AlfalfaGEDB | MS.gene52239

M. sativa cultivar XinJiangDaYe / MS.gene52239

KEGG: K14500
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52239.t1	XP_003623929.1	98.6	492	7	0	1	492	1	492	2.50E-282	980.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52239.t1	Q9FHD7	76.3	486	114	1	1	486	1	485	2.3e-220	766.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52239.t1	G7L3M7	98.6	492	7	0	1	492	1	492	1.8e-282	980.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene46108	MS.gene52239	PPI
MS.gene52239	MS.gene055205	PPI
MS.gene89324	MS.gene52239	PPI
MS.gene89800	MS.gene52239	PPI
MS.gene91577	MS.gene52239	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene52239.t1	MTR_7g077150	98.577	492	7	0	1	492	1	492	1016
MS.gene52239.t1	MTR_8g031030	84.756	492	74	1	1	492	1	491	880
MS.gene52239.t1	MTR_8g098370	75.103	486	118	3	1	484	1	485	760
MS.gene52239.t1	MTR_4g020070	70.757	489	140	1	1	486	1	489	724
MS.gene52239.t1	MTR_4g065003	68.776	490	149	2	1	486	1	490	711
MS.gene52239.t1	MTR_8g098370	76.341	410	94	3	1	408	1	409	649
MS.gene52239.t1	MTR_8g098370	78.385	384	82	1	101	484	1	383	638
MS.gene52239.t1	MTR_5g098970	64.254	456	157	3	40	490	68	522	607
MS.gene52239.t1	MTR_4g098740	61.319	455	173	1	39	490	43	497	593
MS.gene52239.t1	MTR_8g098370	77.714	350	77	1	135	484	1	349	578

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene52239.t1	AT4G00710	77.033	492	110	3	1	492	1	489	793
MS.gene52239.t1	AT4G00710	77.033	492	110	3	1	492	1	489	793
MS.gene52239.t1	AT5G41260	76.337	486	114	1	1	486	1	485	792
MS.gene52239.t1	AT1G63500	76.337	486	114	1	1	486	1	485	782
MS.gene52239.t1	AT5G59010	70.961	489	135	2	1	486	1	485	729
MS.gene52239.t1	AT3G54030	68.635	491	145	3	1	486	1	487	698
MS.gene52239.t1	AT1G01740	68.247	485	145	4	1	485	1	476	674
MS.gene52239.t1	AT1G01740	68.247	485	145	4	1	485	1	476	674
MS.gene52239.t1	AT1G01740	66.804	485	144	3	1	485	1	468	658
MS.gene52239.t1	AT4G35230	64.693	456	156	2	39	490	56	510	619

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Find 108 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAGGATTGTTGTTAAG+AGG	0.421429	7.4:-28740845	MS.gene52239:CDS
AAAGTCGATAGTGGCTGCTT+TGG	0.425243	7.4:-28737647	MS.gene52239:CDS
AACGTAAATTCCCGAAATGA+AGG	0.506432	7.4:+28740972	None:intergenic
AAGACGCAATGTGCCATAGA+GGG	0.566632	7.4:+28736228	None:intergenic
AAGCTATATATTACACTTTC+TGG	0.150839	7.4:+28738123	None:intergenic
AATAAGATGACTTACATGAC+TGG	0.525733	7.4:+28738056	None:intergenic
AATCCTAGGCTTTCAAGTTT+TGG	0.260615	7.4:-28739292	MS.gene52239:CDS
AATGCTCACAGATTCTTGTC+TGG	0.425641	7.4:-28737758	MS.gene52239:CDS
AATGTGGACGGATCAAATGC+AGG	0.570332	7.4:-28736970	MS.gene52239:CDS
ACACCAGTTCTGAGATACTC+TGG	0.545585	7.4:+28739211	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAGAGTCGTAAAAATC+CGG	+	chr7.4:28739130-28739149	None:intergenic	30.0%
AAATAAGTGAACCGTAGTAA+AGG	+	chr7.4:28740570-28740589	None:intergenic	30.0%
AACATTGTTAAACTGCAAGA+AGG	+	chr7.4:28739053-28739072	None:intergenic	30.0%
AATAAGATGACTTACATGAC+TGG	+	chr7.4:28739240-28739259	None:intergenic	30.0%
ACATTGTTAAACTGCAAGAA+GGG	+	chr7.4:28739052-28739071	None:intergenic	30.0%
AGTATTGTCAGTATTATGCT+AGG	-	chr7.4:28738944-28738963	MS.gene52239:intron	30.0%
AGTTAAAGAGTGGAGTTATA+AGG	+	chr7.4:28738994-28739013	None:intergenic	30.0%
ATAACATATTGTTGCAACCA+TGG	+	chr7.4:28736949-28736968	None:intergenic	30.0%
ATAAGATGACTTACATGACT+GGG	+	chr7.4:28739239-28739258	None:intergenic	30.0%
CAAAGATCAAATGTGATCAA+TGG	-	chr7.4:28739793-28739812	MS.gene52239:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	28736115	28741200	28736115	ID=MS.gene52239
chr7.4	mRNA	28736115	28741200	28736115	ID=MS.gene52239.t1;Parent=MS.gene52239
chr7.4	exon	28741119	28741200	28741119	ID=MS.gene52239.t1.exon1;Parent=MS.gene52239.t1
chr7.4	CDS	28741119	28741200	28741119	ID=cds.MS.gene52239.t1;Parent=MS.gene52239.t1
chr7.4	exon	28740806	28741026	28740806	ID=MS.gene52239.t1.exon2;Parent=MS.gene52239.t1
chr7.4	CDS	28740806	28741026	28740806	ID=cds.MS.gene52239.t1;Parent=MS.gene52239.t1
chr7.4	exon	28740066	28740201	28740066	ID=MS.gene52239.t1.exon3;Parent=MS.gene52239.t1
chr7.4	CDS	28740066	28740201	28740066	ID=cds.MS.gene52239.t1;Parent=MS.gene52239.t1
chr7.4	exon	28739404	28739537	28739404	ID=MS.gene52239.t1.exon4;Parent=MS.gene52239.t1
chr7.4	CDS	28739404	28739537	28739404	ID=cds.MS.gene52239.t1;Parent=MS.gene52239.t1
chr7.4	exon	28739215	28739320	28739215	ID=MS.gene52239.t1.exon5;Parent=MS.gene52239.t1
chr7.4	CDS	28739215	28739320	28739215	ID=cds.MS.gene52239.t1;Parent=MS.gene52239.t1
chr7.4	exon	28738071	28738156	28738071	ID=MS.gene52239.t1.exon6;Parent=MS.gene52239.t1
chr7.4	CDS	28738071	28738156	28738071	ID=cds.MS.gene52239.t1;Parent=MS.gene52239.t1
chr7.4	exon	28737624	28737812	28737624	ID=MS.gene52239.t1.exon7;Parent=MS.gene52239.t1
chr7.4	CDS	28737624	28737812	28737624	ID=cds.MS.gene52239.t1;Parent=MS.gene52239.t1
chr7.4	exon	28737185	28737340	28737185	ID=MS.gene52239.t1.exon8;Parent=MS.gene52239.t1
chr7.4	CDS	28737185	28737340	28737185	ID=cds.MS.gene52239.t1;Parent=MS.gene52239.t1
chr7.4	exon	28736890	28737003	28736890	ID=MS.gene52239.t1.exon9;Parent=MS.gene52239.t1
chr7.4	CDS	28736890	28737003	28736890	ID=cds.MS.gene52239.t1;Parent=MS.gene52239.t1
chr7.4	exon	28736115	28736369	28736115	ID=MS.gene52239.t1.exon10;Parent=MS.gene52239.t1
chr7.4	CDS	28736115	28736369	28736115	ID=cds.MS.gene52239.t1;Parent=MS.gene52239.t1

Gene Sequence

>MS.gene52239

ATGGGGATTCAGTGCTCCAGCTTGGTACCATGCTGTTTGGATTCACAAGTTAAAGCATCTGTTCCTGAAGTTCCAGGTGCTGGTAAGTAAAAATGATACACTGTAGTACATTCTGTTATGCTGATTAAACTATTATCGATACTTCATTTGTGTTTATTGTGGCGTCTGTTGCAGAAAATGAGGATAGAATTGAGACCAATGATGGACCTTCATTTCGGGAATTTACGTTGGAGCAACTTAATAACGCAACGTCCGGTTTTAATGTTGAGAATATAGTTTCTGAACATGGAGAAAAGGCTCCAAATGTTGTTTATAAAGGGAAGATGGAGAATCAAACGAGGATTGTTGTTAAGAGGTTTAATAGAAGTGCTTGGCCCGATGCTCGTCAGTTTTTGGTAAATTTTATCTTTTTTCTTTTTAATAACTTCTTCAAACATACTCTTAAACTTTCAATTCTTGTGTTCAAGACCTTACACTACACAAAACAGCGTTTCAAGCATGAAATGCCGTTAATGGGAACATGCTAGTGTGCTTGTGTAAGTTGTGTTTAGTGATTAAATCGTGACATCACTTATAAGTATGTGTTGGGTATGACTCATTGTTTACTGATAAGTGAAAAGGCCGTCTGAGTGGTACGGTTTACGGGTAATCTTGTAAAGTGTAAACTAGACTGTAGTATTTAAATGCAAGCTGTACTCTGTAGTCCCTAAGCTTGAATAATCGAAAGGTATTGCAGCTGCTCTGCAATCGGAGACGTAGGCACAATTGGCTGAACCATGTCAAATGTTGTGTGTTCTTTGTTTGCATTTTTTGTATCTTTTTACTGTTGAACCATGGTTGCAACAATATGTTATCCATGATATTCATAACAGTCAATAAAATGGTTAAGTTTGATTATTTTTCTGAAGCTAGTGCACAAAGTTGCGCTGGTATGTTTTCTTTTGACTCTGTCCTTTTCAGTTTCAATTATTTAATGCGAACAAATTTTGATAACTGTAGGAGGAAGCTAGATTGGTCGGTCAGCTTCGTAGCGAAAGATTGGCAAATTTGCTTGGATGTTGTTGTGAAGACGATGAGAGGTTGCTTGTGGCTGAATATATGCCAAACGAAACACTTGCAAAACACCTTTTCCACTGTAATAGCTCATTTCATGCATATGTCATCATTTCTTTTTCTTATTTTTTTTTGAAGAGATTTCTTTTTCATATTTGAAATCAGATCAGTGTGAAGTAATTGTTTATCTTTTCATTTTTTTATTGATCATCGGCTTTGTTATGAGTCAATACTAAGGCTTCATTGGTGTATAGTATGGGATTAGTACCAAAGCCATCATCACAATTCAATTTTTTTCGTTTGAAATTTCATAATGTTCACCATTTTAAGGAAAGTACTTATTTTAAAGTACTAAGTTATCAACAAAAGTAGCATCAACTATTACTAAATTTATGCAGAGAAATAATTTCGAGGTGTGAAAATCATCTTGTAAGGGTGAAACCATTTTTATTTATTTTTAATTTTGAAGGTGAGAACTCAAACAGTTAAACTGTGGCATTCAAACTCTAAACAAAACATTATGATGTTTGAGCCTTTCTCTTTTGAGAACCTGTCTTCTTTGATACCAATGTCATGATTGCATTGTTGAAGCGGTATGTGTCTATGTCAGGGGATTCTCAACCGATGAAATGGGCAATGCGACTCAGAGTTGTTCTACATCTTGCAGAAGCTCTAGAATACTGCACAAGCAATGGTCGTGCCCTCTATCATGACCTTAATGCATATAGAGTTCTATTTGATGAGGTAAGTTTTGCACTCCACTTCTTAATACGTTTTTAACATAATTTGATTAATATAAGCAGTGAATAATATGTTAATATTTACAGGACGGTAATCCTAGGCTTTCAAGTTTTGGCCTTATGAAGAATAGTAGGGACGGAAAAAGTTATAGCACAAATTTGGCGTTTACTCCTCCAGAGTATCTCAGAACTGGTGTGTCATATTTCTTTAATGCTATGGTTTTATTTGAATTAATATTAAGAGAAGTTATGATACATTTAGTATTTCAAAATTGTTTCATGAACTGAATACAATACCATTCTCCGTGTGTCAAATAACAGTTTAAAAAAGGTTAAAGTGACTGCTGAACAGATTATTGAATTCATGAGTTGCAAAAGTCCAACTTCGATTAAACATAAAGTAGATCTTAAACGATGAAGAAGTGTTACAATGATGCTTAAGTTCGCTTAAATTTGTTTCATTTTTCTTATGTAACCAAAAAAAGGAGACAGATTCTGTGGATGTATTGTATATTTTACCTGAAGTCTAAGCTCATTCCATACTCAAGAATCAATTTATAATAGGTTTAATTATTCTGTTCGTCCTCAAACTATTTGGAAAATTTTAAATAAGTCATGAATTAAAAAATTTATAATTGAGTCCCTGAATTTGTCTGAAGTATTTAATTAGATCCTTGAACTATTTTTTTAATCAAGCCGCTGAACTCTTGAATAATTTCTAACTAGGTTCCTCCCAAAATTTTAAATGATTTTAATTAGGGCCCTAAACTCTCGAATAATTTGTATTTGGGTCCCTAAGTTTAGGAACCTAACTCCAAATTTTTTGAAGTTTAGAACTTAATTAAAACTTTTTAGTTTAAGGCCCTAATTACAAACTACTAACAATTTCAGGGATCCAATTAGTTTAGGGACCTGTTTAAAAATCCTCAGACAGTTCAGGGACTACGAAGTAATTAAACCTAATATATTCCGTTATAAGAAGGCATAATATGTGCATGGTTATTTATTTATTTATTTTTTGTAACGGAAAAATGTTAGTATTGTCAGTATTATGCTAGGAGTGGGGGATCAAACCCTCGACCTCCTTATAACTCCACTCTTTAACTCCCTCACTCCAGCCGATGTGCATGATTATTAGTTGCCCTTCTTGCAGTTTAACAATGTTTAACAGAAATCCTGTCTTGCATTATAACAAATATTTTGTAAAAATTGAGTGATACCGGATTTTTACGACTCTTCTTTGTTCTGTAGGGAGAGTAACACCAGAAAGTGTAATATATAGCTTTGGCACTCTTTTGCTTGACCTTCTTAGTGGGAAGCATATCCCTCCCAGTCATGTAAGTCATCTTATTTTGGGGAAAATAACTCTCTCTCACCTATATCCTCCTAAAAGAAGGAAAGGAATGAATAAAAGTAGATAAATGTTGTAAAACTTTATTAATTATTAATTTATTACTTAATTCCAATTGATAAAAATATTTACCATTGATTTTTGAAGTTGAAGATAGCGTAAATTTGACTCCATGTTTCATTTAGTATCCATATTTGTATATTTATACGTACTTGAATACCTGGTTTGAATTTTTTTGGAGCAGGCCCTTGATTTGATTCGCGACAGAAATATTCAAATGCTCACAGATTCTTGTCTGGAAGGACAATTTTCTGAAGATGATGGGACTGAGTTGGTGCGGTTGGCATCTCGTTGTTTACAGTATGAACCTAGAGAACGACCTAATACAAAGTCGATAGTGGCTGCTTTGGCTCCTCTTCAAAAAGAAACAGAGGTGTGGTCTATTGTTATTGTGTGATAGTAATTAGCCAAGTATCACTTCTTAGTAGTAAGCTTGAAAAATACCACTATGCAGGTTTTCTTTCAGAATCAAGGCAAAGATCAAATGTGATCAATGGCTTTTCTATTAATTTATTTTCCTATATTCCTACTTACATATCTTGGTGCACACATGAATGACTTTCATGAAAAAAAACAGAACACAACTAACCAAGCTTGGAAGTTCTACTCCTGATTATTTTGTCTAACCAAGATATTTCCTACTAATTTCTTTCTAGGTTCCTTCCCACTCATTGATGGGTATCCAACATAGTGCTACTATTTCTGCTTCCTTGTCCCCACTCGGCGATGCGTGTTCAAGAAAGGACTTGACTGCCATACATGAAGTTCTCGAAAATATTGGTTATAAAGATGATGATGGAGTGGCAAATGAGGTTTTAATCTATTACTACATTCCTTTTAATATATCTCTCAAAATATTACATTCTTTATTAATTTTTATATTTCTCATGTTTATTAACGTGCAATATATTTACTCTTACAAACTATGAAATGATATATTGTCCATTATTTTCTTCGGATGCTAACCTGTGCGTAATCTTCCCTGAACTGCAGTTATCTTTCCAAATGTGGACGGATCAAATGCAGGACTCACTAAATTGTAAGCAAAAAGGAGACGCTGCGTTCCGGCACAAAGACTTCAAACTTGCAATAGAGTGCTACACACAGGTAGTTTTTTTGTTTTGTTTTGTATTCTTAACTTTTCGCATGTTACAGAATATATCCGTCAATATTCAACAGTTGTTGCTGATGCAATGTTTTAAAAACCAAACCGAACTTGATGGTTCAACTGGTAGAACATTGTACTGTCCTTTACTACGGTTCACTTATTTTGGCGCTTCAATCACGGTTTCATCTTGGTTCGGGCGGTTTAAGACTGTTGAACCATGATCCAGAGGTCCCGTCAGTTCGACGCTTGATTTGGTTTTTAACACATTGGTTTGATGTGAGATTTTCAGCATGATGAAAAATGCTTTTGATGTCCAACTTGAATTATGCATCAATATGTATATGTGGTTAGTATAATAATAAAGTAATTGATTCTTATATTCGATTCTGTCTCAAGTCAATGAAGGAAGCATTTCAGTAGCACTTTTGGATCCTTCCTATTTAGCAGTTATATTTGACATTTGATTTGGTTCTTTTTTATTTTATTTTGTTTGATGAGAGTTCACTGTTTCACATGTAGTTCATTGATGTTGGAACGATGGTTTCTCCAACTGTACATGCACGTCGCAGCTTGTGTTATCTCATCAACGACATGCCTCAAGAAGCAATGAACGACGCGATGCAAGCGCAAGTAATTTCCCCTCTATGGCACATTGCGTCTTATCTTCAATCTGTCTCTTTGTCTGGGCTAGGGATGGTGAACGAAGCGCAAGTCGCACTTATGGAGGGAACAACGCTGGAAGAGAAGCGAAACGCACCTACCAGAAAAAAGTGA

Protein sequence

>MS.gene52239.t1

MGIQCSSLVPCCLDSQVKASVPEVPGAENEDRIETNDGPSFREFTLEQLNNATSGFNVENIVSEHGEKAPNVVYKGKMENQTRIVVKRFNRSAWPDARQFLEEARLVGQLRSERLANLLGCCCEDDERLLVAEYMPNETLAKHLFHWDSQPMKWAMRLRVVLHLAEALEYCTSNGRALYHDLNAYRVLFDEDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQMLTDSCLEGQFSEDDGTELVRLASRCLQYEPRERPNTKSIVAALAPLQKETEVPSHSLMGIQHSATISASLSPLGDACSRKDLTAIHEVLENIGYKDDDGVANELSFQMWTDQMQDSLNCKQKGDAAFRHKDFKLAIECYTQFIDVGTMVSPTVHARRSLCYLINDMPQEAMNDAMQAQVISPLWHIASYLQSVSLSGLGMVNEAQVALMEGTTLEEKRNAPTRKK