Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53068.t1 | XP_003613878.1 | 99.1 | 333 | 3 | 0 | 1 | 333 | 155 | 487 | 7.70E-203 | 716.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53068.t1 | G7JWG4 | 99.1 | 333 | 3 | 0 | 1 | 333 | 155 | 487 | 5.5e-203 | 716.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052188 | MS.gene53068 | 0.801133 | 1.04E-48 | -1.69E-46 |
| MS.gene060495 | MS.gene53068 | 0.801121 | 1.05E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53068.t1 | MTR_5g042100 | 99.099 | 333 | 3 | 0 | 1 | 333 | 155 | 487 | 0.0 | 685 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53068.t1 | AT1G26761 | 59.475 | 343 | 129 | 5 | 1 | 333 | 102 | 444 | 3.79e-143 | 412 |
Find 90 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATGGAAATGGTGATTTA+AGG | 0.149315 | 5.4:-31015565 | MS.gene53068:CDS |
| TGGAATTAGATGGGTGAAAT+TGG | 0.156620 | 5.4:-31015477 | MS.gene53068:CDS |
| CATTCATTTGATAAGGAAAA+AGG | 0.213740 | 5.4:-31015533 | MS.gene53068:CDS |
| AAACCTTCAAATGATTTAAT+AGG | 0.237998 | 5.4:-31016034 | MS.gene53068:CDS |
| TTCTCATGATTTAAACCATT+TGG | 0.240997 | 5.4:+31015752 | None:intergenic |
| TAAGTCAAGATGGTAGAAAT+TGG | 0.253222 | 5.4:-31015685 | MS.gene53068:CDS |
| ACTCGCGGAATTAGGCCTTC+TGG | 0.254048 | 5.4:-31015899 | MS.gene53068:CDS |
| GGTTTAAATCATGAGAATTT+CGG | 0.313489 | 5.4:-31015746 | MS.gene53068:CDS |
| GGAATTAGATGGGTGAAATT+GGG | 0.336517 | 5.4:-31015476 | MS.gene53068:CDS |
| GGTGAAATTGGGGAAAATAA+TGG | 0.336849 | 5.4:-31015465 | MS.gene53068:CDS |
| TCTCATGATTTAAACCATTT+GGG | 0.337213 | 5.4:+31015753 | None:intergenic |
| ATGTCTAGTTACAGAGTTAG+AGG | 0.337901 | 5.4:-31015866 | MS.gene53068:CDS |
| GAGGTTCTAATGCTGTTTAT+TGG | 0.343998 | 5.4:-31015847 | MS.gene53068:CDS |
| GTTTCGATACTCGCGGAATT+AGG | 0.345083 | 5.4:-31015907 | MS.gene53068:CDS |
| GTGAAATTGGGGAAAATAAT+GGG | 0.348730 | 5.4:-31015464 | MS.gene53068:CDS |
| CTCGCGGAATTAGGCCTTCT+GGG | 0.356632 | 5.4:-31015898 | MS.gene53068:CDS |
| GGTCAAGAGATGGAATTAGA+TGG | 0.357401 | 5.4:-31015487 | MS.gene53068:CDS |
| CACCTGATGGGTTGATGGAA+TGG | 0.376304 | 5.4:-31015304 | MS.gene53068:CDS |
| TTTCGAGCAACGGTGTTCAT+TGG | 0.377175 | 5.4:-31016003 | MS.gene53068:CDS |
| GTATTATCATTCATTTGATA+AGG | 0.387153 | 5.4:-31015540 | MS.gene53068:CDS |
| ATGGGTTGATGGAATGGGTT+AGG | 0.396031 | 5.4:-31015298 | MS.gene53068:CDS |
| TTCGAGCAACGGTGTTCATT+GGG | 0.401282 | 5.4:-31016002 | MS.gene53068:CDS |
| CAAGTTGTTTATCATGGAAA+TGG | 0.403220 | 5.4:-31015575 | MS.gene53068:CDS |
| TCACCACAAGTTGTTTATCA+TGG | 0.407758 | 5.4:-31015581 | MS.gene53068:CDS |
| AAGCCTATTAAATCATTTGA+AGG | 0.408664 | 5.4:+31016031 | None:intergenic |
| ATGTCGGTAAAGAGAAAGAT+TGG | 0.410972 | 5.4:-31015622 | MS.gene53068:CDS |
| AATGGTGGTAGAGTTGGAAT+TGG | 0.443171 | 5.4:-31015146 | MS.gene53068:CDS |
| TGATGAATTGTGGTAAAGAT+TGG | 0.461891 | 5.4:-31015934 | MS.gene53068:CDS |
| AGTTTCACCTGATGGGTTGA+TGG | 0.470552 | 5.4:-31015309 | MS.gene53068:CDS |
| AAGTCAAGATGGTAGAAATT+GGG | 0.471060 | 5.4:-31015684 | MS.gene53068:CDS |
| AGAAATTGGGCTAGAATTGA+AGG | 0.475837 | 5.4:-31015671 | MS.gene53068:CDS |
| GGTGTTGCAGTTTCACCTGA+TGG | 0.476150 | 5.4:-31015317 | MS.gene53068:CDS |
| AATCATGAGAATTTCGGTAA+AGG | 0.479835 | 5.4:-31015740 | MS.gene53068:CDS |
| TGGCTTTATTACACCGGATA+CGG | 0.481215 | 5.4:-31015827 | MS.gene53068:CDS |
| AGATGGTACATGTGGTATCA+TGG | 0.481590 | 5.4:-31016070 | None:intergenic |
| TGGATAATGAAGAAAATGAA+TGG | 0.485792 | 5.4:-31015193 | MS.gene53068:CDS |
| ACCTGATGGGTTGATGGAAT+GGG | 0.486307 | 5.4:-31015303 | MS.gene53068:CDS |
| ACCCATTCCATCAACCCATC+AGG | 0.491138 | 5.4:+31015302 | None:intergenic |
| GCAAAATCAAGTTCTGATGT+TGG | 0.491582 | 5.4:-31015962 | MS.gene53068:CDS |
| TGGTATCATGGAAGACCAAA+AGG | 0.493308 | 5.4:-31016058 | MS.gene53068:CDS |
| TATAGAGGTGTTGGTAATGG+TGG | 0.494120 | 5.4:-31015161 | MS.gene53068:CDS |
| GTTCATTGGGAACGCGGTGG+AGG | 0.499247 | 5.4:-31015989 | MS.gene53068:CDS |
| GCCATCAGATGAAGGTTGTT+GGG | 0.501942 | 5.4:-31015252 | MS.gene53068:CDS |
| TGTTGGGATGATAAAGATGT+TGG | 0.507200 | 5.4:-31015236 | MS.gene53068:CDS |
| TACAGATTCAGAACCGTATC+CGG | 0.510816 | 5.4:+31015814 | None:intergenic |
| TGCCATCAGATGAAGGTTGT+TGG | 0.510863 | 5.4:-31015253 | MS.gene53068:CDS |
| TATTATAGAGGTGTTGGTAA+TGG | 0.512955 | 5.4:-31015164 | MS.gene53068:CDS |
| GTGTTGCAGTTTCACCTGAT+GGG | 0.513696 | 5.4:-31015316 | MS.gene53068:CDS |
| TGAAATTGGGGAAAATAATG+GGG | 0.515031 | 5.4:-31015463 | MS.gene53068:CDS |
| TGTCGGTAAAGAGAAAGATT+GGG | 0.517170 | 5.4:-31015621 | MS.gene53068:CDS |
| AGTAACGGAAGGAGGTGTAT+TGG | 0.518601 | 5.4:-31015338 | MS.gene53068:CDS |
| GAATGGAGATTGTATTATAG+AGG | 0.527631 | 5.4:-31015176 | MS.gene53068:CDS |
| GTTGGTAATGGTGGTAGAGT+TGG | 0.532316 | 5.4:-31015152 | MS.gene53068:CDS |
| TATGAAGGTGTAGGTAGTAA+CGG | 0.532525 | 5.4:-31015353 | MS.gene53068:CDS |
| GAAATTGGGGAAAATAATGG+GGG | 0.534807 | 5.4:-31015462 | MS.gene53068:CDS |
| GGCTTAGCAATTTCGAGCAA+CGG | 0.538014 | 5.4:-31016013 | MS.gene53068:CDS |
| AGATTGTATTATAGAGGTGT+TGG | 0.538098 | 5.4:-31015170 | MS.gene53068:CDS |
| GTTTATTGGCTTTATTACAC+CGG | 0.549416 | 5.4:-31015833 | MS.gene53068:CDS |
| GAATTAGATGGGTGAAATTG+GGG | 0.551001 | 5.4:-31015475 | MS.gene53068:CDS |
| TTTCCATGATAAACAACTTG+TGG | 0.555954 | 5.4:+31015578 | None:intergenic |
| AAGGTGTAGGTAGTAACGGA+AGG | 0.562042 | 5.4:-31015349 | MS.gene53068:CDS |
| GTCAAGAGATGGAATTAGAT+GGG | 0.566462 | 5.4:-31015486 | MS.gene53068:CDS |
| AATTATGTGATGGTTTATGA+AGG | 0.575057 | 5.4:-31015368 | MS.gene53068:CDS |
| ATTGAAGGAGAGCATCATAG+TGG | 0.576815 | 5.4:-31015656 | MS.gene53068:CDS |
| TCCCAACAACCTTCATCTGA+TGG | 0.581058 | 5.4:+31015251 | None:intergenic |
| ATGGGTTAGGCTTCAAGATG+AGG | 0.586508 | 5.4:-31015285 | MS.gene53068:CDS |
| GAATTGTGGTAAAGATTGGT+GGG | 0.587304 | 5.4:-31015930 | MS.gene53068:CDS |
| ATTGGAATGGCTGTTTCTGA+AGG | 0.593329 | 5.4:-31015128 | MS.gene53068:CDS |
| TGATGAATGCTTGTGTTACA+AGG | 0.593526 | 5.4:-31015406 | MS.gene53068:CDS |
| AATGGCTGTTTCTGAAGGGA+AGG | 0.594338 | 5.4:-31015123 | MS.gene53068:CDS |
| GGTTTAGCTATAAGTCAAGA+TGG | 0.596358 | 5.4:-31015695 | MS.gene53068:CDS |
| GGTATTGCTAGGTCAAGAGA+TGG | 0.596981 | 5.4:-31015497 | MS.gene53068:CDS |
| TGAATTGTGGTAAAGATTGG+TGG | 0.605208 | 5.4:-31015931 | MS.gene53068:CDS |
| AATTGTGGTAAAGATTGGTG+GGG | 0.605226 | 5.4:-31015929 | MS.gene53068:CDS |
| TTGGAATGGCTGTTTCTGAA+GGG | 0.605892 | 5.4:-31015127 | MS.gene53068:CDS |
| GTGTAGGTAGTAACGGAAGG+AGG | 0.606237 | 5.4:-31015346 | MS.gene53068:CDS |
| AGTGGAGCATTGATTAATGT+CGG | 0.609298 | 5.4:-31015638 | MS.gene53068:CDS |
| ATGATAAACAACTTGTGGTG+AGG | 0.624905 | 5.4:+31015583 | None:intergenic |
| AACGGTGTTCATTGGGAACG+CGG | 0.630404 | 5.4:-31015995 | MS.gene53068:CDS |
| AAATTGGGGAAAATAATGGG+GGG | 0.644713 | 5.4:-31015461 | MS.gene53068:CDS |
| TTATCCATATAAACAAAACA+AGG | 0.648044 | 5.4:+31015209 | None:intergenic |
| GTGATGGTTTATGAAGGTGT+AGG | 0.651498 | 5.4:-31015362 | MS.gene53068:CDS |
| GACATGATTAACAACCCAGA+AGG | 0.653259 | 5.4:+31015884 | None:intergenic |
| TGGTAGAGTTGGAATTGGAA+TGG | 0.658663 | 5.4:-31015141 | MS.gene53068:CDS |
| TGGTGGGGTTTCGATACTCG+CGG | 0.668074 | 5.4:-31015914 | MS.gene53068:CDS |
| GGTGTTCATTGGGAACGCGG+TGG | 0.687030 | 5.4:-31015992 | MS.gene53068:CDS |
| GTTACAAGGAACAAGAGTGG+TGG | 0.688481 | 5.4:-31015392 | MS.gene53068:CDS |
| GAGTGGTGGAAATTATGTGA+TGG | 0.693520 | 5.4:-31015378 | MS.gene53068:CDS |
| TCTTGACTTATAGCTAAACC+AGG | 0.700657 | 5.4:+31015698 | None:intergenic |
| TGTGTTACAAGGAACAAGAG+TGG | 0.758187 | 5.4:-31015395 | MS.gene53068:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACCTTCAAATGATTTAAT+AGG | - | chr5.4:31015109-31015128 | MS.gene53068:CDS | 20.0% |
| !! | GTATTATCATTCATTTGATA+AGG | - | chr5.4:31015603-31015622 | MS.gene53068:CDS | 20.0% |
| !! | TTATCCATATAAACAAAACA+AGG | + | chr5.4:31015937-31015956 | None:intergenic | 20.0% |
| !!! | ATATTAGAAGTTTTAGAAGA+TGG | - | chr5.4:31016043-31016062 | MS.gene53068:CDS | 20.0% |
| ! | AAGCCTATTAAATCATTTGA+AGG | + | chr5.4:31015115-31015134 | None:intergenic | 25.0% |
| ! | AATTATGTGATGGTTTATGA+AGG | - | chr5.4:31015775-31015794 | MS.gene53068:CDS | 25.0% |
| ! | CATTCATTTGATAAGGAAAA+AGG | - | chr5.4:31015610-31015629 | MS.gene53068:CDS | 25.0% |
| ! | GGTTTAAATCATGAGAATTT+CGG | - | chr5.4:31015397-31015416 | MS.gene53068:CDS | 25.0% |
| ! | TCTCATGATTTAAACCATTT+GGG | + | chr5.4:31015393-31015412 | None:intergenic | 25.0% |
| ! | TGGATAATGAAGAAAATGAA+TGG | - | chr5.4:31015950-31015969 | MS.gene53068:CDS | 25.0% |
| ! | TTCTCATGATTTAAACCATT+TGG | + | chr5.4:31015394-31015413 | None:intergenic | 25.0% |
| !!! | ATCACCTTGTTTTGTTTATA+TGG | - | chr5.4:31015930-31015949 | MS.gene53068:CDS | 25.0% |
| !!! | TTTAGTTTTGATAACCCAAA+TGG | - | chr5.4:31015376-31015395 | MS.gene53068:CDS | 25.0% |
| AAGTCAAGATGGTAGAAATT+GGG | - | chr5.4:31015459-31015478 | MS.gene53068:CDS | 30.0% | |
| AATCATGAGAATTTCGGTAA+AGG | - | chr5.4:31015403-31015422 | MS.gene53068:CDS | 30.0% | |
| ATCATGGAAATGGTGATTTA+AGG | - | chr5.4:31015578-31015597 | MS.gene53068:CDS | 30.0% | |
| CAAGTTGTTTATCATGGAAA+TGG | - | chr5.4:31015568-31015587 | MS.gene53068:CDS | 30.0% | |
| GAATGGAGATTGTATTATAG+AGG | - | chr5.4:31015967-31015986 | MS.gene53068:CDS | 30.0% | |
| GTGAAATTGGGGAAAATAAT+GGG | - | chr5.4:31015679-31015698 | MS.gene53068:CDS | 30.0% | |
| TAAGTCAAGATGGTAGAAAT+TGG | - | chr5.4:31015458-31015477 | MS.gene53068:CDS | 30.0% | |
| TGAAATTGGGGAAAATAATG+GGG | - | chr5.4:31015680-31015699 | MS.gene53068:CDS | 30.0% | |
| TGATGAATTGTGGTAAAGAT+TGG | - | chr5.4:31015209-31015228 | MS.gene53068:CDS | 30.0% | |
| TTTCCATGATAAACAACTTG+TGG | + | chr5.4:31015568-31015587 | None:intergenic | 30.0% | |
| ! | AGATTGTATTATAGAGGTGT+TGG | - | chr5.4:31015973-31015992 | MS.gene53068:CDS | 30.0% |
| ! | TCATTTGAAGGTTTTCCTTT+TGG | + | chr5.4:31015103-31015122 | None:intergenic | 30.0% |
| !! | GTTTATTGGCTTTATTACAC+CGG | - | chr5.4:31015310-31015329 | MS.gene53068:CDS | 30.0% |
| !! | TATTATAGAGGTGTTGGTAA+TGG | - | chr5.4:31015979-31015998 | MS.gene53068:CDS | 30.0% |
| !!! | AAGATTTTGAAGTCATTACC+TGG | - | chr5.4:31015427-31015446 | MS.gene53068:CDS | 30.0% |
| AATTGTGGTAAAGATTGGTG+GGG | - | chr5.4:31015214-31015233 | MS.gene53068:CDS | 35.0% | |
| ATGATAAACAACTTGTGGTG+AGG | + | chr5.4:31015563-31015582 | None:intergenic | 35.0% | |
| ATGTCGGTAAAGAGAAAGAT+TGG | - | chr5.4:31015521-31015540 | MS.gene53068:CDS | 35.0% | |
| ATGTCTAGTTACAGAGTTAG+AGG | - | chr5.4:31015277-31015296 | MS.gene53068:CDS | 35.0% | |
| GAAATTGGGGAAAATAATGG+GGG | - | chr5.4:31015681-31015700 | MS.gene53068:CDS | 35.0% | |
| GAATTAGATGGGTGAAATTG+GGG | - | chr5.4:31015668-31015687 | MS.gene53068:CDS | 35.0% | |
| GAATTGTGGTAAAGATTGGT+GGG | - | chr5.4:31015213-31015232 | MS.gene53068:CDS | 35.0% | |
| GGAATTAGATGGGTGAAATT+GGG | - | chr5.4:31015667-31015686 | MS.gene53068:CDS | 35.0% | |
| GGTGAAATTGGGGAAAATAA+TGG | - | chr5.4:31015678-31015697 | MS.gene53068:CDS | 35.0% | |
| GGTTTAGCTATAAGTCAAGA+TGG | - | chr5.4:31015448-31015467 | MS.gene53068:CDS | 35.0% | |
| GTCAAGAGATGGAATTAGAT+GGG | - | chr5.4:31015657-31015676 | MS.gene53068:CDS | 35.0% | |
| TCACCACAAGTTGTTTATCA+TGG | - | chr5.4:31015562-31015581 | MS.gene53068:CDS | 35.0% | |
| TCTTGACTTATAGCTAAACC+AGG | + | chr5.4:31015448-31015467 | None:intergenic | 35.0% | |
| TGAATTGTGGTAAAGATTGG+TGG | - | chr5.4:31015212-31015231 | MS.gene53068:CDS | 35.0% | |
| TGATGAATGCTTGTGTTACA+AGG | - | chr5.4:31015737-31015756 | MS.gene53068:CDS | 35.0% | |
| TGGAATTAGATGGGTGAAAT+TGG | - | chr5.4:31015666-31015685 | MS.gene53068:CDS | 35.0% | |
| TGTCGGTAAAGAGAAAGATT+GGG | - | chr5.4:31015522-31015541 | MS.gene53068:CDS | 35.0% | |
| TGTTGGGATGATAAAGATGT+TGG | - | chr5.4:31015907-31015926 | MS.gene53068:CDS | 35.0% | |
| ! | AAATTGGGGAAAATAATGGG+GGG | - | chr5.4:31015682-31015701 | MS.gene53068:CDS | 35.0% |
| ! | ACATCAGAACTTGATTTTGC+AGG | + | chr5.4:31015181-31015200 | None:intergenic | 35.0% |
| ! | AGAAATTGGGCTAGAATTGA+AGG | - | chr5.4:31015472-31015491 | MS.gene53068:CDS | 35.0% |
| ! | GAAAAAGGAGAGTTTTGCAT+AGG | - | chr5.4:31015625-31015644 | MS.gene53068:CDS | 35.0% |
| ! | GAGGTTCTAATGCTGTTTAT+TGG | - | chr5.4:31015296-31015315 | MS.gene53068:CDS | 35.0% |
| ! | GCAAAATCAAGTTCTGATGT+TGG | - | chr5.4:31015181-31015200 | MS.gene53068:CDS | 35.0% |
| ! | TATGAAGGTGTAGGTAGTAA+CGG | - | chr5.4:31015790-31015809 | MS.gene53068:CDS | 35.0% |
| !! | AGTGGAGCATTGATTAATGT+CGG | - | chr5.4:31015505-31015524 | MS.gene53068:CDS | 35.0% |
| !! | AGTTTTGCATAGGTATTGCT+AGG | - | chr5.4:31015635-31015654 | MS.gene53068:CDS | 35.0% |
| !! | ATTTTGATGCCATCAGATGA+AGG | - | chr5.4:31015883-31015902 | MS.gene53068:CDS | 35.0% |
| !! | GTTGGTTCTTTTGATGAGTT+AGG | - | chr5.4:31015712-31015731 | MS.gene53068:CDS | 35.0% |
| !!! | AGAAGTTTTAGAAGATGGAC+TGG | - | chr5.4:31016048-31016067 | MS.gene53068:CDS | 35.0% |
| !!! | GTTGGTTTTGTGATGAATTG+TGG | - | chr5.4:31015199-31015218 | MS.gene53068:CDS | 35.0% |
| AATGGTGGTAGAGTTGGAAT+TGG | - | chr5.4:31015997-31016016 | MS.gene53068:CDS | 40.0% | |
| GACATGATTAACAACCCAGA+AGG | + | chr5.4:31015262-31015281 | None:intergenic | 40.0% | |
| GGTCAAGAGATGGAATTAGA+TGG | - | chr5.4:31015656-31015675 | MS.gene53068:CDS | 40.0% | |
| TACAGATTCAGAACCGTATC+CGG | + | chr5.4:31015332-31015351 | None:intergenic | 40.0% | |
| TGGTAGAGTTGGAATTGGAA+TGG | - | chr5.4:31016002-31016021 | MS.gene53068:CDS | 40.0% | |
| TGGTATCATGGAAGACCAAA+AGG | - | chr5.4:31015085-31015104 | MS.gene53068:CDS | 40.0% | |
| TGTGTTACAAGGAACAAGAG+TGG | - | chr5.4:31015748-31015767 | MS.gene53068:CDS | 40.0% | |
| ! | GAGTGGTGGAAATTATGTGA+TGG | - | chr5.4:31015765-31015784 | MS.gene53068:CDS | 40.0% |
| ! | GTGATGGTTTATGAAGGTGT+AGG | - | chr5.4:31015781-31015800 | MS.gene53068:CDS | 40.0% |
| !! | ATTGAAGGAGAGCATCATAG+TGG | - | chr5.4:31015487-31015506 | MS.gene53068:CDS | 40.0% |
| !! | ATTGGAATGGCTGTTTCTGA+AGG | - | chr5.4:31016015-31016034 | MS.gene53068:CDS | 40.0% |
| !! | TATAGAGGTGTTGGTAATGG+TGG | - | chr5.4:31015982-31016001 | MS.gene53068:CDS | 40.0% |
| !! | TGGCTTTATTACACCGGATA+CGG | - | chr5.4:31015316-31015335 | MS.gene53068:CDS | 40.0% |
| !! | TTGGAATGGCTGTTTCTGAA+GGG | - | chr5.4:31016016-31016035 | MS.gene53068:CDS | 40.0% |
| GCCATCAGATGAAGGTTGTT+GGG | - | chr5.4:31015891-31015910 | MS.gene53068:CDS | 45.0% | |
| GGCTTAGCAATTTCGAGCAA+CGG | - | chr5.4:31015130-31015149 | MS.gene53068:CDS | 45.0% | |
| GGTATTGCTAGGTCAAGAGA+TGG | - | chr5.4:31015646-31015665 | MS.gene53068:CDS | 45.0% | |
| GTGTTGCAGTTTCACCTGAT+GGG | - | chr5.4:31015827-31015846 | MS.gene53068:CDS | 45.0% | |
| GTTACAAGGAACAAGAGTGG+TGG | - | chr5.4:31015751-31015770 | MS.gene53068:CDS | 45.0% | |
| GTTTCGATACTCGCGGAATT+AGG | - | chr5.4:31015236-31015255 | MS.gene53068:CDS | 45.0% | |
| TCCCAACAACCTTCATCTGA+TGG | + | chr5.4:31015895-31015914 | None:intergenic | 45.0% | |
| TGCCATCAGATGAAGGTTGT+TGG | - | chr5.4:31015890-31015909 | MS.gene53068:CDS | 45.0% | |
| TTCGAGCAACGGTGTTCATT+GGG | - | chr5.4:31015141-31015160 | MS.gene53068:CDS | 45.0% | |
| TTTCGAGCAACGGTGTTCAT+TGG | - | chr5.4:31015140-31015159 | MS.gene53068:CDS | 45.0% | |
| ! | AAGGTGTAGGTAGTAACGGA+AGG | - | chr5.4:31015794-31015813 | MS.gene53068:CDS | 45.0% |
| ! | AGTAACGGAAGGAGGTGTAT+TGG | - | chr5.4:31015805-31015824 | MS.gene53068:CDS | 45.0% |
| ! | ATAATGGGGGGAGGTAAAGT+TGG | - | chr5.4:31015694-31015713 | MS.gene53068:CDS | 45.0% |
| !! | AATGGCTGTTTCTGAAGGGA+AGG | - | chr5.4:31016020-31016039 | MS.gene53068:CDS | 45.0% |
| !! | ACCTGATGGGTTGATGGAAT+GGG | - | chr5.4:31015840-31015859 | MS.gene53068:CDS | 45.0% |
| !! | AGTTTCACCTGATGGGTTGA+TGG | - | chr5.4:31015834-31015853 | MS.gene53068:CDS | 45.0% |
| !! | ATGGGTTAGGCTTCAAGATG+AGG | - | chr5.4:31015858-31015877 | MS.gene53068:CDS | 45.0% |
| !! | ATGGGTTGATGGAATGGGTT+AGG | - | chr5.4:31015845-31015864 | MS.gene53068:CDS | 45.0% |
| !! | GTTGGTAATGGTGGTAGAGT+TGG | - | chr5.4:31015991-31016010 | MS.gene53068:CDS | 45.0% |
| AACGGTGTTCATTGGGAACG+CGG | - | chr5.4:31015148-31015167 | MS.gene53068:CDS | 50.0% | |
| ACCCATTCCATCAACCCATC+AGG | + | chr5.4:31015844-31015863 | None:intergenic | 50.0% | |
| ! | GGTGTTGCAGTTTCACCTGA+TGG | - | chr5.4:31015826-31015845 | MS.gene53068:CDS | 50.0% |
| ! | GTGTAGGTAGTAACGGAAGG+AGG | - | chr5.4:31015797-31015816 | MS.gene53068:CDS | 50.0% |
| ! | TTGGGGAAAATAATGGGGGG+AGG | - | chr5.4:31015685-31015704 | MS.gene53068:CDS | 50.0% |
| !! | CACCTGATGGGTTGATGGAA+TGG | - | chr5.4:31015839-31015858 | MS.gene53068:CDS | 50.0% |
| ACTCGCGGAATTAGGCCTTC+TGG | - | chr5.4:31015244-31015263 | MS.gene53068:CDS | 55.0% | |
| CTCGCGGAATTAGGCCTTCT+GGG | - | chr5.4:31015245-31015264 | MS.gene53068:CDS | 55.0% | |
| TGGTGGGGTTTCGATACTCG+CGG | - | chr5.4:31015229-31015248 | MS.gene53068:CDS | 55.0% | |
| GGTGTTCATTGGGAACGCGG+TGG | - | chr5.4:31015151-31015170 | MS.gene53068:CDS | 60.0% | |
| GTTCATTGGGAACGCGGTGG+AGG | - | chr5.4:31015154-31015173 | MS.gene53068:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 31015082 | 31016083 | 31015082 | ID=MS.gene53068 |
| chr5.4 | mRNA | 31015082 | 31016083 | 31015082 | ID=MS.gene53068.t1;Parent=MS.gene53068 |
| chr5.4 | exon | 31015082 | 31016083 | 31015082 | ID=MS.gene53068.t1.exon1;Parent=MS.gene53068.t1 |
| chr5.4 | CDS | 31015082 | 31016083 | 31015082 | ID=cds.MS.gene53068.t1;Parent=MS.gene53068.t1 |
| Gene Sequence |
| Protein sequence |
