Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53255.t1 | XP_003629840.2 | 85.4 | 316 | 45 | 1 | 1 | 315 | 1 | 316 | 1.20E-101 | 379.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53255.t1 | Q8LEJ6 | 52.3 | 174 | 75 | 5 | 87 | 258 | 31 | 198 | 4.8e-38 | 159.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53255.t1 | B7FJN1 | 85.4 | 316 | 45 | 1 | 1 | 315 | 1 | 316 | 8.9e-102 | 379.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056470 | MS.gene53255 | 0.885223 | 9.79E-72 | -1.69E-46 |
| MS.gene058848 | MS.gene53255 | 0.913924 | 3.50E-84 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53255.t1 | MTR_8g087460 | 96.519 | 316 | 10 | 1 | 1 | 315 | 1 | 316 | 0.0 | 588 |
| MS.gene53255.t1 | MTR_8g087470 | 95.886 | 316 | 12 | 1 | 1 | 315 | 1 | 316 | 0.0 | 526 |
| MS.gene53255.t1 | MTR_2g017950 | 61.812 | 309 | 75 | 8 | 15 | 312 | 15 | 291 | 3.03e-108 | 317 |
| MS.gene53255.t1 | MTR_4g059840 | 52.308 | 260 | 94 | 8 | 4 | 256 | 2 | 238 | 6.80e-72 | 224 |
| MS.gene53255.t1 | MTR_4g053380 | 51.504 | 266 | 102 | 9 | 6 | 265 | 6 | 250 | 6.56e-70 | 219 |
| MS.gene53255.t1 | MTR_4g059790 | 52.500 | 240 | 85 | 7 | 23 | 256 | 22 | 238 | 1.15e-67 | 213 |
| MS.gene53255.t1 | MTR_2g093970 | 43.279 | 305 | 142 | 8 | 13 | 312 | 10 | 288 | 9.38e-62 | 198 |
| MS.gene53255.t1 | MTR_2g017970 | 50.435 | 230 | 88 | 7 | 93 | 315 | 68 | 278 | 1.36e-60 | 195 |
| MS.gene53255.t1 | MTR_4g059720 | 50.855 | 234 | 60 | 6 | 13 | 244 | 10 | 190 | 1.96e-60 | 193 |
| MS.gene53255.t1 | MTR_2g017960 | 50.893 | 224 | 93 | 5 | 93 | 315 | 68 | 275 | 2.45e-60 | 194 |
| MS.gene53255.t1 | MTR_2g093980 | 51.754 | 228 | 93 | 7 | 55 | 281 | 42 | 253 | 3.58e-59 | 191 |
| MS.gene53255.t1 | MTR_2g093990 | 56.667 | 180 | 73 | 3 | 66 | 244 | 14 | 189 | 1.56e-57 | 186 |
| MS.gene53255.t1 | MTR_8g087450 | 51.802 | 222 | 93 | 7 | 22 | 242 | 16 | 224 | 7.53e-56 | 183 |
| MS.gene53255.t1 | MTR_4g059780 | 57.426 | 202 | 69 | 8 | 42 | 242 | 52 | 237 | 6.62e-55 | 181 |
| MS.gene53255.t1 | MTR_7g101080 | 50.000 | 158 | 72 | 4 | 87 | 242 | 35 | 187 | 8.46e-44 | 150 |
| MS.gene53255.t1 | MTR_2g090765 | 41.899 | 179 | 94 | 6 | 66 | 242 | 14 | 184 | 1.38e-28 | 110 |
| MS.gene53255.t1 | MTR_5g098060 | 31.395 | 172 | 114 | 2 | 92 | 263 | 47 | 214 | 7.74e-18 | 82.0 |
| MS.gene53255.t1 | MTR_7g075453 | 33.333 | 189 | 105 | 6 | 74 | 256 | 165 | 338 | 1.18e-15 | 77.4 |
| MS.gene53255.t1 | MTR_2g437700 | 31.410 | 156 | 96 | 4 | 92 | 242 | 194 | 343 | 6.37e-14 | 72.4 |
| MS.gene53255.t1 | MTR_5g098420 | 30.978 | 184 | 103 | 7 | 76 | 255 | 188 | 351 | 5.48e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53255.t1 | AT5G03170 | 50.526 | 190 | 83 | 6 | 71 | 258 | 18 | 198 | 7.45e-52 | 171 |
| MS.gene53255.t1 | AT5G60490 | 56.376 | 149 | 59 | 3 | 93 | 239 | 39 | 183 | 7.04e-48 | 161 |
| MS.gene53255.t1 | AT2G20520 | 41.451 | 193 | 103 | 6 | 66 | 255 | 15 | 200 | 1.99e-31 | 118 |
| MS.gene53255.t1 | AT5G44130 | 40.120 | 167 | 93 | 4 | 92 | 255 | 35 | 197 | 5.76e-27 | 106 |
| MS.gene53255.t1 | AT1G03870 | 34.389 | 221 | 124 | 6 | 92 | 310 | 38 | 239 | 4.80e-26 | 103 |
| MS.gene53255.t1 | AT3G46550 | 32.544 | 169 | 103 | 4 | 92 | 255 | 206 | 368 | 6.12e-18 | 84.3 |
| MS.gene53255.t1 | AT3G60900 | 30.000 | 180 | 115 | 3 | 93 | 270 | 190 | 360 | 1.11e-11 | 65.5 |
| MS.gene53255.t1 | AT2G04780 | 30.667 | 150 | 96 | 4 | 92 | 239 | 45 | 188 | 5.04e-11 | 62.4 |
| MS.gene53255.t1 | AT2G04780 | 30.667 | 150 | 96 | 4 | 92 | 239 | 45 | 188 | 5.04e-11 | 62.4 |
Find 93 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTCAATGGTGGGTCCTTT+TGG | 0.235120 | 4.1:+13204516 | None:intergenic |
| GCCTCTTGATCTTGTTCTTC+CGG | 0.272392 | 4.1:-13204061 | MS.gene53255:CDS |
| TAGCAAACTTGCTATTTATC+AGG | 0.275231 | 4.1:-13204100 | MS.gene53255:CDS |
| GGTGCTGTTGCTGTTGTTGC+TGG | 0.314474 | 4.1:+13204612 | None:intergenic |
| CAACTGAACGTCACTACTTA+TGG | 0.325511 | 4.1:-13204189 | MS.gene53255:CDS |
| GTTGCTGTTGTTGCTGGTAA+TGG | 0.333085 | 4.1:+13204618 | None:intergenic |
| GAGGAACCCTGCTTTGAGTT+TGG | 0.336926 | 4.1:+13204341 | None:intergenic |
| CCTGCGGATGTTTCTGCCGC+AGG | 0.350512 | 4.1:-13203913 | MS.gene53255:CDS |
| GGGTGGAATTGGTGAGAGTT+GGG | 0.354472 | 4.1:+13204692 | None:intergenic |
| TTGGAGAACGCAGAATCTTC+TGG | 0.359888 | 4.1:+13204360 | None:intergenic |
| TCACCGGCTTGTGTTTGAAC+AGG | 0.366430 | 4.1:+13204225 | None:intergenic |
| GGGGTGGAATTGGTGAGAGT+TGG | 0.379400 | 4.1:+13204691 | None:intergenic |
| TGCTATTTATCAGGTTGATA+AGG | 0.394299 | 4.1:-13204091 | MS.gene53255:CDS |
| AATTAGAACGGAGAACCTTT+TGG | 0.395304 | 4.1:+13204473 | None:intergenic |
| TTTGGAATGGGTTTGGTTGG+TGG | 0.406116 | 4.1:-13203862 | MS.gene53255:CDS |
| TGGTGGCAGTCAAGTTAGTA+TGG | 0.408478 | 4.1:-13204169 | MS.gene53255:CDS |
| GCAGTTAATGCTACCGTTAC+CGG | 0.409190 | 4.1:-13204138 | MS.gene53255:CDS |
| TGATCTTGTTCTTCCGGCTA+AGG | 0.420269 | 4.1:-13204055 | MS.gene53255:CDS |
| TCCGGCTAAGGCTCCATCTC+TGG | 0.421914 | 4.1:-13204043 | MS.gene53255:CDS |
| TCTGGCTCCGGCACCAGCTA+AGG | 0.426782 | 4.1:-13204025 | MS.gene53255:CDS |
| GGTGCACCAGTTGGTGTTGT+TGG | 0.431617 | 4.1:+13204558 | None:intergenic |
| GGTGATGGAGATGATGTTGT+AGG | 0.435283 | 4.1:+13204669 | None:intergenic |
| TGTTTGAACAGGGTTGGTTA+AGG | 0.439720 | 4.1:+13204236 | None:intergenic |
| GGGACTGTTATGGTGGGTGA+TGG | 0.441052 | 4.1:+13204537 | None:intergenic |
| CATAATCAACATTCTTCAAA+AGG | 0.442515 | 4.1:-13204496 | MS.gene53255:CDS |
| AAGGGTTTGTTGCCTAAGGC+TGG | 0.443081 | 4.1:-13204006 | MS.gene53255:CDS |
| GTATCATCACCATCAGGTTC+AGG | 0.443291 | 4.1:-13204402 | MS.gene53255:CDS |
| CGATGCTGTTGTTGATGGTA+AGG | 0.444048 | 4.1:+13204644 | None:intergenic |
| AAGAATGTTGATTATGTCAA+TGG | 0.455371 | 4.1:+13204503 | None:intergenic |
| GTGATGGAGATGATGTTGTA+GGG | 0.461192 | 4.1:+13204670 | None:intergenic |
| GCGTTCTCCAAACTCAAAGC+AGG | 0.468677 | 4.1:-13204348 | MS.gene53255:CDS |
| AGCTAAGGGTTTGTTGCCTA+AGG | 0.471832 | 4.1:-13204010 | MS.gene53255:CDS |
| CTTGTTCCAACAACACCAAC+TGG | 0.476196 | 4.1:-13204564 | MS.gene53255:CDS |
| TGGTGAGAGTTGGGCTAAAG+TGG | 0.489699 | 4.1:+13204701 | None:intergenic |
| GTCTATCAGTGAGGGAGTTG+AGG | 0.498053 | 4.1:+13204322 | None:intergenic |
| AACAAACCCTTAGCTGGTGC+CGG | 0.498056 | 4.1:+13204018 | None:intergenic |
| CTGCGGATGTTTCTGCCGCA+GGG | 0.500964 | 4.1:-13203912 | MS.gene53255:CDS |
| TTAGGCAACAAACCCTTAGC+TGG | 0.504481 | 4.1:+13204012 | None:intergenic |
| GGCTTGTGTTTGAACAGGGT+TGG | 0.506531 | 4.1:+13204230 | None:intergenic |
| GGTGGCGATGCTGTTGTTGA+TGG | 0.507303 | 4.1:+13204639 | None:intergenic |
| CACCGGCTTGTGTTTGAACA+GGG | 0.508119 | 4.1:+13204226 | None:intergenic |
| GTAGACGATGGCAGTGGTGC+TGG | 0.509847 | 4.1:-13203964 | MS.gene53255:CDS |
| ACATTCTTCAAAAGGCCAAA+AGG | 0.512960 | 4.1:-13204488 | MS.gene53255:CDS |
| CTGCCGCAGGGTCTGTGATG+TGG | 0.514851 | 4.1:-13203900 | MS.gene53255:CDS |
| GCCAGAGATGGAGCCTTAGC+CGG | 0.520251 | 4.1:+13204042 | None:intergenic |
| CAGCTAGTATCATCACCATC+AGG | 0.530331 | 4.1:-13204408 | MS.gene53255:CDS |
| CTGGCTCCGGCACCAGCTAA+GGG | 0.532888 | 4.1:-13204024 | MS.gene53255:CDS |
| TAAGGCTCCATCTCTGGCTC+CGG | 0.533797 | 4.1:-13204037 | MS.gene53255:CDS |
| AGTCAAGTTAGTATGGCTAC+TGG | 0.539108 | 4.1:-13204162 | MS.gene53255:CDS |
| AGTGGAACTGTGCTTAATCC+TGG | 0.544466 | 4.1:+13204585 | None:intergenic |
| TGATGGAGATGATGTTGTAG+GGG | 0.546507 | 4.1:+13204671 | None:intergenic |
| GCTGGTGCCGGAGCCAGAGA+TGG | 0.548351 | 4.1:+13204030 | None:intergenic |
| AGTGGTGCTGGTAGTGATGA+TGG | 0.554877 | 4.1:-13203952 | MS.gene53255:CDS |
| GTTGGTGTTGTTGGAACAAG+TGG | 0.555566 | 4.1:+13204567 | None:intergenic |
| GTTGATGGTAAGGGTGGTGA+TGG | 0.560733 | 4.1:+13204654 | None:intergenic |
| CCCACCATAACAGTCCCAAA+AGG | 0.562203 | 4.1:-13204531 | MS.gene53255:CDS |
| ATAAATAGCAAGTTTGCTAT+CGG | 0.562446 | 4.1:+13204104 | None:intergenic |
| ATACTAGCTGCGAGTTGAGT+TGG | 0.564006 | 4.1:+13204421 | None:intergenic |
| GGTATAAACAGTACCGGTAA+CGG | 0.565166 | 4.1:+13204125 | None:intergenic |
| GTGGGTGATGGTGCACCAGT+TGG | 0.574265 | 4.1:+13204549 | None:intergenic |
| TGCCGCAGGGTCTGTGATGT+GGG | 0.575041 | 4.1:-13203899 | MS.gene53255:CDS |
| AACCCTGTTCAAACACAAGC+CGG | 0.576254 | 4.1:-13204228 | MS.gene53255:CDS |
| AATTGCTAGAAGAAGAAATG+AGG | 0.579432 | 4.1:+13204740 | None:intergenic |
| TGCTAGAAGAAGAAATGAGG+TGG | 0.583738 | 4.1:+13204743 | None:intergenic |
| CACAAGCCGGTGATGATGCT+AGG | 0.584174 | 4.1:-13204215 | MS.gene53255:CDS |
| GATGGAGATGATGTTGTAGG+GGG | 0.584616 | 4.1:+13204672 | None:intergenic |
| GAGTTGGGCTAAAGTGGTGG+AGG | 0.587512 | 4.1:+13204707 | None:intergenic |
| TGAGAGTTGGGCTAAAGTGG+TGG | 0.590350 | 4.1:+13204704 | None:intergenic |
| TCGGTTGTAGACGATGGCAG+TGG | 0.591876 | 4.1:-13203970 | MS.gene53255:CDS |
| ACAGCAACAGCACCATCACC+AGG | 0.599988 | 4.1:-13204603 | MS.gene53255:CDS |
| CGTTCTCCAAACTCAAAGCA+GGG | 0.603196 | 4.1:-13204347 | MS.gene53255:CDS |
| ACTGTGCTTAATCCTGGTGA+TGG | 0.604248 | 4.1:+13204591 | None:intergenic |
| GCTATCGGTATAAACAGTAC+CGG | 0.606873 | 4.1:+13204119 | None:intergenic |
| TCATCACCATCAGGTTCAGG+AGG | 0.610251 | 4.1:-13204399 | MS.gene53255:CDS |
| TTTGAGAAGACGAATTAGAA+CGG | 0.612652 | 4.1:+13204461 | None:intergenic |
| GCCGGAAGAACAAGATCAAG+AGG | 0.613702 | 4.1:+13204060 | None:intergenic |
| AATGTTGATTATGTCAATGG+TGG | 0.616748 | 4.1:+13204506 | None:intergenic |
| GCTGTTGTTGCTGGTAATGG+TGG | 0.619693 | 4.1:+13204621 | None:intergenic |
| TTGAAGCCTAGCATCATCAC+CGG | 0.621788 | 4.1:+13204209 | None:intergenic |
| CTGAACGTCACTACTTATGG+TGG | 0.628986 | 4.1:-13204186 | MS.gene53255:CDS |
| CCTGCGGCAGAAACATCCGC+AGG | 0.629386 | 4.1:+13203913 | None:intergenic |
| AAATCGAAACGAATGAAGCG+AGG | 0.637672 | 4.1:+13204271 | None:intergenic |
| GATGCTGTTGTTGATGGTAA+GGG | 0.638676 | 4.1:+13204645 | None:intergenic |
| AATCGAAACGAATGAAGCGA+GGG | 0.648536 | 4.1:+13204272 | None:intergenic |
| TAGTGATGATGGTGATGGCA+AGG | 0.649260 | 4.1:-13203941 | MS.gene53255:CDS |
| GTTAACCCTCCTGAACCTGA+TGG | 0.664853 | 4.1:+13204393 | None:intergenic |
| AATTCATCGGTTGTAGACGA+TGG | 0.674617 | 4.1:-13203976 | MS.gene53255:CDS |
| GCTGGTAGTGATGATGGTGA+TGG | 0.674633 | 4.1:-13203946 | MS.gene53255:CDS |
| ATGTTGATTATGTCAATGGT+GGG | 0.681774 | 4.1:+13204507 | None:intergenic |
| GCTGTTGTTGATGGTAAGGG+TGG | 0.686845 | 4.1:+13204648 | None:intergenic |
| TACCCACATCACAGACCCTG+CGG | 0.690242 | 4.1:+13203897 | None:intergenic |
| TGATGGCAAGGCTTTGCCTG+CGG | 0.695763 | 4.1:-13203929 | MS.gene53255:CDS |
| CATCACCATCAGGTTCAGGA+GGG | 0.700637 | 4.1:-13204398 | MS.gene53255:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CATAATCAACATTCTTCAAA+AGG | - | chr4.1:13204127-13204146 | MS.gene53255:CDS | 25.0% |
| !! | AAGAATGTTGATTATGTCAA+TGG | + | chr4.1:13204123-13204142 | None:intergenic | 25.0% |
| !!! | ATAAATAGCAAGTTTGCTAT+CGG | + | chr4.1:13204522-13204541 | None:intergenic | 25.0% |
| AATTGCTAGAAGAAGAAATG+AGG | + | chr4.1:13203886-13203905 | None:intergenic | 30.0% | |
| TTTGAGAAGACGAATTAGAA+CGG | + | chr4.1:13204165-13204184 | None:intergenic | 30.0% | |
| ! | AACTTTTTGTCTATCAGTGA+GGG | + | chr4.1:13204312-13204331 | None:intergenic | 30.0% |
| ! | AATGTTGATTATGTCAATGG+TGG | + | chr4.1:13204120-13204139 | None:intergenic | 30.0% |
| ! | ATGTTGATTATGTCAATGGT+GGG | + | chr4.1:13204119-13204138 | None:intergenic | 30.0% |
| !! | TAGCAAACTTGCTATTTATC+AGG | - | chr4.1:13204523-13204542 | MS.gene53255:CDS | 30.0% |
| !! | TGCTATTTATCAGGTTGATA+AGG | - | chr4.1:13204532-13204551 | MS.gene53255:CDS | 30.0% |
| !!! | AAACGTTGTTGTTTTTGGAA+TGG | - | chr4.1:13204748-13204767 | MS.gene53255:CDS | 30.0% |
| !!! | AACGTTGTTGTTTTTGGAAT+GGG | - | chr4.1:13204749-13204768 | MS.gene53255:CDS | 30.0% |
| ACATTCTTCAAAAGGCCAAA+AGG | - | chr4.1:13204135-13204154 | MS.gene53255:CDS | 35.0% | |
| AGAATCTTCTGGTGCAAAAA+TGG | + | chr4.1:13204255-13204274 | None:intergenic | 35.0% | |
| GGCTGGAAAAACTAATTCAT+CGG | - | chr4.1:13204634-13204653 | MS.gene53255:CDS | 35.0% | |
| ! | AATTAGAACGGAGAACCTTT+TGG | + | chr4.1:13204153-13204172 | None:intergenic | 35.0% |
| ! | CAACTTTTTGTCTATCAGTG+AGG | + | chr4.1:13204313-13204332 | None:intergenic | 35.0% |
| !!! | GAATTAGTTTTTCCAGCCTT+AGG | + | chr4.1:13204632-13204651 | None:intergenic | 35.0% |
| !!! | TGGGTAAACGTTGTTGTTTT+TGG | - | chr4.1:13204743-13204762 | MS.gene53255:CDS | 35.0% |
| !!! | TGTTGTTTTTGGAATGGGTT+TGG | - | chr4.1:13204754-13204773 | MS.gene53255:CDS | 35.0% |
| AAATCGAAACGAATGAAGCG+AGG | + | chr4.1:13204355-13204374 | None:intergenic | 40.0% | |
| AATCGAAACGAATGAAGCGA+GGG | + | chr4.1:13204354-13204373 | None:intergenic | 40.0% | |
| AGTCAAGTTAGTATGGCTAC+TGG | - | chr4.1:13204461-13204480 | MS.gene53255:CDS | 40.0% | |
| CAACTGAACGTCACTACTTA+TGG | - | chr4.1:13204434-13204453 | MS.gene53255:CDS | 40.0% | |
| GCTATCGGTATAAACAGTAC+CGG | + | chr4.1:13204507-13204526 | None:intergenic | 40.0% | |
| TGATGGAGATGATGTTGTAG+GGG | + | chr4.1:13203955-13203974 | None:intergenic | 40.0% | |
| TGCTAGAAGAAGAAATGAGG+TGG | + | chr4.1:13203883-13203902 | None:intergenic | 40.0% | |
| ! | AATTCATCGGTTGTAGACGA+TGG | - | chr4.1:13204647-13204666 | MS.gene53255:CDS | 40.0% |
| ! | GTGATGGAGATGATGTTGTA+GGG | + | chr4.1:13203956-13203975 | None:intergenic | 40.0% |
| !! | GATGCTGTTGTTGATGGTAA+GGG | + | chr4.1:13203981-13204000 | None:intergenic | 40.0% |
| !! | GGTATAAACAGTACCGGTAA+CGG | + | chr4.1:13204501-13204520 | None:intergenic | 40.0% |
| !! | TGTTTGAACAGGGTTGGTTA+AGG | + | chr4.1:13204390-13204409 | None:intergenic | 40.0% |
| !!! | GTTTTTGGAATGGGTTTGGT+TGG | - | chr4.1:13204758-13204777 | MS.gene53255:CDS | 40.0% |
| AACCCTGTTCAAACACAAGC+CGG | - | chr4.1:13204395-13204414 | MS.gene53255:CDS | 45.0% | |
| ACTGTGCTTAATCCTGGTGA+TGG | + | chr4.1:13204035-13204054 | None:intergenic | 45.0% | |
| AGTGGAACTGTGCTTAATCC+TGG | + | chr4.1:13204041-13204060 | None:intergenic | 45.0% | |
| CAGCTAGTATCATCACCATC+AGG | - | chr4.1:13204215-13204234 | MS.gene53255:CDS | 45.0% | |
| CGTTCTCCAAACTCAAAGCA+GGG | - | chr4.1:13204276-13204295 | MS.gene53255:CDS | 45.0% | |
| CTGAACGTCACTACTTATGG+TGG | - | chr4.1:13204437-13204456 | MS.gene53255:CDS | 45.0% | |
| CTTGTTCCAACAACACCAAC+TGG | - | chr4.1:13204059-13204078 | MS.gene53255:CDS | 45.0% | |
| GATGGAGATGATGTTGTAGG+GGG | + | chr4.1:13203954-13203973 | None:intergenic | 45.0% | |
| GCAGTTAATGCTACCGTTAC+CGG | - | chr4.1:13204485-13204504 | MS.gene53255:CDS | 45.0% | |
| GCCTCTTGATCTTGTTCTTC+CGG | - | chr4.1:13204562-13204581 | MS.gene53255:CDS | 45.0% | |
| GTATCATCACCATCAGGTTC+AGG | - | chr4.1:13204221-13204240 | MS.gene53255:CDS | 45.0% | |
| TGATCTTGTTCTTCCGGCTA+AGG | - | chr4.1:13204568-13204587 | MS.gene53255:CDS | 45.0% | |
| TGGTGGCAGTCAAGTTAGTA+TGG | - | chr4.1:13204454-13204473 | MS.gene53255:CDS | 45.0% | |
| TTAGGCAACAAACCCTTAGC+TGG | + | chr4.1:13204614-13204633 | None:intergenic | 45.0% | |
| TTGAAGCCTAGCATCATCAC+CGG | + | chr4.1:13204417-13204436 | None:intergenic | 45.0% | |
| TTGGAGAACGCAGAATCTTC+TGG | + | chr4.1:13204266-13204285 | None:intergenic | 45.0% | |
| ! | ATACTAGCTGCGAGTTGAGT+TGG | + | chr4.1:13204205-13204224 | None:intergenic | 45.0% |
| ! | GTTGCTGTTGTTGCTGGTAA+TGG | + | chr4.1:13204008-13204027 | None:intergenic | 45.0% |
| ! | TTTGGAATGGGTTTGGTTGG+TGG | - | chr4.1:13204761-13204780 | MS.gene53255:CDS | 45.0% |
| !! | AGCTAAGGGTTTGTTGCCTA+AGG | - | chr4.1:13204613-13204632 | MS.gene53255:CDS | 45.0% |
| !! | CGATGCTGTTGTTGATGGTA+AGG | + | chr4.1:13203982-13204001 | None:intergenic | 45.0% |
| !! | GGTGATGGAGATGATGTTGT+AGG | + | chr4.1:13203957-13203976 | None:intergenic | 45.0% |
| !! | GTTGGTGTTGTTGGAACAAG+TGG | + | chr4.1:13204059-13204078 | None:intergenic | 45.0% |
| !! | TAGTGATGATGGTGATGGCA+AGG | - | chr4.1:13204682-13204701 | MS.gene53255:CDS | 45.0% |
| !!! | ATGTCAATGGTGGGTCCTTT+TGG | + | chr4.1:13204110-13204129 | None:intergenic | 45.0% |
| !!! | CCTTTTGGGACTGTTATGGT+GGG | + | chr4.1:13204095-13204114 | None:intergenic | 45.0% |
| !!! | TCCTTTTGGGACTGTTATGG+TGG | + | chr4.1:13204096-13204115 | None:intergenic | 45.0% |
| !!! | TGTCAATGGTGGGTCCTTTT+GGG | + | chr4.1:13204109-13204128 | None:intergenic | 45.0% |
| AACAAACCCTTAGCTGGTGC+CGG | + | chr4.1:13204608-13204627 | None:intergenic | 50.0% | |
| CATCACCATCAGGTTCAGGA+GGG | - | chr4.1:13204225-13204244 | MS.gene53255:CDS | 50.0% | |
| CCCACCATAACAGTCCCAAA+AGG | - | chr4.1:13204092-13204111 | MS.gene53255:CDS | 50.0% | |
| GATGTTGTAGGGGGTGGAAT+TGG | + | chr4.1:13203945-13203964 | None:intergenic | 50.0% | |
| GCCGGAAGAACAAGATCAAG+AGG | + | chr4.1:13204566-13204585 | None:intergenic | 50.0% | |
| GCGTTCTCCAAACTCAAAGC+AGG | - | chr4.1:13204275-13204294 | MS.gene53255:CDS | 50.0% | |
| GGCTTGTGTTTGAACAGGGT+TGG | + | chr4.1:13204396-13204415 | None:intergenic | 50.0% | |
| GGGTGGAATTGGTGAGAGTT+GGG | + | chr4.1:13203934-13203953 | None:intergenic | 50.0% | |
| GTCTATCAGTGAGGGAGTTG+AGG | + | chr4.1:13204304-13204323 | None:intergenic | 50.0% | |
| GTTAACCCTCCTGAACCTGA+TGG | + | chr4.1:13204233-13204252 | None:intergenic | 50.0% | |
| TCATCACCATCAGGTTCAGG+AGG | - | chr4.1:13204224-13204243 | MS.gene53255:CDS | 50.0% | |
| TGAGAGTTGGGCTAAAGTGG+TGG | + | chr4.1:13203922-13203941 | None:intergenic | 50.0% | |
| TGGTGAGAGTTGGGCTAAAG+TGG | + | chr4.1:13203925-13203944 | None:intergenic | 50.0% | |
| ! | GAGGAACCCTGCTTTGAGTT+TGG | + | chr4.1:13204285-13204304 | None:intergenic | 50.0% |
| !! | AAGGGTTTGTTGCCTAAGGC+TGG | - | chr4.1:13204617-13204636 | MS.gene53255:CDS | 50.0% |
| !! | AGTGGTGCTGGTAGTGATGA+TGG | - | chr4.1:13204671-13204690 | MS.gene53255:CDS | 50.0% |
| !! | CACCGGCTTGTGTTTGAACA+GGG | + | chr4.1:13204400-13204419 | None:intergenic | 50.0% |
| !! | GCTGGTAGTGATGATGGTGA+TGG | - | chr4.1:13204677-13204696 | MS.gene53255:CDS | 50.0% |
| !! | GCTGTTGTTGATGGTAAGGG+TGG | + | chr4.1:13203978-13203997 | None:intergenic | 50.0% |
| !! | GCTGTTGTTGCTGGTAATGG+TGG | + | chr4.1:13204005-13204024 | None:intergenic | 50.0% |
| !! | GTTGATGGTAAGGGTGGTGA+TGG | + | chr4.1:13203972-13203991 | None:intergenic | 50.0% |
| !! | TCACCGGCTTGTGTTTGAAC+AGG | + | chr4.1:13204401-13204420 | None:intergenic | 50.0% |
| !!! | GGGTCCTTTTGGGACTGTTA+TGG | + | chr4.1:13204099-13204118 | None:intergenic | 50.0% |
| ACAGCAACAGCACCATCACC+AGG | - | chr4.1:13204020-13204039 | MS.gene53255:CDS | 55.0% | |
| GAGTTGGGCTAAAGTGGTGG+AGG | + | chr4.1:13203919-13203938 | None:intergenic | 55.0% | |
| GGAGATGATGTTGTAGGGGG+TGG | + | chr4.1:13203951-13203970 | None:intergenic | 55.0% | |
| GGGGTGGAATTGGTGAGAGT+TGG | + | chr4.1:13203935-13203954 | None:intergenic | 55.0% | |
| GGTGGCGATGCTGTTGTTGA+TGG | + | chr4.1:13203987-13204006 | None:intergenic | 55.0% | |
| TACCCACATCACAGACCCTG+CGG | + | chr4.1:13204729-13204748 | None:intergenic | 55.0% | |
| TCGGTTGTAGACGATGGCAG+TGG | - | chr4.1:13204653-13204672 | MS.gene53255:CDS | 55.0% | |
| TGATGGCAAGGCTTTGCCTG+CGG | - | chr4.1:13204694-13204713 | MS.gene53255:CDS | 55.0% | |
| ! | CACAAGCCGGTGATGATGCT+AGG | - | chr4.1:13204408-13204427 | MS.gene53255:CDS | 55.0% |
| ! | TAAGGCTCCATCTCTGGCTC+CGG | - | chr4.1:13204586-13204605 | MS.gene53255:CDS | 55.0% |
| !! | GGGACTGTTATGGTGGGTGA+TGG | + | chr4.1:13204089-13204108 | None:intergenic | 55.0% |
| !! | GGTGCACCAGTTGGTGTTGT+TGG | + | chr4.1:13204068-13204087 | None:intergenic | 55.0% |
| !! | GGTGCTGTTGCTGTTGTTGC+TGG | + | chr4.1:13204014-13204033 | None:intergenic | 55.0% |
| GCCAGAGATGGAGCCTTAGC+CGG | + | chr4.1:13204584-13204603 | None:intergenic | 60.0% | |
| GTAGACGATGGCAGTGGTGC+TGG | - | chr4.1:13204659-13204678 | MS.gene53255:CDS | 60.0% | |
| TCCGGCTAAGGCTCCATCTC+TGG | - | chr4.1:13204580-13204599 | MS.gene53255:CDS | 60.0% | |
| TGCCGCAGGGTCTGTGATGT+GGG | - | chr4.1:13204724-13204743 | MS.gene53255:CDS | 60.0% | |
| ! | CTGCGGATGTTTCTGCCGCA+GGG | - | chr4.1:13204711-13204730 | MS.gene53255:CDS | 60.0% |
| ! | GTGGGTGATGGTGCACCAGT+TGG | + | chr4.1:13204077-13204096 | None:intergenic | 60.0% |
| CCTGCGGCAGAAACATCCGC+AGG | + | chr4.1:13204713-13204732 | None:intergenic | 65.0% | |
| CTGCCGCAGGGTCTGTGATG+TGG | - | chr4.1:13204723-13204742 | MS.gene53255:CDS | 65.0% | |
| CTGGCTCCGGCACCAGCTAA+GGG | - | chr4.1:13204599-13204618 | MS.gene53255:CDS | 65.0% | |
| ! | CCTGCGGATGTTTCTGCCGC+AGG | - | chr4.1:13204710-13204729 | MS.gene53255:CDS | 65.0% |
| ! | TCTGGCTCCGGCACCAGCTA+AGG | - | chr4.1:13204598-13204617 | MS.gene53255:CDS | 65.0% |
| ! | GCTGGTGCCGGAGCCAGAGA+TGG | + | chr4.1:13204596-13204615 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 13203849 | 13204796 | 13203849 | ID=MS.gene53255 |
| chr4.1 | mRNA | 13203849 | 13204796 | 13203849 | ID=MS.gene53255.t1;Parent=MS.gene53255 |
| chr4.1 | exon | 13203849 | 13204796 | 13203849 | ID=MS.gene53255.t1.exon1;Parent=MS.gene53255.t1 |
| chr4.1 | CDS | 13203849 | 13204796 | 13203849 | ID=cds.MS.gene53255.t1;Parent=MS.gene53255.t1 |
| Gene Sequence |
| Protein sequence |
