AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene53980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53980.t1 MTR_5g071170 96.216 370 12 1 1 368 22 391 0.0 735
MS.gene53980.t1 MTR_3g464330 75.758 363 88 0 3 365 17 379 0.0 561
MS.gene53980.t1 MTR_7g068780 71.795 351 99 0 12 362 89 439 0.0 555
MS.gene53980.t1 MTR_4g015630 73.219 351 94 0 12 362 83 433 0.0 537
MS.gene53980.t1 MTR_7g068780 69.323 251 77 0 12 262 89 339 5.18e-131 379
MS.gene53980.t1 MTR_1g054035 37.805 328 186 5 9 320 20 345 6.83e-69 221
MS.gene53980.t1 MTR_7g093200 39.024 328 179 8 15 324 75 399 8.15e-68 220
MS.gene53980.t1 MTR_1g111880 36.527 334 181 7 3 321 11 328 4.11e-58 193
MS.gene53980.t1 MTR_4g130980 27.273 319 216 9 8 322 91 397 1.70e-28 115
MS.gene53980.t1 MTR_2g460790 27.123 365 230 12 8 361 92 431 1.59e-26 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53980.t1 AT5G05580 70.986 355 103 0 11 365 79 433 0.0 555
MS.gene53980.t1 AT3G11170 70.308 357 106 0 9 365 84 440 0.0 550
MS.gene53980.t1 AT2G29980 70.704 355 104 0 9 363 22 376 0.0 527
MS.gene53980.t1 AT5G05580 71.667 300 85 0 11 310 79 378 7.10e-168 474
MS.gene53980.t1 AT2G29980 69.685 254 77 0 9 262 22 275 1.37e-126 365
MS.gene53980.t1 AT3G12120 39.077 325 176 10 15 321 25 345 2.52e-68 220
MS.gene53980.t1 AT3G12120 39.077 325 176 10 15 321 25 345 2.52e-68 220
MS.gene53980.t1 AT4G30950 27.273 319 212 8 7 319 91 395 9.29e-27 110

Find 79 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGCATATCCAATTTATT+TGG 0.193747 5.2:-60156674 MS.gene53980:intron
CTCTTCAAGGCACAATGTTT+TGG 0.195045 5.2:-60157363 MS.gene53980:CDS
CTAATATCTGCTATCTTAAA+TGG 0.243193 5.2:+60157526 None:intergenic
AACTTTATGGAGTTCCCTAT+TGG 0.279302 5.2:-60156376 MS.gene53980:CDS
TTCTTCACCCAACAATGTTT+TGG 0.289522 5.2:+60157493 None:intergenic
CACAGTGCCTTTACCATTGT+TGG 0.315201 5.2:-60156692 MS.gene53980:CDS
TGAAAGTAACTTTACCCAAT+AGG 0.348461 5.2:+60156361 None:intergenic
AAGTATTTAATTAGATGAAA+TGG 0.351127 5.2:+60155617 None:intergenic
CCTTGAAGAGGCCAATAAAT+TGG 0.355834 5.2:+60157376 None:intergenic
AAGCTTCTCAGATAGTTCTT+TGG 0.357997 5.2:-60157187 MS.gene53980:CDS
ACTTTATGGAGTTCCCTATT+GGG 0.371967 5.2:-60156375 MS.gene53980:intron
CCAATTTATTGGCCTCTTCA+AGG 0.375978 5.2:-60157376 MS.gene53980:CDS
GGGTGAGAACAAGTCGCTAT+AGG 0.376935 5.2:+60156499 None:intergenic
CTGCTATTCCAAAACATTGT+TGG 0.377085 5.2:-60157501 MS.gene53980:CDS
AGTAGAAGTCCTGGAAAATC+AGG 0.381452 5.2:-60156536 MS.gene53980:CDS
GAATTGAGGAATGCAAAATA+TGG 0.383781 5.2:+60157148 None:intergenic
ACAACCGTTGATCGTGACTA+TGG 0.392892 5.2:-60155936 MS.gene53980:CDS
TGCTATTCCAAAACATTGTT+GGG 0.400992 5.2:-60157500 MS.gene53980:CDS
TTCTTTGGTGAATAACTTTG+TGG 0.401476 5.2:-60157172 MS.gene53980:CDS
GGTGAGAACAAGTCGCTATA+GGG 0.420549 5.2:+60156500 None:intergenic
TGACAGTTTCAACAGTTTGT+TGG 0.426717 5.2:-60156460 MS.gene53980:CDS
GAAAGTAACTTTACCCAATA+GGG 0.437664 5.2:+60156362 None:intergenic
CTTATTCATTGTGCTTCTTG+TGG 0.443124 5.2:+60155519 None:intergenic
CATCCTTCTCAACATTTCCA+TGG 0.444146 5.2:+60156939 None:intergenic
TTCTTGTTCCTTACCATGGA+TGG 0.462110 5.2:-60157128 MS.gene53980:intron
TCAATTCTTGTTCCTTACCA+TGG 0.468411 5.2:-60157132 MS.gene53980:CDS
ATTATCTTAGTTGACAGAAA+AGG 0.475863 5.2:-60156755 MS.gene53980:intron
AAGTGATAATGAGGAATTTG+AGG 0.477418 5.2:+60155858 None:intergenic
CACTAGGGTCAAATTCACTA+TGG 0.482540 5.2:+60157557 None:intergenic
TTAAATGGTGGAGGAGCACT+AGG 0.483704 5.2:+60157541 None:intergenic
TCTTTGGTGAATAACTTTGT+GGG 0.492978 5.2:-60157171 MS.gene53980:CDS
AACTATCTGAGAAGCTTCCA+TGG 0.506224 5.2:+60157193 None:intergenic
GCAGATATTTGTAATGTGGT+TGG 0.508431 5.2:-60156163 MS.gene53980:intron
GGATATGCCAACAATGGTAA+AGG 0.513382 5.2:+60156685 None:intergenic
AGTGATAATGAGGAATTTGA+GGG 0.516886 5.2:+60155859 None:intergenic
TTAATTAGATGAAATGGAAG+TGG 0.519942 5.2:+60155623 None:intergenic
TTTCAGTGGAGTAGAAGTCC+TGG 0.522116 5.2:-60156545 MS.gene53980:intron
ACTATGGTTGTAGCCACCAT+TGG 0.526256 5.2:+60157573 None:intergenic
AACAACATTCACCATGACAT+TGG 0.529424 5.2:-60155906 MS.gene53980:CDS
TTGTGCTTCTTGTGGAGCTG+AGG 0.530462 5.2:+60155527 None:intergenic
GATCACTTTGTTAGTGACAC+TGG 0.533118 5.2:-60155575 MS.gene53980:CDS
TAAAGTTTGAGAATTAAAAG+TGG 0.537680 5.2:+60156392 None:intergenic
CAAAACATTGTGCCTTGAAG+AGG 0.537908 5.2:+60157364 None:intergenic
CTGCAATTCAGTTTGATAGC+GGG 0.538956 5.2:-60157408 MS.gene53980:CDS
TTCACTAACCATCCATGGTA+AGG 0.541367 5.2:+60157120 None:intergenic
TCAAATTCCTCATTATCACT+TGG 0.546390 5.2:-60155856 MS.gene53980:CDS
CCGTTGATCGTGACTATGGT+TGG 0.546535 5.2:-60155932 MS.gene53980:CDS
TAGGAATGGAGTTATCTAAG+AGG 0.552803 5.2:-60155966 MS.gene53980:CDS
TCATTATCACTTGGTTGAAG+CGG 0.556548 5.2:-60155847 MS.gene53980:intron
TCTGCTATCTTAAATGGTGG+AGG 0.559855 5.2:+60157532 None:intergenic
GAAACAATGGTTGTAACCAA+TGG 0.561552 5.2:-60157589 None:intergenic
AAACTTTCACTAACCATCCA+TGG 0.562222 5.2:+60157115 None:intergenic
TGTTGAGAAGGATGAGTCAT+GGG 0.562849 5.2:-60156930 MS.gene53980:CDS
GCTTCAACCAAGTGATAATG+AGG 0.573247 5.2:+60155849 None:intergenic
AAACCATGGAAATGTTGAGA+AGG 0.578515 5.2:-60156942 MS.gene53980:CDS
ATGTTGAGAAGGATGAGTCA+TGG 0.582381 5.2:-60156931 MS.gene53980:CDS
AAGTTATGTTCTTAGAGATG+TGG 0.583661 5.2:-60157455 MS.gene53980:CDS
TTTACCTTGCCACGGTACCA+TGG 0.598110 5.2:+60156096 None:intergenic
AAAACACATCATCAAAACCA+TGG 0.601612 5.2:-60156956 MS.gene53980:CDS
TAAAAGTGGACTAGTTGTGA+AGG 0.605181 5.2:+60156406 None:intergenic
TAAATTGGATATGCCAACAA+TGG 0.608374 5.2:+60156679 None:intergenic
TTATGTTCTTAGAGATGTGG+TGG 0.609151 5.2:-60157452 MS.gene53980:CDS
GAATGGAGTTATCTAAGAGG+TGG 0.609571 5.2:-60155963 MS.gene53980:CDS
AACTGCAGATATTTGTAATG+TGG 0.610353 5.2:-60156167 MS.gene53980:intron
ATATCTGCTATCTTAAATGG+TGG 0.622664 5.2:+60157529 None:intergenic
ACAATGGTTGTAACCAATGG+TGG 0.624372 5.2:-60157586 MS.gene53980:CDS
GTCACATACTTGCATCACCA+CGG 0.626452 5.2:-60156135 MS.gene53980:CDS
ATTACCATGGTACCGTGGCA+AGG 0.629596 5.2:-60156100 MS.gene53980:intron
CCAACCATAGTCACGATCAA+CGG 0.634145 5.2:+60155932 None:intergenic
CAACATGTGTGCCAATGTCA+TGG 0.639198 5.2:+60155895 None:intergenic
TTTGTTTGGAATAGTGGCCA+TGG 0.643837 5.2:-60157210 MS.gene53980:intron
ATGGTAAGGAACAAGAATTG+AGG 0.647599 5.2:+60157134 None:intergenic
GTAGAAGTCCTGGAAAATCA+GGG 0.649940 5.2:-60156535 MS.gene53980:CDS
ATTGTTGGGTGAAGAACACA+TGG 0.660332 5.2:-60157486 MS.gene53980:CDS
GCTGCAATTCAGTTTGATAG+CGG 0.680405 5.2:-60157409 MS.gene53980:CDS
GTAATTTCTGCGTGTAACCG+TGG 0.681596 5.2:+60156118 None:intergenic
CAGAAATTACCATGGTACCG+TGG 0.699527 5.2:-60156105 MS.gene53980:CDS
TAAATGGTGGAGGAGCACTA+GGG 0.705178 5.2:+60157542 None:intergenic
GTTACACGCAGAAATTACCA+TGG 0.746557 5.2:-60156113 MS.gene53980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAATCATTTATAAGA+CGG + chr5.2:60156902-60156921 None:intergenic 10.0%
!! AAGTATTTAATTAGATGAAA+TGG + chr5.2:60157489-60157508 None:intergenic 15.0%
!! ATAAATAATTGATTGATTGA+AGG + chr5.2:60157051-60157070 None:intergenic 15.0%
!! TATAAATGATTATTATATGC+TGG - chr5.2:60156905-60156924 MS.gene53980:intron 15.0%
!!! TTCATTTTTAAATGCATTTT+TGG - chr5.2:60156761-60156780 MS.gene53980:intron 15.0%
!! AAAAAACTCACCAAATAAAT+TGG + chr5.2:60156442-60156461 None:intergenic 20.0%
!! AATTATTTATGTGCGTAATT+AGG - chr5.2:60157061-60157080 MS.gene53980:intron 20.0%
!! TAAAGTTTGAGAATTAAAAG+TGG + chr5.2:60156714-60156733 None:intergenic 20.0%
!! TATGTTAATGTTATGTCATA+TGG - chr5.2:60155836-60155855 MS.gene53980:intron 20.0%
!! TCAATAAATAAATCACATAC+TGG + chr5.2:60156201-60156220 None:intergenic 20.0%
!!! CTTTTAATTCTCAAACTTTA+TGG - chr5.2:60156714-60156733 MS.gene53980:CDS 20.0%
!!! TGTTATTATATGCATAGTTT+TGG - chr5.2:60156246-60156265 MS.gene53980:intron 20.0%
! AGTCTGCATGAATTAAAAAA+AGG + chr5.2:60157406-60157425 None:intergenic 25.0%
! ATTATCTTAGTTGACAGAAA+AGG - chr5.2:60156348-60156367 MS.gene53980:intron 25.0%
! CTAATATCTGCTATCTTAAA+TGG + chr5.2:60155580-60155599 None:intergenic 25.0%
! CTGGTTAAAGAAATAAAAGT+AGG + chr5.2:60157302-60157321 None:intergenic 25.0%
! GTAAAATGTTAATGTTTCAG+TGG - chr5.2:60156544-60156563 MS.gene53980:intron 25.0%
! TTAATTAGATGAAATGGAAG+TGG + chr5.2:60157483-60157502 None:intergenic 25.0%
!! TTTGCTTGAATGAATTTTTC+AGG - chr5.2:60156112-60156131 MS.gene53980:CDS 25.0%
!!! ATTATATTTTTACCTTGCCA+CGG + chr5.2:60157018-60157037 None:intergenic 25.0%
!!! TATTATATGCATAGTTTTGG+TGG - chr5.2:60156249-60156268 MS.gene53980:intron 25.0%
AAAACACATCATCAAAACCA+TGG - chr5.2:60156147-60156166 MS.gene53980:CDS 30.0%
AACTGCAGATATTTGTAATG+TGG - chr5.2:60156936-60156955 MS.gene53980:CDS 30.0%
AAGTTATGTTCTTAGAGATG+TGG - chr5.2:60155648-60155667 MS.gene53980:CDS 30.0%
ATATCTGCTATCTTAAATGG+TGG + chr5.2:60155577-60155596 None:intergenic 30.0%
CGGTAAATTTGGTAGAATTA+CGG + chr5.2:60156867-60156886 None:intergenic 30.0%
GAAAGTAACTTTACCCAATA+GGG + chr5.2:60156744-60156763 None:intergenic 30.0%
GAATTGAGGAATGCAAAATA+TGG + chr5.2:60155958-60155977 None:intergenic 30.0%
GATTACTCATGTGTACAATT+TGG - chr5.2:60157114-60157133 MS.gene53980:intron 30.0%
GTTGGCATATCCAATTTATT+TGG - chr5.2:60156429-60156448 MS.gene53980:CDS 30.0%
TAAATTGGATATGCCAACAA+TGG + chr5.2:60156427-60156446 None:intergenic 30.0%
TATCGAACGTATAAAATGAC+CGG + chr5.2:60157338-60157357 None:intergenic 30.0%
TCAAATTCCTCATTATCACT+TGG - chr5.2:60157247-60157266 MS.gene53980:intron 30.0%
TCTTTGGTGAATAACTTTGT+GGG - chr5.2:60155932-60155951 MS.gene53980:CDS 30.0%
TGAAAGTAACTTTACCCAAT+AGG + chr5.2:60156745-60156764 None:intergenic 30.0%
TGCTATTCCAAAACATTGTT+GGG - chr5.2:60155603-60155622 MS.gene53980:CDS 30.0%
TTCTTTGGTGAATAACTTTG+TGG - chr5.2:60155931-60155950 MS.gene53980:CDS 30.0%
! AAAGCAGCAAAACCAATTTT+TGG - chr5.2:60157426-60157445 MS.gene53980:CDS 30.0%
! AAGTGATAATGAGGAATTTG+AGG + chr5.2:60157248-60157267 None:intergenic 30.0%
! AGTGATAATGAGGAATTTGA+GGG + chr5.2:60157247-60157266 None:intergenic 30.0%
! TCAAAGTAAAGTTTTACCCA+TGG + chr5.2:60156069-60156088 None:intergenic 30.0%
! TTTTGGGCAATTTTTGTTCT+TGG - chr5.2:60155757-60155776 MS.gene53980:intron 30.0%
! TTTTTGTTCTTGGACATGAT+TGG - chr5.2:60155767-60155786 MS.gene53980:intron 30.0%
!!! GGTATTTTTGGCCAATTTAT+TGG - chr5.2:60155716-60155735 MS.gene53980:intron 30.0%
!!! TGATGTTTTGTTTGGAATAG+TGG - chr5.2:60155887-60155906 MS.gene53980:CDS 30.0%
AAACCATGGAAATGTTGAGA+AGG - chr5.2:60156161-60156180 MS.gene53980:CDS 35.0%
AAACTTTCACTAACCATCCA+TGG + chr5.2:60155991-60156010 None:intergenic 35.0%
AACAACATTCACCATGACAT+TGG - chr5.2:60157197-60157216 MS.gene53980:CDS 35.0%
AACTTTATGGAGTTCCCTAT+TGG - chr5.2:60156727-60156746 MS.gene53980:CDS 35.0%
AAGCTTCTCAGATAGTTCTT+TGG - chr5.2:60155916-60155935 MS.gene53980:CDS 35.0%
ACTCATGTGTACAATTTGGT+AGG - chr5.2:60157118-60157137 MS.gene53980:intron 35.0%
ACTTTATGGAGTTCCCTATT+GGG - chr5.2:60156728-60156747 MS.gene53980:CDS 35.0%
ATCAGACTCAACAAGATTTG+AGG + chr5.2:60157097-60157116 None:intergenic 35.0%
ATGGTAAGGAACAAGAATTG+AGG + chr5.2:60155972-60155991 None:intergenic 35.0%
ATTTCTTTAACCAGTGTCTC+AGG - chr5.2:60157308-60157327 MS.gene53980:intron 35.0%
CGGTAATAGTCTCCAAAAAT+TGG + chr5.2:60157441-60157460 None:intergenic 35.0%
CTGCTATTCCAAAACATTGT+TGG - chr5.2:60155602-60155621 MS.gene53980:CDS 35.0%
GCAGATATTTGTAATGTGGT+TGG - chr5.2:60156940-60156959 MS.gene53980:CDS 35.0%
GTTGAAGCGGTAATTACTTA+CGG - chr5.2:60157269-60157288 MS.gene53980:intron 35.0%
TAGGAATGGAGTTATCTAAG+AGG - chr5.2:60157137-60157156 MS.gene53980:CDS 35.0%
TCAATTCTTGTTCCTTACCA+TGG - chr5.2:60155971-60155990 MS.gene53980:intron 35.0%
TCATTATCACTTGGTTGAAG+CGG - chr5.2:60157256-60157275 MS.gene53980:intron 35.0%
TGACAGTTTCAACAGTTTGT+TGG - chr5.2:60156643-60156662 MS.gene53980:intron 35.0%
TGTGTACAATTTGGTAGGAA+TGG - chr5.2:60157123-60157142 MS.gene53980:intron 35.0%
TTACCCATGGAACAAAAACA+TGG + chr5.2:60156056-60156075 None:intergenic 35.0%
TTATGTTCTTAGAGATGTGG+TGG - chr5.2:60155651-60155670 MS.gene53980:CDS 35.0%
TTGAAGCGGTAATTACTTAC+GGG - chr5.2:60157270-60157289 MS.gene53980:intron 35.0%
TTTCTTTAACCAGTGTCTCA+GGG - chr5.2:60157309-60157328 MS.gene53980:intron 35.0%
TTTGGTAGAATTACGGTGAA+AGG + chr5.2:60156860-60156879 None:intergenic 35.0%
! GTCACTTCTTTTCTCTCATT+GGG + chr5.2:60156627-60156646 None:intergenic 35.0%
! GTGTCGATAAACGGTAAATT+TGG + chr5.2:60156878-60156897 None:intergenic 35.0%
! TCTTCAAGGCACAATGTTTT+GGG - chr5.2:60155741-60155760 MS.gene53980:intron 35.0%
! TTCTTCACCCAACAATGTTT+TGG + chr5.2:60155613-60155632 None:intergenic 35.0%
!! GCGAACATTGATGTTTTGTT+TGG - chr5.2:60155879-60155898 MS.gene53980:CDS 35.0%
!! TAAAAGTGGACTAGTTGTGA+AGG + chr5.2:60156700-60156719 None:intergenic 35.0%
!! TGTCACTTCTTTTCTCTCAT+TGG + chr5.2:60156628-60156647 None:intergenic 35.0%
!! TGTCCATGTTTTTGTTCCAT+GGG - chr5.2:60156050-60156069 MS.gene53980:intron 35.0%
!! TTGTCCATGTTTTTGTTCCA+TGG - chr5.2:60156049-60156068 MS.gene53980:intron 35.0%
!!! AGTTTGATAGCGGGTATTTT+TGG - chr5.2:60155704-60155723 MS.gene53980:intron 35.0%
AACTATCTGAGAAGCTTCCA+TGG + chr5.2:60155913-60155932 None:intergenic 40.0%
ACTTCATTGTTCCCCTTTGT+TGG + chr5.2:60156282-60156301 None:intergenic 40.0%
AGTAGAAGTCCTGGAAAATC+AGG - chr5.2:60156567-60156586 MS.gene53980:intron 40.0%
ATGTTGAGAAGGATGAGTCA+TGG - chr5.2:60156172-60156191 MS.gene53980:intron 40.0%
ATTGTTGGGTGAAGAACACA+TGG - chr5.2:60155617-60155636 MS.gene53980:CDS 40.0%
CAAAACATTGTGCCTTGAAG+AGG + chr5.2:60155742-60155761 None:intergenic 40.0%
CACTAGGGTCAAATTCACTA+TGG + chr5.2:60155549-60155568 None:intergenic 40.0%
CATCCTTCTCAACATTTCCA+TGG + chr5.2:60156167-60156186 None:intergenic 40.0%
CCTTGAAGAGGCCAATAAAT+TGG + chr5.2:60155730-60155749 None:intergenic 40.0%
CTTCATTGTTCCCCTTTGTT+GGG + chr5.2:60156281-60156300 None:intergenic 40.0%
GAATGGAGTTATCTAAGAGG+TGG - chr5.2:60157140-60157159 MS.gene53980:CDS 40.0%
GATCACTTTGTTAGTGACAC+TGG - chr5.2:60157528-60157547 MS.gene53980:CDS 40.0%
GCTGCAATTCAGTTTGATAG+CGG - chr5.2:60155694-60155713 MS.gene53980:intron 40.0%
GGATATGCCAACAATGGTAA+AGG + chr5.2:60156421-60156440 None:intergenic 40.0%
GTAGAAGTCCTGGAAAATCA+GGG - chr5.2:60156568-60156587 MS.gene53980:intron 40.0%
GTTACACGCAGAAATTACCA+TGG - chr5.2:60156990-60157009 MS.gene53980:intron 40.0%
TCTGCTATCTTAAATGGTGG+AGG + chr5.2:60155574-60155593 None:intergenic 40.0%
TGTTGAGAAGGATGAGTCAT+GGG - chr5.2:60156173-60156192 MS.gene53980:intron 40.0%
TTCACTAACCATCCATGGTA+AGG + chr5.2:60155986-60156005 None:intergenic 40.0%
TTCTTGTTCCTTACCATGGA+TGG - chr5.2:60155975-60155994 MS.gene53980:intron 40.0%
! CCAATTTATTGGCCTCTTCA+AGG - chr5.2:60155727-60155746 MS.gene53980:intron 40.0%
! CTCTTCAAGGCACAATGTTT+TGG - chr5.2:60155740-60155759 MS.gene53980:intron 40.0%
! CTGCAATTCAGTTTGATAGC+GGG - chr5.2:60155695-60155714 MS.gene53980:intron 40.0%
! GCTTCAACCAAGTGATAATG+AGG + chr5.2:60157257-60157276 None:intergenic 40.0%
! TAAGACGGTGTGTCGATAAA+CGG + chr5.2:60156887-60156906 None:intergenic 40.0%
! TTTGTTTGGAATAGTGGCCA+TGG - chr5.2:60155893-60155912 MS.gene53980:CDS 40.0%
!! GGAAGTGGTGATGATTTTTC+TGG + chr5.2:60157468-60157487 None:intergenic 40.0%
!!! GTGATGATTTTTCTGGCTCA+CGG + chr5.2:60157461-60157480 None:intergenic 40.0%
ACAACCGTTGATCGTGACTA+TGG - chr5.2:60157167-60157186 MS.gene53980:CDS 45.0%
ACTATGGTTGTAGCCACCAT+TGG + chr5.2:60155533-60155552 None:intergenic 45.0%
CAACATGTGTGCCAATGTCA+TGG + chr5.2:60157211-60157230 None:intergenic 45.0%
CACAGTGCCTTTACCATTGT+TGG - chr5.2:60156411-60156430 MS.gene53980:CDS 45.0%
CAGAAATTACCATGGTACCG+TGG - chr5.2:60156998-60157017 MS.gene53980:intron 45.0%
CCAACCATAGTCACGATCAA+CGG + chr5.2:60157174-60157193 None:intergenic 45.0%
GGTGAGAACAAGTCGCTATA+GGG + chr5.2:60156606-60156625 None:intergenic 45.0%
GGTGGTTTAGTCCCAACAAA+GGG - chr5.2:60156267-60156286 MS.gene53980:intron 45.0%
GTAATTTCTGCGTGTAACCG+TGG + chr5.2:60156988-60157007 None:intergenic 45.0%
GTCACATACTTGCATCACCA+CGG - chr5.2:60156968-60156987 MS.gene53980:CDS 45.0%
GTGGTTTAGTCCCAACAAAG+GGG - chr5.2:60156268-60156287 MS.gene53980:intron 45.0%
TGGTGGTTTAGTCCCAACAA+AGG - chr5.2:60156266-60156285 MS.gene53980:intron 45.0%
TTTCAGTGGAGTAGAAGTCC+TGG - chr5.2:60156558-60156577 MS.gene53980:intron 45.0%
! AAGTGTGACCCTGATTTTCC+AGG + chr5.2:60156579-60156598 None:intergenic 45.0%
!! TAAATGGTGGAGGAGCACTA+GGG + chr5.2:60155564-60155583 None:intergenic 45.0%
!! TTAAATGGTGGAGGAGCACT+AGG + chr5.2:60155565-60155584 None:intergenic 45.0%
ATTACCATGGTACCGTGGCA+AGG - chr5.2:60157003-60157022 MS.gene53980:intron 50.0%
CCGTTGATCGTGACTATGGT+TGG - chr5.2:60157171-60157190 MS.gene53980:CDS 50.0%
GGGTGAGAACAAGTCGCTAT+AGG + chr5.2:60156607-60156626 None:intergenic 50.0%
TTGTGCTTCTTGTGGAGCTG+AGG + chr5.2:60157579-60157598 None:intergenic 50.0%
TTTACCTTGCCACGGTACCA+TGG + chr5.2:60157010-60157029 None:intergenic 50.0%
AACCAGTGTCTCAGGGTCAC+CGG - chr5.2:60157316-60157335 MS.gene53980:intron 55.0%
GACCGGTGACCCTGAGACAC+TGG + chr5.2:60157321-60157340 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 60155520 60157605 60155520 ID=MS.gene53980
chr5.2 mRNA 60155520 60157605 60155520 ID=MS.gene53980.t1;Parent=MS.gene53980
chr5.2 exon 60157337 60157605 60157337 ID=MS.gene53980.t1.exon1;Parent=MS.gene53980.t1
chr5.2 CDS 60157337 60157605 60157337 ID=cds.MS.gene53980.t1;Parent=MS.gene53980.t1
chr5.2 exon 60157129 60157218 60157129 ID=MS.gene53980.t1.exon2;Parent=MS.gene53980.t1
chr5.2 CDS 60157129 60157218 60157129 ID=cds.MS.gene53980.t1;Parent=MS.gene53980.t1
chr5.2 exon 60156925 60156991 60156925 ID=MS.gene53980.t1.exon3;Parent=MS.gene53980.t1
chr5.2 CDS 60156925 60156991 60156925 ID=cds.MS.gene53980.t1;Parent=MS.gene53980.t1
chr5.2 exon 60156675 60156767 60156675 ID=MS.gene53980.t1.exon4;Parent=MS.gene53980.t1
chr5.2 CDS 60156675 60156767 60156675 ID=cds.MS.gene53980.t1;Parent=MS.gene53980.t1
chr5.2 exon 60156376 60156561 60156376 ID=MS.gene53980.t1.exon5;Parent=MS.gene53980.t1
chr5.2 CDS 60156376 60156561 60156376 ID=cds.MS.gene53980.t1;Parent=MS.gene53980.t1
chr5.2 exon 60156101 60156181 60156101 ID=MS.gene53980.t1.exon6;Parent=MS.gene53980.t1
chr5.2 CDS 60156101 60156181 60156101 ID=cds.MS.gene53980.t1;Parent=MS.gene53980.t1
chr5.2 exon 60155848 60155985 60155848 ID=MS.gene53980.t1.exon7;Parent=MS.gene53980.t1
chr5.2 CDS 60155848 60155985 60155848 ID=cds.MS.gene53980.t1;Parent=MS.gene53980.t1
chr5.2 exon 60155520 60155702 60155520 ID=MS.gene53980.t1.exon8;Parent=MS.gene53980.t1
chr5.2 CDS 60155520 60155702 60155520 ID=cds.MS.gene53980.t1;Parent=MS.gene53980.t1
Gene Sequence

>MS.gene53980

ATGGTTGTAACCAATGGTGGCTACAACCATAGTGAATTTGACCCTAGTGCTCCTCCACCATTTAAGATAGCAGATATTAGAGCTGCTATTCCAAAACATTGTTGGGTGAAGAACACATGGAGATCTCTAAGTTATGTTCTTAGAGATGTGGTGGTTGTTACTGCATTGATTGTAGCTGCAATTCAGTTTGATAGCGGGTATTTTTGGCCAATTTATTGGCCTCTTCAAGGCACAATGTTTTGGGCAATTTTTGTTCTTGGACATGATTGGTAAGAAAATTATTAAAAAAAATTCAATTATGTTTTTTTGTTTCACTTATGTTAATGTTATGTCATATGGTTTTTGTTATGTTTTTTGATGCGAACATTGATGTTTTGTTTGGAATAGTGGCCATGGAAGCTTCTCAGATAGTTCTTTGGTGAATAACTTTGTGGGCCATATTTTGCATTCCTCAATTCTTGTTCCTTACCATGGATGGTTAGTGAAAGTTTATAGAATTTTTTATTTTTTTATTAATAAGAAGCAATGTTTGTCCATGTTTTTGTTCCATGGGTAAAACTTTACTTTGATTTAATGTAAGAAATTTCAATTTTTTGCTTGAATGAATTTTTCAGGAGAATTAGTCACAAAACACATCATCAAAACCATGGAAATGTTGAGAAGGATGAGTCATGGGTTCCAGTATGTGATTTATTTATTGATTTTATTGTTAGTTCTTAATTAATTTGTTATTATATGCATAGTTTTGGTGGTTTAGTCCCAACAAAGGGGAACAATGAAGTAACTTTCATTTGATGAGTTTTGTTCATAATATTTTATTTTTGTGTCATTATCTTAGTTGACAGAAAAGGTTTACAAGAATCTAGACAACATGACAAAATTTGTGAGATTCACAGTGCCTTTACCATTGTTGGCATATCCAATTTATTTGGTGAGTTTTTTTCTTTTTAACTATCAAATAGAAAAACAAATTTTGTTATTATCATGATATTATAATTAAAGATGTTTTTTTTCATATTCTAATGTAAAATGTTAATGTTTCAGTGGAGTAGAAGTCCTGGAAAATCAGGGTCACACTTTCATCCCTATAGCGACTTGTTCTCACCCAATGAGAGAAAAGAAGTGACAGTTTCAACAGTTTGTTGGCTTCTCATGTTTTCTTTGCTTCTCTATTTGTCCTTCACAACTAGTCCACTTTTAATTCTCAAACTTTATGGAGTTCCCTATTGGGTAAAGTTACTTTCATTTTTAAATGCATTTTTGGAATCACAACTAGTTTATCAAAAATTATAGTGACAATGTAATTTTGTTGAATGTATCTTTTACAAAATTTACAGCCTTTCACCGTAATTCTACCAAATTTACCGTTTATCGACACACCGTCTTATAAATGATTATTATATGCTGGTATTGAATAACTGCAGATATTTGTAATGTGGTTGGATTTTGTCACATACTTGCATCACCACGGTTACACGCAGAAATTACCATGGTACCGTGGCAAGGTAAAAATATAATGAAATATGTACCTTCAATCAATCAATTATTTATGTGCGTAATTAGGTGATTATGTACCTCAAATCTTGTTGAGTCTGATTACTCATGTGTACAATTTGGTAGGAATGGAGTTATCTAAGAGGTGGACTCACAACCGTTGATCGTGACTATGGTTGGATTAACAACATTCACCATGACATTGGCACACATGTTGTTCATCATCTTTTCCCTCAAATTCCTCATTATCACTTGGTTGAAGCGGTAATTACTTACGGGCTTCATCCTACTTTTATTTCTTTAACCAGTGTCTCAGGGTCACCGGTCATTTTATACGTTCGATATCGTGTTAACGATTGCAATCTTTTTCATTTGATACTAAACTTACTCCTTTTTTTAATTCATGCAGACTAAAGCAGCAAAACCAATTTTTGGAGACTATTACCGTGAGCCAGAAAAATCATCACCACTTCCATTTCATCTAATTAAATACTTACTACAAAGTATGAAGCAAGATCACTTTGTTAGTGACACTGGAGATGTTGTCTTTTATCAAACTGATCCTCAGCTCCACAAGAAGCACAATGAATAA
Protein sequence

>MS.gene53980.t1

MVVTNGGYNHSEFDPSAPPPFKIADIRAAIPKHCWVKNTWRSLSYVLRDVVVVTALIVAAIQFDSGYFWPIYWPLQGTMFWAIFVLGHDCGHGSFSDSSLVNNFVGHILHSSILVPYHGWRISHKTHHQNHGNVEKDESWVPLTEKVYKNLDNMTKFVRFTVPLPLLAYPIYLWSRSPGKSGSHFHPYSDLFSPNERKEVTVSTVCWLLMFSLLLYLSFTTSPLLILKLYGVPYWIFVMWLDFVTYLHHHGYTQKLPWYRGKEWSYLRGGLTTVDRDYGWINNIHHDIGTHVVHHLFPQIPHYHLVEATKAAKPIFGDYYREPEKSSPLPFHLIKYLLQSMKQDHFVSDTGDVVFYQTDPQLHKKHNE