Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53009.t1 | XP_013468706.1 | 96.1 | 664 | 26 | 0 | 1 | 664 | 1 | 664 | 0.00E+00 | 1293.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53009.t1 | Q9SS87 | 28.7 | 703 | 431 | 21 | 22 | 663 | 36 | 729 | 7.2e-76 | 286.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53009.t1 | A0A072VMS7 | 96.1 | 664 | 26 | 0 | 1 | 664 | 1 | 664 | 0.0e+00 | 1293.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052698 | MS.gene53009 | 0.824799 | 6.64E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53009.t1 | MTR_1g075095 | 96.084 | 664 | 26 | 0 | 1 | 664 | 1 | 664 | 0.0 | 1320 |
| MS.gene53009.t1 | MTR_1g075030 | 94.729 | 664 | 35 | 0 | 1 | 664 | 1 | 664 | 0.0 | 1303 |
| MS.gene53009.t1 | MTR_1g074990 | 85.994 | 664 | 91 | 1 | 1 | 664 | 1 | 662 | 0.0 | 1185 |
| MS.gene53009.t1 | MTR_1g075230 | 73.534 | 665 | 172 | 2 | 1 | 663 | 1 | 663 | 0.0 | 979 |
| MS.gene53009.t1 | MTR_1g074950 | 58.308 | 662 | 266 | 7 | 5 | 663 | 9 | 663 | 0.0 | 780 |
| MS.gene53009.t1 | MTR_1g040360 | 35.347 | 662 | 402 | 11 | 20 | 663 | 25 | 678 | 1.44e-139 | 424 |
| MS.gene53009.t1 | MTR_7g032660 | 32.040 | 696 | 408 | 19 | 24 | 663 | 25 | 711 | 2.20e-103 | 331 |
| MS.gene53009.t1 | MTR_1g075180 | 31.784 | 667 | 389 | 16 | 20 | 662 | 11 | 635 | 1.30e-100 | 321 |
| MS.gene53009.t1 | MTR_3g075450 | 30.970 | 691 | 412 | 19 | 23 | 661 | 27 | 704 | 7.75e-97 | 313 |
| MS.gene53009.t1 | MTR_8g089660 | 31.079 | 695 | 417 | 24 | 22 | 662 | 17 | 703 | 5.46e-94 | 305 |
| MS.gene53009.t1 | MTR_1g075170 | 30.299 | 670 | 406 | 18 | 20 | 662 | 31 | 666 | 8.41e-94 | 304 |
| MS.gene53009.t1 | MTR_1g075153 | 29.685 | 667 | 407 | 14 | 20 | 662 | 34 | 662 | 3.87e-88 | 289 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53009.t1 | AT3G01680 | 29.202 | 702 | 424 | 23 | 25 | 663 | 38 | 729 | 1.23e-88 | 292 |
| MS.gene53009.t1 | AT3G01670 | 26.891 | 595 | 375 | 13 | 116 | 661 | 261 | 844 | 9.85e-57 | 207 |
| MS.gene53009.t1 | AT3G01670 | 26.891 | 595 | 375 | 13 | 116 | 661 | 237 | 820 | 1.77e-56 | 206 |
| MS.gene53009.t1 | AT1G67790 | 23.770 | 610 | 393 | 19 | 98 | 659 | 79 | 664 | 2.53e-39 | 154 |
Find 133 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAATTATGGAAGTGTTTA+AGG | 0.151408 | 1.1:+56162598 | MS.gene53009:CDS |
| CATTGATTCTTCTTTGGTTT+TGG | 0.159114 | 1.1:-56163183 | None:intergenic |
| AAAACACCGCTATGCAATTT+TGG | 0.175126 | 1.1:+56162025 | MS.gene53009:CDS |
| TCAAACCCCGACTGAAATTA+TGG | 0.226152 | 1.1:+56162586 | MS.gene53009:CDS |
| AAAATGTGGTTAACACCTTT+TGG | 0.226558 | 1.1:+56163779 | MS.gene53009:CDS |
| TTGGGTCATTGATTCTTCTT+TGG | 0.230123 | 1.1:-56163189 | None:intergenic |
| CAACAATTCACCAAGTATTA+TGG | 0.234260 | 1.1:+56163682 | MS.gene53009:CDS |
| CATCACTTTGCAACCATAAA+AGG | 0.238124 | 1.1:+56163026 | MS.gene53009:CDS |
| AATTCCCAGTTGATGTATAT+TGG | 0.255879 | 1.1:+56162165 | MS.gene53009:CDS |
| GGAGGTTAACAATCTGATTA+AGG | 0.259837 | 1.1:+56162046 | MS.gene53009:CDS |
| CTTGAGATTCCTAATGTTGA+TGG | 0.279806 | 1.1:+56164075 | MS.gene53009:CDS |
| ATTTCATATGATTCATGTTT+GGG | 0.287513 | 1.1:+56163139 | MS.gene53009:CDS |
| TGCTCATCAGACATGGTTAA+AGG | 0.291226 | 1.1:-56159605 | None:intergenic |
| CTGCCTAATGCTAACCATTA+TGG | 0.297378 | 1.1:-56164170 | None:intergenic |
| CTTCATTATGGCCAAAGATT+TGG | 0.304556 | 1.1:-56161967 | None:intergenic |
| CTCTTGAATATGGTGAGTTC+TGG | 0.316509 | 1.1:+56161910 | MS.gene53009:CDS |
| AGGCAGGACTTATCTCAATT+TGG | 0.322196 | 1.1:+56162377 | MS.gene53009:CDS |
| AGAACCACTTGCCAAATCTT+TGG | 0.322840 | 1.1:+56161956 | MS.gene53009:CDS |
| GCCAGCTCTTGCACCAGCTT+TGG | 0.325831 | 1.1:+56162139 | MS.gene53009:CDS |
| ATTCCCAGTTGATGTATATT+GGG | 0.325968 | 1.1:+56162166 | MS.gene53009:CDS |
| TTGAGGCACTCGCTTCATTA+TGG | 0.326662 | 1.1:-56161979 | None:intergenic |
| CATTTCATATGATTCATGTT+TGG | 0.344991 | 1.1:+56163138 | MS.gene53009:CDS |
| CATGTCTGATGAGCACATTT+TGG | 0.345477 | 1.1:+56159613 | MS.gene53009:CDS |
| AATCAACCCACATTAGTTCT+TGG | 0.350415 | 1.1:-56163208 | None:intergenic |
| ATTCATGTTTGGGGAGTAAA+GGG | 0.351683 | 1.1:+56163149 | MS.gene53009:CDS |
| ACAAGTTGTCAAACTATTCA+TGG | 0.354895 | 1.1:+56161853 | MS.gene53009:CDS |
| AATAGTGGCATCATTTACTA+TGG | 0.358093 | 1.1:-56163707 | None:intergenic |
| ATAACCCAATATACATCAAC+TGG | 0.359855 | 1.1:-56162170 | None:intergenic |
| TTTAGTGGAACCACAATAGA+TGG | 0.364875 | 1.1:-56162654 | None:intergenic |
| TCATAGTTGAGATGTCTTCT+TGG | 0.373232 | 1.1:-56162869 | None:intergenic |
| TCCATTGTGCGGTGACAATC+TGG | 0.382744 | 1.1:-56164123 | None:intergenic |
| TACTATGGCGCCATAATACT+TGG | 0.395719 | 1.1:-56163692 | None:intergenic |
| GCATTTCAAGCTGAATCCTT+TGG | 0.400511 | 1.1:+56163073 | MS.gene53009:CDS |
| TTCAATTGAGTTGATTTGCT+TGG | 0.402147 | 1.1:+56163744 | MS.gene53009:CDS |
| TCAAGCAAGTGTGGAGCAAT+TGG | 0.404063 | 1.1:+56159857 | MS.gene53009:CDS |
| TCTGGACACTCAATAAAGTC+TGG | 0.413591 | 1.1:-56164105 | None:intergenic |
| CAGACATGGTTAAAGGGTTA+TGG | 0.416704 | 1.1:-56159598 | None:intergenic |
| GTGGAGGAATGGAATGATAA+GGG | 0.417645 | 1.1:+56162954 | MS.gene53009:CDS |
| AGCTACAGGTGCTGCCATAA+TGG | 0.418677 | 1.1:+56164156 | MS.gene53009:CDS |
| CATCAAACTTAGTGTCACTA+TGG | 0.419012 | 1.1:-56159658 | None:intergenic |
| AGCAATCACAATAGAACCTT+TGG | 0.422723 | 1.1:-56163914 | None:intergenic |
| TATGATCATATCCAGAAAAC+AGG | 0.424006 | 1.1:+56162900 | MS.gene53009:CDS |
| CCATGGCATCTTAGACTTCA+AGG | 0.428095 | 1.1:-56162994 | None:intergenic |
| CCACAATAGATGGGTGTTTG+TGG | 0.437219 | 1.1:-56162644 | None:intergenic |
| ATCAACCCACATTAGTTCTT+GGG | 0.438934 | 1.1:-56163207 | None:intergenic |
| GATTCATGTTTGGGGAGTAA+AGG | 0.439109 | 1.1:+56163148 | MS.gene53009:CDS |
| TTGTATGCAATTTCCTCACC+TGG | 0.440380 | 1.1:-56161810 | None:intergenic |
| AGTCTTTGTCTGCTTAATAG+TGG | 0.440642 | 1.1:-56163722 | None:intergenic |
| TCATTCCATTCCTCCACAAT+GGG | 0.453843 | 1.1:-56162948 | None:intergenic |
| CAACATGGGTTGAACGTGTA+AGG | 0.459385 | 1.1:-56159712 | None:intergenic |
| ACACTTCCATAATTTCAGTC+GGG | 0.466104 | 1.1:-56162592 | None:intergenic |
| TCCAAAGCTGGTGCAAGAGC+TGG | 0.469770 | 1.1:-56162140 | None:intergenic |
| ATTGTGATTGCTGTTGGTCA+TGG | 0.472155 | 1.1:+56163925 | MS.gene53009:CDS |
| AACTATTCATGGGTTGCAAA+AGG | 0.472460 | 1.1:+56161864 | MS.gene53009:CDS |
| GTTCTTGTTCATTTCAACCT+TGG | 0.474812 | 1.1:+56162839 | MS.gene53009:CDS |
| TTGCAACCATAAAAGGCATC+AGG | 0.479822 | 1.1:+56163033 | MS.gene53009:CDS |
| TTGTGATTGCTGTTGGTCAT+GGG | 0.479882 | 1.1:+56163926 | MS.gene53009:CDS |
| TGTGGAGGAATGGAATGATA+AGG | 0.480677 | 1.1:+56162953 | MS.gene53009:CDS |
| AGCGGTGAAGTGAAGTTAGC+AGG | 0.483068 | 1.1:-56159894 | None:intergenic |
| GCTCATCAGACATGGTTAAA+GGG | 0.484807 | 1.1:-56159604 | None:intergenic |
| CATTTGCAGAGTTTGACAAA+TGG | 0.486055 | 1.1:+56163965 | MS.gene53009:CDS |
| GATGACACTGTCATCATTTG+TGG | 0.486509 | 1.1:+56163637 | MS.gene53009:CDS |
| TGTTTCCAGCAATGTTGAAA+AGG | 0.490292 | 1.1:-56159688 | None:intergenic |
| GCATTGATATAAAGATTAAG+TGG | 0.490685 | 1.1:+56163243 | MS.gene53009:CDS |
| GATTGATATCATCATTGAGT+TGG | 0.493959 | 1.1:+56162082 | MS.gene53009:CDS |
| CAGATGGCATGCAAGGCTCC+AGG | 0.494131 | 1.1:+56161792 | MS.gene53009:intron |
| ACTGGGAATTGCTCCAAAGC+TGG | 0.505702 | 1.1:-56162152 | None:intergenic |
| AACACTTCCATAATTTCAGT+CGG | 0.506807 | 1.1:-56162593 | None:intergenic |
| TGGAAGTGTTTATCAGCTAC+AGG | 0.511091 | 1.1:+56164142 | MS.gene53009:CDS |
| CTGAGTAACAATTGCAACAA+TGG | 0.516089 | 1.1:-56162198 | None:intergenic |
| AAATGAGTATTCAAAGCCCT+TGG | 0.526373 | 1.1:-56164004 | None:intergenic |
| TTGTGGTTCCACTAAAACAC+TGG | 0.527106 | 1.1:+56162661 | MS.gene53009:CDS |
| GGTTCTATTGTGATTGCTGT+TGG | 0.527999 | 1.1:+56163919 | MS.gene53009:CDS |
| CAATGACCCAAGAACTAATG+TGG | 0.529258 | 1.1:+56163201 | MS.gene53009:CDS |
| AGGCATCAGGTTCATAAAAG+AGG | 0.531058 | 1.1:+56163046 | MS.gene53009:CDS |
| TCACAAATCACTATACAGAT+TGG | 0.534352 | 1.1:+56162443 | MS.gene53009:CDS |
| ATCATTCCATTCCTCCACAA+TGG | 0.536453 | 1.1:-56162949 | None:intergenic |
| CAAGTTGTCAAACTATTCAT+GGG | 0.542393 | 1.1:+56161854 | MS.gene53009:CDS |
| GTGGAGGTAAAGATAAGGAA+TGG | 0.549099 | 1.1:+56163656 | MS.gene53009:CDS |
| CTGGACACTCAATAAAGTCT+GGG | 0.551291 | 1.1:-56164104 | None:intergenic |
| GCGGTGAAGTGAAGTTAGCA+GGG | 0.555690 | 1.1:-56159893 | None:intergenic |
| GATTCAGGTTTGGTGAGTTG+AGG | 0.558486 | 1.1:-56161996 | None:intergenic |
| ACATCATAATCAGCAAATTG+AGG | 0.559555 | 1.1:+56162411 | MS.gene53009:CDS |
| GATTTGGCAAGTGGTTCTGT+TGG | 0.559865 | 1.1:-56161951 | None:intergenic |
| GGGTTCCCATTGTGGAGGAA+TGG | 0.565612 | 1.1:+56162943 | MS.gene53009:CDS |
| CAACTCACGTCACGACATCA+AGG | 0.567567 | 1.1:+56162112 | MS.gene53009:CDS |
| CATTGATATAAAGATTAAGT+GGG | 0.567772 | 1.1:+56163244 | MS.gene53009:CDS |
| AAAGATGTGGTGAGCACCAA+GGG | 0.568763 | 1.1:+56163988 | MS.gene53009:CDS |
| TTTGAAGAAAATCAATTCTG+AGG | 0.569533 | 1.1:+56159923 | MS.gene53009:CDS |
| GTCTTCTTGGCAGATGTCCA+AGG | 0.571060 | 1.1:-56162856 | None:intergenic |
| CATCAACATTAGGAATCTCA+AGG | 0.576608 | 1.1:-56164074 | None:intergenic |
| CAAAATGTGCTCATCAGACA+TGG | 0.576873 | 1.1:-56159612 | None:intergenic |
| ATGGCCAAAGATTTGGCAAG+TGG | 0.577101 | 1.1:-56161960 | None:intergenic |
| CACTTCCATAATTTCAGTCG+GGG | 0.578548 | 1.1:-56162591 | None:intergenic |
| TGTGAATAAGTGATCGCACT+AGG | 0.578637 | 1.1:-56159553 | None:intergenic |
| GAACCCACACAATCTTGTGT+TGG | 0.580807 | 1.1:-56162926 | None:intergenic |
| CATTTGTGGAGGTAAAGATA+AGG | 0.582924 | 1.1:+56163651 | MS.gene53009:CDS |
| CCTTGAAGTCTAAGATGCCA+TGG | 0.584604 | 1.1:+56162994 | MS.gene53009:CDS |
| GATTGTGTGGGTTCCCATTG+TGG | 0.593856 | 1.1:+56162935 | MS.gene53009:CDS |
| CACAAAGTTATCAACAACAT+GGG | 0.594338 | 1.1:-56159726 | None:intergenic |
| CCACAAACACCCATCTATTG+TGG | 0.594377 | 1.1:+56162644 | MS.gene53009:CDS |
| GAAGCCAACACAAGATTGTG+TGG | 0.596089 | 1.1:+56162922 | MS.gene53009:CDS |
| AATGTGGGTTGATTCCGTGC+TGG | 0.599556 | 1.1:+56163217 | MS.gene53009:CDS |
| GCACAAAGTTATCAACAACA+TGG | 0.600378 | 1.1:-56159727 | None:intergenic |
| TTAGTGGAACCACAATAGAT+GGG | 0.601002 | 1.1:-56162653 | None:intergenic |
| TGGGTTGATTCCGTGCTGGT+TGG | 0.605127 | 1.1:+56163221 | MS.gene53009:CDS |
| GTGCGATCACTTATTCACAT+TGG | 0.606075 | 1.1:+56159557 | MS.gene53009:CDS |
| GGAGTCTCAACAACAAAATG+TGG | 0.614411 | 1.1:+56163765 | MS.gene53009:CDS |
| TATATCAATGCCAACCAGCA+CGG | 0.619216 | 1.1:-56163231 | None:intergenic |
| GGGTGGGCAATTGTAACCAA+AGG | 0.622664 | 1.1:+56163898 | MS.gene53009:CDS |
| TTTCATATGATTCATGTTTG+GGG | 0.624357 | 1.1:+56163140 | MS.gene53009:CDS |
| AATGACCCAAGAACTAATGT+GGG | 0.624567 | 1.1:+56163202 | MS.gene53009:CDS |
| ACATGAATATCAAGCAAGTG+TGG | 0.629780 | 1.1:+56159848 | MS.gene53009:CDS |
| GGCATGCAAGGCTCCAGGTG+AGG | 0.630978 | 1.1:+56161797 | MS.gene53009:CDS |
| AGGAATGGAATGATAAGGGG+AGG | 0.635212 | 1.1:+56162958 | MS.gene53009:CDS |
| ATGGTGGCAGATGGCATGCA+AGG | 0.637627 | 1.1:+56161785 | MS.gene53009:intron |
| TGGAGGAATGGAATGATAAG+GGG | 0.637916 | 1.1:+56162955 | MS.gene53009:CDS |
| ACAATCTGATTAAGGCAACA+TGG | 0.639246 | 1.1:+56162054 | MS.gene53009:CDS |
| TCCAGATTGTCACCGCACAA+TGG | 0.640478 | 1.1:+56164122 | MS.gene53009:CDS |
| GAAAGATGTGGTGAGCACCA+AGG | 0.642800 | 1.1:+56163987 | MS.gene53009:CDS |
| GACACTGTCATCATTTGTGG+AGG | 0.653594 | 1.1:+56163640 | MS.gene53009:CDS |
| AAGTGATGCAACACATACCA+TGG | 0.654990 | 1.1:-56163011 | None:intergenic |
| CGGTGAAGTGAAGTTAGCAG+GGG | 0.658379 | 1.1:-56159892 | None:intergenic |
| GTTGTTGTGTTGAGTACACA+AGG | 0.659541 | 1.1:+56163095 | MS.gene53009:CDS |
| TAACCCAATATACATCAACT+GGG | 0.665391 | 1.1:-56162169 | None:intergenic |
| GTACTCAACACAACAACCAA+AGG | 0.668954 | 1.1:-56163089 | None:intergenic |
| AAGCCAACACAAGATTGTGT+GGG | 0.674200 | 1.1:+56162923 | MS.gene53009:CDS |
| AAACTTACGAATCAGAAGTG+AGG | 0.677375 | 1.1:-56162229 | None:intergenic |
| TGATAAACACTTCCATTGTG+CGG | 0.679237 | 1.1:-56164134 | None:intergenic |
| TGTGTGGGTTCCCATTGTGG+AGG | 0.687282 | 1.1:+56162938 | MS.gene53009:CDS |
| GTTTGACAAATGGAAAGATG+TGG | 0.704359 | 1.1:+56163975 | MS.gene53009:CDS |
| GGTGAAGTGAAGTTAGCAGG+GGG | 0.723578 | 1.1:-56159891 | None:intergenic |
| TAACCTCCAAAATTGCATAG+CGG | 0.752415 | 1.1:-56162031 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAGTTAAAAATATTACA+GGG | - | chr1.1:56161721-56161740 | None:intergenic | 10.0% |
| !! | TATAAAGTTAAAAATATTAC+AGG | - | chr1.1:56161722-56161741 | None:intergenic | 10.0% |
| !!! | CAAATTTTTTATTTTTCTTT+TGG | + | chr1.1:56160868-56160887 | MS.gene53009:intron | 10.0% |
| !!! | TAAAAAAGAAATTTTCATTA+TGG | - | chr1.1:56160280-56160299 | None:intergenic | 10.0% |
| !! | AATATAGGTAAATATTACTT+TGG | - | chr1.1:56163448-56163467 | None:intergenic | 15.0% |
| !! | AATGAATATTGGAAAATTAA+AGG | + | chr1.1:56161679-56161698 | MS.gene53009:intron | 15.0% |
| !! | ATACTAAAGAAAAAAAGTTA+TGG | - | chr1.1:56161228-56161247 | None:intergenic | 15.0% |
| !! | TACTAAAGAAAAAAAGTTAT+GGG | - | chr1.1:56161227-56161246 | None:intergenic | 15.0% |
| !! | TTCCATAAAAATCATATAAA+TGG | + | chr1.1:56161294-56161313 | MS.gene53009:intron | 15.0% |
| !! | TTTATACTATTATTAGTACA+TGG | - | chr1.1:56163358-56163377 | None:intergenic | 15.0% |
| !!! | GTTACTAAAGATTTTTTTTT+AGG | - | chr1.1:56161252-56161271 | None:intergenic | 15.0% |
| !!! | TGAATGTTTTATATTTAAAC+AGG | + | chr1.1:56162785-56162804 | MS.gene53009:intron | 15.0% |
| !!! | TTTAACTTTATATAAAGGTT+TGG | + | chr1.1:56161730-56161749 | MS.gene53009:intron | 15.0% |
| !!! | TTTTAATTATGTGCTTATTT+GGG | - | chr1.1:56161516-56161535 | None:intergenic | 15.0% |
| !!! | TTTTTAATTATGTGCTTATT+TGG | - | chr1.1:56161517-56161536 | None:intergenic | 15.0% |
| !!! | TTTTTTTAGAGGAATATAAA+TGG | + | chr1.1:56161323-56161342 | MS.gene53009:intron | 15.0% |
| !! | AAAATAATTTCCTTCAGTAT+GGG | - | chr1.1:56162519-56162538 | None:intergenic | 20.0% |
| !! | AGCTATTTATGTAATAACTT+AGG | + | chr1.1:56161356-56161375 | MS.gene53009:intron | 20.0% |
| !! | ATAATTATGTCTCACAATAT+AGG | - | chr1.1:56163463-56163482 | None:intergenic | 20.0% |
| !! | ATTTCATATGATTCATGTTT+GGG | + | chr1.1:56163139-56163158 | MS.gene53009:CDS | 20.0% |
| !! | CATTGATATAAAGATTAAGT+GGG | + | chr1.1:56163244-56163263 | MS.gene53009:CDS | 20.0% |
| !! | GTAAATATTACTTTGGATTT+AGG | - | chr1.1:56163441-56163460 | None:intergenic | 20.0% |
| !! | TAAAATAATTTCCTTCAGTA+TGG | - | chr1.1:56162520-56162539 | None:intergenic | 20.0% |
| !!! | AAAAGAGCTTATATTCTTTT+TGG | - | chr1.1:56160773-56160792 | None:intergenic | 20.0% |
| !!! | AAAATGTGTGTTTTATTTAG+AGG | + | chr1.1:56160166-56160185 | MS.gene53009:intron | 20.0% |
| !!! | ACACTCATGATTTTTTTTTT+TGG | - | chr1.1:56160955-56160974 | None:intergenic | 20.0% |
| !!! | AGAAAAACATTTTCTATAAC+TGG | + | chr1.1:56160603-56160622 | MS.gene53009:intron | 20.0% |
| !!! | CTCATTAACTTTTTTTCTTT+AGG | + | chr1.1:56161130-56161149 | MS.gene53009:intron | 20.0% |
| !!! | CTCTTTTAAATTGTGATAAA+CGG | - | chr1.1:56160514-56160533 | None:intergenic | 20.0% |
| !!! | GACCATTTATATGATTTTTA+TGG | - | chr1.1:56161299-56161318 | None:intergenic | 20.0% |
| !!! | TAACTTGTTTGTTTATTACA+GGG | + | chr1.1:56159825-56159844 | MS.gene53009:intron | 20.0% |
| !!! | TACTAACCTTTTTTTTAACA+GGG | + | chr1.1:56162349-56162368 | MS.gene53009:intron | 20.0% |
| !!! | TCTTTTAAATTGTGATAAAC+GGG | - | chr1.1:56160513-56160532 | None:intergenic | 20.0% |
| !!! | TTAACTTGTTTGTTTATTAC+AGG | + | chr1.1:56159824-56159843 | MS.gene53009:intron | 20.0% |
| !!! | TTACTAACCTTTTTTTTAAC+AGG | + | chr1.1:56162348-56162367 | MS.gene53009:intron | 20.0% |
| ! | CATTTCATATGATTCATGTT+TGG | + | chr1.1:56163138-56163157 | MS.gene53009:CDS | 25.0% |
| ! | TAAAAAAAGAACGTAGAGAT+AGG | - | chr1.1:56159772-56159791 | None:intergenic | 25.0% |
| ! | TAACAAACTCATGATTTACA+GGG | - | chr1.1:56161195-56161214 | None:intergenic | 25.0% |
| ! | TAATCCCACGAATATAATAT+TGG | + | chr1.1:56161547-56161566 | MS.gene53009:intron | 25.0% |
| ! | TCTGATAATATTACATCATG+TGG | + | chr1.1:56163406-56163425 | MS.gene53009:intron | 25.0% |
| ! | TGCACATTGTATATGAATAA+CGG | + | chr1.1:56161753-56161772 | MS.gene53009:intron | 25.0% |
| ! | TTGTTGTATACTTTATATGC+AGG | - | chr1.1:56161401-56161420 | None:intergenic | 25.0% |
| ! | TTTACATGTAGTTTAGCATT+TGG | - | chr1.1:56159971-56159990 | None:intergenic | 25.0% |
| ! | TTTCATACAAAAATGAGTCA+GGG | + | chr1.1:56163878-56163897 | MS.gene53009:CDS | 25.0% |
| ! | TTTCATATGATTCATGTTTG+GGG | + | chr1.1:56163140-56163159 | MS.gene53009:CDS | 25.0% |
| ! | TTTGAAGAAAATCAATTCTG+AGG | + | chr1.1:56159923-56159942 | MS.gene53009:CDS | 25.0% |
| !! | ACCTTTTACATAATCTAAGT+TGG | + | chr1.1:56162301-56162320 | MS.gene53009:intron | 25.0% |
| !! | ATTTCCTTTGAAAAATGAAG+AGG | + | chr1.1:56163611-56163630 | MS.gene53009:intron | 25.0% |
| !! | CTTTTTGGATAGATTAATCT+TGG | - | chr1.1:56160758-56160777 | None:intergenic | 25.0% |
| !! | GCATTGATATAAAGATTAAG+TGG | + | chr1.1:56163243-56163262 | MS.gene53009:CDS | 25.0% |
| !! | TTTCCTTTGAAAAATGAAGA+GGG | + | chr1.1:56163612-56163631 | MS.gene53009:intron | 25.0% |
| !!! | AATGGTCGTTTTTTTTTTAG+AGG | + | chr1.1:56161312-56161331 | MS.gene53009:intron | 25.0% |
| !!! | CTTCACTTTTTAATCTAGTT+TGG | + | chr1.1:56162760-56162779 | MS.gene53009:intron | 25.0% |
| !!! | TATTTTTGGTACAAATCATG+TGG | + | chr1.1:56160039-56160058 | MS.gene53009:intron | 25.0% |
| !!! | TGAAATTATGGAAGTGTTTA+AGG | + | chr1.1:56162598-56162617 | MS.gene53009:CDS | 25.0% |
| AACAAACTCATGGGATTATA+GGG | - | chr1.1:56161100-56161119 | None:intergenic | 30.0% | |
| AACACTTCCATAATTTCAGT+CGG | - | chr1.1:56162596-56162615 | None:intergenic | 30.0% | |
| AAGAGAGATAGAGAGAAAAT+AGG | + | chr1.1:56161647-56161666 | MS.gene53009:intron | 30.0% | |
| AATAGTGGCATCATTTACTA+TGG | - | chr1.1:56163710-56163729 | None:intergenic | 30.0% | |
| AATTATGTGCTTATTTGGGA+AGG | - | chr1.1:56161512-56161531 | None:intergenic | 30.0% | |
| ACAAGTTGTCAAACTATTCA+TGG | + | chr1.1:56161853-56161872 | MS.gene53009:CDS | 30.0% | |
| ACATCATAATCAGCAAATTG+AGG | + | chr1.1:56162411-56162430 | MS.gene53009:CDS | 30.0% | |
| ACTGATCTCTCTATTAAAGA+TGG | + | chr1.1:56160715-56160734 | MS.gene53009:intron | 30.0% | |
| AGTGTCCAATATTATATTCG+TGG | - | chr1.1:56161555-56161574 | None:intergenic | 30.0% | |
| ATAACCCAATATACATCAAC+TGG | - | chr1.1:56162173-56162192 | None:intergenic | 30.0% | |
| CAACAATTCACCAAGTATTA+TGG | + | chr1.1:56163682-56163701 | MS.gene53009:CDS | 30.0% | |
| CAAGTTGTCAAACTATTCAT+GGG | + | chr1.1:56161854-56161873 | MS.gene53009:CDS | 30.0% | |
| CAATGTTGTAACAAACTCAT+GGG | - | chr1.1:56161109-56161128 | None:intergenic | 30.0% | |
| CACAAAGTTATCAACAACAT+GGG | - | chr1.1:56159729-56159748 | None:intergenic | 30.0% | |
| CATTGATGTGTTGAAAAAGA+AGG | + | chr1.1:56162812-56162831 | MS.gene53009:CDS | 30.0% | |
| CTTGTCAACAATAAAGAGAA+TGG | - | chr1.1:56163548-56163567 | None:intergenic | 30.0% | |
| CTTTCATACAAAAATGAGTC+AGG | + | chr1.1:56163877-56163896 | MS.gene53009:CDS | 30.0% | |
| GATTGATATCATCATTGAGT+TGG | + | chr1.1:56162082-56162101 | MS.gene53009:CDS | 30.0% | |
| GCCAACTTAGATTATGTAAA+AGG | - | chr1.1:56162305-56162324 | None:intergenic | 30.0% | |
| GGACAATGTTGAATGAATAT+TGG | + | chr1.1:56161668-56161687 | MS.gene53009:intron | 30.0% | |
| GTAACAAACTCATGATTTAC+AGG | - | chr1.1:56161196-56161215 | None:intergenic | 30.0% | |
| GTGTCCAATATTATATTCGT+GGG | - | chr1.1:56161554-56161573 | None:intergenic | 30.0% | |
| TAACAAACTCATGGGATTAT+AGG | - | chr1.1:56161101-56161120 | None:intergenic | 30.0% | |
| TAACCCAATATACATCAACT+GGG | - | chr1.1:56162172-56162191 | None:intergenic | 30.0% | |
| TAGAGAGTAATGTGCTAAAT+CGG | + | chr1.1:56161610-56161629 | MS.gene53009:intron | 30.0% | |
| TATGATCATATCCAGAAAAC+AGG | + | chr1.1:56162900-56162919 | MS.gene53009:CDS | 30.0% | |
| TCAATGTTGTAACAAACTCA+TGG | - | chr1.1:56161110-56161129 | None:intergenic | 30.0% | |
| TCACAAATCACTATACAGAT+TGG | + | chr1.1:56162443-56162462 | MS.gene53009:CDS | 30.0% | |
| TCTCTTCCCTGTTAAAAAAA+AGG | - | chr1.1:56162358-56162377 | None:intergenic | 30.0% | |
| TGAATAACGGTATTGTATGA+TGG | + | chr1.1:56161766-56161785 | MS.gene53009:intron | 30.0% | |
| TGAGCTAAGAGAAAAAAAGT+TGG | - | chr1.1:56161056-56161075 | None:intergenic | 30.0% | |
| ! | AAAATGTGGTTAACACCTTT+TGG | + | chr1.1:56163779-56163798 | MS.gene53009:CDS | 30.0% |
| ! | AAAGAAAGTGTGTAACAAGT+AGG | + | chr1.1:56160395-56160414 | MS.gene53009:intron | 30.0% |
| ! | AATTCCCAGTTGATGTATAT+TGG | + | chr1.1:56162165-56162184 | MS.gene53009:CDS | 30.0% |
| ! | ATATTTTCTTCCCATACTGA+AGG | + | chr1.1:56162506-56162525 | MS.gene53009:intron | 30.0% |
| ! | ATTCCCAGTTGATGTATATT+GGG | + | chr1.1:56162166-56162185 | MS.gene53009:CDS | 30.0% |
| ! | ATTTTCTTCAAAGTACACAG+CGG | - | chr1.1:56159915-56159934 | None:intergenic | 30.0% |
| !! | AGAGAGATCAGTTTGTTATT+AGG | - | chr1.1:56160707-56160726 | None:intergenic | 30.0% |
| !! | AGTGTTTGAAGTCATTTTGA+AGG | - | chr1.1:56161455-56161474 | None:intergenic | 30.0% |
| !! | ATCAAAAGTGTTTGATGTCA+TGG | - | chr1.1:56161489-56161508 | None:intergenic | 30.0% |
| !! | TCAAAAGTGTTTGATGTCAT+GGG | - | chr1.1:56161488-56161507 | None:intergenic | 30.0% |
| !! | TTCAATTGAGTTGATTTGCT+TGG | + | chr1.1:56163744-56163763 | MS.gene53009:CDS | 30.0% |
| !!! | CATTGATTCTTCTTTGGTTT+TGG | - | chr1.1:56163186-56163205 | None:intergenic | 30.0% |
| !!! | TTTTTTTTAACAGGGAAGAG+AGG | + | chr1.1:56162357-56162376 | MS.gene53009:intron | 30.0% |
| AAACTTACGAATCAGAAGTG+AGG | - | chr1.1:56162232-56162251 | None:intergenic | 35.0% | |
| AAAGTGTGTAACAAGTAGGA+CGG | + | chr1.1:56160399-56160418 | MS.gene53009:intron | 35.0% | |
| AAATGAGTATTCAAAGCCCT+TGG | - | chr1.1:56164007-56164026 | None:intergenic | 35.0% | |
| AATGACCCAAGAACTAATGT+GGG | + | chr1.1:56163202-56163221 | MS.gene53009:CDS | 35.0% | |
| ACAAACTCATGGGATTATAG+GGG | - | chr1.1:56161099-56161118 | None:intergenic | 35.0% | |
| ACAATCTGATTAAGGCAACA+TGG | + | chr1.1:56162054-56162073 | MS.gene53009:CDS | 35.0% | |
| ACACTTCCATAATTTCAGTC+GGG | - | chr1.1:56162595-56162614 | None:intergenic | 35.0% | |
| ACATGAATATCAAGCAAGTG+TGG | + | chr1.1:56159848-56159867 | MS.gene53009:CDS | 35.0% | |
| AGATTAAGTGGGTAAGTGTT+TGG | + | chr1.1:56163255-56163274 | MS.gene53009:intron | 35.0% | |
| AGCAATCACAATAGAACCTT+TGG | - | chr1.1:56163917-56163936 | None:intergenic | 35.0% | |
| AGTCTTTGTCTGCTTAATAG+TGG | - | chr1.1:56163725-56163744 | None:intergenic | 35.0% | |
| ATAACGGTATTGTATGATGG+TGG | + | chr1.1:56161769-56161788 | MS.gene53009:intron | 35.0% | |
| ATACAAAAATGAGTCAGGGT+GGG | + | chr1.1:56163882-56163901 | MS.gene53009:CDS | 35.0% | |
| ATTCATGTTTGGGGAGTAAA+GGG | + | chr1.1:56163149-56163168 | MS.gene53009:CDS | 35.0% | |
| CATCAACATTAGGAATCTCA+AGG | - | chr1.1:56164077-56164096 | None:intergenic | 35.0% | |
| CATCACTTTGCAACCATAAA+AGG | + | chr1.1:56163026-56163045 | MS.gene53009:CDS | 35.0% | |
| CATTTGCAGAGTTTGACAAA+TGG | + | chr1.1:56163965-56163984 | MS.gene53009:CDS | 35.0% | |
| CATTTGTGGAGGTAAAGATA+AGG | + | chr1.1:56163651-56163670 | MS.gene53009:CDS | 35.0% | |
| CTGAGTAACAATTGCAACAA+TGG | - | chr1.1:56162201-56162220 | None:intergenic | 35.0% | |
| CTTCATTATGGCCAAAGATT+TGG | - | chr1.1:56161970-56161989 | None:intergenic | 35.0% | |
| CTTGAGATTCCTAATGTTGA+TGG | + | chr1.1:56164075-56164094 | MS.gene53009:CDS | 35.0% | |
| GCACAAAGTTATCAACAACA+TGG | - | chr1.1:56159730-56159749 | None:intergenic | 35.0% | |
| GCTAAGAGAAAAAAAGTTGG+TGG | - | chr1.1:56161053-56161072 | None:intergenic | 35.0% | |
| GGAGGTTAACAATCTGATTA+AGG | + | chr1.1:56162046-56162065 | MS.gene53009:CDS | 35.0% | |
| GTTCTTGTTCATTTCAACCT+TGG | + | chr1.1:56162839-56162858 | MS.gene53009:CDS | 35.0% | |
| GTTTGACAAATGGAAAGATG+TGG | + | chr1.1:56163975-56163994 | MS.gene53009:CDS | 35.0% | |
| TAACCTCCAAAATTGCATAG+CGG | - | chr1.1:56162034-56162053 | None:intergenic | 35.0% | |
| TCATAGTTGAGATGTCTTCT+TGG | - | chr1.1:56162872-56162891 | None:intergenic | 35.0% | |
| TGATAAACACTTCCATTGTG+CGG | - | chr1.1:56164137-56164156 | None:intergenic | 35.0% | |
| TGTTTCCAGCAATGTTGAAA+AGG | - | chr1.1:56159691-56159710 | None:intergenic | 35.0% | |
| TTAGTGGAACCACAATAGAT+GGG | - | chr1.1:56162656-56162675 | None:intergenic | 35.0% | |
| TTTAGTGGAACCACAATAGA+TGG | - | chr1.1:56162657-56162676 | None:intergenic | 35.0% | |
| ! | AAAACACCGCTATGCAATTT+TGG | + | chr1.1:56162025-56162044 | MS.gene53009:CDS | 35.0% |
| ! | AACTATTCATGGGTTGCAAA+AGG | + | chr1.1:56161864-56161883 | MS.gene53009:CDS | 35.0% |
| ! | AATCAACCCACATTAGTTCT+TGG | - | chr1.1:56163211-56163230 | None:intergenic | 35.0% |
| ! | ACTCTCTACCTTTTTCCAAA+AGG | - | chr1.1:56163797-56163816 | None:intergenic | 35.0% |
| ! | ATCAACCCACATTAGTTCTT+GGG | - | chr1.1:56163210-56163229 | None:intergenic | 35.0% |
| ! | CATCAAACTTAGTGTCACTA+TGG | - | chr1.1:56159661-56159680 | None:intergenic | 35.0% |
| ! | CTATTTCTTACTCTCTCAAG+AGG | - | chr1.1:56161593-56161612 | None:intergenic | 35.0% |
| ! | GAATACCTTTTCAACATTGC+TGG | + | chr1.1:56159683-56159702 | MS.gene53009:CDS | 35.0% |
| ! | GGGATTTTTCCATCAACATT+AGG | - | chr1.1:56164087-56164106 | None:intergenic | 35.0% |
| ! | TATGAACCTGATGCCTTTTA+TGG | - | chr1.1:56163042-56163061 | None:intergenic | 35.0% |
| ! | TGTGACTGAAGAGAGATTTT+GGG | + | chr1.1:56160081-56160100 | MS.gene53009:intron | 35.0% |
| ! | TTGTGACTGAAGAGAGATTT+TGG | + | chr1.1:56160080-56160099 | MS.gene53009:intron | 35.0% |
| !! | AACACTAACCAGTGTTTTAG+TGG | - | chr1.1:56162672-56162691 | None:intergenic | 35.0% |
| !! | AGTCATTTTGAAGGAAAGAG+AGG | - | chr1.1:56161446-56161465 | None:intergenic | 35.0% |
| !! | GGTTAACACCTTTTGGAAAA+AGG | + | chr1.1:56163786-56163805 | MS.gene53009:CDS | 35.0% |
| !! | GTTTGTTTTCTCATGCATCT+TGG | - | chr1.1:56163830-56163849 | None:intergenic | 35.0% |
| !! | TCTGCTTTTGCTCTTGAATA+TGG | + | chr1.1:56161900-56161919 | MS.gene53009:CDS | 35.0% |
| !! | TTGGGTCATTGATTCTTCTT+TGG | - | chr1.1:56163192-56163211 | None:intergenic | 35.0% |
| !!! | CTTCTTTGGTTTTGGTGAAA+GGG | - | chr1.1:56163178-56163197 | None:intergenic | 35.0% |
| !!! | GGTGGTTTTGAGTTCAAATT+TGG | - | chr1.1:56161035-56161054 | None:intergenic | 35.0% |
| !!! | TCTTCTTTGGTTTTGGTGAA+AGG | - | chr1.1:56163179-56163198 | None:intergenic | 35.0% |
| !!! | TGTTTAAGGTGCTGATTTTC+TGG | + | chr1.1:56162612-56162631 | MS.gene53009:CDS | 35.0% |
| !!! | TTTTTTGAGCGATTCAGGTT+TGG | - | chr1.1:56162009-56162028 | None:intergenic | 35.0% |
| AAGCCAACACAAGATTGTGT+GGG | + | chr1.1:56162923-56162942 | MS.gene53009:CDS | 40.0% | |
| AAGTGATGCAACACATACCA+TGG | - | chr1.1:56163014-56163033 | None:intergenic | 40.0% | |
| AAGTGTGTAACAAGTAGGAC+GGG | + | chr1.1:56160400-56160419 | MS.gene53009:intron | 40.0% | |
| ACTCTCTCAAGAGGTAGAAT+GGG | - | chr1.1:56161584-56161603 | None:intergenic | 40.0% | |
| AGAACCACTTGCCAAATCTT+TGG | + | chr1.1:56161956-56161975 | MS.gene53009:CDS | 40.0% | |
| AGGCAGGACTTATCTCAATT+TGG | + | chr1.1:56162377-56162396 | MS.gene53009:CDS | 40.0% | |
| AGGCATCAGGTTCATAAAAG+AGG | + | chr1.1:56163046-56163065 | MS.gene53009:CDS | 40.0% | |
| ATCATTCCATTCCTCCACAA+TGG | - | chr1.1:56162952-56162971 | None:intergenic | 40.0% | |
| CAAAATGTGCTCATCAGACA+TGG | - | chr1.1:56159615-56159634 | None:intergenic | 40.0% | |
| CAAACTCATGGGATTATAGG+GGG | - | chr1.1:56161098-56161117 | None:intergenic | 40.0% | |
| CAATGACCCAAGAACTAATG+TGG | + | chr1.1:56163201-56163220 | MS.gene53009:CDS | 40.0% | |
| CACTTCCATAATTTCAGTCG+GGG | - | chr1.1:56162594-56162613 | None:intergenic | 40.0% | |
| CAGACATGGTTAAAGGGTTA+TGG | - | chr1.1:56159601-56159620 | None:intergenic | 40.0% | |
| CATACAAAAATGAGTCAGGG+TGG | + | chr1.1:56163881-56163900 | MS.gene53009:CDS | 40.0% | |
| CTCTTGAATATGGTGAGTTC+TGG | + | chr1.1:56161910-56161929 | MS.gene53009:CDS | 40.0% | |
| CTGGACACTCAATAAAGTCT+GGG | - | chr1.1:56164107-56164126 | None:intergenic | 40.0% | |
| GATGACACTGTCATCATTTG+TGG | + | chr1.1:56163637-56163656 | MS.gene53009:CDS | 40.0% | |
| GATTCATGTTTGGGGAGTAA+AGG | + | chr1.1:56163148-56163167 | MS.gene53009:CDS | 40.0% | |
| GCATTTCAAGCTGAATCCTT+TGG | + | chr1.1:56163073-56163092 | MS.gene53009:CDS | 40.0% | |
| GCTCATCAGACATGGTTAAA+GGG | - | chr1.1:56159607-56159626 | None:intergenic | 40.0% | |
| GGAGTCTCAACAACAAAATG+TGG | + | chr1.1:56163765-56163784 | MS.gene53009:CDS | 40.0% | |
| GGTTCTATTGTGATTGCTGT+TGG | + | chr1.1:56163919-56163938 | MS.gene53009:CDS | 40.0% | |
| GTACTCAACACAACAACCAA+AGG | - | chr1.1:56163092-56163111 | None:intergenic | 40.0% | |
| GTGCGATCACTTATTCACAT+TGG | + | chr1.1:56159557-56159576 | MS.gene53009:CDS | 40.0% | |
| GTGGAGGAATGGAATGATAA+GGG | + | chr1.1:56162954-56162973 | MS.gene53009:CDS | 40.0% | |
| GTGGAGGTAAAGATAAGGAA+TGG | + | chr1.1:56163656-56163675 | MS.gene53009:CDS | 40.0% | |
| GTTGTTGTGTTGAGTACACA+AGG | + | chr1.1:56163095-56163114 | MS.gene53009:CDS | 40.0% | |
| TAAGTGGGTAAGTGTTTGGT+TGG | + | chr1.1:56163259-56163278 | MS.gene53009:intron | 40.0% | |
| TACTATGGCGCCATAATACT+TGG | - | chr1.1:56163695-56163714 | None:intergenic | 40.0% | |
| TACTCTCTCAAGAGGTAGAA+TGG | - | chr1.1:56161585-56161604 | None:intergenic | 40.0% | |
| TATATCAATGCCAACCAGCA+CGG | - | chr1.1:56163234-56163253 | None:intergenic | 40.0% | |
| TCAAACCCCGACTGAAATTA+TGG | + | chr1.1:56162586-56162605 | MS.gene53009:CDS | 40.0% | |
| TCATTCCATTCCTCCACAAT+GGG | - | chr1.1:56162951-56162970 | None:intergenic | 40.0% | |
| TCTGGACACTCAATAAAGTC+TGG | - | chr1.1:56164108-56164127 | None:intergenic | 40.0% | |
| TGCTAAATCGGTGATGTGAT+AGG | + | chr1.1:56161622-56161641 | MS.gene53009:intron | 40.0% | |
| TGCTCATCAGACATGGTTAA+AGG | - | chr1.1:56159608-56159627 | None:intergenic | 40.0% | |
| TGGAGGAATGGAATGATAAG+GGG | + | chr1.1:56162955-56162974 | MS.gene53009:CDS | 40.0% | |
| TGTGAATAAGTGATCGCACT+AGG | - | chr1.1:56159556-56159575 | None:intergenic | 40.0% | |
| TGTGGAGGAATGGAATGATA+AGG | + | chr1.1:56162953-56162972 | MS.gene53009:CDS | 40.0% | |
| TTGTATGCAATTTCCTCACC+TGG | - | chr1.1:56161813-56161832 | None:intergenic | 40.0% | |
| TTGTGGTTCCACTAAAACAC+TGG | + | chr1.1:56162661-56162680 | MS.gene53009:CDS | 40.0% | |
| ! | ATTGTGATTGCTGTTGGTCA+TGG | + | chr1.1:56163925-56163944 | MS.gene53009:CDS | 40.0% |
| ! | CATGTCTGATGAGCACATTT+TGG | + | chr1.1:56159613-56159632 | MS.gene53009:CDS | 40.0% |
| ! | CCTTTGAAAAATGAAGAGGG+AGG | + | chr1.1:56163615-56163634 | MS.gene53009:intron | 40.0% |
| ! | TTGTGATTGCTGTTGGTCAT+GGG | + | chr1.1:56163926-56163945 | MS.gene53009:CDS | 40.0% |
| !! | CCTCCCTCTTCATTTTTCAA+AGG | - | chr1.1:56163618-56163637 | None:intergenic | 40.0% |
| !! | TATTGTATGATGGTGGCAGA+TGG | + | chr1.1:56161776-56161795 | MS.gene53009:intron | 40.0% |
| !! | TGGAAGTGTTTATCAGCTAC+AGG | + | chr1.1:56164142-56164161 | MS.gene53009:CDS | 40.0% |
| !! | TTGCAACCATAAAAGGCATC+AGG | + | chr1.1:56163033-56163052 | MS.gene53009:CDS | 40.0% |
| AAAGATGTGGTGAGCACCAA+GGG | + | chr1.1:56163988-56164007 | MS.gene53009:CDS | 45.0% | |
| AGGAATGGAATGATAAGGGG+AGG | + | chr1.1:56162958-56162977 | MS.gene53009:CDS | 45.0% | |
| ATGGCCAAAGATTTGGCAAG+TGG | - | chr1.1:56161963-56161982 | None:intergenic | 45.0% | |
| CCACAAACACCCATCTATTG+TGG | + | chr1.1:56162644-56162663 | MS.gene53009:CDS | 45.0% | |
| CCACAATAGATGGGTGTTTG+TGG | - | chr1.1:56162647-56162666 | None:intergenic | 45.0% | |
| CCATGGCATCTTAGACTTCA+AGG | - | chr1.1:56162997-56163016 | None:intergenic | 45.0% | |
| GAACCCACACAATCTTGTGT+TGG | - | chr1.1:56162929-56162948 | None:intergenic | 45.0% | |
| GAAGCCAACACAAGATTGTG+TGG | + | chr1.1:56162922-56162941 | MS.gene53009:CDS | 45.0% | |
| GACACTGTCATCATTTGTGG+AGG | + | chr1.1:56163640-56163659 | MS.gene53009:CDS | 45.0% | |
| TACAGGGTGTGTAGCTCAAA+TGG | - | chr1.1:56161179-56161198 | None:intergenic | 45.0% | |
| TCAAGCAAGTGTGGAGCAAT+TGG | + | chr1.1:56159857-56159876 | MS.gene53009:CDS | 45.0% | |
| ! | ACACCGCTATGCAATTTTGG+AGG | + | chr1.1:56162028-56162047 | MS.gene53009:CDS | 45.0% |
| ! | CAACATGGGTTGAACGTGTA+AGG | - | chr1.1:56159715-56159734 | None:intergenic | 45.0% |
| ! | CCTTGAAGTCTAAGATGCCA+TGG | + | chr1.1:56162994-56163013 | MS.gene53009:CDS | 45.0% |
| ! | GATTTGGCAAGTGGTTCTGT+TGG | - | chr1.1:56161954-56161973 | None:intergenic | 45.0% |
| ! | TTGAGGCACTCGCTTCATTA+TGG | - | chr1.1:56161982-56162001 | None:intergenic | 45.0% |
| ! | TTTTAACAGGGAAGAGAGGC+AGG | + | chr1.1:56162361-56162380 | MS.gene53009:intron | 45.0% |
| !! | GATTCAGGTTTGGTGAGTTG+AGG | - | chr1.1:56161999-56162018 | None:intergenic | 45.0% |
| !!! | CGGTGTTTTTTGAGCGATTC+AGG | - | chr1.1:56162014-56162033 | None:intergenic | 45.0% |
| !!! | TGTGTTGGCTTCCTGTTTTC+TGG | - | chr1.1:56162914-56162933 | None:intergenic | 45.0% |
| !! | AAAAAAAAATTATTACAAAA+TGG | - | chr1.1:56160439-56160458 | None:intergenic | 5.0% |
| !!! | ATATTTTTAACTTTATATAA+AGG | + | chr1.1:56161725-56161744 | MS.gene53009:intron | 5.0% |
| !!! | ATATTTTTAAGTAATATTTT+TGG | + | chr1.1:56160025-56160044 | MS.gene53009:intron | 5.0% |
| ACTGGGAATTGCTCCAAAGC+TGG | - | chr1.1:56162155-56162174 | None:intergenic | 50.0% | |
| AGCGGTGAAGTGAAGTTAGC+AGG | - | chr1.1:56159897-56159916 | None:intergenic | 50.0% | |
| AGGGGGTTGTGTAGCTCAAT+TGG | - | chr1.1:56161081-56161100 | None:intergenic | 50.0% | |
| CAACTCACGTCACGACATCA+AGG | + | chr1.1:56162112-56162131 | MS.gene53009:CDS | 50.0% | |
| CGGTGAAGTGAAGTTAGCAG+GGG | - | chr1.1:56159895-56159914 | None:intergenic | 50.0% | |
| GAAAGATGTGGTGAGCACCA+AGG | + | chr1.1:56163987-56164006 | MS.gene53009:CDS | 50.0% | |
| GATTGTGTGGGTTCCCATTG+TGG | + | chr1.1:56162935-56162954 | MS.gene53009:CDS | 50.0% | |
| GCGGTGAAGTGAAGTTAGCA+GGG | - | chr1.1:56159896-56159915 | None:intergenic | 50.0% | |
| GGGGGTTGTGTAGCTCAATT+GGG | - | chr1.1:56161080-56161099 | None:intergenic | 50.0% | |
| GGGTGGGCAATTGTAACCAA+AGG | + | chr1.1:56163898-56163917 | MS.gene53009:CDS | 50.0% | |
| GGTGAAGTGAAGTTAGCAGG+GGG | - | chr1.1:56159894-56159913 | None:intergenic | 50.0% | |
| GTCTTCTTGGCAGATGTCCA+AGG | - | chr1.1:56162859-56162878 | None:intergenic | 50.0% | |
| TCCAGATTGTCACCGCACAA+TGG | + | chr1.1:56164122-56164141 | MS.gene53009:CDS | 50.0% | |
| TCCATTGTGCGGTGACAATC+TGG | - | chr1.1:56164126-56164145 | None:intergenic | 50.0% | |
| ! | AGCTACAGGTGCTGCCATAA+TGG | + | chr1.1:56164156-56164175 | MS.gene53009:CDS | 50.0% |
| !! | AATGTGGGTTGATTCCGTGC+TGG | + | chr1.1:56163217-56163236 | MS.gene53009:CDS | 50.0% |
| ATGGTGGCAGATGGCATGCA+AGG | + | chr1.1:56161785-56161804 | MS.gene53009:intron | 55.0% | |
| GGGTTCCCATTGTGGAGGAA+TGG | + | chr1.1:56162943-56162962 | MS.gene53009:CDS | 55.0% | |
| TCCAAAGCTGGTGCAAGAGC+TGG | - | chr1.1:56162143-56162162 | None:intergenic | 55.0% | |
| TGTGTGGGTTCCCATTGTGG+AGG | + | chr1.1:56162938-56162957 | MS.gene53009:CDS | 55.0% | |
| !! | TGGGTTGATTCCGTGCTGGT+TGG | + | chr1.1:56163221-56163240 | MS.gene53009:CDS | 55.0% |
| CAGATGGCATGCAAGGCTCC+AGG | + | chr1.1:56161792-56161811 | MS.gene53009:intron | 60.0% | |
| GCCAGCTCTTGCACCAGCTT+TGG | + | chr1.1:56162139-56162158 | MS.gene53009:CDS | 60.0% | |
| GGCATGCAAGGCTCCAGGTG+AGG | + | chr1.1:56161797-56161816 | MS.gene53009:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 56159545 | 56164182 | 56159545 | ID=MS.gene53009 |
| chr1.1 | mRNA | 56159545 | 56164182 | 56159545 | ID=MS.gene53009.t1;Parent=MS.gene53009 |
| chr1.1 | exon | 56159545 | 56159751 | 56159545 | ID=MS.gene53009.t1.exon1;Parent=MS.gene53009.t1 |
| chr1.1 | CDS | 56159545 | 56159751 | 56159545 | ID=cds.MS.gene53009.t1;Parent=MS.gene53009.t1 |
| chr1.1 | exon | 56159846 | 56159944 | 56159846 | ID=MS.gene53009.t1.exon2;Parent=MS.gene53009.t1 |
| chr1.1 | CDS | 56159846 | 56159944 | 56159846 | ID=cds.MS.gene53009.t1;Parent=MS.gene53009.t1 |
| chr1.1 | exon | 56161795 | 56162243 | 56161795 | ID=MS.gene53009.t1.exon3;Parent=MS.gene53009.t1 |
| chr1.1 | CDS | 56161795 | 56162243 | 56161795 | ID=cds.MS.gene53009.t1;Parent=MS.gene53009.t1 |
| chr1.1 | exon | 56162370 | 56162464 | 56162370 | ID=MS.gene53009.t1.exon4;Parent=MS.gene53009.t1 |
| chr1.1 | CDS | 56162370 | 56162464 | 56162370 | ID=cds.MS.gene53009.t1;Parent=MS.gene53009.t1 |
| chr1.1 | exon | 56162549 | 56162682 | 56162549 | ID=MS.gene53009.t1.exon5;Parent=MS.gene53009.t1 |
| chr1.1 | CDS | 56162549 | 56162682 | 56162549 | ID=cds.MS.gene53009.t1;Parent=MS.gene53009.t1 |
| chr1.1 | exon | 56162807 | 56163265 | 56162807 | ID=MS.gene53009.t1.exon6;Parent=MS.gene53009.t1 |
| chr1.1 | CDS | 56162807 | 56163265 | 56162807 | ID=cds.MS.gene53009.t1;Parent=MS.gene53009.t1 |
| chr1.1 | exon | 56163631 | 56164182 | 56163631 | ID=MS.gene53009.t1.exon7;Parent=MS.gene53009.t1 |
| chr1.1 | CDS | 56163631 | 56164182 | 56163631 | ID=cds.MS.gene53009.t1;Parent=MS.gene53009.t1 |
| Gene Sequence |
| Protein sequence |
