Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52352.t1 | XP_013460855.1 | 98.3 | 346 | 5 | 1 | 1 | 346 | 1 | 345 | 7.30E-188 | 666.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52352.t1 | Q6MEW4 | 60.6 | 221 | 87 | 0 | 97 | 317 | 4 | 224 | 1.3e-76 | 288.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52352.t1 | A0A072UYQ0 | 98.3 | 346 | 5 | 1 | 1 | 346 | 1 | 345 | 5.2e-188 | 666.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056609 | MS.gene52352 | -0.842494 | 2.50E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52352.t1 | MTR_3g074040 | 98.266 | 346 | 5 | 1 | 1 | 346 | 1 | 345 | 0.0 | 705 |
| MS.gene52352.t1 | MTR_8g091330 | 79.842 | 253 | 51 | 0 | 93 | 345 | 66 | 318 | 1.60e-156 | 442 |
| MS.gene52352.t1 | MTR_8g091330 | 79.842 | 253 | 51 | 0 | 93 | 345 | 74 | 326 | 1.79e-156 | 442 |
| MS.gene52352.t1 | MTR_8g091330 | 80.000 | 240 | 48 | 0 | 106 | 345 | 1 | 240 | 7.15e-150 | 422 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52352.t1 | AT1G22170 | 73.089 | 327 | 87 | 1 | 19 | 344 | 1 | 327 | 6.13e-179 | 499 |
| MS.gene52352.t1 | AT1G22170 | 73.089 | 327 | 87 | 1 | 19 | 344 | 1 | 327 | 6.13e-179 | 499 |
| MS.gene52352.t1 | AT1G78050 | 72.000 | 325 | 79 | 4 | 25 | 343 | 9 | 327 | 1.31e-171 | 480 |
Find 80 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACACCGCTTCTGATATTT+TGG | 0.174047 | 3.1:-60594826 | None:intergenic |
| ATTTATCATACTTGATTTCT+TGG | 0.211753 | 3.1:-60595017 | None:intergenic |
| ACGACTCACCGTGTCGAATA+AGG | 0.265042 | 3.1:-60595223 | None:intergenic |
| CTACCTTCTTACGGCGGTGC+TGG | 0.280926 | 3.1:-60595412 | None:intergenic |
| ACATACTTGGTCTCTGAAAT+AGG | 0.284432 | 3.1:-60596054 | None:intergenic |
| ATATCAGAAGCGGTGTATTA+AGG | 0.323655 | 3.1:+60594831 | MS.gene52352:CDS |
| CAAGAAACAGCAGACAGATA+TGG | 0.338348 | 3.1:+60595942 | MS.gene52352:CDS |
| TCAAAGAAGGAAGATTCATT+AGG | 0.358232 | 3.1:+60596569 | MS.gene52352:CDS |
| GAAATATGTCACCATGCTAT+TGG | 0.365207 | 3.1:+60594761 | MS.gene52352:CDS |
| TTGCAATCTCATTCTCATCT+TGG | 0.370490 | 3.1:+60594788 | MS.gene52352:CDS |
| CATTCTTTCCAGATAAAAGT+TGG | 0.388365 | 3.1:-60596346 | None:intergenic |
| GATGTAAATATGAGATCAAC+TGG | 0.389772 | 3.1:-60595347 | None:intergenic |
| TAAAATGCATACCTTGGTAT+AGG | 0.393283 | 3.1:-60596632 | None:intergenic |
| TACAGCGTTTGGCTCTTTAC+AGG | 0.396467 | 3.1:+60597448 | MS.gene52352:intron |
| ATTCTTTCCAGATAAAAGTT+GGG | 0.399691 | 3.1:-60596345 | None:intergenic |
| TCCTCCCAATGGTGAAAGTC+TGG | 0.399875 | 3.1:+60596007 | MS.gene52352:CDS |
| TTTGTCGAGATACATGATAA+TGG | 0.419771 | 3.1:-60596402 | None:intergenic |
| TGATTTCTTGGAAGTGTCAT+TGG | 0.426824 | 3.1:-60595005 | None:intergenic |
| CCCATAAAACCAACTGAAGC+TGG | 0.429711 | 3.1:+60596601 | MS.gene52352:CDS |
| CAACAACTGACGTCTGTGAA+TGG | 0.445999 | 3.1:-60594952 | None:intergenic |
| AGTTGCCAAGCTGCTATGAC+TGG | 0.450681 | 3.1:-60595777 | None:intergenic |
| ATTAGTTTAGAACTGTCAAC+TGG | 0.450749 | 3.1:+60596526 | MS.gene52352:CDS |
| TTTCAGGTATGGAGAACTAC+AGG | 0.452952 | 3.1:+60595908 | MS.gene52352:intron |
| CTCTCGTTGTGCATAACAAT+AGG | 0.456310 | 3.1:-60595696 | None:intergenic |
| AAGAAACAGCAGACAGATAT+GGG | 0.456650 | 3.1:+60595943 | MS.gene52352:CDS |
| TCATTCTCGCTACCTTCTTA+CGG | 0.461824 | 3.1:-60595421 | None:intergenic |
| CTTACGGCGGTGCTGGGTCA+TGG | 0.466672 | 3.1:-60595405 | None:intergenic |
| TGCAGCAATGGCTTGTCAAA+GGG | 0.476468 | 3.1:+60594875 | MS.gene52352:CDS |
| TACCTTCTTACGGCGGTGCT+GGG | 0.479212 | 3.1:-60595411 | None:intergenic |
| TCTTTGAAAATGTAAAGCAT+TGG | 0.479538 | 3.1:-60596553 | None:intergenic |
| GGCTCTTTACAGGCAGAAGT+TGG | 0.481694 | 3.1:+60597458 | MS.gene52352:CDS |
| AACAACTGACGTCTGTGAAT+GGG | 0.484469 | 3.1:-60594951 | None:intergenic |
| ATTTCCAGACTTTCACCATT+GGG | 0.485719 | 3.1:-60596011 | None:intergenic |
| CATAGCTTCGGCGCCACTCA+TGG | 0.486599 | 3.1:-60595977 | None:intergenic |
| ATAGATGAGGCAATTGAAGC+TGG | 0.487774 | 3.1:+60595305 | MS.gene52352:CDS |
| TTCGACACGGTGAGTCGTTG+TGG | 0.492540 | 3.1:+60595228 | MS.gene52352:CDS |
| CATTTCCAGACTTTCACCAT+TGG | 0.497995 | 3.1:-60596012 | None:intergenic |
| ACAGACGTCAGTTGTTGATC+CGG | 0.498795 | 3.1:+60594958 | MS.gene52352:CDS |
| AAGGGAATAAGTACCCGCTT+TGG | 0.502585 | 3.1:+60594893 | MS.gene52352:CDS |
| AATGAGAAGAATTTGTTCAC+AGG | 0.510239 | 3.1:+60595251 | MS.gene52352:CDS |
| CTGCAGCAATGGCTTGTCAA+AGG | 0.517096 | 3.1:+60594874 | MS.gene52352:CDS |
| TGTATTAAGGTTGGCGACAA+AGG | 0.518818 | 3.1:+60594844 | MS.gene52352:CDS |
| AAGAAGGAAGATTCATTAGG+AGG | 0.521386 | 3.1:+60596572 | MS.gene52352:CDS |
| AAGGAAGATTCATTAGGAGG+GGG | 0.527349 | 3.1:+60596575 | MS.gene52352:CDS |
| GTGCTGGGTCATGGCAAGCA+TGG | 0.530804 | 3.1:-60595396 | None:intergenic |
| GAATTACAATACAATTCCTC+TGG | 0.533183 | 3.1:-60594916 | None:intergenic |
| GAGGAGGTATGTCATAGCTT+CGG | 0.535709 | 3.1:-60595989 | None:intergenic |
| GACCCAGCACCGCCGTAAGA+AGG | 0.536334 | 3.1:+60595409 | MS.gene52352:CDS |
| TACAATTCCTCTGGCCAAAG+CGG | 0.536865 | 3.1:-60594907 | None:intergenic |
| ACAATTCCTCTGGCCAAAGC+GGG | 0.542305 | 3.1:-60594906 | None:intergenic |
| TCTATACCCTTCTTGCTAAG+TGG | 0.548267 | 3.1:-60595287 | None:intergenic |
| AGAAGGAAGATTCATTAGGA+GGG | 0.551932 | 3.1:+60596573 | MS.gene52352:CDS |
| AGACTTTCACCATTGGGAGG+AGG | 0.552095 | 3.1:-60596005 | None:intergenic |
| CAGAAGCGGTGTATTAAGGT+TGG | 0.552496 | 3.1:+60594835 | MS.gene52352:CDS |
| TTCTTTCCAGATAAAAGTTG+GGG | 0.553857 | 3.1:-60596344 | None:intergenic |
| TCTCGACAAATTAACTTCCC+AGG | 0.565688 | 3.1:+60596415 | MS.gene52352:CDS |
| GCATAAACTCCAGCTTCAGT+TGG | 0.565994 | 3.1:-60596610 | None:intergenic |
| GAAGGAAGATTCATTAGGAG+GGG | 0.570970 | 3.1:+60596574 | MS.gene52352:CDS |
| TGATGTACCACTTAGCAAGA+AGG | 0.585970 | 3.1:+60595280 | MS.gene52352:CDS |
| GAATAGCCCAATCACCTCCT+GGG | 0.586449 | 3.1:-60596432 | None:intergenic |
| CCATTCCAGTCATAGCAGCT+TGG | 0.588646 | 3.1:+60595772 | MS.gene52352:CDS |
| CATCACCAAAATATCAGAAG+CGG | 0.592490 | 3.1:+60594821 | MS.gene52352:CDS |
| AGAGTGAACAAGCAAAGGCA+TGG | 0.594259 | 3.1:+60595715 | MS.gene52352:CDS |
| TAAGTACCCGCTTTGGCCAG+AGG | 0.595270 | 3.1:+60594900 | MS.gene52352:CDS |
| GATGTACCACTTAGCAAGAA+GGG | 0.602199 | 3.1:+60595281 | MS.gene52352:CDS |
| TCCAGACTTTCACCATTGGG+AGG | 0.603226 | 3.1:-60596008 | None:intergenic |
| CCAAGCTGCTATGACTGGAA+TGG | 0.606063 | 3.1:-60595772 | None:intergenic |
| CAACGAGAGTGAACAAGCAA+AGG | 0.606715 | 3.1:+60595710 | MS.gene52352:CDS |
| ATGTTATGATTGCCGCACAC+GGG | 0.631044 | 3.1:+60596366 | MS.gene52352:CDS |
| GGAAAGAACAAGTCCATGAG+TGG | 0.633002 | 3.1:+60595964 | MS.gene52352:CDS |
| AATGTTATGATTGCCGCACA+CGG | 0.634751 | 3.1:+60596365 | MS.gene52352:CDS |
| TAGCAAGAAGGGTATAGATG+AGG | 0.640367 | 3.1:+60595292 | MS.gene52352:CDS |
| TCTCAATGAATTCCCGTGTG+CGG | 0.651372 | 3.1:-60596378 | None:intergenic |
| TATGACATACCTCCTCCCAA+TGG | 0.657183 | 3.1:+60595996 | MS.gene52352:CDS |
| TTCAGGTATGGAGAACTACA+GGG | 0.659499 | 3.1:+60595909 | MS.gene52352:intron |
| GCTTTGATCCTTATTCGACA+CGG | 0.660091 | 3.1:+60595215 | MS.gene52352:CDS |
| ATTGCAAAGAGCCAATAGCA+TGG | 0.664561 | 3.1:-60594772 | None:intergenic |
| TTCTCGCTACCTTCTTACGG+CGG | 0.686843 | 3.1:-60595418 | None:intergenic |
| TGGAGTTTATGCCTATACCA+AGG | 0.695146 | 3.1:+60596621 | MS.gene52352:CDS |
| CGACAAATTAACTTCCCAGG+AGG | 0.718042 | 3.1:+60596418 | MS.gene52352:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATTAATATAAATCTTAA+AGG | - | chr3.1:60596963-60596982 | None:intergenic | 10.0% |
| !! | CTAAAAATATCATCTTAAAT+GGG | - | chr3.1:60596678-60596697 | None:intergenic | 15.0% |
| !!! | AGAAAGTTTTGATTTAAAAA+TGG | + | chr3.1:60596705-60596724 | MS.gene52352:intron | 15.0% |
| !! | ATTTATCATACTTGATTTCT+TGG | - | chr3.1:60595020-60595039 | None:intergenic | 20.0% |
| !! | CCTAAAAATATCATCTTAAA+TGG | - | chr3.1:60596679-60596698 | None:intergenic | 20.0% |
| !! | TTAGAGAATATTAGTAAGTA+TGG | + | chr3.1:60595515-60595534 | MS.gene52352:intron | 20.0% |
| !! | TTCATAATTATTATCCTTTC+AGG | + | chr3.1:60595892-60595911 | MS.gene52352:intron | 20.0% |
| !!! | CCATTTAAGATGATATTTTT+AGG | + | chr3.1:60596676-60596695 | MS.gene52352:intron | 20.0% |
| !!! | TATAACAAAGACTAATTTTC+TGG | - | chr3.1:60595610-60595629 | None:intergenic | 20.0% |
| ! | AAATATCATCTTAAATGGGA+CGG | - | chr3.1:60596674-60596693 | None:intergenic | 25.0% |
| ! | AATTCTACCAGAAAGAAAAA+GGG | - | chr3.1:60597080-60597099 | None:intergenic | 25.0% |
| ! | AGGAGAAGTTTCAAAAATTA+AGG | - | chr3.1:60595834-60595853 | None:intergenic | 25.0% |
| ! | AGGTATTACAACTTTCTATT+AGG | - | chr3.1:60597135-60597154 | None:intergenic | 25.0% |
| ! | AGTTGAAATTGTCATATGAT+TGG | + | chr3.1:60595145-60595164 | MS.gene52352:intron | 25.0% |
| ! | ATTAGGACTAGATTTATCTA+AGG | - | chr3.1:60597118-60597137 | None:intergenic | 25.0% |
| ! | ATTCTTTCCAGATAAAAGTT+GGG | - | chr3.1:60596348-60596367 | None:intergenic | 25.0% |
| ! | TTAAGTATCAAGTTTAACCA+GGG | - | chr3.1:60596179-60596198 | None:intergenic | 25.0% |
| ! | TTGAATTTCATTCATGATTG+AGG | + | chr3.1:60596979-60596998 | MS.gene52352:intron | 25.0% |
| !! | AATTATTATCCTTTCAGGTA+TGG | + | chr3.1:60595897-60595916 | MS.gene52352:intron | 25.0% |
| !! | ATGCTTTACATTTTCAAAGA+AGG | + | chr3.1:60596556-60596575 | MS.gene52352:CDS | 25.0% |
| !! | CTCGATCAAAATATTTCTTT+TGG | + | chr3.1:60597170-60597189 | MS.gene52352:intron | 25.0% |
| !! | TCTATGTTTTATATTGCTAG+TGG | - | chr3.1:60596769-60596788 | None:intergenic | 25.0% |
| !! | TCTTTGAAAATGTAAAGCAT+TGG | - | chr3.1:60596556-60596575 | None:intergenic | 25.0% |
| !!! | AACTTGTAAGGTCAATTTTT+TGG | + | chr3.1:60596251-60596270 | MS.gene52352:intron | 25.0% |
| !!! | ATTTTGATCGAGAAAATCAA+CGG | - | chr3.1:60597162-60597181 | None:intergenic | 25.0% |
| !!! | TGATACTTAAGTGTTTTTTG+AGG | + | chr3.1:60596189-60596208 | MS.gene52352:intron | 25.0% |
| AAACACAATTTCCACATACT+TGG | - | chr3.1:60596070-60596089 | None:intergenic | 30.0% | |
| ACTAATAACCTGTCAAAAAG+CGG | - | chr3.1:60596512-60596531 | None:intergenic | 30.0% | |
| ACTTCTTGTAATCAAGTACT+AGG | + | chr3.1:60596901-60596920 | MS.gene52352:intron | 30.0% | |
| CAATTCTACCAGAAAGAAAA+AGG | - | chr3.1:60597081-60597100 | None:intergenic | 30.0% | |
| CATTCTTTCCAGATAAAAGT+TGG | - | chr3.1:60596349-60596368 | None:intergenic | 30.0% | |
| CTTAAGTATCAAGTTTAACC+AGG | - | chr3.1:60596180-60596199 | None:intergenic | 30.0% | |
| GAATTACAATACAATTCCTC+TGG | - | chr3.1:60594919-60594938 | None:intergenic | 30.0% | |
| GATGTAAATATGAGATCAAC+TGG | - | chr3.1:60595350-60595369 | None:intergenic | 30.0% | |
| GCAACCAACAAAAATATACT+CGG | - | chr3.1:60595079-60595098 | None:intergenic | 30.0% | |
| TAAAATGCATACCTTGGTAT+AGG | - | chr3.1:60596635-60596654 | None:intergenic | 30.0% | |
| TAAGCAAACATGTCAAACTA+AGG | - | chr3.1:60597035-60597054 | None:intergenic | 30.0% | |
| TCAAAGAAGGAAGATTCATT+AGG | + | chr3.1:60596569-60596588 | MS.gene52352:CDS | 30.0% | |
| TGGTTAAAGTGATCATCATA+TGG | + | chr3.1:60596276-60596295 | MS.gene52352:intron | 30.0% | |
| TTAAATGGGACGGAATATAA+AGG | - | chr3.1:60596664-60596683 | None:intergenic | 30.0% | |
| TTAAGTTATCCAGACAAATG+TGG | + | chr3.1:60596227-60596246 | MS.gene52352:intron | 30.0% | |
| TTCTTTCCAGATAAAAGTTG+GGG | - | chr3.1:60596347-60596366 | None:intergenic | 30.0% | |
| TTTGTCGAGATACATGATAA+TGG | - | chr3.1:60596405-60596424 | None:intergenic | 30.0% | |
| ! | AATGAGAAGAATTTGTTCAC+AGG | + | chr3.1:60595251-60595270 | MS.gene52352:CDS | 30.0% |
| ! | ATTAGTTTAGAACTGTCAAC+TGG | + | chr3.1:60596526-60596545 | MS.gene52352:CDS | 30.0% |
| ! | TTCTTATCCCTTTTTCTTTC+TGG | + | chr3.1:60597070-60597089 | MS.gene52352:intron | 30.0% |
| ! | TTTTGATCGAGAAAATCAAC+GGG | - | chr3.1:60597161-60597180 | None:intergenic | 30.0% |
| !! | CATAGAACATCAAAAGTGTT+TGG | + | chr3.1:60596783-60596802 | MS.gene52352:intron | 30.0% |
| !!! | GTAAGGTCAATTTTTTGGTA+TGG | + | chr3.1:60596256-60596275 | MS.gene52352:intron | 30.0% |
| AACCAAGTAAAGTCGTTAGT+GGG | - | chr3.1:60597429-60597448 | None:intergenic | 35.0% | |
| AAGAAACAGCAGACAGATAT+GGG | + | chr3.1:60595943-60595962 | MS.gene52352:CDS | 35.0% | |
| AAGAAGGAAGATTCATTAGG+AGG | + | chr3.1:60596572-60596591 | MS.gene52352:CDS | 35.0% | |
| AAGTTTAACCAGGGAAAATG+AGG | - | chr3.1:60596170-60596189 | None:intergenic | 35.0% | |
| AGAAGGAAGATTCATTAGGA+GGG | + | chr3.1:60596573-60596592 | MS.gene52352:CDS | 35.0% | |
| ATATCAGAAGCGGTGTATTA+AGG | + | chr3.1:60594831-60594850 | MS.gene52352:CDS | 35.0% | |
| ATCTGCAACATTGGTATCAA+TGG | - | chr3.1:60596320-60596339 | None:intergenic | 35.0% | |
| ATGGATATTGTTTGTCCAGA+AGG | + | chr3.1:60596724-60596743 | MS.gene52352:intron | 35.0% | |
| ATTTCCAGACTTTCACCATT+GGG | - | chr3.1:60596014-60596033 | None:intergenic | 35.0% | |
| CAATGACTGACACTTATTTG+AGG | - | chr3.1:60597266-60597285 | None:intergenic | 35.0% | |
| CATCACCAAAATATCAGAAG+CGG | + | chr3.1:60594821-60594840 | MS.gene52352:CDS | 35.0% | |
| CTAATAACCTGTCAAAAAGC+GGG | - | chr3.1:60596511-60596530 | None:intergenic | 35.0% | |
| GAAATATGTCACCATGCTAT+TGG | + | chr3.1:60594761-60594780 | MS.gene52352:CDS | 35.0% | |
| TAACCAAGTAAAGTCGTTAG+TGG | - | chr3.1:60597430-60597449 | None:intergenic | 35.0% | |
| TACAAGTTACCACATTTGTC+TGG | - | chr3.1:60596239-60596258 | None:intergenic | 35.0% | |
| TATTTCAGAGACCAAGTATG+TGG | + | chr3.1:60596056-60596075 | MS.gene52352:intron | 35.0% | |
| TCGGTATAAAATGCATACCT+TGG | - | chr3.1:60596641-60596660 | None:intergenic | 35.0% | |
| TGCATTTGTCTGGATAACTT+AGG | + | chr3.1:60596129-60596148 | MS.gene52352:intron | 35.0% | |
| TTGCAATCTCATTCTCATCT+TGG | + | chr3.1:60594788-60594807 | MS.gene52352:CDS | 35.0% | |
| ! | AAGGATTTTATCTGCAGCAA+TGG | + | chr3.1:60594863-60594882 | MS.gene52352:CDS | 35.0% |
| ! | ATACACCGCTTCTGATATTT+TGG | - | chr3.1:60594829-60594848 | None:intergenic | 35.0% |
| ! | ATTGAACCCCAACTTTTATC+TGG | + | chr3.1:60596338-60596357 | MS.gene52352:CDS | 35.0% |
| ! | GACAAATGTGGTAACTTGTA+AGG | + | chr3.1:60596239-60596258 | MS.gene52352:intron | 35.0% |
| ! | TGCAGAGTTGTGAATTTTTG+AGG | + | chr3.1:60596103-60596122 | MS.gene52352:intron | 35.0% |
| ! | TTCTTTCTGGTAGAATTGCA+AGG | + | chr3.1:60597083-60597102 | MS.gene52352:intron | 35.0% |
| !! | ACATACTTGGTCTCTGAAAT+AGG | - | chr3.1:60596057-60596076 | None:intergenic | 35.0% |
| !! | TGATTTCTTGGAAGTGTCAT+TGG | - | chr3.1:60595008-60595027 | None:intergenic | 35.0% |
| !! | TGGCTTTCTAAGATGTTAGT+TGG | + | chr3.1:60597190-60597209 | MS.gene52352:intron | 35.0% |
| !! | TGTGCCGAGTATATTTTTGT+TGG | + | chr3.1:60595072-60595091 | MS.gene52352:intron | 35.0% |
| !!! | ATTGGTGTTGCTTTTTGAAG+GGG | - | chr3.1:60594990-60595009 | None:intergenic | 35.0% |
| !!! | CATTGGTGTTGCTTTTTGAA+GGG | - | chr3.1:60594991-60595010 | None:intergenic | 35.0% |
| !!! | TCATTGGTGTTGCTTTTTGA+AGG | - | chr3.1:60594992-60595011 | None:intergenic | 35.0% |
| AACAACTGACGTCTGTGAAT+GGG | - | chr3.1:60594954-60594973 | None:intergenic | 40.0% | |
| AAGGAAGATTCATTAGGAGG+GGG | + | chr3.1:60596575-60596594 | MS.gene52352:CDS | 40.0% | |
| AAGTTGGATCATCGAGTGTT+AGG | + | chr3.1:60595105-60595124 | MS.gene52352:intron | 40.0% | |
| AATGTTATGATTGCCGCACA+CGG | + | chr3.1:60596365-60596384 | MS.gene52352:CDS | 40.0% | |
| ATAGATGAGGCAATTGAAGC+TGG | + | chr3.1:60595305-60595324 | MS.gene52352:CDS | 40.0% | |
| ATGGGACGGAATATAAAGGT+CGG | - | chr3.1:60596660-60596679 | None:intergenic | 40.0% | |
| ATTGCAAAGAGCCAATAGCA+TGG | - | chr3.1:60594775-60594794 | None:intergenic | 40.0% | |
| CAAGAAACAGCAGACAGATA+TGG | + | chr3.1:60595942-60595961 | MS.gene52352:CDS | 40.0% | |
| CATTTCCAGACTTTCACCAT+TGG | - | chr3.1:60596015-60596034 | None:intergenic | 40.0% | |
| CTCTCGTTGTGCATAACAAT+AGG | - | chr3.1:60595699-60595718 | None:intergenic | 40.0% | |
| CTTTACTTGGTTACAGCGTT+TGG | + | chr3.1:60597437-60597456 | MS.gene52352:intron | 40.0% | |
| GAAGGAAGATTCATTAGGAG+GGG | + | chr3.1:60596574-60596593 | MS.gene52352:CDS | 40.0% | |
| GATGTACCACTTAGCAAGAA+GGG | + | chr3.1:60595281-60595300 | MS.gene52352:CDS | 40.0% | |
| GCTTTGATCCTTATTCGACA+CGG | + | chr3.1:60595215-60595234 | MS.gene52352:CDS | 40.0% | |
| GTCTAGATCGTATGTTGGAA+AGG | + | chr3.1:60596937-60596956 | MS.gene52352:intron | 40.0% | |
| TAAGTGTCAGTCATTGACGT+CGG | + | chr3.1:60597270-60597289 | MS.gene52352:intron | 40.0% | |
| TCATTCTCGCTACCTTCTTA+CGG | - | chr3.1:60595424-60595443 | None:intergenic | 40.0% | |
| TCTATACCCTTCTTGCTAAG+TGG | - | chr3.1:60595290-60595309 | None:intergenic | 40.0% | |
| TCTCGACAAATTAACTTCCC+AGG | + | chr3.1:60596415-60596434 | MS.gene52352:CDS | 40.0% | |
| TGAGAGTCTAGATCGTATGT+TGG | + | chr3.1:60596932-60596951 | MS.gene52352:intron | 40.0% | |
| TGATGTACCACTTAGCAAGA+AGG | + | chr3.1:60595280-60595299 | MS.gene52352:CDS | 40.0% | |
| TGGAGTTTATGCCTATACCA+AGG | + | chr3.1:60596621-60596640 | MS.gene52352:CDS | 40.0% | |
| TGTAGTTCTCCATACCTGAA+AGG | - | chr3.1:60595909-60595928 | None:intergenic | 40.0% | |
| TGTATTAAGGTTGGCGACAA+AGG | + | chr3.1:60594844-60594863 | MS.gene52352:CDS | 40.0% | |
| TTCAGGTATGGAGAACTACA+GGG | + | chr3.1:60595909-60595928 | MS.gene52352:intron | 40.0% | |
| ! | TAGCAAGAAGGGTATAGATG+AGG | + | chr3.1:60595292-60595311 | MS.gene52352:CDS | 40.0% |
| ! | TGTTGGTTGCTTCTTGAAGT+TGG | + | chr3.1:60595089-60595108 | MS.gene52352:intron | 40.0% |
| ! | TTTCAGGTATGGAGAACTAC+AGG | + | chr3.1:60595908-60595927 | MS.gene52352:intron | 40.0% |
| ! | TTTGAGGTTGTGCATTTGTC+TGG | + | chr3.1:60596119-60596138 | MS.gene52352:intron | 40.0% |
| !! | CTGATGCTCTAAAATGATGC+TGG | + | chr3.1:60597350-60597369 | MS.gene52352:intron | 40.0% |
| !! | TTAACCATTAACTTGCCTGC+AGG | + | chr3.1:60595671-60595690 | MS.gene52352:intron | 40.0% |
| !!! | AACTTTTCCCGCTTTTTGAC+AGG | + | chr3.1:60596501-60596520 | MS.gene52352:intron | 40.0% |
| !!! | CCAGCTTCAGTTGGTTTTAT+GGG | - | chr3.1:60596604-60596623 | None:intergenic | 40.0% |
| !!! | TCCAGCTTCAGTTGGTTTTA+TGG | - | chr3.1:60596605-60596624 | None:intergenic | 40.0% |
| AAGGGAATAAGTACCCGCTT+TGG | + | chr3.1:60594893-60594912 | MS.gene52352:CDS | 45.0% | |
| ACAGACGTCAGTTGTTGATC+CGG | + | chr3.1:60594958-60594977 | MS.gene52352:CDS | 45.0% | |
| AGAGTGAACAAGCAAAGGCA+TGG | + | chr3.1:60595715-60595734 | MS.gene52352:CDS | 45.0% | |
| ATGTTATGATTGCCGCACAC+GGG | + | chr3.1:60596366-60596385 | MS.gene52352:CDS | 45.0% | |
| CAAAGCTGCTTCATCTGAGT+TGG | - | chr3.1:60595201-60595220 | None:intergenic | 45.0% | |
| CAACAACTGACGTCTGTGAA+TGG | - | chr3.1:60594955-60594974 | None:intergenic | 45.0% | |
| CAACGAGAGTGAACAAGCAA+AGG | + | chr3.1:60595710-60595729 | MS.gene52352:CDS | 45.0% | |
| CAGAAGCGGTGTATTAAGGT+TGG | + | chr3.1:60594835-60594854 | MS.gene52352:CDS | 45.0% | |
| CCCATAAAACCAACTGAAGC+TGG | + | chr3.1:60596601-60596620 | MS.gene52352:CDS | 45.0% | |
| CGACAAATTAACTTCCCAGG+AGG | + | chr3.1:60596418-60596437 | MS.gene52352:CDS | 45.0% | |
| GCATAAACTCCAGCTTCAGT+TGG | - | chr3.1:60596613-60596632 | None:intergenic | 45.0% | |
| GGAAAGAACAAGTCCATGAG+TGG | + | chr3.1:60595964-60595983 | MS.gene52352:CDS | 45.0% | |
| TAACTTCCCAGGAGGTGATT+GGG | + | chr3.1:60596426-60596445 | MS.gene52352:intron | 45.0% | |
| TACAATTCCTCTGGCCAAAG+CGG | - | chr3.1:60594910-60594929 | None:intergenic | 45.0% | |
| TATGACATACCTCCTCCCAA+TGG | + | chr3.1:60595996-60596015 | MS.gene52352:CDS | 45.0% | |
| TCGAGAAAATCAACGGGTCA+AGG | - | chr3.1:60597155-60597174 | None:intergenic | 45.0% | |
| TCTCAATGAATTCCCGTGTG+CGG | - | chr3.1:60596381-60596400 | None:intergenic | 45.0% | |
| TGCCCACTAACGACTTTACT+TGG | + | chr3.1:60597424-60597443 | MS.gene52352:intron | 45.0% | |
| TGCTATTCAGCGCGTTGTAA+AGG | - | chr3.1:60595854-60595873 | None:intergenic | 45.0% | |
| TGGATCATCGAGTGTTAGGT+TGG | + | chr3.1:60595109-60595128 | MS.gene52352:intron | 45.0% | |
| TGGGGTTCAATCTGCAACAT+TGG | - | chr3.1:60596329-60596348 | None:intergenic | 45.0% | |
| TTAACTTCCCAGGAGGTGAT+TGG | + | chr3.1:60596425-60596444 | MS.gene52352:intron | 45.0% | |
| TTACAACGCGCTGAATAGCA+CGG | + | chr3.1:60595854-60595873 | MS.gene52352:intron | 45.0% | |
| ! | CTTCGTGTCGCTATGTGATA+TGG | + | chr3.1:60596822-60596841 | MS.gene52352:intron | 45.0% |
| ! | GAGGAGGTATGTCATAGCTT+CGG | - | chr3.1:60595992-60596011 | None:intergenic | 45.0% |
| ! | TGCAGCAATGGCTTGTCAAA+GGG | + | chr3.1:60594875-60594894 | MS.gene52352:CDS | 45.0% |
| ! | TTGTTCTGCCTCATTTTCCC+TGG | + | chr3.1:60596159-60596178 | MS.gene52352:intron | 45.0% |
| !! | CTTTTTGAAGGGGACAACAC+CGG | - | chr3.1:60594980-60594999 | None:intergenic | 45.0% |
| !! | TACAGCGTTTGGCTCTTTAC+AGG | + | chr3.1:60597448-60597467 | MS.gene52352:intron | 45.0% |
| ACAATTCCTCTGGCCAAAGC+GGG | - | chr3.1:60594909-60594928 | None:intergenic | 50.0% | |
| ACGACTCACCGTGTCGAATA+AGG | - | chr3.1:60595226-60595245 | None:intergenic | 50.0% | |
| AGACTTTCACCATTGGGAGG+AGG | - | chr3.1:60596008-60596027 | None:intergenic | 50.0% | |
| AGTTGCCAAGCTGCTATGAC+TGG | - | chr3.1:60595780-60595799 | None:intergenic | 50.0% | |
| CCAAGCTGCTATGACTGGAA+TGG | - | chr3.1:60595775-60595794 | None:intergenic | 50.0% | |
| CCATTCCAGTCATAGCAGCT+TGG | + | chr3.1:60595772-60595791 | MS.gene52352:CDS | 50.0% | |
| GAATAGCCCAATCACCTCCT+GGG | - | chr3.1:60596435-60596454 | None:intergenic | 50.0% | |
| GCATAACAATAGGCACCTGC+AGG | - | chr3.1:60595689-60595708 | None:intergenic | 50.0% | |
| GGCTCTTTACAGGCAGAAGT+TGG | + | chr3.1:60597458-60597477 | MS.gene52352:CDS | 50.0% | |
| GTTTGTCCAGAAGGTTGCAG+TGG | + | chr3.1:60596733-60596752 | MS.gene52352:intron | 50.0% | |
| TCCAGACTTTCACCATTGGG+AGG | - | chr3.1:60596011-60596030 | None:intergenic | 50.0% | |
| TCCTCCCAATGGTGAAAGTC+TGG | + | chr3.1:60596007-60596026 | MS.gene52352:CDS | 50.0% | |
| TGAATAGCCCAATCACCTCC+TGG | - | chr3.1:60596436-60596455 | None:intergenic | 50.0% | |
| TTCTCGCTACCTTCTTACGG+CGG | - | chr3.1:60595421-60595440 | None:intergenic | 50.0% | |
| ! | CTGCAGCAATGGCTTGTCAA+AGG | + | chr3.1:60594874-60594893 | MS.gene52352:CDS | 50.0% |
| GGCACCTGCAGGCAAGTTAA+TGG | - | chr3.1:60595678-60595697 | None:intergenic | 55.0% | |
| TAAGTACCCGCTTTGGCCAG+AGG | + | chr3.1:60594900-60594919 | MS.gene52352:CDS | 55.0% | |
| TACCTTCTTACGGCGGTGCT+GGG | - | chr3.1:60595414-60595433 | None:intergenic | 55.0% | |
| TTCGACACGGTGAGTCGTTG+TGG | + | chr3.1:60595228-60595247 | MS.gene52352:CDS | 55.0% | |
| ! | CAAGTGCCACTGCAACCTTC+TGG | - | chr3.1:60596742-60596761 | None:intergenic | 55.0% |
| CATAGCTTCGGCGCCACTCA+TGG | - | chr3.1:60595980-60595999 | None:intergenic | 60.0% | |
| CTACCTTCTTACGGCGGTGC+TGG | - | chr3.1:60595415-60595434 | None:intergenic | 60.0% | |
| GTGCTGGGTCATGGCAAGCA+TGG | - | chr3.1:60595399-60595418 | None:intergenic | 60.0% | |
| GACCCAGCACCGCCGTAAGA+AGG | + | chr3.1:60595409-60595428 | MS.gene52352:CDS | 65.0% | |
| ! | CTTACGGCGGTGCTGGGTCA+TGG | - | chr3.1:60595408-60595427 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 60594752 | 60597494 | 60594752 | ID=MS.gene52352 |
| chr3.1 | mRNA | 60594752 | 60597494 | 60594752 | ID=MS.gene52352.t1;Parent=MS.gene52352 |
| chr3.1 | exon | 60594752 | 60595028 | 60594752 | ID=MS.gene52352.t1.exon1;Parent=MS.gene52352.t1 |
| chr3.1 | CDS | 60594752 | 60595028 | 60594752 | ID=cds.MS.gene52352.t1;Parent=MS.gene52352.t1 |
| chr3.1 | exon | 60595207 | 60595430 | 60595207 | ID=MS.gene52352.t1.exon2;Parent=MS.gene52352.t1 |
| chr3.1 | CDS | 60595207 | 60595430 | 60595207 | ID=cds.MS.gene52352.t1;Parent=MS.gene52352.t1 |
| chr3.1 | exon | 60595693 | 60595811 | 60595693 | ID=MS.gene52352.t1.exon3;Parent=MS.gene52352.t1 |
| chr3.1 | CDS | 60595693 | 60595811 | 60595693 | ID=cds.MS.gene52352.t1;Parent=MS.gene52352.t1 |
| chr3.1 | exon | 60595914 | 60596070 | 60595914 | ID=MS.gene52352.t1.exon4;Parent=MS.gene52352.t1 |
| chr3.1 | CDS | 60595914 | 60596070 | 60595914 | ID=cds.MS.gene52352.t1;Parent=MS.gene52352.t1 |
| chr3.1 | exon | 60596338 | 60596439 | 60596338 | ID=MS.gene52352.t1.exon5;Parent=MS.gene52352.t1 |
| chr3.1 | CDS | 60596338 | 60596439 | 60596338 | ID=cds.MS.gene52352.t1;Parent=MS.gene52352.t1 |
| chr3.1 | exon | 60596523 | 60596642 | 60596523 | ID=MS.gene52352.t1.exon6;Parent=MS.gene52352.t1 |
| chr3.1 | CDS | 60596523 | 60596642 | 60596523 | ID=cds.MS.gene52352.t1;Parent=MS.gene52352.t1 |
| chr3.1 | exon | 60597453 | 60597494 | 60597453 | ID=MS.gene52352.t1.exon7;Parent=MS.gene52352.t1 |
| chr3.1 | CDS | 60597453 | 60597494 | 60597453 | ID=cds.MS.gene52352.t1;Parent=MS.gene52352.t1 |
| Gene Sequence |
| Protein sequence |
