Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53731.t1 | GAU29875.1 | 40.3 | 154 | 69 | 4 | 162 | 307 | 114 | 252 | 4.00E-17 | 100.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53731.t1 | A0A2Z6N1K8 | 40.3 | 154 | 69 | 4 | 162 | 307 | 114 | 252 | 2.9e-17 | 100.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05417 | MS.gene53731 | 0.803923 | 2.76E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 132 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTCCTGGTTTGGGGTTA+TGG | 0.168075 | 1.3:+30126357 | None:intergenic |
| TCCATGTTGATTTCTGAAAT+TGG | 0.179315 | 1.3:+30126184 | None:intergenic |
| CTTCGGGGTTCTCCTGGTTT+GGG | 0.179624 | 1.3:+30126350 | None:intergenic |
| ATGATGTCTTTAGTAAAATA+TGG | 0.252979 | 1.3:-30124803 | MS.gene53731:CDS |
| AATTCTAGCTTTGAATGTTT+TGG | 0.262442 | 1.3:-30124837 | MS.gene53731:CDS |
| TATTGAATTTGAAAATATAT+TGG | 0.280808 | 1.3:-30125330 | MS.gene53731:CDS |
| TCTATATGTGTATTCATTTA+CGG | 0.282020 | 1.3:-30125789 | MS.gene53731:CDS |
| GGCTAAGTTCAGTAATAAAT+TGG | 0.288522 | 1.3:-30125123 | MS.gene53731:CDS |
| AAAGGATAATAAAGCATTAA+AGG | 0.291881 | 1.3:-30126530 | MS.gene53731:CDS |
| TCTTCGGGGTTCTCCTGGTT+TGG | 0.294859 | 1.3:+30126349 | None:intergenic |
| AAAATATATTGGGAGATTCT+TGG | 0.310574 | 1.3:-30125319 | MS.gene53731:CDS |
| TGAACTTAGCCATGTAAATA+AGG | 0.313799 | 1.3:+30125135 | None:intergenic |
| AGTGATGAAATTAGTTCTTC+GGG | 0.315927 | 1.3:+30126334 | None:intergenic |
| AGAAGTGAGAATGTGTATTT+AGG | 0.317550 | 1.3:+30125366 | None:intergenic |
| ATTGAATTTGAAAATATATT+GGG | 0.326761 | 1.3:-30125329 | MS.gene53731:CDS |
| TGGTTAGTTGAAAGATGTTA+TGG | 0.329071 | 1.3:-30124885 | MS.gene53731:CDS |
| CTGAAAGGCCTCCCCGTTGC+TGG | 0.330340 | 1.3:+30126464 | None:intergenic |
| GAAAGTTCGTGTACCTGAAT+TGG | 0.341090 | 1.3:-30125672 | MS.gene53731:CDS |
| CTCGAATATCGTCACTTAAT+CGG | 0.366549 | 1.3:-30125853 | MS.gene53731:CDS |
| TAATGTTGACAATCCAATTC+AGG | 0.367806 | 1.3:+30125659 | None:intergenic |
| CAGGGAAACGAAATCAAAAT+AGG | 0.372480 | 1.3:+30125503 | None:intergenic |
| AAGTGATGAAATTAGTTCTT+CGG | 0.375807 | 1.3:+30126333 | None:intergenic |
| CAGTGAGAGCAGCTTGCCTT+GGG | 0.385188 | 1.3:-30125214 | MS.gene53731:CDS |
| TTCTCACTTCTACAATTTGA+AGG | 0.391970 | 1.3:-30125354 | MS.gene53731:CDS |
| TCCTAAATCACCTTCCTTCA+CGG | 0.396668 | 1.3:-30126293 | MS.gene53731:CDS |
| TTGGGAGATTCTTGGTTGAA+TGG | 0.398910 | 1.3:-30125311 | MS.gene53731:CDS |
| GGGTGAAAATCTCCAGCAAC+GGG | 0.403999 | 1.3:-30126476 | MS.gene53731:CDS |
| TACGATCTGCGATTCACAAA+TGG | 0.404077 | 1.3:+30126390 | None:intergenic |
| TTAGTTCTTCGGGGTTCTCC+TGG | 0.404842 | 1.3:+30126344 | None:intergenic |
| TATGCCGGGATTGGAACTTC+GGG | 0.408283 | 1.3:+30125547 | None:intergenic |
| CTCACTTAAGCATTGCAGAT+TGG | 0.408516 | 1.3:+30125940 | None:intergenic |
| ATCTACCCTCCAACTGTTTG+AGG | 0.414096 | 1.3:-30125759 | MS.gene53731:CDS |
| ATCATGTTAGAATTGCAATT+AGG | 0.414683 | 1.3:+30125095 | None:intergenic |
| CACTAATGATATGCCGGGAT+TGG | 0.426894 | 1.3:+30125538 | None:intergenic |
| TTCAATAGATTTAGCTGAAG+TGG | 0.429071 | 1.3:+30126552 | None:intergenic |
| GATTTAGGACGTGGATTTGA+AGG | 0.432174 | 1.3:+30126307 | None:intergenic |
| CCTTGTGTGTGTTTGCTGAA+AGG | 0.433846 | 1.3:+30126449 | None:intergenic |
| CTCTCAAAGTTCAGAACAAA+AGG | 0.437791 | 1.3:-30124679 | MS.gene53731:CDS |
| GGCATGTTTGAGCTCCTTGT+AGG | 0.440156 | 1.3:+30125156 | None:intergenic |
| TCTTCCAACATGGAACATAA+TGG | 0.447454 | 1.3:+30125479 | None:intergenic |
| CTTTCATGAAGTTCAATAAG+TGG | 0.454783 | 1.3:-30124905 | MS.gene53731:CDS |
| GACGATATTCGAGTGACATC+AGG | 0.455837 | 1.3:+30125863 | None:intergenic |
| CGAGTGACATCAGGTGGTTT+CGG | 0.456898 | 1.3:+30125872 | None:intergenic |
| AGTAAAATATGGTTTGCGTT+AGG | 0.459157 | 1.3:-30124792 | MS.gene53731:CDS |
| ACGATCTGCGATTCACAAAT+GGG | 0.460062 | 1.3:+30126391 | None:intergenic |
| CACGAACACTAATGATATGC+CGG | 0.460900 | 1.3:+30125532 | None:intergenic |
| GAAGATGAAGTCAAACTAAA+GGG | 0.463734 | 1.3:-30126496 | MS.gene53731:CDS |
| TTCAGCTAAATCTATTGAAA+AGG | 0.463778 | 1.3:-30126548 | MS.gene53731:CDS |
| ATATGCCGGGATTGGAACTT+CGG | 0.473077 | 1.3:+30125546 | None:intergenic |
| TCATACGATTTGCAACGCTT+TGG | 0.476679 | 1.3:-30126109 | MS.gene53731:CDS |
| AATATGGTTTGCGTTAGGCT+TGG | 0.478809 | 1.3:-30124787 | MS.gene53731:CDS |
| CGAAGTGTCGCATACTTGAT+TGG | 0.479454 | 1.3:-30125730 | MS.gene53731:CDS |
| ACAGTGAGAGCAGCTTGCCT+TGG | 0.480638 | 1.3:-30125215 | MS.gene53731:CDS |
| TGAAGATGAAGTCAAACTAA+AGG | 0.484198 | 1.3:-30126497 | MS.gene53731:CDS |
| ATTGGAAGGCTATCAATAGA+AGG | 0.488671 | 1.3:-30125712 | MS.gene53731:CDS |
| ATCAAGTGATTAGATGAGAA+TGG | 0.490542 | 1.3:+30125905 | None:intergenic |
| TTGTGTTATGTGAGAGGGAT+TGG | 0.491124 | 1.3:+30126074 | None:intergenic |
| GATAGTGAAACCCACACTGC+TGG | 0.492489 | 1.3:-30126161 | MS.gene53731:CDS |
| AAGAGATAATGTCGAATCAC+TGG | 0.493697 | 1.3:-30126603 | None:intergenic |
| AATCATAATGCAAGGGGCAG+AGG | 0.503003 | 1.3:-30124978 | MS.gene53731:CDS |
| TTGTAGGCCAATCTGAGAAA+AGG | 0.503794 | 1.3:+30125172 | None:intergenic |
| GCTGCAATAAAAGTTTCTGT+TGG | 0.504307 | 1.3:-30124756 | MS.gene53731:CDS |
| TTCGGGGTTCTCCTGGTTTG+GGG | 0.505527 | 1.3:+30126351 | None:intergenic |
| TCGGCATTTCCTCAAACAGT+TGG | 0.506349 | 1.3:+30125750 | None:intergenic |
| TCCGTGAAGGAAGGTGATTT+AGG | 0.508260 | 1.3:+30126292 | None:intergenic |
| ACTTAAGCATTGCAGATTGG+AGG | 0.508926 | 1.3:+30125943 | None:intergenic |
| GCATTTCCTCAAACAGTTGG+AGG | 0.509059 | 1.3:+30125753 | None:intergenic |
| GAATGGACTTGAAAGACATA+TGG | 0.509526 | 1.3:-30125294 | MS.gene53731:CDS |
| TTGGAAGAATCTCTATCGGT+TGG | 0.522615 | 1.3:-30125464 | MS.gene53731:CDS |
| CAACATGGAACATAATGGAC+AGG | 0.523859 | 1.3:+30125484 | None:intergenic |
| CTGTCCATTATGTTCCATGT+TGG | 0.526247 | 1.3:-30125483 | MS.gene53731:CDS |
| CGCAGATTGTGTTATGTGAG+AGG | 0.536513 | 1.3:+30126068 | None:intergenic |
| TCAAACATGCCTTATTTACA+TGG | 0.536652 | 1.3:-30125144 | MS.gene53731:CDS |
| GGCTTGATATTACTAGCAAA+AGG | 0.540844 | 1.3:-30124614 | MS.gene53731:intron |
| ATTTGTTTGTCCAGCAGTGT+GGG | 0.544014 | 1.3:+30126151 | None:intergenic |
| TATGACGAGAATGCTTTCGT+TGG | 0.545464 | 1.3:+30126127 | None:intergenic |
| GCAGATTGTGTTATGTGAGA+GGG | 0.545561 | 1.3:+30126069 | None:intergenic |
| AAGGAAGGTGATTTAGGACG+TGG | 0.546445 | 1.3:+30126298 | None:intergenic |
| TAAGTTCAGTAATAAATTGG+AGG | 0.551499 | 1.3:-30125120 | MS.gene53731:CDS |
| AAGATGTTATGGATTCAAGA+TGG | 0.553737 | 1.3:-30124874 | MS.gene53731:CDS |
| CTTAAGCATTGCAGATTGGA+GGG | 0.553779 | 1.3:+30125944 | None:intergenic |
| AGTGTGAATATGATACAGTT+TGG | 0.553966 | 1.3:+30125070 | None:intergenic |
| CGATTTGCAACGCTTTGGCG+AGG | 0.555228 | 1.3:-30126104 | MS.gene53731:CDS |
| TCCGATGTTATGATCCCGGT+GGG | 0.560781 | 1.3:-30126009 | MS.gene53731:CDS |
| ACGAACACTAATGATATGCC+GGG | 0.561155 | 1.3:+30125533 | None:intergenic |
| AGGCTATCAATAGAAGGTAC+AGG | 0.563074 | 1.3:-30125706 | MS.gene53731:CDS |
| AACTGTATCATATTCACACT+TGG | 0.563225 | 1.3:-30125067 | MS.gene53731:CDS |
| GTGTCGCATACTTGATTGGA+AGG | 0.563342 | 1.3:-30125726 | MS.gene53731:CDS |
| AACACACACAAGGAAGTTCA+AGG | 0.566729 | 1.3:-30126439 | MS.gene53731:CDS |
| TGAAATTGGATCTGCATCGT+TGG | 0.569941 | 1.3:+30126198 | None:intergenic |
| CGATAGAGATTCTTCCAACA+TGG | 0.572991 | 1.3:+30125469 | None:intergenic |
| GCATTGCAGATTGGAGGGAG+AGG | 0.578387 | 1.3:+30125949 | None:intergenic |
| GCTTAAAAGCACTGATTGCG+TGG | 0.579029 | 1.3:+30126042 | None:intergenic |
| ATCATGTGGAATAAACATGT+TGG | 0.579460 | 1.3:-30124726 | MS.gene53731:CDS |
| AGTCCCCGAAGTTCCAATCC+CGG | 0.584617 | 1.3:-30125551 | MS.gene53731:CDS |
| CATGTTGGAAGAATCTCTAT+CGG | 0.585309 | 1.3:-30125468 | MS.gene53731:CDS |
| AGGGTGAAAATCTCCAGCAA+CGG | 0.587881 | 1.3:-30126477 | MS.gene53731:CDS |
| TTGTCGTCACAAAACATCAA+AGG | 0.590216 | 1.3:+30126247 | None:intergenic |
| CCCTTGTCAGTTACTACTAG+AGG | 0.592046 | 1.3:-30125830 | MS.gene53731:CDS |
| CAATCAAGTATGCGACACTT+CGG | 0.592087 | 1.3:+30125731 | None:intergenic |
| CATTTCCTCAAACAGTTGGA+GGG | 0.593622 | 1.3:+30125754 | None:intergenic |
| TCAGAACAAAAGGAAGACAT+AGG | 0.598180 | 1.3:-30124669 | MS.gene53731:CDS |
| CAACGCAACTAGAAACCCAC+CGG | 0.598271 | 1.3:+30125994 | None:intergenic |
| CTGTTGGAGTATACATCATG+TGG | 0.598843 | 1.3:-30124740 | MS.gene53731:CDS |
| CACTTATTGAACTTCATGAA+AGG | 0.600194 | 1.3:+30124906 | None:intergenic |
| AGTCTCCGATGTTATGATCC+CGG | 0.603457 | 1.3:-30126013 | MS.gene53731:CDS |
| GAAGATGTATCCGTGAAGGA+AGG | 0.603910 | 1.3:+30126283 | None:intergenic |
| GTGACATCAGGTGGTTTCGG+TGG | 0.606473 | 1.3:+30125875 | None:intergenic |
| TGTTGATCAAATTAACCCCA+AGG | 0.608347 | 1.3:+30125198 | None:intergenic |
| AACATCCATAACCCCAAACC+AGG | 0.610512 | 1.3:-30126362 | MS.gene53731:CDS |
| GGAAGACATAGGAACTGCCA+TGG | 0.610548 | 1.3:-30124658 | MS.gene53731:CDS |
| ACCTCTAGTAGTAACTGACA+AGG | 0.615612 | 1.3:+30125829 | None:intergenic |
| AAAAGAAGATGTATCCGTGA+AGG | 0.615700 | 1.3:+30126279 | None:intergenic |
| AATTTGTTTGTCCAGCAGTG+TGG | 0.617719 | 1.3:+30126150 | None:intergenic |
| TGATTCAAATAAGTTCCTCA+TGG | 0.631429 | 1.3:+30125628 | None:intergenic |
| CTCTCACATAACACAATCTG+CGG | 0.632777 | 1.3:-30126067 | MS.gene53731:CDS |
| ATGCCGGGATTGGAACTTCG+GGG | 0.636758 | 1.3:+30125548 | None:intergenic |
| CTCCGATGTTATGATCCCGG+TGG | 0.637044 | 1.3:-30126010 | MS.gene53731:CDS |
| ACTTAACGAAACTGATTGTG+CGG | 0.637826 | 1.3:+30125580 | None:intergenic |
| TTGGACTGAACAGAACTCCA+TGG | 0.647650 | 1.3:+30124641 | None:intergenic |
| GTGATGAAATTAGTTCTTCG+GGG | 0.651756 | 1.3:+30126335 | None:intergenic |
| CCTTTCAGCAAACACACACA+AGG | 0.653775 | 1.3:-30126449 | MS.gene53731:CDS |
| GATATTCGAGTGACATCAGG+TGG | 0.660765 | 1.3:+30125866 | None:intergenic |
| TCCAATTTCAGAAATCAACA+TGG | 0.662442 | 1.3:-30126185 | MS.gene53731:CDS |
| CAATCTGCAATGCTTAAGTG+AGG | 0.666634 | 1.3:-30125939 | MS.gene53731:CDS |
| ACCCACCGGGATCATAACAT+CGG | 0.674039 | 1.3:+30126008 | None:intergenic |
| AACATGGAACATAATGGACA+GGG | 0.680993 | 1.3:+30125485 | None:intergenic |
| GAAAATCTCCAGCAACGGGG+AGG | 0.682870 | 1.3:-30126472 | MS.gene53731:CDS |
| AGTGAGAGCAGCTTGCCTTG+GGG | 0.691150 | 1.3:-30125213 | MS.gene53731:CDS |
| AACGCAACTAGAAACCCACC+GGG | 0.697472 | 1.3:+30125995 | None:intergenic |
| CCTCTAGTAGTAACTGACAA+GGG | 0.699201 | 1.3:+30125830 | None:intergenic |
| GGTGAAAATCTCCAGCAACG+GGG | 0.776724 | 1.3:-30126475 | MS.gene53731:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAATTTGAAAATATATT+GGG | - | chr1.3:30125777-30125796 | MS.gene53731:CDS | 10.0% |
| !! | TATTGAATTTGAAAATATAT+TGG | - | chr1.3:30125776-30125795 | MS.gene53731:CDS | 10.0% |
| !!! | TTAATTGATTATTTTCTTCA+TGG | - | chr1.3:30126068-30126087 | MS.gene53731:CDS | 15.0% |
| !! | ATGATGTCTTTAGTAAAATA+TGG | - | chr1.3:30126303-30126322 | MS.gene53731:CDS | 20.0% |
| !! | TCTATATGTGTATTCATTTA+CGG | - | chr1.3:30125317-30125336 | MS.gene53731:CDS | 20.0% |
| !!! | AAAGGATAATAAAGCATTAA+AGG | - | chr1.3:30124576-30124595 | MS.gene53731:intron | 20.0% |
| !!! | ACTATTTTAATCATAATGCA+AGG | - | chr1.3:30126120-30126139 | MS.gene53731:CDS | 20.0% |
| !!! | CTATTTTAATCATAATGCAA+GGG | - | chr1.3:30126121-30126140 | MS.gene53731:CDS | 20.0% |
| !!! | TATTTTAATCATAATGCAAG+GGG | - | chr1.3:30126122-30126141 | MS.gene53731:CDS | 20.0% |
| ! | AAAATATATTGGGAGATTCT+TGG | - | chr1.3:30125787-30125806 | MS.gene53731:CDS | 25.0% |
| ! | ATCATGTTAGAATTGCAATT+AGG | + | chr1.3:30126014-30126033 | None:intergenic | 25.0% |
| ! | GAAAATAAATCTTGTCTATG+AGG | - | chr1.3:30126574-30126593 | MS.gene53731:CDS | 25.0% |
| ! | TAAGTTCAGTAATAAATTGG+AGG | - | chr1.3:30125986-30126005 | MS.gene53731:CDS | 25.0% |
| ! | TTCAGCTAAATCTATTGAAA+AGG | - | chr1.3:30124558-30124577 | MS.gene53731:intron | 25.0% |
| !! | AAGTGATGAAATTAGTTCTT+CGG | + | chr1.3:30124776-30124795 | None:intergenic | 25.0% |
| !! | ATATGGATACTTTTGTTGAA+AGG | - | chr1.3:30125829-30125848 | MS.gene53731:CDS | 25.0% |
| !! | TATGGATACTTTTGTTGAAA+GGG | - | chr1.3:30125830-30125849 | MS.gene53731:CDS | 25.0% |
| !!! | AATTCTAGCTTTGAATGTTT+TGG | - | chr1.3:30126269-30126288 | MS.gene53731:CDS | 25.0% |
| !!! | TAGTAATATCAAGCCATTTT+TGG | + | chr1.3:30126487-30126506 | None:intergenic | 25.0% |
| AACTGTATCATATTCACACT+TGG | - | chr1.3:30126039-30126058 | MS.gene53731:CDS | 30.0% | |
| AAGATGTTATGGATTCAAGA+TGG | - | chr1.3:30126232-30126251 | MS.gene53731:CDS | 30.0% | |
| AGAAGTGAGAATGTGTATTT+AGG | + | chr1.3:30125743-30125762 | None:intergenic | 30.0% | |
| AGTGTGAATATGATACAGTT+TGG | + | chr1.3:30126039-30126058 | None:intergenic | 30.0% | |
| ATCAAGTGATTAGATGAGAA+TGG | + | chr1.3:30125204-30125223 | None:intergenic | 30.0% | |
| ATCATGTGGAATAAACATGT+TGG | - | chr1.3:30126380-30126399 | MS.gene53731:CDS | 30.0% | |
| CACTTATTGAACTTCATGAA+AGG | + | chr1.3:30126203-30126222 | None:intergenic | 30.0% | |
| CTTTCATGAAGTTCAATAAG+TGG | - | chr1.3:30126201-30126220 | MS.gene53731:CDS | 30.0% | |
| GAAGATGAAGTCAAACTAAA+GGG | - | chr1.3:30124610-30124629 | MS.gene53731:intron | 30.0% | |
| GGCTAAGTTCAGTAATAAAT+TGG | - | chr1.3:30125983-30126002 | MS.gene53731:CDS | 30.0% | |
| TAATGTTGACAATCCAATTC+AGG | + | chr1.3:30125450-30125469 | None:intergenic | 30.0% | |
| TCCAATTTCAGAAATCAACA+TGG | - | chr1.3:30124921-30124940 | MS.gene53731:CDS | 30.0% | |
| TGAACTTAGCCATGTAAATA+AGG | + | chr1.3:30125974-30125993 | None:intergenic | 30.0% | |
| TGAAGATGAAGTCAAACTAA+AGG | - | chr1.3:30124609-30124628 | MS.gene53731:intron | 30.0% | |
| TGATTCAAATAAGTTCCTCA+TGG | + | chr1.3:30125481-30125500 | None:intergenic | 30.0% | |
| TTCAATAGATTTAGCTGAAG+TGG | + | chr1.3:30124557-30124576 | None:intergenic | 30.0% | |
| TTCTCACTTCTACAATTTGA+AGG | - | chr1.3:30125752-30125771 | MS.gene53731:CDS | 30.0% | |
| ! | AACATTATTTTCTTGCCATG+AGG | - | chr1.3:30125463-30125482 | MS.gene53731:CDS | 30.0% |
| ! | AGTAAAATATGGTTTGCGTT+AGG | - | chr1.3:30126314-30126333 | MS.gene53731:CDS | 30.0% |
| ! | AGTGATGAAATTAGTTCTTC+GGG | + | chr1.3:30124775-30124794 | None:intergenic | 30.0% |
| ! | ATGGATACTTTTGTTGAAAG+GGG | - | chr1.3:30125831-30125850 | MS.gene53731:CDS | 30.0% |
| ! | TGGTTAGTTGAAAGATGTTA+TGG | - | chr1.3:30126221-30126240 | MS.gene53731:CDS | 30.0% |
| ! | TTTTGTTGAAAGGGGAATTT+TGG | - | chr1.3:30125839-30125858 | MS.gene53731:CDS | 30.0% |
| !! | TCAAACATGCCTTATTTACA+TGG | - | chr1.3:30125962-30125981 | MS.gene53731:CDS | 30.0% |
| !! | TCCATGTTGATTTCTGAAAT+TGG | + | chr1.3:30124925-30124944 | None:intergenic | 30.0% |
| !!! | CAAAAGGTATTTTTATGCTG+CGG | - | chr1.3:30126508-30126527 | MS.gene53731:CDS | 30.0% |
| AAAAGAAGATGTATCCGTGA+AGG | + | chr1.3:30124830-30124849 | None:intergenic | 35.0% | |
| ACTTAACGAAACTGATTGTG+CGG | + | chr1.3:30125529-30125548 | None:intergenic | 35.0% | |
| AGTTCTGTTCAGTCCAAAAA+TGG | - | chr1.3:30126471-30126490 | MS.gene53731:CDS | 35.0% | |
| ATTGGAAGGCTATCAATAGA+AGG | - | chr1.3:30125394-30125413 | MS.gene53731:CDS | 35.0% | |
| CAGGGAAACGAAATCAAAAT+AGG | + | chr1.3:30125606-30125625 | None:intergenic | 35.0% | |
| CATGTTGGAAGAATCTCTAT+CGG | - | chr1.3:30125638-30125657 | MS.gene53731:CDS | 35.0% | |
| CTCGAATATCGTCACTTAAT+CGG | - | chr1.3:30125253-30125272 | MS.gene53731:CDS | 35.0% | |
| CTCTCAAAGTTCAGAACAAA+AGG | - | chr1.3:30126427-30126446 | MS.gene53731:CDS | 35.0% | |
| GCTGCAATAAAAGTTTCTGT+TGG | - | chr1.3:30126350-30126369 | MS.gene53731:CDS | 35.0% | |
| GGCTTGATATTACTAGCAAA+AGG | - | chr1.3:30126492-30126511 | MS.gene53731:CDS | 35.0% | |
| TCAGAACAAAAGGAAGACAT+AGG | - | chr1.3:30126437-30126456 | MS.gene53731:CDS | 35.0% | |
| TCTTCCAACATGGAACATAA+TGG | + | chr1.3:30125630-30125649 | None:intergenic | 35.0% | |
| TGTTGATCAAATTAACCCCA+AGG | + | chr1.3:30125911-30125930 | None:intergenic | 35.0% | |
| TTGTCGTCACAAAACATCAA+AGG | + | chr1.3:30124862-30124881 | None:intergenic | 35.0% | |
| TTTCCAATTCTTCAAGCCAA+AGG | + | chr1.3:30126558-30126577 | None:intergenic | 35.0% | |
| ! | AACAAGTCCTTTTCTCAGAT+TGG | - | chr1.3:30125927-30125946 | MS.gene53731:CDS | 35.0% |
| ! | GAATGGACTTGAAAGACATA+TGG | - | chr1.3:30125812-30125831 | MS.gene53731:CDS | 35.0% |
| ! | GTGATGAAATTAGTTCTTCG+GGG | + | chr1.3:30124774-30124793 | None:intergenic | 35.0% |
| !! | AACATGGAACATAATGGACA+GGG | + | chr1.3:30125624-30125643 | None:intergenic | 35.0% |
| !! | CTTTTGTTCTGAACTTTGAG+AGG | + | chr1.3:30126429-30126448 | None:intergenic | 35.0% |
| !!! | AAAGGGGAATTTTGGTTGTT+AGG | - | chr1.3:30125847-30125866 | MS.gene53731:CDS | 35.0% |
| !!! | ATTTTGGTTGTTAGGCATGT+TGG | - | chr1.3:30125855-30125874 | MS.gene53731:CDS | 35.0% |
| AACACACACAAGGAAGTTCA+AGG | - | chr1.3:30124667-30124686 | MS.gene53731:CDS | 40.0% | |
| ACCTCTAGTAGTAACTGACA+AGG | + | chr1.3:30125280-30125299 | None:intergenic | 40.0% | |
| ACGAACACTAATGATATGCC+GGG | + | chr1.3:30125576-30125595 | None:intergenic | 40.0% | |
| ACGATCTGCGATTCACAAAT+GGG | + | chr1.3:30124718-30124737 | None:intergenic | 40.0% | |
| ATTTGTTTGTCCAGCAGTGT+GGG | + | chr1.3:30124958-30124977 | None:intergenic | 40.0% | |
| CAATCAAGTATGCGACACTT+CGG | + | chr1.3:30125378-30125397 | None:intergenic | 40.0% | |
| CAATCTGCAATGCTTAAGTG+AGG | - | chr1.3:30125167-30125186 | MS.gene53731:CDS | 40.0% | |
| CACGAACACTAATGATATGC+CGG | + | chr1.3:30125577-30125596 | None:intergenic | 40.0% | |
| CATTTCCTCAAACAGTTGGA+GGG | + | chr1.3:30125355-30125374 | None:intergenic | 40.0% | |
| CCTCTAGTAGTAACTGACAA+GGG | + | chr1.3:30125279-30125298 | None:intergenic | 40.0% | |
| CGATAGAGATTCTTCCAACA+TGG | + | chr1.3:30125640-30125659 | None:intergenic | 40.0% | |
| CTCTCACATAACACAATCTG+CGG | - | chr1.3:30125039-30125058 | MS.gene53731:CDS | 40.0% | |
| CTGTCCATTATGTTCCATGT+TGG | - | chr1.3:30125623-30125642 | MS.gene53731:CDS | 40.0% | |
| CTGTTGGAGTATACATCATG+TGG | - | chr1.3:30126366-30126385 | MS.gene53731:CDS | 40.0% | |
| GAAAGTTCGTGTACCTGAAT+TGG | - | chr1.3:30125434-30125453 | MS.gene53731:CDS | 40.0% | |
| GCAGATTGTGTTATGTGAGA+GGG | + | chr1.3:30125040-30125059 | None:intergenic | 40.0% | |
| TACGATCTGCGATTCACAAA+TGG | + | chr1.3:30124719-30124738 | None:intergenic | 40.0% | |
| TATGACGAGAATGCTTTCGT+TGG | + | chr1.3:30124982-30125001 | None:intergenic | 40.0% | |
| TCATACGATTTGCAACGCTT+TGG | - | chr1.3:30124997-30125016 | MS.gene53731:CDS | 40.0% | |
| TCCTAAATCACCTTCCTTCA+CGG | - | chr1.3:30124813-30124832 | MS.gene53731:CDS | 40.0% | |
| TCGTTTCTTCTTGCTACCTT+TGG | - | chr1.3:30126539-30126558 | MS.gene53731:CDS | 40.0% | |
| TGAAATTGGATCTGCATCGT+TGG | + | chr1.3:30124911-30124930 | None:intergenic | 40.0% | |
| TTGGAAGAATCTCTATCGGT+TGG | - | chr1.3:30125642-30125661 | MS.gene53731:CDS | 40.0% | |
| TTGGGAGATTCTTGGTTGAA+TGG | - | chr1.3:30125795-30125814 | MS.gene53731:CDS | 40.0% | |
| TTGTAGGCCAATCTGAGAAA+AGG | + | chr1.3:30125937-30125956 | None:intergenic | 40.0% | |
| TTGTGTTATGTGAGAGGGAT+TGG | + | chr1.3:30125035-30125054 | None:intergenic | 40.0% | |
| ! | AATATGGTTTGCGTTAGGCT+TGG | - | chr1.3:30126319-30126338 | MS.gene53731:CDS | 40.0% |
| ! | AATTTGTTTGTCCAGCAGTG+TGG | + | chr1.3:30124959-30124978 | None:intergenic | 40.0% |
| ! | ACTTAAGCATTGCAGATTGG+AGG | + | chr1.3:30125166-30125185 | None:intergenic | 40.0% |
| ! | AGGCTATCAATAGAAGGTAC+AGG | - | chr1.3:30125400-30125419 | MS.gene53731:CDS | 40.0% |
| ! | CTCACTTAAGCATTGCAGAT+TGG | + | chr1.3:30125169-30125188 | None:intergenic | 40.0% |
| ! | CTTAAGCATTGCAGATTGGA+GGG | + | chr1.3:30125165-30125184 | None:intergenic | 40.0% |
| ! | GATTTAGGACGTGGATTTGA+AGG | + | chr1.3:30124802-30124821 | None:intergenic | 40.0% |
| !! | CAACATGGAACATAATGGAC+AGG | + | chr1.3:30125625-30125644 | None:intergenic | 40.0% |
| !! | CTACCTTTGGCTTGAAGAAT+TGG | - | chr1.3:30126552-30126571 | MS.gene53731:CDS | 40.0% |
| !!! | TTTTCTCAGATTGGCCTACA+AGG | - | chr1.3:30125936-30125955 | MS.gene53731:CDS | 40.0% |
| AACATCCATAACCCCAAACC+AGG | - | chr1.3:30124744-30124763 | MS.gene53731:CDS | 45.0% | |
| AATCATAATGCAAGGGGCAG+AGG | - | chr1.3:30126128-30126147 | MS.gene53731:CDS | 45.0% | |
| AGGGTGAAAATCTCCAGCAA+CGG | - | chr1.3:30124629-30124648 | MS.gene53731:CDS | 45.0% | |
| AGTCTCCGATGTTATGATCC+CGG | - | chr1.3:30125093-30125112 | MS.gene53731:CDS | 45.0% | |
| ATATGCCGGGATTGGAACTT+CGG | + | chr1.3:30125563-30125582 | None:intergenic | 45.0% | |
| ATCTACCCTCCAACTGTTTG+AGG | - | chr1.3:30125347-30125366 | MS.gene53731:CDS | 45.0% | |
| CACTAATGATATGCCGGGAT+TGG | + | chr1.3:30125571-30125590 | None:intergenic | 45.0% | |
| CCCTTGTCAGTTACTACTAG+AGG | - | chr1.3:30125276-30125295 | MS.gene53731:CDS | 45.0% | |
| CCTTTCAGCAAACACACACA+AGG | - | chr1.3:30124657-30124676 | MS.gene53731:CDS | 45.0% | |
| CGCAGATTGTGTTATGTGAG+AGG | + | chr1.3:30125041-30125060 | None:intergenic | 45.0% | |
| GAAGATGTATCCGTGAAGGA+AGG | + | chr1.3:30124826-30124845 | None:intergenic | 45.0% | |
| GACGATATTCGAGTGACATC+AGG | + | chr1.3:30125246-30125265 | None:intergenic | 45.0% | |
| GATATTCGAGTGACATCAGG+TGG | + | chr1.3:30125243-30125262 | None:intergenic | 45.0% | |
| GCATTTCCTCAAACAGTTGG+AGG | + | chr1.3:30125356-30125375 | None:intergenic | 45.0% | |
| GTGTCGCATACTTGATTGGA+AGG | - | chr1.3:30125380-30125399 | MS.gene53731:CDS | 45.0% | |
| TCCGTGAAGGAAGGTGATTT+AGG | + | chr1.3:30124817-30124836 | None:intergenic | 45.0% | |
| TCGGCATTTCCTCAAACAGT+TGG | + | chr1.3:30125359-30125378 | None:intergenic | 45.0% | |
| TTGGACTGAACAGAACTCCA+TGG | + | chr1.3:30126468-30126487 | None:intergenic | 45.0% | |
| ! | AAGGAAGGTGATTTAGGACG+TGG | + | chr1.3:30124811-30124830 | None:intergenic | 45.0% |
| ! | CCTTGTGTGTGTTTGCTGAA+AGG | + | chr1.3:30124660-30124679 | None:intergenic | 45.0% |
| ! | GCTGCAGATTTTACGAGAAC+AGG | - | chr1.3:30124531-30124550 | MS.gene53731:intron | 45.0% |
| !! | CGAAGTGTCGCATACTTGAT+TGG | - | chr1.3:30125376-30125395 | MS.gene53731:CDS | 45.0% |
| !! | GCTTAAAAGCACTGATTGCG+TGG | + | chr1.3:30125067-30125086 | None:intergenic | 45.0% |
| AACGCAACTAGAAACCCACC+GGG | + | chr1.3:30125114-30125133 | None:intergenic | 50.0% | |
| ACCCACCGGGATCATAACAT+CGG | + | chr1.3:30125101-30125120 | None:intergenic | 50.0% | |
| CAACGCAACTAGAAACCCAC+CGG | + | chr1.3:30125115-30125134 | None:intergenic | 50.0% | |
| CGAGTGACATCAGGTGGTTT+CGG | + | chr1.3:30125237-30125256 | None:intergenic | 50.0% | |
| GATAGTGAAACCCACACTGC+TGG | - | chr1.3:30124945-30124964 | MS.gene53731:CDS | 50.0% | |
| GGAAGACATAGGAACTGCCA+TGG | - | chr1.3:30126448-30126467 | MS.gene53731:CDS | 50.0% | |
| GGCATGTTTGAGCTCCTTGT+AGG | + | chr1.3:30125953-30125972 | None:intergenic | 50.0% | |
| GGGTGAAAATCTCCAGCAAC+GGG | - | chr1.3:30124630-30124649 | MS.gene53731:CDS | 50.0% | |
| GGTGAAAATCTCCAGCAACG+GGG | - | chr1.3:30124631-30124650 | MS.gene53731:CDS | 50.0% | |
| TATGCCGGGATTGGAACTTC+GGG | + | chr1.3:30125562-30125581 | None:intergenic | 50.0% | |
| TCCGATGTTATGATCCCGGT+GGG | - | chr1.3:30125097-30125116 | MS.gene53731:CDS | 50.0% | |
| ! | TTAGTTCTTCGGGGTTCTCC+TGG | + | chr1.3:30124765-30124784 | None:intergenic | 50.0% |
| !! | GTTCTCCTGGTTTGGGGTTA+TGG | + | chr1.3:30124752-30124771 | None:intergenic | 50.0% |
| ACAGTGAGAGCAGCTTGCCT+TGG | - | chr1.3:30125891-30125910 | MS.gene53731:CDS | 55.0% | |
| AGTCCCCGAAGTTCCAATCC+CGG | - | chr1.3:30125555-30125574 | MS.gene53731:CDS | 55.0% | |
| AGTGAGAGCAGCTTGCCTTG+GGG | - | chr1.3:30125893-30125912 | MS.gene53731:CDS | 55.0% | |
| ATGCCGGGATTGGAACTTCG+GGG | + | chr1.3:30125561-30125580 | None:intergenic | 55.0% | |
| CAGTGAGAGCAGCTTGCCTT+GGG | - | chr1.3:30125892-30125911 | MS.gene53731:CDS | 55.0% | |
| CGATTTGCAACGCTTTGGCG+AGG | - | chr1.3:30125002-30125021 | MS.gene53731:CDS | 55.0% | |
| CTCCGATGTTATGATCCCGG+TGG | - | chr1.3:30125096-30125115 | MS.gene53731:CDS | 55.0% | |
| CTTCGGGGTTCTCCTGGTTT+GGG | + | chr1.3:30124759-30124778 | None:intergenic | 55.0% | |
| GAAAATCTCCAGCAACGGGG+AGG | - | chr1.3:30124634-30124653 | MS.gene53731:CDS | 55.0% | |
| GCATTGCAGATTGGAGGGAG+AGG | + | chr1.3:30125160-30125179 | None:intergenic | 55.0% | |
| GTGACATCAGGTGGTTTCGG+TGG | + | chr1.3:30125234-30125253 | None:intergenic | 55.0% | |
| TCTTCGGGGTTCTCCTGGTT+TGG | + | chr1.3:30124760-30124779 | None:intergenic | 55.0% | |
| ! | TTCGGGGTTCTCCTGGTTTG+GGG | + | chr1.3:30124758-30124777 | None:intergenic | 55.0% |
| CTGAAAGGCCTCCCCGTTGC+TGG | + | chr1.3:30124645-30124664 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 30124511 | 30126617 | 30124511 | ID=MS.gene53731 |
| chr1.3 | mRNA | 30124511 | 30126617 | 30124511 | ID=MS.gene53731.t1;Parent=MS.gene53731 |
| chr1.3 | exon | 30124615 | 30126617 | 30124615 | ID=MS.gene53731.t1.exon1;Parent=MS.gene53731.t1 |
| chr1.3 | CDS | 30124615 | 30126617 | 30124615 | ID=cds.MS.gene53731.t1;Parent=MS.gene53731.t1 |
| chr1.3 | exon | 30124511 | 30124532 | 30124511 | ID=MS.gene53731.t1.exon2;Parent=MS.gene53731.t1 |
| chr1.3 | CDS | 30124511 | 30124532 | 30124511 | ID=cds.MS.gene53731.t1;Parent=MS.gene53731.t1 |
| Gene Sequence |
| Protein sequence |
