Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53258.t1 | XP_003629840.2 | 85.4 | 316 | 45 | 1 | 1 | 315 | 1 | 316 | 1.20E-101 | 379.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53258.t1 | Q8LEJ6 | 52.3 | 174 | 75 | 5 | 87 | 258 | 31 | 198 | 4.8e-38 | 159.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53258.t1 | B7FJN1 | 85.4 | 316 | 45 | 1 | 1 | 315 | 1 | 316 | 8.9e-102 | 379.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056470 | MS.gene53258 | 0.862677 | 4.28E-64 | -1.69E-46 |
| MS.gene058848 | MS.gene53258 | 0.864682 | 1.02E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53258.t1 | MTR_8g087460 | 96.519 | 316 | 10 | 1 | 1 | 315 | 1 | 316 | 0.0 | 588 |
| MS.gene53258.t1 | MTR_8g087470 | 95.886 | 316 | 12 | 1 | 1 | 315 | 1 | 316 | 0.0 | 526 |
| MS.gene53258.t1 | MTR_2g017950 | 61.812 | 309 | 75 | 8 | 15 | 312 | 15 | 291 | 3.03e-108 | 317 |
| MS.gene53258.t1 | MTR_4g059840 | 52.308 | 260 | 94 | 8 | 4 | 256 | 2 | 238 | 6.80e-72 | 224 |
| MS.gene53258.t1 | MTR_4g053380 | 51.504 | 266 | 102 | 9 | 6 | 265 | 6 | 250 | 6.56e-70 | 219 |
| MS.gene53258.t1 | MTR_4g059790 | 52.500 | 240 | 85 | 7 | 23 | 256 | 22 | 238 | 1.15e-67 | 213 |
| MS.gene53258.t1 | MTR_2g093970 | 43.279 | 305 | 142 | 8 | 13 | 312 | 10 | 288 | 9.38e-62 | 198 |
| MS.gene53258.t1 | MTR_2g017970 | 50.435 | 230 | 88 | 7 | 93 | 315 | 68 | 278 | 1.36e-60 | 195 |
| MS.gene53258.t1 | MTR_4g059720 | 50.855 | 234 | 60 | 6 | 13 | 244 | 10 | 190 | 1.96e-60 | 193 |
| MS.gene53258.t1 | MTR_2g017960 | 50.893 | 224 | 93 | 5 | 93 | 315 | 68 | 275 | 2.45e-60 | 194 |
| MS.gene53258.t1 | MTR_2g093980 | 51.754 | 228 | 93 | 7 | 55 | 281 | 42 | 253 | 3.58e-59 | 191 |
| MS.gene53258.t1 | MTR_2g093990 | 56.667 | 180 | 73 | 3 | 66 | 244 | 14 | 189 | 1.56e-57 | 186 |
| MS.gene53258.t1 | MTR_8g087450 | 51.802 | 222 | 93 | 7 | 22 | 242 | 16 | 224 | 7.53e-56 | 183 |
| MS.gene53258.t1 | MTR_4g059780 | 57.426 | 202 | 69 | 8 | 42 | 242 | 52 | 237 | 6.62e-55 | 181 |
| MS.gene53258.t1 | MTR_7g101080 | 50.000 | 158 | 72 | 4 | 87 | 242 | 35 | 187 | 8.46e-44 | 150 |
| MS.gene53258.t1 | MTR_2g090765 | 41.899 | 179 | 94 | 6 | 66 | 242 | 14 | 184 | 1.38e-28 | 110 |
| MS.gene53258.t1 | MTR_5g098060 | 31.395 | 172 | 114 | 2 | 92 | 263 | 47 | 214 | 7.74e-18 | 82.0 |
| MS.gene53258.t1 | MTR_7g075453 | 33.333 | 189 | 105 | 6 | 74 | 256 | 165 | 338 | 1.18e-15 | 77.4 |
| MS.gene53258.t1 | MTR_2g437700 | 31.410 | 156 | 96 | 4 | 92 | 242 | 194 | 343 | 6.37e-14 | 72.4 |
| MS.gene53258.t1 | MTR_5g098420 | 30.978 | 184 | 103 | 7 | 76 | 255 | 188 | 351 | 5.48e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53258.t1 | AT5G03170 | 50.526 | 190 | 83 | 6 | 71 | 258 | 18 | 198 | 7.45e-52 | 171 |
| MS.gene53258.t1 | AT5G60490 | 56.376 | 149 | 59 | 3 | 93 | 239 | 39 | 183 | 7.04e-48 | 161 |
| MS.gene53258.t1 | AT2G20520 | 41.451 | 193 | 103 | 6 | 66 | 255 | 15 | 200 | 1.99e-31 | 118 |
| MS.gene53258.t1 | AT5G44130 | 40.120 | 167 | 93 | 4 | 92 | 255 | 35 | 197 | 5.76e-27 | 106 |
| MS.gene53258.t1 | AT1G03870 | 34.389 | 221 | 124 | 6 | 92 | 310 | 38 | 239 | 4.80e-26 | 103 |
| MS.gene53258.t1 | AT3G46550 | 32.544 | 169 | 103 | 4 | 92 | 255 | 206 | 368 | 6.12e-18 | 84.3 |
| MS.gene53258.t1 | AT3G60900 | 30.000 | 180 | 115 | 3 | 93 | 270 | 190 | 360 | 1.11e-11 | 65.5 |
| MS.gene53258.t1 | AT2G04780 | 30.667 | 150 | 96 | 4 | 92 | 239 | 45 | 188 | 5.04e-11 | 62.4 |
| MS.gene53258.t1 | AT2G04780 | 30.667 | 150 | 96 | 4 | 92 | 239 | 45 | 188 | 5.04e-11 | 62.4 |
Find 93 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTCAATGGTGGGTCCTTT+TGG | 0.235120 | 4.1:+13265138 | None:intergenic |
| GCCTCTTGATCTTGTTCTTC+CGG | 0.272392 | 4.1:-13264683 | MS.gene53258:CDS |
| TAGCAAACTTGCTATTTATC+AGG | 0.275231 | 4.1:-13264722 | MS.gene53258:CDS |
| GGTGCTGTTGCTGTTGTTGC+TGG | 0.314474 | 4.1:+13265234 | None:intergenic |
| CAACTGAACGTCACTACTTA+TGG | 0.325511 | 4.1:-13264811 | MS.gene53258:CDS |
| GTTGCTGTTGTTGCTGGTAA+TGG | 0.333085 | 4.1:+13265240 | None:intergenic |
| GAGGAACCCTGCTTTGAGTT+TGG | 0.336926 | 4.1:+13264963 | None:intergenic |
| CCTGCGGATGTTTCTGCCGC+AGG | 0.350512 | 4.1:-13264535 | MS.gene53258:CDS |
| GGGTGGAATTGGTGAGAGTT+GGG | 0.354472 | 4.1:+13265314 | None:intergenic |
| TTGGAGAACGCAGAATCTTC+TGG | 0.359888 | 4.1:+13264982 | None:intergenic |
| TCACCGGCTTGTGTTTGAAC+AGG | 0.366430 | 4.1:+13264847 | None:intergenic |
| GGGGTGGAATTGGTGAGAGT+TGG | 0.379400 | 4.1:+13265313 | None:intergenic |
| TGCTATTTATCAGGTTGATA+AGG | 0.394299 | 4.1:-13264713 | MS.gene53258:CDS |
| AATTAGAACGGAGAACCTTT+TGG | 0.395304 | 4.1:+13265095 | None:intergenic |
| TTTGGAATGGGTTTGGTTGG+TGG | 0.406116 | 4.1:-13264484 | MS.gene53258:CDS |
| TGGTGGCAGTCAAGTTAGTA+TGG | 0.408478 | 4.1:-13264791 | MS.gene53258:CDS |
| GCAGTTAATGCTACCGTTAC+CGG | 0.409190 | 4.1:-13264760 | MS.gene53258:CDS |
| TGATCTTGTTCTTCCGGCTA+AGG | 0.420269 | 4.1:-13264677 | MS.gene53258:CDS |
| TCCGGCTAAGGCTCCATCTC+TGG | 0.421914 | 4.1:-13264665 | MS.gene53258:CDS |
| TCTGGCTCCGGCACCAGCTA+AGG | 0.426782 | 4.1:-13264647 | MS.gene53258:CDS |
| GGTGCACCAGTTGGTGTTGT+TGG | 0.431617 | 4.1:+13265180 | None:intergenic |
| GGTGATGGAGATGATGTTGT+AGG | 0.435283 | 4.1:+13265291 | None:intergenic |
| TGTTTGAACAGGGTTGGTTA+AGG | 0.439720 | 4.1:+13264858 | None:intergenic |
| GGGACTGTTATGGTGGGTGA+TGG | 0.441052 | 4.1:+13265159 | None:intergenic |
| CATAATCAACATTCTTCAAA+AGG | 0.442515 | 4.1:-13265118 | MS.gene53258:CDS |
| AAGGGTTTGTTGCCTAAGGC+TGG | 0.443081 | 4.1:-13264628 | MS.gene53258:CDS |
| GTATCATCACCATCAGGTTC+AGG | 0.443291 | 4.1:-13265024 | MS.gene53258:CDS |
| CGATGCTGTTGTTGATGGTA+AGG | 0.444048 | 4.1:+13265266 | None:intergenic |
| AAGAATGTTGATTATGTCAA+TGG | 0.455371 | 4.1:+13265125 | None:intergenic |
| GTGATGGAGATGATGTTGTA+GGG | 0.461192 | 4.1:+13265292 | None:intergenic |
| GCGTTCTCCAAACTCAAAGC+AGG | 0.468677 | 4.1:-13264970 | MS.gene53258:CDS |
| AGCTAAGGGTTTGTTGCCTA+AGG | 0.471832 | 4.1:-13264632 | MS.gene53258:CDS |
| CTTGTTCCAACAACACCAAC+TGG | 0.476196 | 4.1:-13265186 | MS.gene53258:CDS |
| TGGTGAGAGTTGGGCTAAAG+TGG | 0.489699 | 4.1:+13265323 | None:intergenic |
| GTCTATCAGTGAGGGAGTTG+AGG | 0.498053 | 4.1:+13264944 | None:intergenic |
| AACAAACCCTTAGCTGGTGC+CGG | 0.498056 | 4.1:+13264640 | None:intergenic |
| CTGCGGATGTTTCTGCCGCA+GGG | 0.500964 | 4.1:-13264534 | MS.gene53258:CDS |
| TTAGGCAACAAACCCTTAGC+TGG | 0.504481 | 4.1:+13264634 | None:intergenic |
| GGCTTGTGTTTGAACAGGGT+TGG | 0.506531 | 4.1:+13264852 | None:intergenic |
| GGTGGCGATGCTGTTGTTGA+TGG | 0.507303 | 4.1:+13265261 | None:intergenic |
| CACCGGCTTGTGTTTGAACA+GGG | 0.508119 | 4.1:+13264848 | None:intergenic |
| GTAGACGATGGCAGTGGTGC+TGG | 0.509847 | 4.1:-13264586 | MS.gene53258:CDS |
| ACATTCTTCAAAAGGCCAAA+AGG | 0.512960 | 4.1:-13265110 | MS.gene53258:CDS |
| CTGCCGCAGGGTCTGTGATG+TGG | 0.514851 | 4.1:-13264522 | MS.gene53258:CDS |
| GCCAGAGATGGAGCCTTAGC+CGG | 0.520251 | 4.1:+13264664 | None:intergenic |
| CAGCTAGTATCATCACCATC+AGG | 0.530331 | 4.1:-13265030 | MS.gene53258:CDS |
| CTGGCTCCGGCACCAGCTAA+GGG | 0.532888 | 4.1:-13264646 | MS.gene53258:CDS |
| TAAGGCTCCATCTCTGGCTC+CGG | 0.533797 | 4.1:-13264659 | MS.gene53258:CDS |
| AGTCAAGTTAGTATGGCTAC+TGG | 0.539108 | 4.1:-13264784 | MS.gene53258:CDS |
| AGTGGAACTGTGCTTAATCC+TGG | 0.544466 | 4.1:+13265207 | None:intergenic |
| TGATGGAGATGATGTTGTAG+GGG | 0.546507 | 4.1:+13265293 | None:intergenic |
| GCTGGTGCCGGAGCCAGAGA+TGG | 0.548351 | 4.1:+13264652 | None:intergenic |
| AGTGGTGCTGGTAGTGATGA+TGG | 0.554877 | 4.1:-13264574 | MS.gene53258:CDS |
| GTTGGTGTTGTTGGAACAAG+TGG | 0.555566 | 4.1:+13265189 | None:intergenic |
| GTTGATGGTAAGGGTGGTGA+TGG | 0.560733 | 4.1:+13265276 | None:intergenic |
| CCCACCATAACAGTCCCAAA+AGG | 0.562203 | 4.1:-13265153 | MS.gene53258:CDS |
| ATAAATAGCAAGTTTGCTAT+CGG | 0.562446 | 4.1:+13264726 | None:intergenic |
| ATACTAGCTGCGAGTTGAGT+TGG | 0.564006 | 4.1:+13265043 | None:intergenic |
| GGTATAAACAGTACCGGTAA+CGG | 0.565166 | 4.1:+13264747 | None:intergenic |
| GTGGGTGATGGTGCACCAGT+TGG | 0.574265 | 4.1:+13265171 | None:intergenic |
| TGCCGCAGGGTCTGTGATGT+GGG | 0.575041 | 4.1:-13264521 | MS.gene53258:CDS |
| AACCCTGTTCAAACACAAGC+CGG | 0.576254 | 4.1:-13264850 | MS.gene53258:CDS |
| AATTGCTAGAAGAAGAAATG+AGG | 0.579432 | 4.1:+13265362 | None:intergenic |
| TGCTAGAAGAAGAAATGAGG+TGG | 0.583738 | 4.1:+13265365 | None:intergenic |
| CACAAGCCGGTGATGATGCT+AGG | 0.584174 | 4.1:-13264837 | MS.gene53258:CDS |
| GATGGAGATGATGTTGTAGG+GGG | 0.584616 | 4.1:+13265294 | None:intergenic |
| GAGTTGGGCTAAAGTGGTGG+AGG | 0.587512 | 4.1:+13265329 | None:intergenic |
| TGAGAGTTGGGCTAAAGTGG+TGG | 0.590350 | 4.1:+13265326 | None:intergenic |
| TCGGTTGTAGACGATGGCAG+TGG | 0.591876 | 4.1:-13264592 | MS.gene53258:CDS |
| ACAGCAACAGCACCATCACC+AGG | 0.599988 | 4.1:-13265225 | MS.gene53258:CDS |
| CGTTCTCCAAACTCAAAGCA+GGG | 0.603196 | 4.1:-13264969 | MS.gene53258:CDS |
| ACTGTGCTTAATCCTGGTGA+TGG | 0.604248 | 4.1:+13265213 | None:intergenic |
| GCTATCGGTATAAACAGTAC+CGG | 0.606873 | 4.1:+13264741 | None:intergenic |
| TCATCACCATCAGGTTCAGG+AGG | 0.610251 | 4.1:-13265021 | MS.gene53258:CDS |
| TTTGAGAAGACGAATTAGAA+CGG | 0.612652 | 4.1:+13265083 | None:intergenic |
| GCCGGAAGAACAAGATCAAG+AGG | 0.613702 | 4.1:+13264682 | None:intergenic |
| AATGTTGATTATGTCAATGG+TGG | 0.616748 | 4.1:+13265128 | None:intergenic |
| GCTGTTGTTGCTGGTAATGG+TGG | 0.619693 | 4.1:+13265243 | None:intergenic |
| TTGAAGCCTAGCATCATCAC+CGG | 0.621788 | 4.1:+13264831 | None:intergenic |
| CTGAACGTCACTACTTATGG+TGG | 0.628986 | 4.1:-13264808 | MS.gene53258:CDS |
| CCTGCGGCAGAAACATCCGC+AGG | 0.629386 | 4.1:+13264535 | None:intergenic |
| AAATCGAAACGAATGAAGCG+AGG | 0.637672 | 4.1:+13264893 | None:intergenic |
| GATGCTGTTGTTGATGGTAA+GGG | 0.638676 | 4.1:+13265267 | None:intergenic |
| AATCGAAACGAATGAAGCGA+GGG | 0.648536 | 4.1:+13264894 | None:intergenic |
| TAGTGATGATGGTGATGGCA+AGG | 0.649260 | 4.1:-13264563 | MS.gene53258:CDS |
| GTTAACCCTCCTGAACCTGA+TGG | 0.664853 | 4.1:+13265015 | None:intergenic |
| AATTCATCGGTTGTAGACGA+TGG | 0.674617 | 4.1:-13264598 | MS.gene53258:CDS |
| GCTGGTAGTGATGATGGTGA+TGG | 0.674633 | 4.1:-13264568 | MS.gene53258:CDS |
| ATGTTGATTATGTCAATGGT+GGG | 0.681774 | 4.1:+13265129 | None:intergenic |
| GCTGTTGTTGATGGTAAGGG+TGG | 0.686845 | 4.1:+13265270 | None:intergenic |
| TACCCACATCACAGACCCTG+CGG | 0.690242 | 4.1:+13264519 | None:intergenic |
| TGATGGCAAGGCTTTGCCTG+CGG | 0.695763 | 4.1:-13264551 | MS.gene53258:CDS |
| CATCACCATCAGGTTCAGGA+GGG | 0.700637 | 4.1:-13265020 | MS.gene53258:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CATAATCAACATTCTTCAAA+AGG | - | chr4.1:13264749-13264768 | MS.gene53258:CDS | 25.0% |
| !! | AAGAATGTTGATTATGTCAA+TGG | + | chr4.1:13264745-13264764 | None:intergenic | 25.0% |
| !!! | ATAAATAGCAAGTTTGCTAT+CGG | + | chr4.1:13265144-13265163 | None:intergenic | 25.0% |
| AATTGCTAGAAGAAGAAATG+AGG | + | chr4.1:13264508-13264527 | None:intergenic | 30.0% | |
| TTTGAGAAGACGAATTAGAA+CGG | + | chr4.1:13264787-13264806 | None:intergenic | 30.0% | |
| ! | AACTTTTTGTCTATCAGTGA+GGG | + | chr4.1:13264934-13264953 | None:intergenic | 30.0% |
| ! | AATGTTGATTATGTCAATGG+TGG | + | chr4.1:13264742-13264761 | None:intergenic | 30.0% |
| ! | ATGTTGATTATGTCAATGGT+GGG | + | chr4.1:13264741-13264760 | None:intergenic | 30.0% |
| !! | TAGCAAACTTGCTATTTATC+AGG | - | chr4.1:13265145-13265164 | MS.gene53258:CDS | 30.0% |
| !! | TGCTATTTATCAGGTTGATA+AGG | - | chr4.1:13265154-13265173 | MS.gene53258:CDS | 30.0% |
| !!! | AAACGTTGTTGTTTTTGGAA+TGG | - | chr4.1:13265370-13265389 | MS.gene53258:CDS | 30.0% |
| !!! | AACGTTGTTGTTTTTGGAAT+GGG | - | chr4.1:13265371-13265390 | MS.gene53258:CDS | 30.0% |
| ACATTCTTCAAAAGGCCAAA+AGG | - | chr4.1:13264757-13264776 | MS.gene53258:CDS | 35.0% | |
| AGAATCTTCTGGTGCAAAAA+TGG | + | chr4.1:13264877-13264896 | None:intergenic | 35.0% | |
| GGCTGGAAAAACTAATTCAT+CGG | - | chr4.1:13265256-13265275 | MS.gene53258:CDS | 35.0% | |
| ! | AATTAGAACGGAGAACCTTT+TGG | + | chr4.1:13264775-13264794 | None:intergenic | 35.0% |
| ! | CAACTTTTTGTCTATCAGTG+AGG | + | chr4.1:13264935-13264954 | None:intergenic | 35.0% |
| !!! | GAATTAGTTTTTCCAGCCTT+AGG | + | chr4.1:13265254-13265273 | None:intergenic | 35.0% |
| !!! | TGGGTAAACGTTGTTGTTTT+TGG | - | chr4.1:13265365-13265384 | MS.gene53258:CDS | 35.0% |
| !!! | TGTTGTTTTTGGAATGGGTT+TGG | - | chr4.1:13265376-13265395 | MS.gene53258:CDS | 35.0% |
| AAATCGAAACGAATGAAGCG+AGG | + | chr4.1:13264977-13264996 | None:intergenic | 40.0% | |
| AATCGAAACGAATGAAGCGA+GGG | + | chr4.1:13264976-13264995 | None:intergenic | 40.0% | |
| AGTCAAGTTAGTATGGCTAC+TGG | - | chr4.1:13265083-13265102 | MS.gene53258:CDS | 40.0% | |
| CAACTGAACGTCACTACTTA+TGG | - | chr4.1:13265056-13265075 | MS.gene53258:CDS | 40.0% | |
| GCTATCGGTATAAACAGTAC+CGG | + | chr4.1:13265129-13265148 | None:intergenic | 40.0% | |
| TGATGGAGATGATGTTGTAG+GGG | + | chr4.1:13264577-13264596 | None:intergenic | 40.0% | |
| TGCTAGAAGAAGAAATGAGG+TGG | + | chr4.1:13264505-13264524 | None:intergenic | 40.0% | |
| ! | AATTCATCGGTTGTAGACGA+TGG | - | chr4.1:13265269-13265288 | MS.gene53258:CDS | 40.0% |
| ! | GTGATGGAGATGATGTTGTA+GGG | + | chr4.1:13264578-13264597 | None:intergenic | 40.0% |
| !! | GATGCTGTTGTTGATGGTAA+GGG | + | chr4.1:13264603-13264622 | None:intergenic | 40.0% |
| !! | GGTATAAACAGTACCGGTAA+CGG | + | chr4.1:13265123-13265142 | None:intergenic | 40.0% |
| !! | TGTTTGAACAGGGTTGGTTA+AGG | + | chr4.1:13265012-13265031 | None:intergenic | 40.0% |
| !!! | GTTTTTGGAATGGGTTTGGT+TGG | - | chr4.1:13265380-13265399 | MS.gene53258:CDS | 40.0% |
| AACCCTGTTCAAACACAAGC+CGG | - | chr4.1:13265017-13265036 | MS.gene53258:CDS | 45.0% | |
| ACTGTGCTTAATCCTGGTGA+TGG | + | chr4.1:13264657-13264676 | None:intergenic | 45.0% | |
| AGTGGAACTGTGCTTAATCC+TGG | + | chr4.1:13264663-13264682 | None:intergenic | 45.0% | |
| CAGCTAGTATCATCACCATC+AGG | - | chr4.1:13264837-13264856 | MS.gene53258:CDS | 45.0% | |
| CGTTCTCCAAACTCAAAGCA+GGG | - | chr4.1:13264898-13264917 | MS.gene53258:CDS | 45.0% | |
| CTGAACGTCACTACTTATGG+TGG | - | chr4.1:13265059-13265078 | MS.gene53258:CDS | 45.0% | |
| CTTGTTCCAACAACACCAAC+TGG | - | chr4.1:13264681-13264700 | MS.gene53258:CDS | 45.0% | |
| GATGGAGATGATGTTGTAGG+GGG | + | chr4.1:13264576-13264595 | None:intergenic | 45.0% | |
| GCAGTTAATGCTACCGTTAC+CGG | - | chr4.1:13265107-13265126 | MS.gene53258:CDS | 45.0% | |
| GCCTCTTGATCTTGTTCTTC+CGG | - | chr4.1:13265184-13265203 | MS.gene53258:CDS | 45.0% | |
| GTATCATCACCATCAGGTTC+AGG | - | chr4.1:13264843-13264862 | MS.gene53258:CDS | 45.0% | |
| TGATCTTGTTCTTCCGGCTA+AGG | - | chr4.1:13265190-13265209 | MS.gene53258:CDS | 45.0% | |
| TGGTGGCAGTCAAGTTAGTA+TGG | - | chr4.1:13265076-13265095 | MS.gene53258:CDS | 45.0% | |
| TTAGGCAACAAACCCTTAGC+TGG | + | chr4.1:13265236-13265255 | None:intergenic | 45.0% | |
| TTGAAGCCTAGCATCATCAC+CGG | + | chr4.1:13265039-13265058 | None:intergenic | 45.0% | |
| TTGGAGAACGCAGAATCTTC+TGG | + | chr4.1:13264888-13264907 | None:intergenic | 45.0% | |
| ! | ATACTAGCTGCGAGTTGAGT+TGG | + | chr4.1:13264827-13264846 | None:intergenic | 45.0% |
| ! | GTTGCTGTTGTTGCTGGTAA+TGG | + | chr4.1:13264630-13264649 | None:intergenic | 45.0% |
| ! | TTTGGAATGGGTTTGGTTGG+TGG | - | chr4.1:13265383-13265402 | MS.gene53258:CDS | 45.0% |
| !! | AGCTAAGGGTTTGTTGCCTA+AGG | - | chr4.1:13265235-13265254 | MS.gene53258:CDS | 45.0% |
| !! | CGATGCTGTTGTTGATGGTA+AGG | + | chr4.1:13264604-13264623 | None:intergenic | 45.0% |
| !! | GGTGATGGAGATGATGTTGT+AGG | + | chr4.1:13264579-13264598 | None:intergenic | 45.0% |
| !! | GTTGGTGTTGTTGGAACAAG+TGG | + | chr4.1:13264681-13264700 | None:intergenic | 45.0% |
| !! | TAGTGATGATGGTGATGGCA+AGG | - | chr4.1:13265304-13265323 | MS.gene53258:CDS | 45.0% |
| !!! | ATGTCAATGGTGGGTCCTTT+TGG | + | chr4.1:13264732-13264751 | None:intergenic | 45.0% |
| !!! | CCTTTTGGGACTGTTATGGT+GGG | + | chr4.1:13264717-13264736 | None:intergenic | 45.0% |
| !!! | TCCTTTTGGGACTGTTATGG+TGG | + | chr4.1:13264718-13264737 | None:intergenic | 45.0% |
| !!! | TGTCAATGGTGGGTCCTTTT+GGG | + | chr4.1:13264731-13264750 | None:intergenic | 45.0% |
| AACAAACCCTTAGCTGGTGC+CGG | + | chr4.1:13265230-13265249 | None:intergenic | 50.0% | |
| CATCACCATCAGGTTCAGGA+GGG | - | chr4.1:13264847-13264866 | MS.gene53258:CDS | 50.0% | |
| CCCACCATAACAGTCCCAAA+AGG | - | chr4.1:13264714-13264733 | MS.gene53258:CDS | 50.0% | |
| GATGTTGTAGGGGGTGGAAT+TGG | + | chr4.1:13264567-13264586 | None:intergenic | 50.0% | |
| GCCGGAAGAACAAGATCAAG+AGG | + | chr4.1:13265188-13265207 | None:intergenic | 50.0% | |
| GCGTTCTCCAAACTCAAAGC+AGG | - | chr4.1:13264897-13264916 | MS.gene53258:CDS | 50.0% | |
| GGCTTGTGTTTGAACAGGGT+TGG | + | chr4.1:13265018-13265037 | None:intergenic | 50.0% | |
| GGGTGGAATTGGTGAGAGTT+GGG | + | chr4.1:13264556-13264575 | None:intergenic | 50.0% | |
| GTCTATCAGTGAGGGAGTTG+AGG | + | chr4.1:13264926-13264945 | None:intergenic | 50.0% | |
| GTTAACCCTCCTGAACCTGA+TGG | + | chr4.1:13264855-13264874 | None:intergenic | 50.0% | |
| TCATCACCATCAGGTTCAGG+AGG | - | chr4.1:13264846-13264865 | MS.gene53258:CDS | 50.0% | |
| TGAGAGTTGGGCTAAAGTGG+TGG | + | chr4.1:13264544-13264563 | None:intergenic | 50.0% | |
| TGGTGAGAGTTGGGCTAAAG+TGG | + | chr4.1:13264547-13264566 | None:intergenic | 50.0% | |
| ! | GAGGAACCCTGCTTTGAGTT+TGG | + | chr4.1:13264907-13264926 | None:intergenic | 50.0% |
| !! | AAGGGTTTGTTGCCTAAGGC+TGG | - | chr4.1:13265239-13265258 | MS.gene53258:CDS | 50.0% |
| !! | AGTGGTGCTGGTAGTGATGA+TGG | - | chr4.1:13265293-13265312 | MS.gene53258:CDS | 50.0% |
| !! | CACCGGCTTGTGTTTGAACA+GGG | + | chr4.1:13265022-13265041 | None:intergenic | 50.0% |
| !! | GCTGGTAGTGATGATGGTGA+TGG | - | chr4.1:13265299-13265318 | MS.gene53258:CDS | 50.0% |
| !! | GCTGTTGTTGATGGTAAGGG+TGG | + | chr4.1:13264600-13264619 | None:intergenic | 50.0% |
| !! | GCTGTTGTTGCTGGTAATGG+TGG | + | chr4.1:13264627-13264646 | None:intergenic | 50.0% |
| !! | GTTGATGGTAAGGGTGGTGA+TGG | + | chr4.1:13264594-13264613 | None:intergenic | 50.0% |
| !! | TCACCGGCTTGTGTTTGAAC+AGG | + | chr4.1:13265023-13265042 | None:intergenic | 50.0% |
| !!! | GGGTCCTTTTGGGACTGTTA+TGG | + | chr4.1:13264721-13264740 | None:intergenic | 50.0% |
| ACAGCAACAGCACCATCACC+AGG | - | chr4.1:13264642-13264661 | MS.gene53258:CDS | 55.0% | |
| GAGTTGGGCTAAAGTGGTGG+AGG | + | chr4.1:13264541-13264560 | None:intergenic | 55.0% | |
| GGAGATGATGTTGTAGGGGG+TGG | + | chr4.1:13264573-13264592 | None:intergenic | 55.0% | |
| GGGGTGGAATTGGTGAGAGT+TGG | + | chr4.1:13264557-13264576 | None:intergenic | 55.0% | |
| GGTGGCGATGCTGTTGTTGA+TGG | + | chr4.1:13264609-13264628 | None:intergenic | 55.0% | |
| TACCCACATCACAGACCCTG+CGG | + | chr4.1:13265351-13265370 | None:intergenic | 55.0% | |
| TCGGTTGTAGACGATGGCAG+TGG | - | chr4.1:13265275-13265294 | MS.gene53258:CDS | 55.0% | |
| TGATGGCAAGGCTTTGCCTG+CGG | - | chr4.1:13265316-13265335 | MS.gene53258:CDS | 55.0% | |
| ! | CACAAGCCGGTGATGATGCT+AGG | - | chr4.1:13265030-13265049 | MS.gene53258:CDS | 55.0% |
| ! | TAAGGCTCCATCTCTGGCTC+CGG | - | chr4.1:13265208-13265227 | MS.gene53258:CDS | 55.0% |
| !! | GGGACTGTTATGGTGGGTGA+TGG | + | chr4.1:13264711-13264730 | None:intergenic | 55.0% |
| !! | GGTGCACCAGTTGGTGTTGT+TGG | + | chr4.1:13264690-13264709 | None:intergenic | 55.0% |
| !! | GGTGCTGTTGCTGTTGTTGC+TGG | + | chr4.1:13264636-13264655 | None:intergenic | 55.0% |
| GCCAGAGATGGAGCCTTAGC+CGG | + | chr4.1:13265206-13265225 | None:intergenic | 60.0% | |
| GTAGACGATGGCAGTGGTGC+TGG | - | chr4.1:13265281-13265300 | MS.gene53258:CDS | 60.0% | |
| TCCGGCTAAGGCTCCATCTC+TGG | - | chr4.1:13265202-13265221 | MS.gene53258:CDS | 60.0% | |
| TGCCGCAGGGTCTGTGATGT+GGG | - | chr4.1:13265346-13265365 | MS.gene53258:CDS | 60.0% | |
| ! | CTGCGGATGTTTCTGCCGCA+GGG | - | chr4.1:13265333-13265352 | MS.gene53258:CDS | 60.0% |
| ! | GTGGGTGATGGTGCACCAGT+TGG | + | chr4.1:13264699-13264718 | None:intergenic | 60.0% |
| CCTGCGGCAGAAACATCCGC+AGG | + | chr4.1:13265335-13265354 | None:intergenic | 65.0% | |
| CTGCCGCAGGGTCTGTGATG+TGG | - | chr4.1:13265345-13265364 | MS.gene53258:CDS | 65.0% | |
| CTGGCTCCGGCACCAGCTAA+GGG | - | chr4.1:13265221-13265240 | MS.gene53258:CDS | 65.0% | |
| ! | CCTGCGGATGTTTCTGCCGC+AGG | - | chr4.1:13265332-13265351 | MS.gene53258:CDS | 65.0% |
| ! | TCTGGCTCCGGCACCAGCTA+AGG | - | chr4.1:13265220-13265239 | MS.gene53258:CDS | 65.0% |
| ! | GCTGGTGCCGGAGCCAGAGA+TGG | + | chr4.1:13265218-13265237 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 13264471 | 13265418 | 13264471 | ID=MS.gene53258 |
| chr4.1 | mRNA | 13264471 | 13265418 | 13264471 | ID=MS.gene53258.t1;Parent=MS.gene53258 |
| chr4.1 | exon | 13264471 | 13265418 | 13264471 | ID=MS.gene53258.t1.exon1;Parent=MS.gene53258.t1 |
| chr4.1 | CDS | 13264471 | 13265418 | 13264471 | ID=cds.MS.gene53258.t1;Parent=MS.gene53258.t1 |
| Gene Sequence |
| Protein sequence |
