Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53777.t1 | XP_013468382.1 | 96 | 176 | 7 | 0 | 1 | 176 | 74 | 249 | 1.50E-85 | 325.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53777.t1 | Q93XY5 | 62.1 | 169 | 55 | 3 | 1 | 167 | 100 | 261 | 1.1e-47 | 191.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53777.t1 | A0A072VK97 | 96.0 | 176 | 7 | 0 | 1 | 176 | 74 | 249 | 1.1e-85 | 325.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059015 | MS.gene53777 | 0.813506 | 2.47E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAGTATTAATAATAATAC+AGG | - | 10955:4889-4908 | MS.gene53777:intron | 10.0% |
| !! | ATAGACTATTATTTATATAA+AGG | - | 10955:3254-3273 | MS.gene53777:intron | 10.0% |
| !! | AAAAAAAAACAATTACAACA+AGG | + | 10955:4020-4039 | MS.gene53777:intergenic | 15.0% |
| !! | ACAATAAAAGATATAATTAG+AGG | - | 10955:5034-5053 | MS.gene53777:intron | 15.0% |
| !! | TATTAATACTATTCTTTACT+AGG | + | 10955:4882-4901 | MS.gene53777:intergenic | 15.0% |
| !!! | ATTACAATCATACTTTTTTT+CGG | - | 10955:3437-3456 | MS.gene53777:intron | 15.0% |
| !!! | TTTATTTTCATATCTTAGTT+TGG | - | 10955:2738-2757 | MS.gene53777:intron | 15.0% |
| !! | AAACTACTATTTGTGTAAAT+AGG | - | 10955:5584-5603 | MS.gene53777:intron | 20.0% |
| !! | AGATTATATGTAATAGCTAT+TGG | - | 10955:3471-3490 | MS.gene53777:intron | 20.0% |
| !! | ATAATCAAGATATATGTAGA+TGG | - | 10955:3125-3144 | MS.gene53777:intron | 20.0% |
| !! | ATTTATATAAAGGACTGATA+AGG | - | 10955:3264-3283 | MS.gene53777:intron | 20.0% |
| !! | TAATCAAGATATATGTAGAT+GGG | - | 10955:3126-3145 | MS.gene53777:intron | 20.0% |
| !!! | AAAAAAAAAGAAGTACTCAA+AGG | + | 10955:4850-4869 | MS.gene53777:intergenic | 20.0% |
| !!! | ATAATTTCATTTTTGCAGTA+CGG | - | 10955:5665-5684 | MS.gene53777:CDS | 20.0% |
| !!! | ATGTTGATTATTACCTTTAT+AGG | - | 10955:3048-3067 | MS.gene53777:intron | 20.0% |
| !!! | TATTTTGTTAAGGTTGAAAT+AGG | - | 10955:3815-3834 | MS.gene53777:intron | 20.0% |
| !!! | TTTTTTTTTTTTTCAACCTC+AGG | - | 10955:4031-4050 | MS.gene53777:intron | 20.0% |
| ! | AAAACAGCTTATAAGTTAGA+AGG | - | 10955:4779-4798 | MS.gene53777:intron | 25.0% |
| ! | ATAGCTATTGGAAATAAAAG+AGG | - | 10955:3483-3502 | MS.gene53777:intron | 25.0% |
| ! | ATTACAACAAGGTATGAAAA+AGG | + | 10955:4009-4028 | MS.gene53777:intergenic | 25.0% |
| ! | CATTATGATTCATAACAGAA+TGG | - | 10955:5478-5497 | MS.gene53777:intron | 25.0% |
| ! | TAGCTATTGGAAATAAAAGA+GGG | - | 10955:3484-3503 | MS.gene53777:intron | 25.0% |
| !! | AGACAAATTAGTTTGAATTG+AGG | - | 10955:3687-3706 | MS.gene53777:intron | 25.0% |
| !! | ATATTTGTAAGTATGGACTA+TGG | - | 10955:3759-3778 | MS.gene53777:intron | 25.0% |
| !! | TTTTACAATATGACTACAAC+CGG | + | 10955:4373-4392 | MS.gene53777:intergenic | 25.0% |
| !!! | AATACAGGCATTTTGTTTTT+TGG | - | 10955:4904-4923 | MS.gene53777:intron | 25.0% |
| !!! | ATACAGGCATTTTGTTTTTT+GGG | - | 10955:4905-4924 | MS.gene53777:intron | 25.0% |
| !!! | CATGTTTTTAAAGAGAGTAT+GGG | + | 10955:2985-3004 | MS.gene53777:intergenic | 25.0% |
| !!! | CTAATTACCATTTTTACTCT+GGG | - | 10955:5330-5349 | MS.gene53777:intron | 25.0% |
| !!! | CTACTCTGTTTATTTTGTTA+AGG | - | 10955:3805-3824 | MS.gene53777:intron | 25.0% |
| !!! | CTTTTGATTTCAAACTTTAC+TGG | - | 10955:3725-3744 | MS.gene53777:intron | 25.0% |
| !!! | GTTAATTTGTGTTGAATACT+TGG | - | 10955:2780-2799 | MS.gene53777:intron | 25.0% |
| !!! | TAGAAGGCATTTTGTTTTTT+GGG | - | 10955:4795-4814 | MS.gene53777:intron | 25.0% |
| !!! | TCTAATTACCATTTTTACTC+TGG | - | 10955:5329-5348 | MS.gene53777:intron | 25.0% |
| !!! | TTAGAAGGCATTTTGTTTTT+TGG | - | 10955:4794-4813 | MS.gene53777:intron | 25.0% |
| !!! | TTTTTTCACATTGGTAATGT+TGG | - | 10955:5638-5657 | MS.gene53777:CDS | 25.0% |
| AATAAAAGAGGGTAAACCAT+CGG | - | 10955:3495-3514 | MS.gene53777:intron | 30.0% | |
| ACTGAATCAATCCAAATGAA+GGG | + | 10955:3663-3682 | MS.gene53777:intergenic | 30.0% | |
| AGGATCACTAAAATAGTCAT+TGG | + | 10955:3540-3559 | MS.gene53777:intergenic | 30.0% | |
| AGTTTGGATAATCTCTTGTT+CGG | - | 10955:2754-2773 | MS.gene53777:intron | 30.0% | |
| ATAAACAGCTTATTAGGCAT+TGG | - | 10955:4823-4842 | MS.gene53777:intron | 30.0% | |
| ATACTACAGTCGTTAGAAAA+GGG | + | 10955:3030-3049 | MS.gene53777:intergenic | 30.0% | |
| ATTACCTTTATAGGATCTTC+CGG | - | 10955:3057-3076 | MS.gene53777:intron | 30.0% | |
| ATTGCAGCTGAGATTATTAA+TGG | - | 10955:2674-2693 | MS.gene53777:intron | 30.0% | |
| GGTTGAATAAACAGCTTATT+AGG | - | 10955:4817-4836 | MS.gene53777:intron | 30.0% | |
| GTCAAGAGTTTGTAAAATAG+AGG | - | 10955:4342-4361 | MS.gene53777:intron | 30.0% | |
| GTCATGTGCATAATCATTAA+TGG | - | 10955:4284-4303 | MS.gene53777:intron | 30.0% | |
| GTGCAACATATTTGTAAGTA+TGG | - | 10955:3752-3771 | MS.gene53777:intron | 30.0% | |
| TAAACAGCTTATTAGGCATT+GGG | - | 10955:4824-4843 | MS.gene53777:intron | 30.0% | |
| TAAGGTTGAAATAGGAAAAC+AGG | - | 10955:3823-3842 | MS.gene53777:intron | 30.0% | |
| TATATAAAGGACTGATAAGG+TGG | - | 10955:3267-3286 | MS.gene53777:intron | 30.0% | |
| TGATCCTTCTTACATATTAG+AGG | - | 10955:3553-3572 | MS.gene53777:intron | 30.0% | |
| TGATTTCAAACTTTACTGGT+TGG | - | 10955:3729-3748 | MS.gene53777:intron | 30.0% | |
| TTTGCAAATCGAAGTTTGAA+TGG | + | 10955:4583-4602 | MS.gene53777:intergenic | 30.0% | |
| ! | AATAAAACTCCGCTTTAAGT+AGG | + | 10955:2720-2739 | MS.gene53777:intergenic | 30.0% |
| ! | CCATACTCTCTTTAAAAACA+TGG | - | 10955:2983-3002 | MS.gene53777:intron | 30.0% |
| ! | GATTTCAAACTTTACTGGTT+GGG | - | 10955:3730-3749 | MS.gene53777:intron | 30.0% |
| ! | GTATACTGGCATTTTCAAAA+AGG | + | 10955:2870-2889 | MS.gene53777:intergenic | 30.0% |
| ! | GTTTTGTATCCTACTTAAAG+CGG | - | 10955:2708-2727 | MS.gene53777:intron | 30.0% |
| ! | TATTGTAAAAGTATGTGCCA+TGG | - | 10955:4383-4402 | MS.gene53777:intron | 30.0% |
| ! | TCAAAACTTTCAAGCTGTTT+TGG | - | 10955:5232-5251 | MS.gene53777:CDS | 30.0% |
| ! | TTGCAATTTTGTCCTTTAGT+AGG | - | 10955:5107-5126 | MS.gene53777:intron | 30.0% |
| !! | CCATGTTTTTAAAGAGAGTA+TGG | + | 10955:2986-3005 | MS.gene53777:intergenic | 30.0% |
| !!! | AAGCTGTTTTTCTGTACATT+GGG | + | 10955:4769-4788 | MS.gene53777:intergenic | 30.0% |
| !!! | ACATTGGTGTTTTTTCACAT+TGG | - | 10955:5629-5648 | MS.gene53777:CDS | 30.0% |
| !!! | AGAAGGCATTTTGTTTTTTG+GGG | - | 10955:4796-4815 | MS.gene53777:intron | 30.0% |
| !!! | ATCATACTTTTTTTCGGTTG+TGG | - | 10955:3443-3462 | MS.gene53777:intron | 30.0% |
| !!! | ATGAATGAAAGGCATTTTCT+GGG | - | 10955:3980-3999 | MS.gene53777:intron | 30.0% |
| !!! | TAAGCTGTTTTTCTGTACAT+TGG | + | 10955:4770-4789 | MS.gene53777:intergenic | 30.0% |
| !!! | TACAGGCATTTTGTTTTTTG+GGG | - | 10955:4906-4925 | MS.gene53777:intron | 30.0% |
| AACGCCTCTAATATGTAAGA+AGG | + | 10955:3560-3579 | None:intergenic | 35.0% | |
| AATTGCACTGCATGAATGAA+AGG | - | 10955:3969-3988 | MS.gene53777:intron | 35.0% | |
| ATCGTAAACAAAACTGTGCT+TGG | - | 10955:4482-4501 | MS.gene53777:intron | 35.0% | |
| ATGACCTAGACCTAATCTAA+AGG | + | 10955:4717-4736 | MS.gene53777:intergenic | 35.0% | |
| ATGAGTGGTCACAAAAAAGT+AGG | + | 10955:3217-3236 | MS.gene53777:intergenic | 35.0% | |
| CAAGATATATGTAGATGGGT+TGG | - | 10955:3130-3149 | MS.gene53777:intron | 35.0% | |
| CACTGAATCAATCCAAATGA+AGG | + | 10955:3664-3683 | MS.gene53777:intergenic | 35.0% | |
| CATACACAATTAAATGTGCC+AGG | + | 10955:3878-3897 | MS.gene53777:intergenic | 35.0% | |
| CATACTACAGTCGTTAGAAA+AGG | + | 10955:3031-3050 | MS.gene53777:intergenic | 35.0% | |
| CCAGACTGATGATTTAATAG+GGG | + | 10955:4161-4180 | MS.gene53777:intergenic | 35.0% | |
| CCAGTATACAGTACTAATCA+CGG | - | 10955:2881-2900 | MS.gene53777:intron | 35.0% | |
| CTGAATCAATCCAAATGAAG+GGG | + | 10955:3662-3681 | MS.gene53777:intergenic | 35.0% | |
| GCCAGACTGATGATTTAATA+GGG | + | 10955:4162-4181 | MS.gene53777:intergenic | 35.0% | |
| GTCAACTATCCCTTTAGATT+AGG | - | 10955:4704-4723 | MS.gene53777:intron | 35.0% | |
| GTTTGAATTGAGGAGATGAT+AGG | - | 10955:3697-3716 | MS.gene53777:intron | 35.0% | |
| TATCCCTTTAGATTAGGTCT+AGG | - | 10955:4710-4729 | MS.gene53777:intron | 35.0% | |
| TCATTGCAATTGATCGTCAA+TGG | - | 10955:2937-2956 | MS.gene53777:intron | 35.0% | |
| TCGTAAACAAAACTGTGCTT+GGG | - | 10955:4483-4502 | MS.gene53777:intron | 35.0% | |
| TGACCTAGACCTAATCTAAA+GGG | + | 10955:4716-4735 | MS.gene53777:intergenic | 35.0% | |
| TTTAGATTAGGTCTAGGTCA+TGG | - | 10955:4716-4735 | MS.gene53777:intron | 35.0% | |
| TTTGCATCCCAGAGTAAAAA+TGG | + | 10955:5340-5359 | MS.gene53777:intergenic | 35.0% | |
| ! | AATTGCTGTTCTTGTAGTTC+AGG | - | 10955:3153-3172 | MS.gene53777:intron | 35.0% |
| ! | TGGCATTTTCAAAAAGGTCA+AGG | + | 10955:2864-2883 | MS.gene53777:intergenic | 35.0% |
| !! | TCAGCTGTTACTTTGTTAGT+AGG | + | 10955:3367-3386 | MS.gene53777:intergenic | 35.0% |
| !! | TTTTAAAGAGAGTATGGGTG+AGG | + | 10955:2980-2999 | MS.gene53777:intergenic | 35.0% |
| !!! | ACTTTTTTGTGACCACTCAT+TGG | - | 10955:3217-3236 | MS.gene53777:intron | 35.0% |
| !!! | CATGAATGAAAGGCATTTTC+TGG | - | 10955:3979-3998 | MS.gene53777:intron | 35.0% |
| AAGGTGGCTTAGTGGTTTAA+GGG | - | 10955:3283-3302 | MS.gene53777:intron | 40.0% | |
| AATGGAGCGAGAACGAATTT+AGG | + | 10955:4565-4584 | MS.gene53777:intergenic | 40.0% | |
| AATTGATCGTCAATGGCAAG+AGG | - | 10955:2944-2963 | MS.gene53777:intron | 40.0% | |
| ACCAATAGAGATAATGCCTG+AGG | + | 10955:4050-4069 | MS.gene53777:intergenic | 40.0% | |
| ACCAATATGAGTGTGTTCTG+CGG | - | 10955:5360-5379 | MS.gene53777:intron | 40.0% | |
| ACCTCAGGCATTATCTCTAT+TGG | - | 10955:4046-4065 | MS.gene53777:intron | 40.0% | |
| ACGAGGAGGAATATGATGTT+AGG | - | 10955:4120-4139 | MS.gene53777:CDS | 40.0% | |
| ATCGTGTTCCGATCTTTCAT+CGG | - | 10955:5139-5158 | MS.gene53777:intron | 40.0% | |
| ATCTATGCTTTCATGGGTGT+GGG | - | 10955:2617-2636 | MS.gene53777:CDS | 40.0% | |
| ATCTCGTGTTTGACTACACT+TGG | - | 10955:5181-5200 | MS.gene53777:CDS | 40.0% | |
| ATGAAAGATCGGAACACGAT+TGG | + | 10955:5139-5158 | MS.gene53777:intergenic | 40.0% | |
| ATGATGTTAGGGGTAGAAGT+CGG | - | 10955:4132-4151 | MS.gene53777:CDS | 40.0% | |
| ATGGAGCGAGAACGAATTTA+GGG | + | 10955:4564-4583 | MS.gene53777:intergenic | 40.0% | |
| CCCCTATTAAATCATCAGTC+TGG | - | 10955:4158-4177 | MS.gene53777:CDS | 40.0% | |
| CCGTGATTAGTACTGTATAC+TGG | + | 10955:2884-2903 | MS.gene53777:intergenic | 40.0% | |
| CGAGGAGGAATATGATGTTA+GGG | - | 10955:4121-4140 | MS.gene53777:CDS | 40.0% | |
| CTAGATGGATGAACTTCGTA+GGG | + | 10955:3620-3639 | MS.gene53777:intergenic | 40.0% | |
| CTTACTCGTTTACCAATGAG+TGG | + | 10955:3232-3251 | MS.gene53777:intergenic | 40.0% | |
| GAAGATTCAGTGTACACTCA+TGG | + | 10955:3596-3615 | MS.gene53777:intergenic | 40.0% | |
| GAGGAGGAATATGATGTTAG+GGG | - | 10955:4122-4141 | MS.gene53777:CDS | 40.0% | |
| GATTGGTAAGCTCCTACTAA+AGG | + | 10955:5122-5141 | MS.gene53777:intergenic | 40.0% | |
| GGCCAGACTGATGATTTAAT+AGG | + | 10955:4163-4182 | MS.gene53777:intergenic | 40.0% | |
| TAAGGTGGCTTAGTGGTTTA+AGG | - | 10955:3282-3301 | MS.gene53777:intron | 40.0% | |
| TCAAACACGAGATTGCAAGT+AGG | + | 10955:5174-5193 | MS.gene53777:intergenic | 40.0% | |
| TCAACCGGAAGATCCTATAA+AGG | + | 10955:3064-3083 | MS.gene53777:intergenic | 40.0% | |
| TCTAGATGGATGAACTTCGT+AGG | + | 10955:3621-3640 | MS.gene53777:intergenic | 40.0% | |
| TTCTGTACATTGGGCCTTAA+GGG | + | 10955:4760-4779 | MS.gene53777:intergenic | 40.0% | |
| TTGTAAAATAGAGGCTGAGC+CGG | - | 10955:4351-4370 | MS.gene53777:intron | 40.0% | |
| TTTCATGGGTGTGGGAATAT+TGG | - | 10955:2625-2644 | MS.gene53777:CDS | 40.0% | |
| TTTCTGTACATTGGGCCTTA+AGG | + | 10955:4761-4780 | MS.gene53777:intergenic | 40.0% | |
| ! | ACTCGTTGGAGTGATAATGA+AGG | - | 10955:3324-3343 | MS.gene53777:intron | 40.0% |
| ! | CTCGTTGGAGTGATAATGAA+GGG | - | 10955:3325-3344 | MS.gene53777:intron | 40.0% |
| ! | TGATCAAGGTCGAGTTTTCT+AGG | - | 10955:4455-4474 | MS.gene53777:intron | 40.0% |
| ! | TTGCAGTACGGATTGAACAA+TGG | - | 10955:5677-5696 | MS.gene53777:CDS | 40.0% |
| !! | GGAGCAAGAAAAGTTCTAGA+TGG | + | 10955:3635-3654 | MS.gene53777:intergenic | 40.0% |
| !! | TTTCTGCTGCCTTTTGCTAT+TGG | - | 10955:3184-3203 | MS.gene53777:intron | 40.0% |
| !!! | AAGAGCAGATTTTGATGACG+AGG | - | 10955:4103-4122 | MS.gene53777:CDS | 40.0% |
| !!! | TGCCTTTTGCTATTGGCATT+TGG | - | 10955:3191-3210 | MS.gene53777:intron | 40.0% |
| ACCGCAGAACACACTCATAT+TGG | + | 10955:5364-5383 | MS.gene53777:intergenic | 45.0% | |
| AGATTGCAAGTAGGACTGGA+AGG | + | 10955:5165-5184 | MS.gene53777:intergenic | 45.0% | |
| AGGTGGCTTAGTGGTTTAAG+GGG | - | 10955:3284-3303 | MS.gene53777:intron | 45.0% | |
| ATCTGAGAAGGATCGCTGTT+CGG | - | 10955:4424-4443 | MS.gene53777:intron | 45.0% | |
| ATTTGACCGGTTGGATCAAC+CGG | + | 10955:3079-3098 | MS.gene53777:intergenic | 45.0% | |
| CAATCCAAATGAAGGGGAGA+GGG | + | 10955:3656-3675 | MS.gene53777:intergenic | 45.0% | |
| CAGAGTCTGCTCGATTACAT+TGG | - | 10955:5613-5632 | MS.gene53777:intron | 45.0% | |
| CATCTATGCTTTCATGGGTG+TGG | - | 10955:2616-2635 | MS.gene53777:CDS | 45.0% | |
| CATGGTTGGAGACAAAGTCT+GGG | - | 10955:4734-4753 | MS.gene53777:intron | 45.0% | |
| CCTAGATTAAACGCTTTGCC+TGG | - | 10955:3857-3876 | MS.gene53777:intron | 45.0% | |
| CGCAATAGACAACACTGAAC+AGG | + | 10955:5427-5446 | MS.gene53777:intergenic | 45.0% | |
| GATTAGGTCTAGGTCATGGT+TGG | - | 10955:4720-4739 | MS.gene53777:intron | 45.0% | |
| GGCCAAATGCCAATAGCAAA+AGG | + | 10955:3196-3215 | MS.gene53777:intergenic | 45.0% | |
| GTCGGGTTTGGGGAAAAAAT+TGG | - | 10955:4518-4537 | MS.gene53777:intron | 45.0% | |
| GTGTGCTGCATTGCTTTCTT+TGG | - | 10955:2647-2666 | MS.gene53777:intron | 45.0% | |
| GTTCGGTCAGTTCATGATCA+AGG | - | 10955:4441-4460 | MS.gene53777:intron | 45.0% | |
| TCAAGCAAAGGCGATATCAG+AGG | - | 10955:4194-4213 | MS.gene53777:CDS | 45.0% | |
| TCAATCCAAATGAAGGGGAG+AGG | + | 10955:3657-3676 | MS.gene53777:intergenic | 45.0% | |
| TCATGGTTGGAGACAAAGTC+TGG | - | 10955:4733-4752 | MS.gene53777:intron | 45.0% | |
| TCGAAGACTCGCAATTTGAC+CGG | + | 10955:3092-3111 | MS.gene53777:intergenic | 45.0% | |
| TGATGTTAGGGGTAGAAGTC+GGG | - | 10955:4133-4152 | MS.gene53777:CDS | 45.0% | |
| TGCTCTTCGAGTAGAAACTG+TGG | + | 10955:4090-4109 | MS.gene53777:intergenic | 45.0% | |
| TGTTCTACTTGAGGCTGCTT+TGG | - | 10955:2908-2927 | MS.gene53777:intron | 45.0% | |
| ! | AGAGAAGGTATGCTACTCTG+AGG | - | 10955:4250-4269 | MS.gene53777:CDS | 45.0% |
| ! | CCAGGCAAAGCGTTTAATCT+AGG | + | 10955:3860-3879 | MS.gene53777:intergenic | 45.0% |
| ! | TCTCTGACGTTTGGAGTTCA+CGG | - | 10955:4222-4241 | MS.gene53777:CDS | 45.0% |
| ! | TGTGCTTGGGTCACTGTTTT+GGG | - | 10955:4496-4515 | MS.gene53777:intron | 45.0% |
| !! | TACTCTGAAGTCTGAACCGA+TGG | + | 10955:3514-3533 | MS.gene53777:intergenic | 45.0% |
| !!! | AGCAGATTTTGATGACGAGG+AGG | - | 10955:4106-4125 | MS.gene53777:CDS | 45.0% |
| AGACAAAGTCTGGGCCCTTA+AGG | - | 10955:4743-4762 | MS.gene53777:intron | 50.0% | |
| AGACTCGCAATTTGACCGGT+TGG | + | 10955:3088-3107 | MS.gene53777:intergenic | 50.0% | |
| ATCAGTCTGGCCAAACAGCT+GGG | - | 10955:4171-4190 | MS.gene53777:CDS | 50.0% | |
| CAAACAGCTGGGTCAAGCAA+AGG | - | 10955:4182-4201 | MS.gene53777:CDS | 50.0% | |
| CACGAGATTGCAAGTAGGAC+TGG | + | 10955:5169-5188 | MS.gene53777:intergenic | 50.0% | |
| CACGGCACTTGTTCTACTTG+AGG | - | 10955:2899-2918 | MS.gene53777:intron | 50.0% | |
| CTGGAAGGCCGATGAAAGAT+CGG | + | 10955:5150-5169 | MS.gene53777:intergenic | 50.0% | |
| CTTTGCTTGACCCAGCTGTT+TGG | + | 10955:4184-4203 | MS.gene53777:intergenic | 50.0% | |
| GAGGAAACCTCTCTGACGTT+TGG | - | 10955:4213-4232 | MS.gene53777:CDS | 50.0% | |
| GAGTTCACGGATGAGAGAGA+AGG | - | 10955:4235-4254 | MS.gene53777:CDS | 50.0% | |
| GATCTTCCGGTTGATCCAAC+CGG | - | 10955:3070-3089 | MS.gene53777:intron | 50.0% | |
| GGACTGATAAGGTGGCTTAG+TGG | - | 10955:3275-3294 | MS.gene53777:intron | 50.0% | |
| GGCTTAGTGGTTTAAGGGGT+CGG | - | 10955:3288-3307 | MS.gene53777:intron | 50.0% | |
| GGTTTAAGGGGTCGGACATA+GGG | - | 10955:3296-3315 | MS.gene53777:intron | 50.0% | |
| GTGAACTCCAAACGTCAGAG+AGG | + | 10955:4223-4242 | MS.gene53777:intergenic | 50.0% | |
| GTTTAAGGGGTCGGACATAG+GGG | - | 10955:3297-3316 | MS.gene53777:intron | 50.0% | |
| TAGTGTGCTGCGATCTGAGA+AGG | - | 10955:4412-4431 | MS.gene53777:intron | 50.0% | |
| TCTCAGATCGCAGCACACTA+CGG | + | 10955:4412-4431 | MS.gene53777:intergenic | 50.0% | |
| TCTGCGGTGTGTCATGGTTA+AGG | - | 10955:5376-5395 | MS.gene53777:CDS | 50.0% | |
| TGGTTTAAGGGGTCGGACAT+AGG | - | 10955:3295-3314 | MS.gene53777:intron | 50.0% | |
| ! | AAGAGGAGATTTTGCGCAGC+AGG | + | 10955:4651-4670 | MS.gene53777:intergenic | 50.0% |
| ! | AGAGGAGATTTTGCGCAGCA+GGG | + | 10955:4650-4669 | MS.gene53777:intergenic | 50.0% |
| ! | CTGTGCTTGGGTCACTGTTT+TGG | - | 10955:4495-4514 | MS.gene53777:intron | 50.0% |
| ! | TCTACTTGAGGCTGCTTTGG+TGG | - | 10955:2911-2930 | MS.gene53777:intron | 50.0% |
| !! | ACTGTTTTGGGTCGGGTTTG+GGG | - | 10955:4508-4527 | MS.gene53777:intron | 50.0% |
| !! | CACTGTTTTGGGTCGGGTTT+GGG | - | 10955:4507-4526 | MS.gene53777:intron | 50.0% |
| !! | CTTGGGTCACTGTTTTGGGT+CGG | - | 10955:4500-4519 | MS.gene53777:intron | 50.0% |
| !! | TCACTGTTTTGGGTCGGGTT+TGG | - | 10955:4506-4525 | MS.gene53777:intron | 50.0% |
| !! | TTGGGTCACTGTTTTGGGTC+GGG | - | 10955:4501-4520 | MS.gene53777:intron | 50.0% |
| CATCAGTCTGGCCAAACAGC+TGG | - | 10955:4170-4189 | MS.gene53777:CDS | 55.0% | |
| CCAGCAGCAAGGAACGAAAG+AGG | + | 10955:4668-4687 | MS.gene53777:intergenic | 55.0% | |
| CCTCACACAAACCAGCAGCA+AGG | + | 10955:4679-4698 | MS.gene53777:intergenic | 55.0% | |
| CCTCTTTCGTTCCTTGCTGC+TGG | - | 10955:4665-4684 | MS.gene53777:intron | 55.0% | |
| GACATAGGGGTTGGACTCGT+TGG | - | 10955:3310-3329 | MS.gene53777:intron | 55.0% | |
| GGGACAGCGTCACAGGTTAA+GGG | + | 10955:4613-4632 | MS.gene53777:intergenic | 55.0% | |
| GTGTGTTCTGCGGTGTGTCA+TGG | - | 10955:5370-5389 | MS.gene53777:intron | 55.0% | |
| TGCTCCCTCTCCCCTTCATT+TGG | - | 10955:3649-3668 | MS.gene53777:intron | 55.0% | |
| !! | CCTTGCTGCTGGTTTGTGTG+AGG | - | 10955:4676-4695 | MS.gene53777:intron | 55.0% |
| !! | TGCTGCTGGTTTGTGTGAGG+CGG | - | 10955:4679-4698 | MS.gene53777:intron | 55.0% |
| AAGGGGTCGGACATAGGGGT+TGG | - | 10955:3301-3320 | MS.gene53777:intron | 60.0% | |
| AGCAGGGACGAAGCGATTGG+GGG | + | 10955:4634-4653 | MS.gene53777:intergenic | 60.0% | |
| CAGCAGGGACGAAGCGATTG+GGG | + | 10955:4635-4654 | MS.gene53777:intergenic | 60.0% | |
| GCAGCAGGGACGAAGCGATT+GGG | + | 10955:4636-4655 | MS.gene53777:intergenic | 60.0% | |
| GGGGACAGCGTCACAGGTTA+AGG | + | 10955:4614-4633 | MS.gene53777:intergenic | 60.0% | |
| !! | TGCTGGTTTGTGTGAGGCGG+CGG | - | 10955:4682-4701 | MS.gene53777:intron | 60.0% |
| CGCAGCAGGGACGAAGCGAT+TGG | + | 10955:4637-4656 | MS.gene53777:intergenic | 65.0% | |
| GATTGGGGGGACAGCGTCAC+AGG | + | 10955:4620-4639 | MS.gene53777:intergenic | 65.0% | |
| GCAGCACACTACGGCAGCCA+TGG | + | 10955:4403-4422 | MS.gene53777:intergenic | 65.0% | |
| GCAGGGACGAAGCGATTGGG+GGG | + | 10955:4633-4652 | MS.gene53777:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 10955 | gene | 2613 | 5724 | 2613 | ID=MS.gene53777 |
| 10955 | mRNA | 2613 | 5724 | 2613 | ID=MS.gene53777.t1;Parent=MS.gene53777 |
| 10955 | exon | 5625 | 5724 | 5625 | ID=MS.gene53777.t1.exon1;Parent=MS.gene53777.t1 |
| 10955 | CDS | 5625 | 5724 | 5625 | ID=cds.MS.gene53777.t1;Parent=MS.gene53777.t1 |
| 10955 | exon | 5372 | 5452 | 5372 | ID=MS.gene53777.t1.exon2;Parent=MS.gene53777.t1 |
| 10955 | CDS | 5372 | 5452 | 5372 | ID=cds.MS.gene53777.t1;Parent=MS.gene53777.t1 |
| 10955 | exon | 5163 | 5267 | 5163 | ID=MS.gene53777.t1.exon3;Parent=MS.gene53777.t1 |
| 10955 | CDS | 5163 | 5267 | 5163 | ID=cds.MS.gene53777.t1;Parent=MS.gene53777.t1 |
| 10955 | exon | 4081 | 4284 | 4081 | ID=MS.gene53777.t1.exon4;Parent=MS.gene53777.t1 |
| 10955 | CDS | 4081 | 4284 | 4081 | ID=cds.MS.gene53777.t1;Parent=MS.gene53777.t1 |
| 10955 | exon | 2613 | 2654 | 2613 | ID=MS.gene53777.t1.exon5;Parent=MS.gene53777.t1 |
| 10955 | CDS | 2613 | 2654 | 2613 | ID=cds.MS.gene53777.t1;Parent=MS.gene53777.t1 |
| Gene Sequence |
| Protein sequence |
