AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54100.t1 MTR_1g010210 95.833 168 7 0 154 321 314 481 1.34e-108 325
MS.gene54100.t1 MTR_1g010210 81.818 198 22 3 1 191 1 191 5.08e-104 313
MS.gene54100.t1 MTR_1g010270 87.261 157 20 0 154 310 298 454 7.54e-91 278
MS.gene54100.t1 MTR_1g010270 60.101 198 61 3 1 191 1 187 1.79e-68 221
MS.gene54100.t1 MTR_3g464210 75.269 186 41 2 1 185 1 182 2.52e-87 270
MS.gene54100.t1 MTR_3g464210 78.035 173 34 1 151 319 311 483 2.16e-77 244
MS.gene54100.t1 MTR_3g108190 73.256 172 42 1 151 318 287 458 1.79e-81 254
MS.gene54100.t1 MTR_3g108190 64.596 161 46 2 38 191 20 176 1.82e-59 197
MS.gene54100.t1 MTR_4g011600 60.479 167 62 1 142 304 285 451 1.95e-63 208
MS.gene54100.t1 MTR_4g011600 55.556 126 51 2 52 176 37 158 1.33e-36 137
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54100.t1 AT2G25680 68.675 166 47 2 151 312 283 447 3.58e-71 228
MS.gene54100.t1 AT2G25680 79.070 129 25 1 39 165 23 151 6.48e-62 204
MS.gene54100.t1 AT1G80310 60.127 158 58 2 142 295 272 428 9.21e-58 193
MS.gene54100.t1 AT1G80310 54.762 126 52 2 52 176 31 152 1.28e-31 123

Find 77 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTGTCTGCACTGCATCTT+TGG 0.095650 1.2:+9937940 None:intergenic
GTAACTGAAAATTCCCTTTC+AGG 0.152803 1.2:+9936945 None:intergenic
CTCTTTCTTCAAATTTAGTT+TGG 0.243561 1.2:+9936486 None:intergenic
TGATGAATTTAGTTGGTTCT+TGG 0.259940 1.2:-9936899 MS.gene54100:CDS
GGAGTGATTTCATGAGCTTC+TGG 0.283217 1.2:+9938001 None:intergenic
TCAAAATGGGCTGAAATTAA+TGG 0.293645 1.2:-9937896 MS.gene54100:CDS
GGAGGGTGTGTGGCACTTCT+TGG 0.303917 1.2:-9936807 MS.gene54100:CDS
ATCATCACTGGTGTCATATA+TGG 0.310944 1.2:-9937662 MS.gene54100:CDS
CTAGCAGGACAGTATAAATT+TGG 0.316271 1.2:-9936840 MS.gene54100:CDS
CGCGGCAGCGATTGACTTCA+TGG 0.332278 1.2:+9937619 None:intergenic
TATTTGCACTGCTGTTTCAT+TGG 0.337708 1.2:-9936622 MS.gene54100:CDS
TTTGAATTGAAGGAGGGTTT+TGG 0.351391 1.2:+9938032 None:intergenic
TGCACTGCTGTTTCATTGGT+TGG 0.352590 1.2:-9936618 MS.gene54100:CDS
AGTGTCTGCACTGCATCTTT+GGG 0.354736 1.2:+9937941 None:intergenic
GCCTTATCAGACAAAGATTT+CGG 0.369692 1.2:-9937596 MS.gene54100:CDS
AATTTAGTTGGTTCTTGGTT+TGG 0.373157 1.2:-9936894 MS.gene54100:CDS
ATTCCCCTCACAACAGATAA+AGG 0.381862 1.2:+9937479 None:intergenic
ATTGACTTCATGGGCTGAAC+AGG 0.399970 1.2:+9937629 None:intergenic
GGATCTGATGTTTGAATTGA+AGG 0.402916 1.2:+9938022 None:intergenic
ATAAACCACTTTCTACCATA+TGG 0.403694 1.2:-9936521 MS.gene54100:CDS
GTTGGATCAAGTGCTGCTCT+TGG 0.405444 1.2:-9936600 MS.gene54100:CDS
TGCAAAATTGGTATTGGGAT+TGG 0.405472 1.2:-9936781 MS.gene54100:CDS
GAATGGTTTGTTGGAGGTGT+TGG 0.409771 1.2:+9937980 None:intergenic
CTTGTGGCTGAATGGTTTGT+TGG 0.410139 1.2:+9937971 None:intergenic
GGTGGCGTGCTCTTTGTTCT+CGG 0.412718 1.2:-9937539 MS.gene54100:CDS
CTCTTTGTTCTCGGTATCAC+AGG 0.413494 1.2:-9937530 MS.gene54100:CDS
TGTTACTTAAGCTAAGGAAT+TGG 0.417510 1.2:-9936551 MS.gene54100:CDS
GTGCCAACTTGTCATGGTGC+TGG 0.439717 1.2:-9936867 MS.gene54100:CDS
ATCTTTGGGTTTGAAACTTG+TGG 0.442751 1.2:+9937955 None:intergenic
TAACTGAAAATTCCCTTTCA+GGG 0.444301 1.2:+9936946 None:intergenic
AACACACCTAAAATCCCAAC+TGG 0.446139 1.2:+9936720 None:intergenic
GCCGAAATCTTTGTCTGATA+AGG 0.459735 1.2:+9937595 None:intergenic
GTTGGGTTGATGAATTTAGT+TGG 0.465580 1.2:-9936906 MS.gene54100:CDS
TATAAATTTGGTGGAAGAAG+TGG 0.472717 1.2:-9936828 MS.gene54100:CDS
ATTCCAGCTGTCATTATCTC+TGG 0.479556 1.2:+9937569 None:intergenic
CATCAATTTCAGTGACAGTT+GGG 0.484371 1.2:-9936923 MS.gene54100:CDS
GTTTGAAACTTGTGGCTGAA+TGG 0.492699 1.2:+9937963 None:intergenic
AGAGTGAGAGCCAAGACTAT+AGG 0.494228 1.2:+9937845 None:intergenic
GTGGCTGAATGGTTTGTTGG+AGG 0.495034 1.2:+9937974 None:intergenic
AATGGTGCCATGGGTGATCT+TGG 0.501937 1.2:-9937878 MS.gene54100:CDS
GGTGCTGTGCCAACTTGTCA+TGG 0.504890 1.2:-9936873 MS.gene54100:CDS
ACATCAATTTCAGTGACAGT+TGG 0.505075 1.2:-9936924 MS.gene54100:CDS
TAGCAAAGAAGATTCATTTG+TGG 0.510722 1.2:-9936649 MS.gene54100:CDS
CATGGTGCTGGTGGACTAGC+AGG 0.515807 1.2:-9936855 MS.gene54100:CDS
TTTATGTGTTACTTAAGCTA+AGG 0.517035 1.2:-9936557 MS.gene54100:CDS
CCAACTTGTCATGGTGCTGG+TGG 0.520067 1.2:-9936864 MS.gene54100:CDS
CTGATGTTTGAATTGAAGGA+GGG 0.521335 1.2:+9938026 None:intergenic
GATTCCTTTATCTGTTGTGA+GGG 0.522285 1.2:-9937483 MS.gene54100:CDS
TACATATATACCTATAGTCT+TGG 0.528025 1.2:-9937855 MS.gene54100:CDS
TCAATGTGGTGCCAAGGTTG+AGG 0.535731 1.2:+9937813 None:intergenic
TGGTTCCATATGGTAGAAAG+TGG 0.540368 1.2:+9936516 None:intergenic
GGCTGAAATTAATGGTGCCA+TGG 0.548607 1.2:-9937888 MS.gene54100:CDS
GCGGCAGCGATTGACTTCAT+GGG 0.552618 1.2:+9937620 None:intergenic
GCAGGACAGTATAAATTTGG+TGG 0.559975 1.2:-9936837 MS.gene54100:CDS
TGATTCCTTTATCTGTTGTG+AGG 0.568857 1.2:-9937484 MS.gene54100:CDS
ATGACAGCTGGAATCTTGAC+CGG 0.569949 1.2:-9937560 MS.gene54100:CDS
CCACCAGCACCATGACAAGT+TGG 0.570149 1.2:+9936864 None:intergenic
CTTGGCTCTCACTCTAGCTA+AGG 0.577324 1.2:-9937837 MS.gene54100:CDS
CATGAAGTCAATCGCTGCCG+CGG 0.579851 1.2:-9937618 MS.gene54100:CDS
AAATTTGGTGGAAGAAGTGG+AGG 0.580866 1.2:-9936825 MS.gene54100:CDS
ATTCCTTTATCTGTTGTGAG+GGG 0.583159 1.2:-9937482 MS.gene54100:CDS
CTAGCTAAGGACCTCAACCT+TGG 0.586821 1.2:-9937824 MS.gene54100:CDS
GGTGTCTACAACATCATCAC+TGG 0.588180 1.2:-9937674 MS.gene54100:CDS
TATCACAGGATTGATGCAGC+TGG 0.589104 1.2:-9937516 MS.gene54100:CDS
TCTGATGTTTGAATTGAAGG+AGG 0.598428 1.2:+9938025 None:intergenic
GTGCCAGAGATAATGACAGC+TGG 0.605476 1.2:-9937572 MS.gene54100:CDS
TGGAAGAAGTGGAGGGTGTG+TGG 0.611929 1.2:-9936817 MS.gene54100:CDS
GAGAACAAAGAGCACGCCAC+CGG 0.612127 1.2:+9937541 None:intergenic
ATCTTTGTCTGATAAGGCCG+CGG 0.630622 1.2:+9937601 None:intergenic
GCTGAAATTAATGGTGCCAT+GGG 0.646415 1.2:-9937887 MS.gene54100:CDS
TTCATGGGCTGAACAGGCAT+AGG 0.650381 1.2:+9937635 None:intergenic
TGAAAATCAATGTGGTGCCA+AGG 0.655634 1.2:+9937807 None:intergenic
ATATGTACCAAGATCACCCA+TGG 0.656064 1.2:+9937871 None:intergenic
AGGGGAATTCAACTAGCACA+AGG 0.671542 1.2:-9937464 MS.gene54100:intron
ACAGCTGGAATCTTGACCGG+TGG 0.675343 1.2:-9937557 MS.gene54100:CDS
AATTTGGTGGAAGAAGTGGA+GGG 0.686532 1.2:-9936824 MS.gene54100:CDS
TATACCGTTGAAAATCAATG+TGG 0.718574 1.2:+9937799 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTGTACATGAAATTAAATT+TGG - chr1.2:9937436-9937455 MS.gene54100:intron 20.0%
!! TGAAATTCACTAAACAAAAT+TGG - chr1.2:9937479-9937498 MS.gene54100:CDS 20.0%
!!! TGTTTTATTGTGATTGTTAA+TGG - chr1.2:9937223-9937242 MS.gene54100:intron 20.0%
! AATAAAACAAGCACAAACAA+TGG + chr1.2:9937212-9937231 None:intergenic 25.0%
! ACTAAACAAAATTGGAAGAA+AGG - chr1.2:9937487-9937506 MS.gene54100:CDS 25.0%
! TACATATATACCTATAGTCT+TGG - chr1.2:9936685-9936704 MS.gene54100:CDS 25.0%
! TTCATTACTTCTATTGAAGA+TGG + chr1.2:9937463-9937482 None:intergenic 25.0%
! TTTCTTATGTAATTCATGTC+CGG - chr1.2:9936834-9936853 MS.gene54100:CDS 25.0%
!!! TGGAAGAAAGGTTTTATTAA+AGG - chr1.2:9937499-9937518 MS.gene54100:CDS 25.0%
!!! TTTATGTGTTACTTAAGCTA+AGG - chr1.2:9937983-9938002 MS.gene54100:CDS 25.0%
ACAAAGACTATAAAAGCAGA+AGG + chr1.2:9937379-9937398 None:intergenic 30.0%
ATAAACCACTTTCTACCATA+TGG - chr1.2:9938019-9938038 MS.gene54100:CDS 30.0%
CTTCCAAAGTCTAAATCTTT+AGG - chr1.2:9937148-9937167 MS.gene54100:intron 30.0%
TAACTGAAAATTCCCTTTCA+GGG + chr1.2:9937597-9937616 None:intergenic 30.0%
TAGCAAAGAAGATTCATTTG+TGG - chr1.2:9937891-9937910 MS.gene54100:CDS 30.0%
TATACCGTTGAAAATCAATG+TGG + chr1.2:9936744-9936763 None:intergenic 30.0%
! AATTTAGTTGGTTCTTGGTT+TGG - chr1.2:9937646-9937665 MS.gene54100:CDS 30.0%
! GCTTTTATAGTCTTTGTGTT+GGG - chr1.2:9937382-9937401 MS.gene54100:intron 30.0%
! GGTTTTGCAAAATTGGTATT+GGG - chr1.2:9937754-9937773 MS.gene54100:intron 30.0%
! TAATTTCAGCCCATTTTGAA+CGG + chr1.2:9936643-9936662 None:intergenic 30.0%
! TATAAATTTGGTGGAAGAAG+TGG - chr1.2:9937712-9937731 MS.gene54100:intron 30.0%
! TGATGAATTTAGTTGGTTCT+TGG - chr1.2:9937641-9937660 MS.gene54100:CDS 30.0%
! TGCTTTTATAGTCTTTGTGT+TGG - chr1.2:9937381-9937400 MS.gene54100:intron 30.0%
! TGTTACTTAAGCTAAGGAAT+TGG - chr1.2:9937989-9938008 MS.gene54100:CDS 30.0%
!! TCAAAATGGGCTGAAATTAA+TGG - chr1.2:9936644-9936663 MS.gene54100:CDS 30.0%
!! TGGTTTTGCAAAATTGGTAT+TGG - chr1.2:9937753-9937772 MS.gene54100:intron 30.0%
!!! ACTTCTTGGTTTTGCAAAAT+TGG - chr1.2:9937747-9937766 MS.gene54100:intron 30.0%
!!! ACTTTGTTTTCCGTTCAAAA+TGG - chr1.2:9936630-9936649 MS.gene54100:CDS 30.0%
!!! CTTTGTTTTCCGTTCAAAAT+GGG - chr1.2:9936631-9936650 MS.gene54100:CDS 30.0%
AAACCATCTAAACCAAACCA+AGG + chr1.2:9937181-9937200 None:intergenic 35.0%
AACATTGACAATGGAAGTTG+TGG + chr1.2:9937532-9937551 None:intergenic 35.0%
ACAGAGTTCAACATTGACAA+TGG + chr1.2:9937541-9937560 None:intergenic 35.0%
ACATCAATTTCAGTGACAGT+TGG - chr1.2:9937616-9937635 MS.gene54100:CDS 35.0%
ATTCCTTTATCTGTTGTGAG+GGG - chr1.2:9937058-9937077 MS.gene54100:intron 35.0%
ATTGTGATTGTTAATGGAGC+TGG - chr1.2:9937229-9937248 MS.gene54100:intron 35.0%
ATTTGGATGGCCAAATTCAA+AGG - chr1.2:9937293-9937312 MS.gene54100:intron 35.0%
CAAATTCAAAGGAGTGATGA+AGG - chr1.2:9937304-9937323 MS.gene54100:intron 35.0%
CAGAAAAATAGTGGTTGTTG+CGG - chr1.2:9937253-9937272 MS.gene54100:intron 35.0%
CATCAATTTCAGTGACAGTT+GGG - chr1.2:9937617-9937636 MS.gene54100:CDS 35.0%
CTAGCAGGACAGTATAAATT+TGG - chr1.2:9937700-9937719 MS.gene54100:intron 35.0%
CTGATGTTTGAATTGAAGGA+GGG + chr1.2:9936517-9936536 None:intergenic 35.0%
CTTCATCACTCCTTTGAATT+TGG + chr1.2:9937306-9937325 None:intergenic 35.0%
GATTCCTTTATCTGTTGTGA+GGG - chr1.2:9937057-9937076 MS.gene54100:intron 35.0%
GCCTTATCAGACAAAGATTT+CGG - chr1.2:9936944-9936963 MS.gene54100:CDS 35.0%
GGATCTGATGTTTGAATTGA+AGG + chr1.2:9936521-9936540 None:intergenic 35.0%
GTAACTGAAAATTCCCTTTC+AGG + chr1.2:9937598-9937617 None:intergenic 35.0%
TCTGATGTTTGAATTGAAGG+AGG + chr1.2:9936518-9936537 None:intergenic 35.0%
TGATTCCTTTATCTGTTGTG+AGG - chr1.2:9937056-9937075 MS.gene54100:intron 35.0%
TGGCCTAAAGATTTAGACTT+TGG + chr1.2:9937154-9937173 None:intergenic 35.0%
! AACAGATCTTTTCCCTGAAA+GGG - chr1.2:9937582-9937601 MS.gene54100:CDS 35.0%
! ATCTTTGGGTTTGAAACTTG+TGG + chr1.2:9936588-9936607 None:intergenic 35.0%
! ATTTTGCAGCAATTTCCAGT+TGG - chr1.2:9937805-9937824 MS.gene54100:CDS 35.0%
! CAATTTCCAGTTGGGATTTT+AGG - chr1.2:9937814-9937833 MS.gene54100:CDS 35.0%
! CTTTGTGTTGGGAATAGTTT+TGG - chr1.2:9937393-9937412 MS.gene54100:intron 35.0%
! TGCAAAATTGGTATTGGGAT+TGG - chr1.2:9937759-9937778 MS.gene54100:intron 35.0%
! TTTGAATTGAAGGAGGGTTT+TGG + chr1.2:9936511-9936530 None:intergenic 35.0%
! TTTTGCAGCAATTTCCAGTT+GGG - chr1.2:9937806-9937825 MS.gene54100:CDS 35.0%
!! ATCATCACTGGTGTCATATA+TGG - chr1.2:9936878-9936897 MS.gene54100:CDS 35.0%
!! GTTGGGTTGATGAATTTAGT+TGG - chr1.2:9937634-9937653 MS.gene54100:CDS 35.0%
!! TATTTGCACTGCTGTTTCAT+TGG - chr1.2:9937918-9937937 MS.gene54100:CDS 35.0%
!! TTGGTTTGGTTTAGATGGTT+TGG - chr1.2:9937180-9937199 MS.gene54100:intron 35.0%
!!! TTGGTATTGGGATTGGTTTT+AGG - chr1.2:9937766-9937785 MS.gene54100:intron 35.0%
AACACACCTAAAATCCCAAC+TGG + chr1.2:9937823-9937842 None:intergenic 40.0%
AATCTTTAGGCCAAAGACCT+TGG - chr1.2:9937161-9937180 MS.gene54100:intron 40.0%
ATATGTACCAAGATCACCCA+TGG + chr1.2:9936672-9936691 None:intergenic 40.0%
ATTCAAAGGAGTGATGAAGG+TGG - chr1.2:9937307-9937326 MS.gene54100:intron 40.0%
ATTCATGTCCGGAATCTTTC+AGG - chr1.2:9936845-9936864 MS.gene54100:CDS 40.0%
ATTCCAGCTGTCATTATCTC+TGG + chr1.2:9936974-9936993 None:intergenic 40.0%
ATTCCCCTCACAACAGATAA+AGG + chr1.2:9937064-9937083 None:intergenic 40.0%
CCATCCAAATTACCATCTTC+CGG + chr1.2:9937283-9937302 None:intergenic 40.0%
CTAAACCAAACCAAGGTCTT+TGG + chr1.2:9937174-9937193 None:intergenic 40.0%
GCAGGACAGTATAAATTTGG+TGG - chr1.2:9937703-9937722 MS.gene54100:intron 40.0%
GCCGAAATCTTTGTCTGATA+AGG + chr1.2:9936948-9936967 None:intergenic 40.0%
TGGTTCCATATGGTAGAAAG+TGG + chr1.2:9938027-9938046 None:intergenic 40.0%
TGTAGACACCTGAAAGATTC+CGG + chr1.2:9936856-9936875 None:intergenic 40.0%
! AAATTTGGTGGAAGAAGTGG+AGG - chr1.2:9937715-9937734 MS.gene54100:intron 40.0%
! AATTTGGTGGAAGAAGTGGA+GGG - chr1.2:9937716-9937735 MS.gene54100:intron 40.0%
! CAACAGATCTTTTCCCTGAA+AGG - chr1.2:9937581-9937600 MS.gene54100:CDS 40.0%
! GTTTGAAACTTGTGGCTGAA+TGG + chr1.2:9936580-9936599 None:intergenic 40.0%
! TGAAAATCAATGTGGTGCCA+AGG + chr1.2:9936736-9936755 None:intergenic 40.0%
!! AAGTGCTGCTCTTGGATTTT+TGG - chr1.2:9937948-9937967 MS.gene54100:CDS 40.0%
!! AGACCTTGGTTTGGTTTAGA+TGG - chr1.2:9937175-9937194 MS.gene54100:intron 40.0%
!! CGCAACAACCACTATTTTTC+TGG + chr1.2:9937255-9937274 None:intergenic 40.0%
!! GCTGAAATTAATGGTGCCAT+GGG - chr1.2:9936653-9936672 MS.gene54100:CDS 40.0%
!!! GGCACCACATTGATTTTCAA+CGG - chr1.2:9936737-9936756 MS.gene54100:CDS 40.0%
!!! GGTGTGTTACTTTTGTTTGC+TGG - chr1.2:9937835-9937854 MS.gene54100:CDS 40.0%
!!! TGGACTTTTCTGGTTCCATA+TGG + chr1.2:9938037-9938056 None:intergenic 40.0%
AGAGTGAGAGCCAAGACTAT+AGG + chr1.2:9936698-9936717 None:intergenic 45.0%
AGGGGAATTCAACTAGCACA+AGG - chr1.2:9937076-9937095 MS.gene54100:intron 45.0%
AGTGTCTGCACTGCATCTTT+GGG + chr1.2:9936602-9936621 None:intergenic 45.0%
ATCTTTGTCTGATAAGGCCG+CGG + chr1.2:9936942-9936961 None:intergenic 45.0%
ATGACAGCTGGAATCTTGAC+CGG - chr1.2:9936980-9936999 MS.gene54100:intron 45.0%
CCGGAAGATGGTAATTTGGA+TGG - chr1.2:9937280-9937299 MS.gene54100:intron 45.0%
CTCTTTGTTCTCGGTATCAC+AGG - chr1.2:9937010-9937029 MS.gene54100:intron 45.0%
GGAGTGATTTCATGAGCTTC+TGG + chr1.2:9936542-9936561 None:intergenic 45.0%
GGTGTCTACAACATCATCAC+TGG - chr1.2:9936866-9936885 MS.gene54100:CDS 45.0%
TATCACAGGATTGATGCAGC+TGG - chr1.2:9937024-9937043 MS.gene54100:intron 45.0%
TGCTCCGGAAGATGGTAATT+TGG - chr1.2:9937276-9937295 MS.gene54100:intron 45.0%
TTAGGCCAAAGACCTTGGTT+TGG - chr1.2:9937166-9937185 MS.gene54100:intron 45.0%
! ATTGACTTCATGGGCTGAAC+AGG + chr1.2:9936914-9936933 None:intergenic 45.0%
! CTTGTGGCTGAATGGTTTGT+TGG + chr1.2:9936572-9936591 None:intergenic 45.0%
! GGCTGAAATTAATGGTGCCA+TGG - chr1.2:9936652-9936671 MS.gene54100:CDS 45.0%
!! GAATGGTTTGTTGGAGGTGT+TGG + chr1.2:9936563-9936582 None:intergenic 45.0%
!! TGCACTGCTGTTTCATTGGT+TGG - chr1.2:9937922-9937941 MS.gene54100:CDS 45.0%
!!! GCTGCTCTTGGATTTTTGGT+TGG - chr1.2:9937952-9937971 MS.gene54100:CDS 45.0%
CAGTGTCTGCACTGCATCTT+TGG + chr1.2:9936603-9936622 None:intergenic 50.0%
CTAGCTAAGGACCTCAACCT+TGG - chr1.2:9936716-9936735 MS.gene54100:CDS 50.0%
GGAGCTGGCCAGAAAAATAG+TGG - chr1.2:9937244-9937263 MS.gene54100:intron 50.0%
GTGCCAGAGATAATGACAGC+TGG - chr1.2:9936968-9936987 MS.gene54100:intron 50.0%
! CTTGGCTCTCACTCTAGCTA+AGG - chr1.2:9936703-9936722 MS.gene54100:CDS 50.0%
! GTTGGATCAAGTGCTGCTCT+TGG - chr1.2:9937940-9937959 MS.gene54100:CDS 50.0%
! TCAATGTGGTGCCAAGGTTG+AGG + chr1.2:9936730-9936749 None:intergenic 50.0%
! TTCATGGGCTGAACAGGCAT+AGG + chr1.2:9936908-9936927 None:intergenic 50.0%
!! AATGGTGCCATGGGTGATCT+TGG - chr1.2:9936662-9936681 MS.gene54100:CDS 50.0%
!! GTGGCTGAATGGTTTGTTGG+AGG + chr1.2:9936569-9936588 None:intergenic 50.0%
ACAGCTGGAATCTTGACCGG+TGG - chr1.2:9936983-9937002 MS.gene54100:intron 55.0%
CATGAAGTCAATCGCTGCCG+CGG - chr1.2:9936922-9936941 MS.gene54100:CDS 55.0%
CCACCAGCACCATGACAAGT+TGG + chr1.2:9937679-9937698 None:intergenic 55.0%
GGTGGCGTGCTCTTTGTTCT+CGG - chr1.2:9937001-9937020 MS.gene54100:intron 55.0%
GTGCCAACTTGTCATGGTGC+TGG - chr1.2:9937673-9937692 MS.gene54100:CDS 55.0%
TAGTGGTTGTTGCGGTGCTC+CGG - chr1.2:9937261-9937280 MS.gene54100:intron 55.0%
! CCAACTTGTCATGGTGCTGG+TGG - chr1.2:9937676-9937695 MS.gene54100:CDS 55.0%
! GAGAACAAAGAGCACGCCAC+CGG + chr1.2:9937002-9937021 None:intergenic 55.0%
! GCGGCAGCGATTGACTTCAT+GGG + chr1.2:9936923-9936942 None:intergenic 55.0%
! GGTGCTGTGCCAACTTGTCA+TGG - chr1.2:9937667-9937686 MS.gene54100:CDS 55.0%
! TGGAAGAAGTGGAGGGTGTG+TGG - chr1.2:9937723-9937742 MS.gene54100:intron 55.0%
TGTTGCGGTGCTCCGGAAGA+TGG - chr1.2:9937268-9937287 MS.gene54100:intron 60.0%
! CGCGGCAGCGATTGACTTCA+TGG + chr1.2:9936924-9936943 None:intergenic 60.0%
! GGAGGGTGTGTGGCACTTCT+TGG - chr1.2:9937733-9937752 MS.gene54100:intron 60.0%
!! CATGGTGCTGGTGGACTAGC+AGG - chr1.2:9937685-9937704 MS.gene54100:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 9936500 9938062 9936500 ID=MS.gene54100
chr1.2 mRNA 9936500 9938062 9936500 ID=MS.gene54100.t1;Parent=MS.gene54100
chr1.2 exon 9937804 9938062 9937804 ID=MS.gene54100.t1.exon1;Parent=MS.gene54100.t1
chr1.2 CDS 9937804 9938062 9937804 ID=cds.MS.gene54100.t1;Parent=MS.gene54100.t1
chr1.2 exon 9937465 9937695 9937465 ID=MS.gene54100.t1.exon2;Parent=MS.gene54100.t1
chr1.2 CDS 9937465 9937695 9937465 ID=cds.MS.gene54100.t1;Parent=MS.gene54100.t1
chr1.2 exon 9936500 9936975 9936500 ID=MS.gene54100.t1.exon3;Parent=MS.gene54100.t1
chr1.2 CDS 9936500 9936975 9936500 ID=cds.MS.gene54100.t1;Parent=MS.gene54100.t1
Gene Sequence

>MS.gene54100

ATGGCATACCAAAACCCTCCTTCAATTCAAACATCAGATCCAGAAGCTCATGAAATCACTCCAACACCTCCAACAAACCATTCAGCCACAAGTTTCAAACCCAAAGATGCAGTGCAGACACTGAAAAACAACTTTGTTTTCCGTTCAAAATGGGCTGAAATTAATGGTGCCATGGGTGATCTTGGTACATATATACCTATAGTCTTGGCTCTCACTCTAGCTAAGGACCTCAACCTTGGCACCACATTGATTTTCAACGGTATATTCTGACATACATACATATATAGTATCTGTAATGTATATGTATTTATGCATGCACACAAATAATCTCTTTTTTCTTATGTAATTCATGTCCGGAATCTTTCAGGTGTCTACAACATCATCACTGGTGTCATATATGGAGTGCCTATGCCTGTTCAGCCCATGAAGTCAATCGCTGCCGCGGCCTTATCAGACAAAGATTTCGGCGTGCCAGAGATAATGACAGCTGGAATCTTGACCGGTGGCGTGCTCTTTGTTCTCGGTATCACAGGATTGATGCAGCTGGTGTATAAGTTGATTCCTTTATCTGTTGTGAGGGGAATTCAACTAGCACAAGGTTTGTCATTTGCTTTAACAGCTGTTAAATATGTGAGAAAAGTGCAAGATCTTCCAAAGTCTAAATCTTTAGGCCAAAGACCTTGGTTTGGTTTAGATGGTTTGGTTCTAGCCATTGTTTGTGCTTGTTTTATTGTGATTGTTAATGGAGCTGGCCAGAAAAATAGTGGTTGTTGCGGTGCTCCGGAAGATGGTAATTTGGATGGCCAAATTCAAAGGAGTGATGAAGGTGGAAGAAAGACTAAGATGAATAAATTGAGAAAGATTATTTTTTCACTTCCTTCTGCTTTTATAGTCTTTGTGTTGGGAATAGTTTTGGTTTTTATAAGAAGAAGTGAAGTTGTACATGAAATTAAATTTGGACCATCTTCAATAGAAGTAATGAAATTCACTAAACAAAATTGGAAGAAAGGTTTTATTAAAGGTGCAATTCCACAACTTCCATTGTCAATGTTGAACTCTGTGATAGCTGTTTGTAAATTATCAACAGATCTTTTCCCTGAAAGGGAATTTTCAGTTACATCAATTTCAGTGACAGTTGGGTTGATGAATTTAGTTGGTTCTTGGTTTGGTGCTGTGCCAACTTGTCATGGTGCTGGTGGACTAGCAGGACAGTATAAATTTGGTGGAAGAAGTGGAGGGTGTGTGGCACTTCTTGGTTTTGCAAAATTGGTATTGGGATTGGTTTTAGGAACATCTTTAGCACACATTTTGCAGCAATTTCCAGTTGGGATTTTAGGTGTGTTACTTTTGTTTGCTGGTATTGAACTTGCTATGTGTGCTAGAGATATGAATAGCAAAGAAGATTCATTTGTGGCACTTATTTGCACTGCTGTTTCATTGGTTGGATCAAGTGCTGCTCTTGGATTTTTGGTTGGAATGATTGTTTATGTGTTACTTAAGCTAAGGAATTGGAGTAATGATAAACCACTTTCTACCATATGGAACCAGAAAAGTCCAAACTAA
Protein sequence

>MS.gene54100.t1

MAYQNPPSIQTSDPEAHEITPTPPTNHSATSFKPKDAVQTLKNNFVFRSKWAEINGAMGDLGTYIPIVLALTLAKDLNLGTTLIFNGVYNIITGVIYGVPMPVQPMKSIAAAALSDKDFGVPEIMTAGILTGGVLFVLGITGLMQLVYKLIPLSVVRGIQLAQDLFPEREFSVTSISVTVGLMNLVGSWFGAVPTCHGAGGLAGQYKFGGRSGGCVALLGFAKLVLGLVLGTSLAHILQQFPVGILGVLLLFAGIELAMCARDMNSKEDSFVALICTAVSLVGSSAALGFLVGMIVYVLLKLRNWSNDKPLSTIWNQKSPN