-6457785 None:intergenic 35.0%
AGTAACTACACAGTGAAAGA+AGG - chr3.3:6457439-6457458 MS.gene52006:CDS 35.0%
AGTTGAGAAATGTGGAAAAC+AGG + chr3.3:6458528-6458547 None:intergenic 35.0%
ATCAGGAAGATTAAGTACAG+GGG + chr3.3:6456939-6456958 None:intergenic 35.0%
ATTGAAAGCTAATCTGCAGA+AGG - chr3.3:6458281-6458300 MS.gene52006:CDS 35.0%
CAAATATCCATAGGTACTAC+AGG + chr3.3:6455930-6455949 None:intergenic 35.0%
CAACAATGCCTCAATAATAC+AGG - chr3.3:6457409-6457428 MS.gene52006:CDS 35.0%
CAAGAATGTGAAGCAGTTAA+GGG - chr3.3:6456760-6456779 MS.gene52006:intron 35.0%
CCAAAATATGAAAGCAGAAG+GGG - chr3.3:6455617-6455636 MS.gene52006:CDS 35.0%
CGCTTGTTCAATATACATTC+AGG + chr3.3:6458630-6458649 None:intergenic 35.0%
CTGTAGTACCTATGGATATT+TGG - chr3.3:6455928-6455947 MS.gene52006:CDS 35.0%
CTTAACTGCTTCACATTCTT+GGG + chr3.3:6456761-6456780 None:intergenic 35.0%
CTTAGCTGAAGTAGAATACT+TGG - chr3.3:6456664-6456683 MS.gene52006:intron 35.0%
CTTGAGAAAGAATCAAAAGC+TGG - chr3.3:6458413-6458432 MS.gene52006:CDS 35.0%
GAAGAGTTTAAAAAGCCTGT+TGG - chr3.3:6457177-6457196 MS.gene52006:intron 35.0%
GACATCTTTCAAATTCCCAA+AGG - chr3.3:6456008-6456027 MS.gene52006:CDS 35.0%
GATGATGTTGGAATTAGAAG+AGG - chr3.3:6455326-6455345 MS.gene52006:intron 35.0%
GATGTTTGCACTACAACATA+TGG - chr3.3:6455902-6455921 MS.gene52006:CDS 35.0%
GATTGAAAGATGAAATACGC+AGG - chr3.3:6454959-6454978 MS.gene52006:intron 35.0%
GCCAAAATATGAAAGCAGAA+GGG - chr3.3:6455616-6455635 MS.gene52006:CDS 35.0%
GGAACATATCGAATCAACTT+TGG + chr3.3:6458198-6458217 None:intergenic 35.0%
GGCAAGTTTATTACTTTGCA+GGG - chr3.3:6455804-6455823 MS.gene52006:CDS 35.0%
GTTGCAATTTAACCAACACT+TGG + chr3.3:6458371-6458390 None:intergenic 35.0%
GTTTGAAGAAAATTCACCCA+AGG - chr3.3:6458886-6458905 MS.gene52006:CDS 35.0%
TCATGATTGCATTCTCTGTT+AGG + chr3.3:6456041-6456060 None:intergenic 35.0%
TCGTACCAAAATAATAGGAG+AGG + chr3.3:6456201-6456220 None:intergenic 35.0%
TGAGAAAGAATCAAAAGCTG+GGG - chr3.3:6458415-6458434 MS.gene52006:CDS 35.0%
TGGATTAATGAACTATCCAC+CGG + chr3.3:6457496-6457515 None:intergenic 35.0%
TGGCAAGTTTATTACTTTGC+AGG - chr3.3:6455803-6455822 MS.gene52006:CDS 35.0%
TTATCCAAACCTCAATCTTG+AGG - chr3.3:6458755-6458774 MS.gene52006:CDS 35.0%
TTCATATTGAGTACAAGCCA+GGG - chr3.3:6457260-6457279 MS.gene52006:CDS 35.0%
TTTCATATTGAGTACAAGCC+AGG - chr3.3:6457259-6457278 MS.gene52006:CDS 35.0%
! ACGAATGGTAGTGAAAAATC+AGG + chr3.3:6456956-6456975 None:intergenic 35.0%
! ATAGTGGCGAAATTTTGCTA+AGG + chr3.3:6457122-6457141 None:intergenic 35.0%
! CTAGAATAGTCAGGCTTTAA+TGG + chr3.3:6457835-6457854 None:intergenic 35.0%
! GAGAAATTCTCTTGATAGCA+GGG + chr3.3:6455215-6455234 None:intergenic 35.0%
! GCCACTGAATTTTGTCTATA+TGG + chr3.3:6458393-6458412 None:intergenic 35.0%
! TTTTACTTTGGCCTGATCTA+CGG + chr3.3:6456717-6456736 None:intergenic 35.0%
!! AGGACAAGATTGCTTTTGAA+GGG - chr3.3:6458775-6458794 MS.gene52006:CDS 35.0%
!! ATTTCTTCTTTCTGGCTATG+AGG + chr3.3:6456116-6456135 None:intergenic 35.0%
!! ATTTTGGTACGAAAGAAGGA+TGG - chr3.3:6456209-6456228 MS.gene52006:intron 35.0%
!! CAGCTTTTGATTCTTTCTCA+AGG + chr3.3:6458415-6458434 None:intergenic 35.0%
!! TTACTGGATATGGTGTCATT+CGG - chr3.3:6455451-6455470 MS.gene52006:intron 35.0%
!!! CTTTTTCAGTGACTAGTGTT+TGG + chr3.3:6455131-6455150 None:intergenic 35.0%
!!! GAAGAACAAACTAGTTTTGC+CGG - chr3.3:6457474-6457493 MS.gene52006:CDS 35.0%
!!! TAGCAGGGTTTTTTTGTAGT+TGG + chr3.3:6455200-6455219 None:intergenic 35.0%
!!! TTAAGGCTGAGCAGTTTTTT+GGG - chr3.3:6454644-6454663 MS.gene52006:CDS 35.0%
!!! TTTAAGGCTGAGCAGTTTTT+TGG - chr3.3:6454643-6454662 MS.gene52006:CDS 35.0%
AAATATGAAAGCAGAAGGGG+TGG - chr3.3:6455620-6455639 MS.gene52006:CDS 40.0%
AACAATGGACAATTCGTGGT+TGG + chr3.3:6455545-6455564 None:intergenic 40.0%
AACTCCATCCATGACTGAAA+TGG + chr3.3:6454766-6454785 None:intergenic 40.0%
AATTGTCAAGGCTGTGTCAT+TGG - chr3.3:6455008-6455027 MS.gene52006:intron 40.0%
ACAACAAAGTGGCCATATCT+GGG + chr3.3:6455977-6455996 None:intergenic 40.0%
ACACCATTCAAAGCAGTGTA+TGG - chr3.3:6458162-6458181 MS.gene52006:CDS 40.0%
ACATCGTTTCACACTAGCAT+TGG - chr3.3:6458135-6458154 MS.gene52006:CDS 40.0%
ACCACGAATTGTCCATTGTT+TGG - chr3.3:6455545-6455564 MS.gene52006:intron 40.0%
ACGGTAAGAATGTTCTTGAC+TGG - chr3.3:6454617-6454636 MS.gene52006:CDS 40.0%
ACTCAAACCATAAACTCGGT+TGG + chr3.3:6454908-6454927 None:intergenic 40.0%
AGTACCTATGGATATTTGGG+AGG - chr3.3:6455932-6455951 MS.gene52006:CDS 40.0%
AGTGGTACCATGGTTTCAAA+TGG - chr3.3:6454726-6454745 MS.gene52006:CDS 40.0%
AGTTTAAACAAGGAAGCTCG+AGG + chr3.3:6454835-6454854 None:intergenic 40.0%
ATAAATGATGGTCTGTAGCC+TGG + chr3.3:6455410-6455429 None:intergenic 40.0%
ATGCATAATCGGCTACATGA+GGG + chr3.3:6455758-6455777 None:intergenic 40.0%
ATGTCCTCCCAAATATCCAT+AGG + chr3.3:6455939-6455958 None:intergenic 40.0%
CAACCTGATTCACAACAACA+TGG - chr3.3:6455375-6455394 MS.gene52006:intron 40.0%
CAATCTTGTCCTCAAGATTG+AGG + chr3.3:6458767-6458786 None:intergenic 40.0%
CACATCTTCTCAATAATGGC+TGG + chr3.3:6456514-6456533 None:intergenic 40.0%
CCAAGAATGTGAAGCAGTTA+AGG - chr3.3:6456759-6456778 MS.gene52006:intron 40.0%
CCACGAATTGTCCATTGTTT+GGG - chr3.3:6455546-6455565 MS.gene52006:intron 40.0%
CCTTAACTGCTTCACATTCT+TGG + chr3.3:6456762-6456781 None:intergenic 40.0%
CTCCTTCAATCTCGTATTGT+CGG + chr3.3:6454269-6454288 None:intergenic 40.0%
GAACTTCTAGACGAGTTACA+TGG - chr3.3:6456311-6456330 MS.gene52006:intron 40.0%
GAAGAAAATTCACCCAAGGT+GGG - chr3.3:6458890-6458909 MS.gene52006:CDS 40.0%
GAATAATGACGTGGACATAG+TGG - chr3.3:6458812-6458831 MS.gene52006:CDS 40.0%
GATACTCTTGCAACACTTGT+TGG + chr3.3:6457516-6457535 None:intergenic 40.0%
GATGTTGGAATTAGAAGAGG+AGG - chr3.3:6455329-6455348 MS.gene52006:intron 40.0%
GCTTGGTTGCATAAGTTCAT+TGG - chr3.3:6457229-6457248 MS.gene52006:CDS 40.0%
GGCCAAAATATGAAAGCAGA+AGG - chr3.3:6455615-6455634 MS.gene52006:CDS 40.0%
GGCTTACAGGATATTACAGA+AGG - chr3.3:6456792-6456811 MS.gene52006:intron 40.0%
GGTAAACTGTTGCATCATCT+GGG + chr3.3:6454425-6454444 None:intergenic 40.0%
GGTATGGGAAGATGTTACTA+TGG - chr3.3:6457723-6457742 MS.gene52006:CDS 40.0%
GTCTCAATATTGCTAGATGG+AGG - chr3.3:6455501-6455520 MS.gene52006:intron 40.0%
GTTATAGGCACACCTTTGAA+TGG + chr3.3:6458555-6458574 None:intergenic 40.0%
GTTTAAACAAGGAAGCTCGA+GGG + chr3.3:6454834-6454853 None:intergenic 40.0%
TACAGTCATTCTAGTGGTTG+TGG - chr3.3:6457780-6457799 MS.gene52006:CDS 40.0%
TACGAAAGAAGGATGGTACA+TGG - chr3.3:6456216-6456235 MS.gene52006:intron 40.0%
TCACCATGTTGTTGTGAATC+AGG + chr3.3:6455381-6455400 None:intergenic 40.0%
TCTAGAAGTTCATCCACAGT+TGG + chr3.3:6456302-6456321 None:intergenic 40.0%
TCTTGTTAACTGCTTCCGAT+TGG + chr3.3:6458029-6458048 None:intergenic 40.0%
TGAACCAAGTGCTAGTGAAA+TGG - chr3.3:6458676-6458695 MS.gene52006:CDS 40.0%
TGAAGAAAATTCACCCAAGG+TGG - chr3.3:6458889-6458908 MS.gene52006:CDS 40.0%
TGATTGCATTCTCTGTTAGG+AGG + chr3.3:6456038-6456057 None:intergenic 40.0%
TGCTGAGAAACCAAAGACTT+GGG - chr3.3:6458077-6458096 MS.gene52006:CDS 40.0%
TGGAAGACATCTCGTTGAAT+CGG + chr3.3:6454396-6454415 None:intergenic 40.0%
TGGCTATGAGGATATCTGTA+AGG + chr3.3:6456104-6456123 None:intergenic 40.0%
TGTCAGTGCCTGTATTATTG+AGG + chr3.3:6457420-6457439 None:intergenic 40.0%
TTGTCCTCAAGATTGAGGTT+TGG + chr3.3:6458762-6458781 None:intergenic 40.0%
TTTGTAAGGACTGATCCAAC+AGG + chr3.3:6457195-6457214 None:intergenic 40.0%
! AAGCAGTTAAGGGGTTTTCT+AGG - chr3.3:6456770-6456789 MS.gene52006:intron 40.0%
! AGCAGTTAAGGGGTTTTCTA+GGG - chr3.3:6456771-6456790 MS.gene52006:intron 40.0%
! AGGAACCAAAGCATCAACAT+CGG - chr3.3:6454525-6454544 MS.gene52006:CDS 40.0%
! ATCAATCTCTGGAAAGTTGC+TGG + chr3.3:6456479-6456498 None:intergenic 40.0%
! CCCCTTCTGCTTTCATATTT+TGG + chr3.3:6455620-6455639 None:intergenic 40.0%
! CGAGCTCTCGAATTAGATTT+TGG - chr3.3:6454790-6454809 MS.gene52006:CDS 40.0%
! CGAGTAACCATTTGAAACCA+TGG + chr3.3:6454736-6454755 None:intergenic 40.0%
! CTACCATACACTGCTTTGAA+TGG + chr3.3:6458168-6458187 None:intergenic 40.0%
! CTATCTGACACAATGGACTT+AGG + chr3.3:6457910-6457929 None:intergenic 40.0%
! GGAGAAATTCTCTTGATAGC+AGG + chr3.3:6455216-6455235 None:intergenic 40.0%
! GTGGATAATAAAGGTGGGTT+GGG + chr3.3:6455156-6455175 None:intergenic 40.0%
! TGGCTTTACAGTCATTCTAG+TGG - chr3.3:6457774-6457793 MS.gene52006:CDS 40.0%
!! AAGATTGCTTTTGAAGGGGA+GGG - chr3.3:6458780-6458799 MS.gene52006:CDS 40.0%
!! ACAGATGTGTCACTTGAGAT+AGG - chr3.3:6458342-6458361 MS.gene52006:CDS 40.0%
!! ATTAGTCAAGGGACTTGCTA+TGG + chr3.3:6456837-6456856 None:intergenic 40.0%
!! GAGGACAAGATTGCTTTTGA+AGG - chr3.3:6458774-6458793 MS.gene52006:CDS 40.0%
!! GGACAAGATTGCTTTTGAAG+GGG - chr3.3:6458776-6458795 MS.gene52006:CDS 40.0%
!! TATGGTGTCATTCGGTTCAA+AGG - chr3.3:6455459-6455478 MS.gene52006:intron 40.0%
!! TGAAGAAAGAGGCATTTGCA+TGG - chr3.3:6456861-6456880 MS.gene52006:intron 40.0%
!! TGGATAATAAAGGTGGGTTG+GGG + chr3.3:6455155-6455174 None:intergenic 40.0%
!!! ACTTGATTTTAGGAGCACCA+TGG - chr3.3:6455718-6455737 MS.gene52006:CDS 40.0%
!!! CAGCGCAATAATGTTTTGGT+AGG - chr3.3:6455588-6455607 MS.gene52006:CDS 40.0%
AACAAGCGTACAGTGTTGCA+GGG - chr3.3:6458642-6458661 MS.gene52006:CDS 45.0%
AACATCTTCCCATACCTGAG+TGG + chr3.3:6457719-6457738 None:intergenic 45.0%
AAGCTGGGGATGCGTTATTT+CGG - chr3.3:6458429-6458448 MS.gene52006:CDS 45.0%
ACAGCCTTGACAATTGAGGT+GGG + chr3.3:6455003-6455022 None:intergenic 45.0%
ACATCTTCCCATACCTGAGT+GGG + chr3.3:6457718-6457737 None:intergenic 45.0%
ACATGAGCACGTTGAGAGAA+GGG - chr3.3:6458854-6458873 MS.gene52006:CDS 45.0%
ACCAGATTCACAACCTGTGA+AGG - chr3.3:6456073-6456092 MS.gene52006:CDS 45.0%
ACCTTCACAGGTTGTGAATC+TGG + chr3.3:6456077-6456096 None:intergenic 45.0%
ACGTCCATTTCAGTCATGGA+TGG - chr3.3:6454759-6454778 MS.gene52006:CDS 45.0%
ACTGCTTTCAGAACCCATCA+AGG - chr3.3:6456410-6456429 MS.gene52006:intron 45.0%
AGAATGTCTGATCTGTCAGC+AGG - chr3.3:6457642-6457661 MS.gene52006:CDS 45.0%
AGCTGCTGTAGTTAATGGCA+GGG + chr3.3:6458589-6458608 None:intergenic 45.0%
AGGGGAACATAGGCTGTTAT+AGG + chr3.3:6458570-6458589 None:intergenic 45.0%
AGTAGAATACTTGGGACACG+TGG - chr3.3:6456673-6456692 MS.gene52006:intron 45.0%
AGTCAACATCCACCCAGATA+TGG - chr3.3:6455962-6455981 MS.gene52006:CDS 45.0%
AGTTAATGGCAGGGGAACAT+AGG + chr3.3:6458580-6458599 None:intergenic 45.0%
AGTTCATCCACAGTTGGCAT+AGG + chr3.3:6456296-6456315 None:intergenic 45.0%
ATATCTGGGTGGATGTTGAC+TGG + chr3.3:6455963-6455982 None:intergenic 45.0%
ATCTGTGGCCTAGCAAATAG+TGG + chr3.3:6457138-6457157 None:intergenic 45.0%
ATGCAATTGCGTAGGGAGAA+AGG - chr3.3:6455243-6455262 MS.gene52006:intron 45.0%
ATTGTTCAATCACGTCCGCT+TGG + chr3.3:6454312-6454331 None:intergenic 45.0%
CATTGAAAGGATTGGACAGG+TGG - chr3.3:6458464-6458483 MS.gene52006:CDS 45.0%
CCACTCATAATGCCCTTGAT+GGG + chr3.3:6456426-6456445 None:intergenic 45.0%
CCACTGGTAAACCCAAACAA+TGG + chr3.3:6455560-6455579 None:intergenic 45.0%
CCAGAGTCATGGCATTATCA+TGG - chr3.3:6457311-6457330 MS.gene52006:CDS 45.0%
CCATTAACTACAGCAGCTGA+AGG - chr3.3:6458591-6458610 MS.gene52006:CDS 45.0%
CCCAAACAATGGACAATTCG+TGG + chr3.3:6455549-6455568 None:intergenic 45.0%
CCTTCAGCTGCTGTAGTTAA+TGG + chr3.3:6458594-6458613 None:intergenic 45.0%
CGGTAAACTGTTGCATCATC+TGG + chr3.3:6454426-6454445 None:intergenic 45.0%
CTGCTGAGAAACCAAAGACT+TGG - chr3.3:6458076-6458095 MS.gene52006:CDS 45.0%
CTGCTTTCAGAACCCATCAA+GGG - chr3.3:6456411-6456430 MS.gene52006:intron 45.0%
CTGTTAGGAGGAAGTCCTTT+GGG + chr3.3:6456026-6456045 None:intergenic 45.0%
GAAAATGGTGCAACAGATGC+TGG - chr3.3:6456139-6456158 MS.gene52006:CDS 45.0%
GAAAGAAGGATGGTACATGG+AGG - chr3.3:6456219-6456238 MS.gene52006:intron 45.0%
GACAACAAAGTGGCCATATC+TGG + chr3.3:6455978-6455997 None:intergenic 45.0%
GAGTATCATGCTTCACCGAT+TGG - chr3.3:6457529-6457548 MS.gene52006:CDS 45.0%
GATGCATAATCGGCTACATG+AGG + chr3.3:6455759-6455778 None:intergenic 45.0%
GCAACTGGTAACAAGTAAGC+TGG + chr3.3:6455690-6455709 None:intergenic 45.0%
GCAGTCTTCTGTCTATCATC+TGG + chr3.3:6456395-6456414 None:intergenic 45.0%
GGATGTATACGTGCAGTTTC+CGG + chr3.3:6458507-6458526 None:intergenic 45.0%
GGCTTACAGGTTACAATTGC+CGG - chr3.3:6458485-6458504 MS.gene52006:CDS 45.0%
GGTGGATAATAAAGGTGGGT+TGG + chr3.3:6455157-6455176 None:intergenic 45.0%
TACACCCACCTCAATTGTCA+AGG - chr3.3:6454996-6455015 MS.gene52006:intron 45.0%
TAGAGCAAGAAGTGGTACCA+TGG - chr3.3:6454716-6454735 MS.gene52006:CDS 45.0%
TAGCTTTCCTATGCCAACTG+TGG - chr3.3:6456286-6456305 MS.gene52006:intron 45.0%
TATGGAGCCTGTAGTACCTA+TGG - chr3.3:6455920-6455939 MS.gene52006:CDS 45.0%
TATTGAGTACAAGCCAGGGA+AGG - chr3.3:6457264-6457283 MS.gene52006:CDS 45.0%
TCCAACCGATGTTGATGCTT+TGG + chr3.3:6454533-6454552 None:intergenic 45.0%
TCTGTTAGGAGGAAGTCCTT+TGG + chr3.3:6456027-6456046 None:intergenic 45.0%
TGACACAGCCTTGACAATTG+AGG + chr3.3:6455007-6455026 None:intergenic 45.0%
TGATGCTCTTTCCAGAGTCA+TGG - chr3.3:6457300-6457319 MS.gene52006:CDS 45.0%
TGCAAATGAGTCTGCCAAGT+AGG + chr3.3:6456572-6456591 None:intergenic 45.0%
TGCAGGCATTACTAGGACTA+TGG - chr3.3:6457558-6457577 MS.gene52006:CDS 45.0%
TGCTAGAAACAGATGCCTCA+GGG - chr3.3:6456975-6456994 MS.gene52006:intron 45.0%
TGCTTCACATTCTTGGGAAC+AGG + chr3.3:6456755-6456774 None:intergenic 45.0%
TGGTGATTGTGTTGAAGTGG+TGG + chr3.3:6454557-6454576 None:intergenic 45.0%
TGTGTTGCAATCTCCTCAAG+TGG + chr3.3:6455866-6455885 None:intergenic 45.0%
TTCCAATCGTGCAAATCGAG+TGG + chr3.3:6454350-6454369 None:intergenic 45.0%
TTGGCCAAATATGAAGTCGG+CGG - chr3.3:6457603-6457622 MS.gene52006:CDS 45.0%
TTGTTGCTCTGGCGTTTGTA+AGG + chr3.3:6457209-6457228 None:intergenic 45.0%
! AAAGCTTTGGCCCAAGTCTT+TGG + chr3.3:6458090-6458109 None:intergenic 45.0%
! AATGGTACTGGACATGTCGA+CGG + chr3.3:6454494-6454513 None:intergenic 45.0%
! ACCAAAGCATCAACATCGGT+TGG - chr3.3:6454529-6454548 MS.gene52006:CDS 45.0%
! ATCATGCTTCACCGATTGGA+GGG - chr3.3:6457533-6457552 MS.gene52006:CDS 45.0%
! ATTGAAGGGAGCTCGATTTG+TGG + chr3.3:6455094-6455113 None:intergenic 45.0%
! CCATGATAATGCCATGACTC+TGG + chr3.3:6457314-6457333 None:intergenic 45.0%
! CCATTGTTTGGGTTTACCAG+TGG - chr3.3:6455557-6455576 MS.gene52006:intron 45.0%
! GAGGAAAATGGACTCACACT+AGG + chr3.3:6456182-6456201 None:intergenic 45.0%
! GCTTACTTGTTACCAGTTGC+TGG - chr3.3:6455690-6455709 MS.gene52006:CDS 45.0%
! GTACCACTTCTTGCTCTAGA+TGG + chr3.3:6454714-6454733 None:intergenic 45.0%
! GTTGCCATTTCACTAGCACT+TGG + chr3.3:6458683-6458702 None:intergenic 45.0%
! TATCATGCTTCACCGATTGG+AGG - chr3.3:6457532-6457551 MS.gene52006:CDS 45.0%
! TGTCCATCTAGAGCAAGAAG+TGG - chr3.3:6454708-6454727 MS.gene52006:CDS 45.0%
!! AAGAACTCAGGCTTTGGAAC+CGG - chr3.3:6454460-6454479 MS.gene52006:CDS 45.0%
!! AATGCTTTGAAGGGCGTTAC+TGG - chr3.3:6455435-6455454 MS.gene52006:intron 45.0%
!! ACTGGCTTGCCATTATCTTG+TGG - chr3.3:6457754-6457773 MS.gene52006:CDS 45.0%
!! CAAGATTGCTTTTGAAGGGG+AGG - chr3.3:6458779-6458798 MS.gene52006:CDS 45.0%
!! GCATCTGTTTCTAGCACGAA+TGG + chr3.3:6456971-6456990 None:intergenic 45.0%
!! GGATAATAAAGGTGGGTTGG+GGG + chr3.3:6455154-6455173 None:intergenic 45.0%
!! TGAACCGCCGACTTCATATT+TGG + chr3.3:6457610-6457629 None:intergenic 45.0%
!! TTGAAGGGCGTTACTGGATA+TGG - chr3.3:6455441-6455460 MS.gene52006:intron 45.0%
!! TTGGGCCAAAGCTTTGAGTT+GGG - chr3.3:6458095-6458114 MS.gene52006:CDS 45.0%
!!! CTTTGAGTTGGGCAGAGTTT+TGG - chr3.3:6458106-6458125 MS.gene52006:CDS 45.0%
!!! GAACAAACTAGTTTTGCCGG+TGG - chr3.3:6457477-6457496 MS.gene52006:CDS 45.0%
!!! GCTGGAGCTGACTTGATTTT+AGG - chr3.3:6455708-6455727 MS.gene52006:CDS 45.0%
AAACGCCAGAGCAACAAGCT+TGG - chr3.3:6457212-6457231 MS.gene52006:CDS 50.0%
AAGTTGCTGGCGCATTAGTG+AGG + chr3.3:6456466-6456485 None:intergenic 50.0%
AATGGTGCAACAGATGCTGG+AGG - chr3.3:6456142-6456161 MS.gene52006:CDS 50.0%
ACAAAGTGGCCATATCTGGG+TGG + chr3.3:6455974-6455993 None:intergenic 50.0%
ACATGACTACACTGCCAGCA+GGG - chr3.3:6457671-6457690 MS.gene52006:CDS 50.0%
ACCAGAACGTAAGTCGAGCT+TGG + chr3.3:6456351-6456370 None:intergenic 50.0%
ACCCATGGAGGAAAGAACTC+AGG - chr3.3:6454448-6454467 MS.gene52006:CDS 50.0%
ACCTACTGCAGAGGCAACAT+GGG - chr3.3:6458707-6458726 MS.gene52006:CDS 50.0%
AGCCGAGATGCAATTGCGTA+GGG - chr3.3:6455236-6455255 MS.gene52006:intron 50.0%
AGCCTGAGTTCTTTCCTCCA+TGG + chr3.3:6454453-6454472 None:intergenic 50.0%
ATCAAGTCAGCTCCAGCAAC+TGG + chr3.3:6455705-6455724 None:intergenic 50.0%
CAACAGTTTACCGTCACCCA+TGG - chr3.3:6454433-6454452 MS.gene52006:CDS 50.0%
CACAGCCTTGACAATTGAGG+TGG + chr3.3:6455004-6455023 None:intergenic 50.0%
CACATGAGCACGTTGAGAGA+AGG - chr3.3:6458853-6458872 MS.gene52006:CDS 50.0%
CAGCAGTTGTTTGAGCTGCA+GGG - chr3.3:6457958-6457977 MS.gene52006:CDS 50.0%
CAGCTGCTGTAGTTAATGGC+AGG + chr3.3:6458590-6458609 None:intergenic 50.0%
CGAGGGCAATCATACAGAGA+GGG + chr3.3:6454817-6454836 None:intergenic 50.0%
CTCCCTACGCAATTGCATCT+CGG + chr3.3:6455241-6455260 None:intergenic 50.0%
CTCTGCCCAACTCAAAGCTT+TGG + chr3.3:6458103-6458122 None:intergenic 50.0%
CTGTAAGGCTTCACCTTCAC+AGG + chr3.3:6456089-6456108 None:intergenic 50.0%
GAACAAGCGTACAGTGTTGC+AGG - chr3.3:6458641-6458660 MS.gene52006:CDS 50.0%
GACGTGGACATAGTGGCAAA+TGG - chr3.3:6458819-6458838 MS.gene52006:CDS 50.0%
GCAACAGATACCTACTGCAG+AGG - chr3.3:6458698-6458717 MS.gene52006:CDS 50.0%
GCAGACTGGAGTTGCATTCT+AGG + chr3.3:6457067-6457086 None:intergenic 50.0%
GCCAATACCCACTCAGGTAT+GGG - chr3.3:6457708-6457727 MS.gene52006:CDS 50.0%
GCCACTCATAATGCCCTTGA+TGG + chr3.3:6456427-6456446 None:intergenic 50.0%
GCCTGAGTTCTTTCCTCCAT+GGG + chr3.3:6454452-6454471 None:intergenic 50.0%
GCTCTGTCCAACCGAGTTTA+TGG - chr3.3:6454898-6454917 MS.gene52006:CDS 50.0%
GCTGCTGTAGTTAATGGCAG+GGG + chr3.3:6458588-6458607 None:intergenic 50.0%
GGAGGAAAGAACTCAGGCTT+TGG - chr3.3:6454454-6454473 MS.gene52006:CDS 50.0%
GGCCGACAATACGAGATTGA+AGG - chr3.3:6454264-6454283 MS.gene52006:CDS 50.0%
GGGGGGTGGATAATAAAGGT+GGG + chr3.3:6455161-6455180 None:intergenic 50.0%
GTAGGGGGGGTGGATAATAA+AGG + chr3.3:6455165-6455184 None:intergenic 50.0%
GTCCAGTACCATTGTGTCAC+CGG - chr3.3:6454501-6454520 MS.gene52006:CDS 50.0%
GTGCTAGAAACAGATGCCTC+AGG - chr3.3:6456974-6456993 MS.gene52006:intron 50.0%
GTGGACATAGTGGCAAATGG+TGG - chr3.3:6458822-6458841 MS.gene52006:CDS 50.0%
GTTCTTTCCTCCATGGGTGA+CGG + chr3.3:6454446-6454465 None:intergenic 50.0%
TACCTACTGCAGAGGCAACA+TGG - chr3.3:6458706-6458725 MS.gene52006:CDS 50.0%
TAGCTCAACTGCACCACTTG+AGG - chr3.3:6455850-6455869 MS.gene52006:CDS 50.0%
TCACAAAGTGGTCCCACCTT+GGG + chr3.3:6458905-6458924 None:intergenic 50.0%
TCCAAGCTCGACTTACGTTC+TGG - chr3.3:6456347-6456366 MS.gene52006:intron 50.0%
TCCAGTACCATTGTGTCACC+GGG - chr3.3:6454502-6454521 MS.gene52006:CDS 50.0%
TCCCATACCTGAGTGGGTAT+TGG + chr3.3:6457712-6457731 None:intergenic 50.0%
TCGAGGGCAATCATACAGAG+AGG + chr3.3:6454818-6454837 None:intergenic 50.0%
TGAAAGCAGAAGGGGTGGTA+AGG - chr3.3:6455625-6455644 MS.gene52006:CDS 50.0%
TGAGATAGGCGACCAAGTGT+TGG - chr3.3:6458356-6458375 MS.gene52006:CDS 50.0%
TGCCAATACCCACTCAGGTA+TGG - chr3.3:6457707-6457726 MS.gene52006:CDS 50.0%
TGGTGCAGTTGAGCTACTTC+AGG + chr3.3:6455846-6455865 None:intergenic 50.0%
TTGCATCATCTGGGCAACGT+TGG + chr3.3:6454416-6454435 None:intergenic 50.0%
TTGCGCTGTATAGGTTCCAC+TGG + chr3.3:6455576-6455595 None:intergenic 50.0%
TTGGCTCATAGGTCGTGTAG+GGG + chr3.3:6455181-6455200 None:intergenic 50.0%
! AACTGCTTCCGATTGGCCAT+CGG + chr3.3:6458022-6458041 None:intergenic 50.0%
! AAGGGAGCTCGATTTGTGGA+TGG + chr3.3:6455090-6455109 None:intergenic 50.0%
! ACAACATGGTGACGAAGACC+AGG - chr3.3:6455389-6455408 MS.gene52006:intron 50.0%
! AGTTGGCTCATAGGTCGTGT+AGG + chr3.3:6455183-6455202 None:intergenic 50.0%
! CACCACTCGATTTGCACGAT+TGG - chr3.3:6454345-6454364 MS.gene52006:CDS 50.0%
! CTCGATTTGTGGATGGTCTG+TGG + chr3.3:6455083-6455102 None:intergenic 50.0%
! GAGTGGCTTGTGATGCCATT+TGG - chr3.3:6456440-6456459 MS.gene52006:intron 50.0%
! GTTGATGCTTTGGTTCCTCC+CGG + chr3.3:6454523-6454542 None:intergenic 50.0%
! GTTGGCTCATAGGTCGTGTA+GGG + chr3.3:6455182-6455201 None:intergenic 50.0%
! TCAGGGTGTTTCCGTAGATC+AGG - chr3.3:6456703-6456722 MS.gene52006:intron 50.0%
!! ACCTGAGTGGGTATTGGCAA+AGG + chr3.3:6457706-6457725 None:intergenic 50.0%
!! CCCATCAAGGGCATTATGAG+TGG - chr3.3:6456423-6456442 MS.gene52006:intron 50.0%
!! CTTGGGCCAAAGCTTTGAGT+TGG - chr3.3:6458094-6458113 MS.gene52006:CDS 50.0%
!! TGCAACCAAGCTTGTTGCTC+TGG + chr3.3:6457220-6457239 None:intergenic 50.0%
!!! AGGGGTTTTCTAGGGCTTAC+AGG - chr3.3:6456779-6456798 MS.gene52006:intron 50.0%
AAAGGCTGCAACAACCCTGC+TGG + chr3.3:6457688-6457707 None:intergenic 55.0%
AGTACCATTGTGTCACCGGG+AGG - chr3.3:6454505-6454524 MS.gene52006:CDS 55.0%
ATGCCTGCATGCCCTCCAAT+CGG + chr3.3:6457547-6457566 None:intergenic 55.0%
ATTGGCCATCGGATTGAGGG+TGG + chr3.3:6458011-6458030 None:intergenic 55.0%
CAAGCCAGGGAAGGAGAATG+TGG - chr3.3:6457273-6457292 MS.gene52006:CDS 55.0%
CACATGACTACACTGCCAGC+AGG - chr3.3:6457670-6457689 MS.gene52006:CDS 55.0%
CAGCCGAGATGCAATTGCGT+AGG - chr3.3:6455235-6455254 MS.gene52006:intron 55.0%
CAGTTTACCGTCACCCATGG+AGG - chr3.3:6454436-6454455 MS.gene52006:CDS 55.0%
CCCTCAATCCGATGGCCAAT+CGG - chr3.3:6458011-6458030 MS.gene52006:CDS 55.0%
CTACGCAATTGCATCTCGGC+TGG + chr3.3:6455237-6455256 None:intergenic 55.0%
CTCACAAAGTGGTCCCACCT+TGG + chr3.3:6458906-6458925 None:intergenic 55.0%
GAAACAGATGCCTCAGGGAC+TGG - chr3.3:6456980-6456999 MS.gene52006:intron 55.0%
GCAGCAGTTGTTTGAGCTGC+AGG - chr3.3:6457957-6457976 MS.gene52006:CDS 55.0%
GCATACCACCCTCAATCCGA+TGG - chr3.3:6458003-6458022 MS.gene52006:CDS 55.0%
GCCTTTGCCAATACCCACTC+AGG - chr3.3:6457702-6457721 MS.gene52006:CDS 55.0%
GCGCACGTCCATTTCAGTCA+TGG - chr3.3:6454755-6454774 MS.gene52006:CDS 55.0%
GGACACGTGGTGTCTGATCA+GGG - chr3.3:6456686-6456705 MS.gene52006:intron 55.0%
GGATTGGACAGGTGGCTTAC+AGG - chr3.3:6458472-6458491 MS.gene52006:CDS 55.0%
GGCGCATTAGTGAGGCCAAA+TGG + chr3.3:6456458-6456477 None:intergenic 55.0%
GGGGGGGTGGATAATAAAGG+TGG + chr3.3:6455162-6455181 None:intergenic 55.0%
GTGCAACAGATGCTGGAGGA+AGG - chr3.3:6456146-6456165 MS.gene52006:CDS 55.0%
TCCCATGTTGCCTCTGCAGT+AGG + chr3.3:6458711-6458730 None:intergenic 55.0%
TCCCGGTGACACAATGGTAC+TGG + chr3.3:6454506-6454525 None:intergenic 55.0%
TGGCTCATAGGTCGTGTAGG+GGG + chr3.3:6455180-6455199 None:intergenic 55.0%
! CCGATTGGCCATCGGATTGA+GGG + chr3.3:6458014-6458033 None:intergenic 55.0%
! GAGGGCATGCAGGCATTACT+AGG - chr3.3:6457551-6457570 MS.gene52006:CDS 55.0%
! TCCGATTGGCCATCGGATTG+AGG + chr3.3:6458015-6458034 None:intergenic 55.0%
!! GCACCATGGCTAGCTTCACT+TGG - chr3.3:6455732-6455751 MS.gene52006:CDS 55.0%
AGATGCCTCAGGGACTGGAG+TGG - chr3.3:6456985-6457004 MS.gene52006:intron 60.0%
ATGCCTCAGGGACTGGAGTG+GGG - chr3.3:6456987-6457006 MS.gene52006:intron 60.0%
GATGCCTCAGGGACTGGAGT+GGG - chr3.3:6456986-6457005 MS.gene52006:intron 60.0%
GCAGCCACATTCTCCTTCCC+TGG + chr3.3:6457280-6457299 None:intergenic 60.0%
GCTCATAGGTCGTGTAGGGG+GGG + chr3.3:6455178-6455197 None:intergenic 60.0%
GGCTCATAGGTCGTGTAGGG+GGG + chr3.3:6455179-6455198 None:intergenic 60.0%
GGGACACGTGGTGTCTGATC+AGG - chr3.3:6456685-6456704 MS.gene52006:intron 60.0%
GGGCCAAGTGAAGCTAGCCA+TGG + chr3.3:6455738-6455757 None:intergenic 60.0%
GGTTCCTCCCGGTGACACAA+TGG + chr3.3:6454512-6454531 None:intergenic 60.0%
TGCTGAGTTGCGACGCCAAG+CGG - chr3.3:6454294-6454313 MS.gene52006:CDS 60.0%
! GGTACTGGACATGTCGACGG+CGG + chr3.3:6454491-6454510 None:intergenic 60.0%
! TCACCGATTGGAGGGCATGC+AGG - chr3.3:6457541-6457560 MS.gene52006:CDS 60.0%
! TGGGGGCGGTGTTGAGTCAA+GGG - chr3.3:6457005-6457024 MS.gene52006:intron 60.0%
CATAGGTCGTGTAGGGGGGG+TGG + chr3.3:6455175-6455194 None:intergenic 65.0%
TGCCTCAGGGACTGGAGTGG+GGG - chr3.3:6456988-6457007 MS.gene52006:intron 65.0%
! GGGGCGGTGTTGAGTCAAGG+GGG - chr3.3:6457007-6457026 MS.gene52006:intron 65.0%
! GGGGGCGGTGTTGAGTCAAG+GGG - chr3.3:6457006-6457025 MS.gene52006:intron 65.0%
! GTGGGGGCGGTGTTGAGTCA+AGG - chr3.3:6457004-6457023 MS.gene52006:intron 65.0%
CATGTCGACGGCGGCTGTGC+CGG + chr3.3:6454482-6454501 None:intergenic 70.0%
CTCAGGGACTGGAGTGGGGG+CGG - chr3.3:6456991-6457010 MS.gene52006:intron 70.0%
CGCCCCCACTCCAGTCCCTG+AGG + chr3.3:6456993-6457012 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 6454262 6458932 6454262 ID=MS.gene52006
chr3.3 mRNA 6454262 6458932 6454262 ID=MS.gene52006.t1;Parent=MS.gene52006
chr3.3 exon 6457203 6458932 6457203 ID=MS.gene52006.t1.exon1;Parent=MS.gene52006.t1
chr3.3 CDS 6457203 6458932 6457203 ID=cds.MS.gene52006.t1;Parent=MS.gene52006.t1
chr3.3 exon 6455570 6456173 6455570 ID=MS.gene52006.t1.exon2;Parent=MS.gene52006.t1
chr3.3 CDS 6455570 6456173 6455570 ID=cds.MS.gene52006.t1;Parent=MS.gene52006.t1
chr3.3 exon 6454262 6454948 6454262 ID=MS.gene52006.t1.exon3;Parent=MS.gene52006.t1
chr3.3 CDS 6454262 6454948 6454262 ID=cds.MS.gene52006.t1;Parent=MS.gene52006.t1
Gene Sequence

>MS.gene52006

ATGGCCGACAATACGAGATTGAAGGAGATAACTGCTGAGTTGCGACGCCAAGCGGACGTGATTGAACAATCAGATGCAGCAAACACCACTCGATTTGCACGATTGGAAGAAATGCAAAAGGCATCAGATGACCGATTCAACGAGATGTCTTCCAACGTTGCCCAGATGATGCAACAGTTTACCGTCACCCATGGAGGAAAGAACTCAGGCTTTGGAACCGGCACAGCCGCCGTCGACATGTCCAGTACCATTGTGTCACCGGGAGGAACCAAAGCATCAACATCGGTTGGATCCACCACTTCAACACAATCACCATTTCAAGTAAGACATATCAAGCTTGAATTTCTGAGATTCAACGGTAAGAATGTTCTTGACTGGATATTTAAGGCTGAGCAGTTTTTTGGGTATTACAATACCCCAGATCCTGAGAGATTAATTATAGCTTCTGTCCATCTAGAGCAAGAAGTGGTACCATGGTTTCAAATGGTTACTCGCGCACGTCCATTTCAGTCATGGATGGAGTTTACGCGAGCTCTCGAATTAGATTTTGGTCCCTCTCTGTATGATTGCCCTCGAGCTTCCTTGTTTAAACTGAATCAAAAAAAATCTATAAATGAGTATTTTCTAGAATTCACTGCTCTGTCCAACCGAGTTTATGGTTTGAGTAATGATGCCCTTGTTGATTGTTTTGTTAGTGGATTGAAAGATGAAATACGCAGGGATGTTATGCTTCATACACCCACCTCAATTGTCAAGGCTGTGTCATTGGCAAAAGTCTTTGAAGAAAAAATTGAAGCTACTGCCAAACAAAATCTATACCACAGACCATCCACAAATCGAGCTCCCTTCAATCCAACTAAAATTGACCAAACACTAGTCACTGAAAAAGCCCCCAACCCACCTTTATTATCCACCCCCCCTACACGACCTATGAGCCAACTACAAAAAAACCCTGCTATCAAGAGAATTTCTCCAGCCGAGATGCAATTGCGTAGGGAGAAAGGACTGTGTTATTTTTGTGATGAGAAATTCTCATTTTCTCATAAATGCCCTAACAAACAAGTGATGATGTTGGAATTAGAAGAGGAGGCAGAGAGTATGATAGATACAATGCAACCTGATTCACAACAACATGGTGACGAAGACCAGGCTACAGACCATCATTTATCACTGAATGCTTTGAAGGGCGTTACTGGATATGGTGTCATTCGGTTCAAAGGATTTATTGGCCCAATTAATGTCTCAATATTGCTAGATGGAGGCAGTTCAGATAGTTTTGTCCAACCACGAATTGTCCATTGTTTGGGTTTACCAGTGGAACCTATACAGCGCAATAATGTTTTGGTAGGAAATGGCCAAAATATGAAAGCAGAAGGGGTGGTAAGGAAGTTATCTGTTAAAGTACAAGGCAATGAAATCATCGTACCAGCTTACTTGTTACCAGTTGCTGGAGCTGACTTGATTTTAGGAGCACCATGGCTAGCTTCACTTGGCCCTCATGTAGCCGATTATGCATCTTCTCAACTAAAATTTTATCTGGATGGCAAGTTTATTACTTTGCAGGGAGAAACAGAGAACAAGCCTGAAGTAGCTCAACTGCACCACTTGAGGAGATTGCAACACACTGATTCAATTTCTGAGATGTTTGCACTACAACATATGGAGCCTGTAGTACCTATGGATATTTGGGAGGACATTCCAGTCAACATCCACCCAGATATGGCCACTTTGTTGTCTACTTATAGAGACATCTTTCAAATTCCCAAAGGACTTCCTCCTAACAGAGAATGCAATCATGAGATTTTGCTCAAACCAGATTCACAACCTGTGAAGGTGAAGCCTTACAGATATCCTCATAGCCAGAAAGAAGAAATTGAGAAAATGGTGCAACAGATGCTGGAGGAAGGCATTATACAGCCTAGTGTGAGTCCATTTTCCTCTCCTATTATTTTGGTACGAAAGAAGGATGGTACATGGAGGTGTTGTACAGATTATAGAGCTTTGAATGCTATCACAGTTAAAGATAGCTTTCCTATGCCAACTGTGGATGAACTTCTAGACGAGTTACATGGTGCAAAGTACTTTTCCAAGCTCGACTTACGTTCTGGTTATCATCAAATTCTAGTGCATCCAGATGATAGACAGAAGACTGCTTTCAGAACCCATCAAGGGCATTATGAGTGGCTTGTGATGCCATTTGGCCTCACTAATGCGCCAGCAACTTTCCAGAGATTGATGAATAAAATTTTCCAGCCATTATTGAGAAGATGTGTCTTGGTCTTCTTTGATGATATTTTAATATATAGTCCTACTTGGCAGACTCATTTGCAGCAAGTTGAGTTAGTATTTCAGATCCTTAGTCAAAATGCATTGTTTGCTAAGTTATCTAAATGCTCTTTTGGCTTAGCTGAAGTAGAATACTTGGGACACGTGGTGTCTGATCAGGGTGTTTCCGTAGATCAGGCCAAAGTAAAAGCTGTTGTAGAATGGCCTGTTCCCAAGAATGTGAAGCAGTTAAGGGGTTTTCTAGGGCTTACAGGATATTACAGAAGGTTTATCAAGGCATATGCTACCATAGCAAGTCCCTTGACTAATCTATTGAAGAAAGAGGCATTTGCATGGACTGAAGATGCTCAAATAGCTTTTGATAAATTGAAGCAGGTCTTAACTACAGCCCCTGTACTTAATCTTCCTGATTTTTCACTACCATTCGTGCTAGAAACAGATGCCTCAGGGACTGGAGTGGGGGCGGTGTTGAGTCAAGGGGGTCACCCTATAGCATTCTTTTCTAAAAAGATGGCACCTAGAATGCAACTCCAGTCTGCTTATATTAGAGAGTTCTATGCTATAACTGCAGCCTTAGCAAAATTTCGCCACTATTTGCTAGGCCACAGATTTATAATAAGAACAGATCAGAAGAGTTTAAAAAGCCTGTTGGATCAGTCCTTACAAACGCCAGAGCAACAAGCTTGGTTGCATAAGTTCATTGGTTATGATTTTCATATTGAGTACAAGCCAGGGAAGGAGAATGTGGCTGCTGATGCTCTTTCCAGAGTCATGGCATTATCATGGTCATCAGTTGAGAACTCATTTCTGAAGCAATTGAAAGCTGAACTTGCAAAGAATGATCACTTACAAACTATAGTGCAACAATGCCTCAATAATACAGGCACTGACAGTAACTACACAGTGAAAGAAGGTTTATTATACTGGAAGAACAAACTAGTTTTGCCGGTGGATAGTTCATTAATCCAACAAGTGTTGCAAGAGTATCATGCTTCACCGATTGGAGGGCATGCAGGCATTACTAGGACTATGGCACGAATAAGTGCTGAATTTTATTGGCCAAATATGAAGTCGGCGGTTCACAAGTTCATCACAGAATGTCTGATCTGTCAGCAGGCTAAACACATGACTACACTGCCAGCAGGGTTGTTGCAGCCTTTGCCAATACCCACTCAGGTATGGGAAGATGTTACTATGGATTTTATTACTGGCTTGCCATTATCTTGTGGCTTTACAGTCATTCTAGTGGTTGTGGATAGATTGACTAAGTACGCTCATTTCATGCCATTAAAGCCTGACTATTCTAGTAAATCTGTTGCTGAAGTTTTTATGACTAATATCGTCAAATTACATGGCGTACCTAAGTCCATTGTGTCAGATAGAGATAAAGTGTTTACAAGTAAATTTTGGCAGCAGTTGTTTGAGCTGCAGGGCACTACTTTGTCAATGAGTTCAGCATACCACCCTCAATCCGATGGCCAATCGGAAGCAGTTAACAAGACTTTAGAAATGTATTTGAGGTGCATTACTGCTGAGAAACCAAAGACTTGGGCCAAAGCTTTGAGTTGGGCAGAGTTTTGGTACAATACATCGTTTCACACTAGCATTGGTATGACACCATTCAAAGCAGTGTATGGTAGAGATCCTCCAAAGTTGATTCGATATGTTCCTAATTCTGGAGATACTCTTAATCTGCAGCAACAACTGATAGAGAGAGATCAGTTACTTCAACAATTGAAAGCTAATCTGCAGAAGGCACAACAAACTATGAAAACACAAGCTGATAGAAAGCGAACAGATGTGTCACTTGAGATAGGCGACCAAGTGTTGGTTAAATTGCAACCATATAGACAAAATTCAGTGGCCTTGAGAAAGAATCAAAAGCTGGGGATGCGTTATTTCGGTCCATTTAAAATCATTGAAAGGATTGGACAGGTGGCTTACAGGTTACAATTGCCGGAAACTGCACGTATACATCCTGTTTTCCACATTTCTCAACTTAAACCATTCAAAGGTGTGCCTATAACAGCCTATGTTCCCCTGCCATTAACTACAGCAGCTGAAGGACCAATATTAGCTCCTGAATGTATATTGAACAAGCGTACAGTGTTGCAGGGAACTCAACAAGTGAACCAAGTGCTAGTGAAATGGCAACAGATACCTACTGCAGAGGCAACATGGGAGAATGAGCAAGACATAGCTGAGAATTATCCAAACCTCAATCTTGAGGACAAGATTGCTTTTGAAGGGGAGGGTAATGTAATGAATAATGACGTGGACATAGTGGCAAATGGTGGAAGTGAAACACATGAGCACGTTGAGAGAAGGGTGAGTAACCGTTTGAAGAAAATTCACCCAAGGTGGGACCACTTTGTGAGAAAGTAA
Protein sequence

>MS.gene52006.t1

MADNTRLKEITAELRRQADVIEQSDAANTTRFARLEEMQKASDDRFNEMSSNVAQMMQQFTVTHGGKNSGFGTGTAAVDMSSTIVSPGGTKASTSVGSTTSTQSPFQVRHIKLEFLRFNGKNVLDWIFKAEQFFGYYNTPDPERLIIASVHLEQEVVPWFQMVTRARPFQSWMEFTRALELDFGPSLYDCPRASLFKLNQKKSINEYFLEFTALSNRVYGLSNDALVDCFVSGLKDEIRRDVMLHTPTSIVKAVSLAKVFEEKIEATAKQNLYHRPSTNRAPFNPTKIDQTLVTEKAPNPPLLSTPPTRPMSQLQKNPAIKRISPAEMQLRREKGLCYFCDEKFSFSHKCPNKQVMMLELEEEAESMIDTMQPDSQQHGDEDQATDHHLSLNALKGVTGYGVIRFKGFIGPINVSILLDGGSSDSFVQPRIVHCLGLPVEPIQRNNVLVGNGQNMKAEGVVRKLSVKVQGNEIIVPAYLLPVAGADLILGAPWLASLGPHVADYASSQLKFYLDGKFITLQGETENKPEVAQLHHLRRLQHTDSISEMFALQHMEPVVPMDIWEDIPVNIHPDMATFQGGHPIAFFSKKMAPRMQLQSAYIREFYAITAALAKFRHYLLGHRFIIRTDQKSLKSLLDQSLQTPEQQAWLHKFIGYDFHIEYKPGKENVAADALSRVMALSWSSVENSFLKQLKAELAKNDHLQTIVQQCLNNTGTDSNYTVKEGLLYWKNKLVLPVDSSLIQQVLQEYHASPIGGHAGITRTMARISAEFYWPNMKSAQQLIERDQLLQQLKANLQKAQQTMKTQADRKRTDVSLEIGDQVLVKLQPYRQNSVALRKNQKLGMRYFGPFKIIERIGQVAYRLQLPETARIHPVFHISQLKPFKGVPITAYVPLPLTTAAEGPILAPECILNKRTVLQGTQQVNQVLVKWQQIPTAEATWENEQDIAENYPNLNLEDKIAFEGEGNVMNNDVDIVANGGSETHEHVERRVSNRLKKIHPRWDHFVRK