AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54142

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54142.t1 MTR_2g068880 91.346 312 25 2 1 310 1 312 0.0 595
MS.gene54142.t1 MTR_2g068920 80.707 311 39 3 1 310 1 291 0.0 512
MS.gene54142.t1 MTR_5g090970 52.000 300 133 8 9 304 6 298 2.98e-95 284
MS.gene54142.t1 MTR_5g090970 51.333 300 134 8 9 304 6 297 5.57e-94 281
MS.gene54142.t1 MTR_5g040420 52.137 234 98 5 18 243 11 238 7.04e-75 235
MS.gene54142.t1 MTR_8g467490 62.500 168 58 3 18 185 11 173 8.10e-73 229
MS.gene54142.t1 MTR_6g011860 57.143 189 59 6 3 185 1 173 1.93e-67 216
MS.gene54142.t1 MTR_4g134460 50.296 169 67 4 17 185 50 201 3.89e-50 172
MS.gene54142.t1 MTR_5g012080 42.254 213 98 6 20 224 7 202 1.53e-49 168
MS.gene54142.t1 MTR_8g094580 45.876 194 92 5 23 216 9 189 6.13e-49 165
MS.gene54142.t1 MTR_2g079990 52.071 169 65 4 23 191 18 170 7.65e-49 166
MS.gene54142.t1 MTR_7g085220 47.929 169 75 5 23 186 10 170 1.03e-48 166
MS.gene54142.t1 MTR_3g088110 53.374 163 62 5 23 185 9 157 1.43e-48 164
MS.gene54142.t1 MTR_4g036030 46.199 171 72 4 20 188 7 159 1.51e-48 166
MS.gene54142.t1 MTR_2g080010 45.930 172 82 4 23 190 17 181 2.68e-48 165
MS.gene54142.t1 MTR_8g059170 51.724 174 64 6 23 193 16 172 4.95e-48 164
MS.gene54142.t1 MTR_4g089135 46.667 180 77 4 23 188 17 191 7.46e-48 164
MS.gene54142.t1 MTR_2157s0010 45.783 166 82 4 23 186 10 169 9.97e-48 161
MS.gene54142.t1 MTR_5g041940 38.519 270 130 9 23 279 5 251 1.49e-47 160
MS.gene54142.t1 MTR_4g101680 44.809 183 79 5 20 198 7 171 3.49e-47 162
MS.gene54142.t1 MTR_7g100990 40.097 207 107 5 23 229 13 202 9.59e-47 160
MS.gene54142.t1 MTR_4g081870 50.000 164 68 4 23 185 11 161 1.08e-46 159
MS.gene54142.t1 MTR_2g079990 47.312 186 76 5 23 191 18 198 6.01e-46 159
MS.gene54142.t1 MTR_2g064090 46.386 166 74 4 23 187 8 159 6.39e-46 159
MS.gene54142.t1 MTR_6g477900 37.281 228 105 6 23 241 8 206 7.37e-46 155
MS.gene54142.t1 MTR_6g012670 36.782 261 141 8 23 277 22 264 1.76e-45 157
MS.gene54142.t1 MTR_2g093810 45.238 168 82 3 23 190 16 173 3.68e-45 156
MS.gene54142.t1 MTR_3g435150 45.143 175 82 3 17 191 12 172 1.11e-44 154
MS.gene54142.t1 MTR_5g021710 41.000 200 98 4 20 217 8 189 1.42e-44 155
MS.gene54142.t1 MTR_7g085260 46.023 176 84 4 19 194 16 180 1.46e-44 156
MS.gene54142.t1 MTR_3g064580 49.102 167 66 5 23 186 8 158 1.68e-44 160
MS.gene54142.t1 MTR_3g096920 49.080 163 69 6 23 185 9 157 1.74e-44 153
MS.gene54142.t1 MTR_7g005280 45.304 181 79 5 13 192 6 167 2.54e-44 152
MS.gene54142.t1 MTR_2g062730 37.903 248 119 9 20 262 10 227 3.63e-44 154
MS.gene54142.t1 MTR_4g108760 43.750 176 84 4 19 194 16 176 5.05e-44 154
MS.gene54142.t1 MTR_6g032770 47.368 171 77 4 17 186 13 171 6.19e-44 154
MS.gene54142.t1 MTR_8g076110 45.029 171 74 4 20 188 6 158 1.30e-43 152
MS.gene54142.t1 MTR_8g024480 45.238 168 83 4 20 185 15 175 1.39e-43 154
MS.gene54142.t1 MTR_5g076850 47.273 165 71 4 23 186 8 157 2.90e-43 157
MS.gene54142.t1 MTR_3g096920 43.229 192 74 6 23 185 9 194 3.21e-43 151
MS.gene54142.t1 MTR_7g011130 33.929 336 172 11 1 301 1 321 1.15e-41 147
MS.gene54142.t1 MTR_6g084430 42.286 175 82 5 17 191 2 157 2.21e-41 146
MS.gene54142.t1 MTR_3g070030 34.576 295 165 11 3 283 1 281 4.30e-41 146
MS.gene54142.t1 MTR_1g096430 43.636 165 74 3 23 185 9 156 5.35e-41 145
MS.gene54142.t1 MTR_4g098630 39.524 210 104 6 23 231 8 195 5.81e-41 145
MS.gene54142.t1 MTR_1g090723 44.186 172 79 4 23 192 10 166 9.85e-41 150
MS.gene54142.t1 MTR_1g090723 44.767 172 77 4 23 192 10 165 1.36e-40 149
MS.gene54142.t1 MTR_3g109340 42.781 187 91 5 5 191 7 177 1.55e-40 145
MS.gene54142.t1 MTR_1g090723 44.767 172 77 4 23 192 10 165 1.78e-40 149
MS.gene54142.t1 MTR_5g014300 42.857 168 78 3 23 186 8 161 1.97e-40 144
MS.gene54142.t1 MTR_3g109340 41.711 187 92 4 5 191 7 176 2.82e-40 144
MS.gene54142.t1 MTR_4g075980 41.053 190 88 4 1 190 1 166 3.80e-40 142
MS.gene54142.t1 MTR_2g078700 44.118 170 82 5 17 186 20 176 8.53e-40 143
MS.gene54142.t1 MTR_7g011120 34.532 278 163 7 9 283 1 262 1.21e-39 141
MS.gene54142.t1 MTR_2g064470 46.341 164 71 5 23 186 13 159 1.42e-39 141
MS.gene54142.t1 MTR_4g035590 37.619 210 100 7 20 227 8 188 1.59e-39 142
MS.gene54142.t1 MTR_8g099750 45.181 166 80 4 23 188 16 170 1.76e-39 138
MS.gene54142.t1 MTR_1g008740 41.304 184 92 5 9 191 1 169 7.21e-39 140
MS.gene54142.t1 MTR_1g008740 40.957 188 95 5 5 191 11 183 9.22e-39 140
MS.gene54142.t1 MTR_0036s0150 45.349 172 76 5 23 192 7 162 1.34e-38 143
MS.gene54142.t1 MTR_3g098810 38.916 203 99 3 23 225 16 193 9.48e-38 134
MS.gene54142.t1 MTR_8g063550 40.698 172 86 3 22 192 7 163 1.49e-37 136
MS.gene54142.t1 MTR_3g096140 40.116 172 87 3 22 192 8 164 2.78e-37 134
MS.gene54142.t1 MTR_1g097300 48.855 131 62 2 22 151 20 146 3.00e-37 140
MS.gene54142.t1 MTR_1g069805 36.681 229 115 8 23 248 12 213 3.16e-37 134
MS.gene54142.t1 MTR_8g063550 40.698 172 86 3 22 192 7 163 3.17e-37 138
MS.gene54142.t1 MTR_5g069030 43.713 167 77 5 20 185 25 175 3.33e-37 140
MS.gene54142.t1 MTR_8g063550 40.698 172 86 3 22 192 7 163 8.82e-37 136
MS.gene54142.t1 MTR_1g090720 43.636 165 83 3 23 186 44 199 8.87e-37 137
MS.gene54142.t1 MTR_2g086880 41.935 155 79 3 22 169 19 169 1.13e-36 138
MS.gene54142.t1 MTR_3g096140 40.116 172 87 3 22 192 8 164 1.31e-36 134
MS.gene54142.t1 MTR_3g116070 49.242 132 63 3 23 153 25 153 1.50e-36 134
MS.gene54142.t1 MTR_2g086880 41.935 155 79 3 22 169 19 169 1.59e-36 137
MS.gene54142.t1 MTR_3g093050 41.011 178 88 5 10 186 12 173 1.86e-36 137
MS.gene54142.t1 MTR_3g093050 41.011 178 88 5 10 186 12 173 2.46e-36 137
MS.gene54142.t1 MTR_8g093580 39.535 172 88 3 22 192 7 163 3.09e-36 136
MS.gene54142.t1 MTR_3g093040 39.881 168 84 5 20 186 108 259 2.02e-34 127
MS.gene54142.t1 MTR_7g097090 41.615 161 76 3 23 183 12 154 3.93e-34 126
MS.gene54142.t1 MTR_3g098810 46.565 131 67 1 23 153 16 143 1.62e-33 121
MS.gene54142.t1 MTR_3g070040 39.053 169 87 4 25 192 12 165 3.64e-33 125
MS.gene54142.t1 MTR_8g023840 47.368 133 64 5 19 149 10 138 2.42e-32 124
MS.gene54142.t1 MTR_4g052620 40.838 191 94 8 18 203 2 178 7.65e-32 119
MS.gene54142.t1 MTR_8g023860 45.522 134 67 5 18 149 10 139 2.76e-29 116
MS.gene54142.t1 MTR_7g105170 34.359 195 110 8 18 207 2 183 2.07e-28 110
MS.gene54142.t1 MTR_2g086690 35.052 194 108 6 23 211 6 186 5.80e-28 108
MS.gene54142.t1 MTR_8g023900 36.313 179 94 6 9 185 1 161 6.39e-27 110
MS.gene54142.t1 MTR_8g023900 38.415 164 80 5 24 185 196 340 1.90e-26 108
MS.gene54142.t1 MTR_3g096140 36.306 157 84 3 37 192 2 143 1.20e-26 107
MS.gene54142.t1 MTR_8g094580 40.559 143 73 4 74 216 5 135 3.01e-25 101
MS.gene54142.t1 MTR_4g094302 32.934 167 90 5 23 186 13 160 1.20e-24 98.6
MS.gene54142.t1 MTR_8g023930 34.286 210 108 8 18 225 22 203 1.53e-24 103
MS.gene54142.t1 MTR_4g094302 37.879 132 65 4 23 151 13 130 2.50e-23 94.4
MS.gene54142.t1 MTR_7g070140 50.000 80 38 1 75 154 17 94 2.03e-19 83.2
MS.gene54142.t1 MTR_8g023880 33.690 187 85 9 24 194 10 173 8.98e-19 84.7
MS.gene54142.t1 MTR_7g083330 34.756 164 88 8 9 164 3 155 1.73e-18 82.0
MS.gene54142.t1 MTR_8g093790 30.675 163 77 7 23 185 12 138 2.32e-17 79.0
MS.gene54142.t1 MTR_7g083370 33.333 135 80 6 17 149 7 133 7.99e-17 76.3
MS.gene54142.t1 MTR_1g087190 64.583 48 16 1 23 69 7 54 1.85e-16 72.8
MS.gene54142.t1 MTR_7g083360 34.286 140 84 5 19 156 7 140 3.33e-16 75.1
MS.gene54142.t1 MTR_3g096400 29.940 167 97 6 23 184 9 160 4.08e-16 75.9
MS.gene54142.t1 MTR_7g070150 41.892 74 27 2 121 192 7 66 6.66e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54142.t1 AT2G43000 65.829 199 50 5 16 211 13 196 1.42e-85 258
MS.gene54142.t1 AT3G12910 47.973 296 132 9 16 304 16 296 4.02e-82 251
MS.gene54142.t1 AT1G26870 45.486 288 126 7 18 305 13 269 2.45e-70 224
MS.gene54142.t1 AT5G39820 59.777 179 57 4 18 185 17 191 1.51e-69 219
MS.gene54142.t1 AT3G04070 50.303 165 76 3 23 186 12 171 6.52e-54 179
MS.gene54142.t1 AT3G04070 48.023 177 78 4 23 186 12 187 9.19e-53 177
MS.gene54142.t1 AT2G02450 51.829 164 62 4 22 185 52 198 1.88e-51 174
MS.gene54142.t1 AT1G61110 49.444 180 76 4 23 196 18 188 2.00e-51 172
MS.gene54142.t1 AT2G02450 51.829 164 62 4 22 185 52 198 2.39e-51 174
MS.gene54142.t1 AT1G69490 50.920 163 68 3 23 185 11 161 1.25e-50 169
MS.gene54142.t1 AT1G01720 40.154 259 130 8 23 278 9 245 1.15e-49 167
MS.gene54142.t1 AT1G12260 37.786 262 131 7 20 269 7 248 2.97e-49 167
MS.gene54142.t1 AT5G08790 45.098 204 91 8 24 226 10 193 1.37e-48 164
MS.gene54142.t1 AT1G12260 46.067 178 76 4 20 195 7 166 3.64e-48 166
MS.gene54142.t1 AT1G52890 49.714 175 68 4 23 195 16 172 6.06e-48 163
MS.gene54142.t1 AT4G27410 48.864 176 73 5 23 197 16 175 8.06e-48 162
MS.gene54142.t1 AT2G43000 64.885 131 29 4 84 211 2 118 1.30e-47 159
MS.gene54142.t1 AT3G15500 50.292 171 65 4 23 191 16 168 1.41e-47 162
MS.gene54142.t1 AT5G61430 44.920 187 84 5 19 201 15 186 3.87e-47 162
MS.gene54142.t1 AT5G07680 35.273 275 152 7 19 288 2 255 5.81e-47 160
MS.gene54142.t1 AT3G15510 47.059 170 79 4 25 190 21 183 6.14e-47 162
MS.gene54142.t1 AT5G07680 35.125 279 155 7 16 288 11 269 6.18e-47 161
MS.gene54142.t1 AT5G63790 45.312 192 87 7 24 215 53 226 1.07e-46 160
MS.gene54142.t1 AT5G63790 45.312 192 87 7 24 215 63 236 1.14e-46 160
MS.gene54142.t1 AT5G62380 45.238 168 73 3 23 188 9 159 2.67e-46 160
MS.gene54142.t1 AT5G62380 45.238 168 73 3 23 188 9 159 2.67e-46 160
MS.gene54142.t1 AT3G17730 45.833 168 69 4 23 186 8 157 3.26e-46 156
MS.gene54142.t1 AT5G13180 45.946 185 81 4 9 192 1 167 5.30e-46 156
MS.gene54142.t1 AT1G77450 47.429 175 78 5 23 197 12 172 9.01e-46 155
MS.gene54142.t1 AT3G03200 43.915 189 85 5 23 210 8 176 1.33e-45 161
MS.gene54142.t1 AT1G71930 38.189 254 116 8 23 262 11 237 3.20e-45 156
MS.gene54142.t1 AT1G71930 38.189 254 116 8 23 262 11 237 3.20e-45 156
MS.gene54142.t1 AT1G65910 45.902 183 79 5 23 203 8 172 3.25e-45 162
MS.gene54142.t1 AT3G61910 35.887 248 143 6 23 260 13 254 3.90e-45 156
MS.gene54142.t1 AT1G62700 45.614 171 73 4 20 188 7 159 4.34e-45 157
MS.gene54142.t1 AT1G62700 45.614 171 73 4 20 188 7 159 4.34e-45 157
MS.gene54142.t1 AT2G18060 46.023 176 74 5 20 192 9 166 7.24e-45 156
MS.gene54142.t1 AT2G18060 46.023 176 74 5 20 192 9 166 7.24e-45 156
MS.gene54142.t1 AT4G36160 45.455 176 76 4 12 185 2 159 8.57e-45 156
MS.gene54142.t1 AT4G36160 45.455 176 76 4 12 185 2 159 8.57e-45 156
MS.gene54142.t1 AT4G36160 45.455 176 76 4 12 185 6 163 8.86e-45 157
MS.gene54142.t1 AT4G27410 44.000 200 80 6 23 205 16 200 9.64e-45 155
MS.gene54142.t1 AT5G39610 45.304 181 84 4 12 191 10 176 1.45e-44 153
MS.gene54142.t1 AT5G17260 44.253 174 74 4 23 191 8 163 2.47e-44 157
MS.gene54142.t1 AT5G18270 47.929 169 72 5 19 186 20 173 4.06e-44 154
MS.gene54142.t1 AT3G04060 50.000 170 69 7 19 187 19 173 4.18e-44 154
MS.gene54142.t1 AT2G33480 47.590 166 68 4 23 188 17 163 9.27e-44 151
MS.gene54142.t1 AT2G46770 43.713 167 86 3 23 185 18 180 1.25e-43 153
MS.gene54142.t1 AT2G33480 47.590 166 66 4 23 188 17 161 1.82e-43 150
MS.gene54142.t1 AT5G18270 47.337 169 73 5 19 186 20 173 1.82e-43 152
MS.gene54142.t1 AT3G12977 38.723 235 107 9 23 254 20 220 2.10e-43 150
MS.gene54142.t1 AT1G52880 51.220 164 76 3 25 188 21 180 2.90e-43 151
MS.gene54142.t1 AT2G17040 44.706 170 76 4 19 188 4 155 3.25e-43 150
MS.gene54142.t1 AT1G54330 45.783 166 71 3 23 187 8 155 4.35e-43 150
MS.gene54142.t1 AT3G18400 44.571 175 79 5 17 191 2 158 8.39e-43 150
MS.gene54142.t1 AT5G66300 38.785 214 107 6 23 228 14 211 1.12e-42 149
MS.gene54142.t1 AT1G76420 44.767 172 77 5 23 193 24 178 2.73e-42 149
MS.gene54142.t1 AT3G10500 45.614 171 77 4 23 192 11 166 7.65e-42 152
MS.gene54142.t1 AT3G29035 49.045 157 72 4 14 168 16 166 1.31e-41 147
MS.gene54142.t1 AT2G24430 43.182 176 84 5 16 191 12 171 2.52e-41 146
MS.gene54142.t1 AT2G24430 43.182 176 84 5 16 191 12 171 2.52e-41 146
MS.gene54142.t1 AT1G32510 40.556 180 93 3 23 198 8 177 4.12e-41 144
MS.gene54142.t1 AT5G46590 50.000 130 61 2 23 151 8 134 4.36e-41 144
MS.gene54142.t1 AT1G79580 43.030 165 75 4 23 185 19 166 4.56e-41 147
MS.gene54142.t1 AT1G79580 43.030 165 75 4 23 185 19 166 4.56e-41 147
MS.gene54142.t1 AT1G79580 43.030 165 75 4 23 185 19 166 4.56e-41 147
MS.gene54142.t1 AT1G79580 43.030 165 75 4 23 185 19 166 4.56e-41 147
MS.gene54142.t1 AT1G79580 43.030 165 75 4 23 185 19 166 4.56e-41 147
MS.gene54142.t1 AT5G46590 50.000 130 61 2 23 151 8 134 7.87e-41 144
MS.gene54142.t1 AT4G17980 44.848 165 79 4 23 186 8 161 1.21e-40 142
MS.gene54142.t1 AT3G15170 42.541 181 90 5 16 194 15 183 1.23e-40 144
MS.gene54142.t1 AT4G17980 44.848 165 79 4 23 186 8 161 2.50e-40 142
MS.gene54142.t1 AT5G04410 44.444 171 79 3 23 192 11 166 3.31e-40 148
MS.gene54142.t1 AT4G10350 39.899 198 87 6 20 215 9 176 5.87e-40 143
MS.gene54142.t1 AT1G32770 41.618 173 88 4 23 190 18 182 5.91e-40 143
MS.gene54142.t1 AT3G10480 43.636 165 77 4 23 186 29 178 6.94e-40 145
MS.gene54142.t1 AT1G56010 44.571 175 80 5 23 193 21 182 7.42e-40 142
MS.gene54142.t1 AT3G10480 43.636 165 78 4 23 186 29 179 8.15e-40 145
MS.gene54142.t1 AT1G33280 43.030 165 74 4 23 185 10 156 1.61e-38 138
MS.gene54142.t1 AT1G34180 42.105 171 83 4 23 192 18 173 2.08e-38 141
MS.gene54142.t1 AT3G10490 41.818 165 81 5 23 186 29 179 3.53e-38 135
MS.gene54142.t1 AT1G34190 42.690 171 82 4 23 192 18 173 3.93e-38 142
MS.gene54142.t1 AT2G27300 46.094 128 65 1 22 149 15 138 7.48e-38 137
MS.gene54142.t1 AT1G34180 42.105 171 83 4 23 192 18 173 7.69e-38 141
MS.gene54142.t1 AT3G10490 41.566 166 80 5 23 186 29 179 2.50e-37 138
MS.gene54142.t1 AT5G09330 39.181 171 88 3 23 192 8 163 4.60e-37 138
MS.gene54142.t1 AT5G09330 39.181 171 88 3 23 192 8 163 4.60e-37 138
MS.gene54142.t1 AT5G09330 39.181 171 88 3 23 192 8 163 4.60e-37 138
MS.gene54142.t1 AT5G09330 39.181 171 88 3 23 192 8 163 4.60e-37 138
MS.gene54142.t1 AT5G09330 39.181 171 88 3 23 192 8 163 4.60e-37 138
MS.gene54142.t1 AT4G35580 44.379 169 77 6 18 185 7 159 5.24e-37 139
MS.gene54142.t1 AT4G35580 44.379 169 77 6 18 185 7 159 5.29e-37 139
MS.gene54142.t1 AT4G35580 44.379 169 77 6 18 185 7 159 5.39e-37 138
MS.gene54142.t1 AT3G44290 42.969 128 69 1 22 149 15 138 1.05e-36 131
MS.gene54142.t1 AT5G53950 42.222 180 91 5 15 194 12 178 1.10e-36 135
MS.gene54142.t1 AT5G22290 43.750 128 68 1 22 149 22 145 3.63e-36 133
MS.gene54142.t1 AT3G44290 42.969 128 69 1 22 149 15 138 7.24e-36 132
MS.gene54142.t1 AT1G33060 48.485 132 62 3 20 150 24 150 7.55e-36 136
MS.gene54142.t1 AT1G33060 48.485 132 62 3 20 150 24 150 7.85e-36 136
MS.gene54142.t1 AT1G34180 39.344 183 83 4 23 192 18 185 9.09e-36 134
MS.gene54142.t1 AT1G34180 39.344 183 83 4 23 192 18 185 2.99e-35 134
MS.gene54142.t1 AT5G64060 39.394 165 84 3 23 186 8 157 3.71e-35 130
MS.gene54142.t1 AT3G10480 36.364 198 78 4 23 186 29 212 2.70e-34 131
MS.gene54142.t1 AT3G49530 39.205 176 91 5 11 185 4 164 6.44e-34 128
MS.gene54142.t1 AT3G49530 39.205 176 91 5 11 185 4 164 2.01e-33 128
MS.gene54142.t1 AT5G24590 48.855 131 62 3 22 150 13 140 2.03e-33 127
MS.gene54142.t1 AT4G28530 41.111 180 70 6 23 185 12 172 3.88e-31 120
MS.gene54142.t1 AT5G04395 39.333 150 77 3 14 151 22 169 8.52e-31 114
MS.gene54142.t1 AT5G61430 43.939 132 57 3 74 201 5 123 2.23e-29 113
MS.gene54142.t1 AT3G12977 38.462 182 76 8 76 254 19 167 1.05e-28 110
MS.gene54142.t1 AT5G64530 34.104 173 96 6 23 192 5 162 3.33e-28 108
MS.gene54142.t1 AT3G44350 33.469 245 133 11 24 261 8 229 3.88e-28 109
MS.gene54142.t1 AT5G22380 30.252 238 140 7 18 243 3 226 4.08e-28 109
MS.gene54142.t1 AT1G32870 39.306 173 85 5 23 192 12 167 7.70e-27 110
MS.gene54142.t1 AT1G32870 39.306 173 85 5 23 192 12 167 7.87e-27 110
MS.gene54142.t1 AT1G32870 39.306 173 85 5 23 192 48 203 1.04e-26 110
MS.gene54142.t1 AT5G64530 40.000 130 63 4 23 152 5 119 9.69e-26 100
MS.gene54142.t1 AT3G44350 39.437 142 75 4 24 159 8 144 9.67e-25 98.2
MS.gene54142.t1 AT4G01550 41.667 132 74 3 22 151 5 135 2.94e-24 102
MS.gene54142.t1 AT1G56010 43.802 121 53 3 76 193 7 115 6.03e-24 98.6
MS.gene54142.t1 AT2G33480 44.348 115 49 3 74 188 7 106 5.23e-23 95.1
MS.gene54142.t1 AT4G01540 42.105 133 73 4 22 151 5 136 5.82e-23 98.2
MS.gene54142.t1 AT4G01540 42.105 133 73 4 22 151 5 136 6.20e-23 98.6
MS.gene54142.t1 AT4G01540 42.105 133 73 4 22 151 5 136 7.80e-23 98.2
MS.gene54142.t1 AT4G01540 42.105 133 73 4 22 151 5 136 7.86e-23 98.6
MS.gene54142.t1 AT4G01520 40.458 131 74 4 24 151 7 136 8.49e-23 96.3
MS.gene54142.t1 AT4G10350 38.298 141 58 4 75 215 18 129 2.87e-21 92.0
MS.gene54142.t1 AT1G02230 40.602 133 72 5 24 153 6 134 7.95e-20 89.0
MS.gene54142.t1 AT1G02250 40.310 129 70 5 24 149 6 130 2.69e-19 87.4
MS.gene54142.t1 AT3G04420 38.760 129 72 4 24 149 6 130 1.31e-18 84.7
MS.gene54142.t1 AT3G04420 38.760 129 72 4 24 149 6 130 3.50e-18 84.0
MS.gene54142.t1 AT4G28530 43.925 107 41 3 23 112 12 116 9.16e-18 82.4
MS.gene54142.t1 AT5G14000 30.323 155 98 4 14 165 7 154 8.06e-17 76.6
MS.gene54142.t1 AT5G50820 35.556 135 72 5 23 154 19 141 1.51e-16 77.0
MS.gene54142.t1 AT2G18060 42.553 94 36 3 100 192 2 78 3.16e-16 77.8
MS.gene54142.t1 AT5G14000 30.519 154 97 4 14 164 7 153 6.85e-16 75.5
MS.gene54142.t1 AT1G02220 37.209 129 71 5 24 149 6 127 1.99e-14 73.6
MS.gene54142.t1 AT1G01010 36.567 134 74 6 24 149 6 136 1.43e-13 71.2
MS.gene54142.t1 AT3G56530 30.882 136 88 2 23 156 54 185 5.31e-13 68.9
MS.gene54142.t1 AT3G10490 36.559 93 43 4 95 186 2 79 4.90e-12 66.2
MS.gene54142.t1 AT3G10490 36.559 93 43 4 95 186 2 79 4.90e-12 66.2

Find 48 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTATTATCATTTGATAAT+TGG 0.114896 2.2:-23339756 MS.gene54142:CDS
CAACAAACATATATCAATTT+TGG 0.187147 2.2:-23339949 MS.gene54142:CDS
TATACGACATGCAGGAAATT+TGG 0.191903 2.2:-23340107 MS.gene54142:intron
GAGTCACTGGCTCTGGATTC+TGG 0.244802 2.2:-23340560 MS.gene54142:CDS
GTTATTATCATTTGATAATT+GGG 0.315345 2.2:-23339755 MS.gene54142:CDS
CATTAATTTGTTGAGGTTGA+TGG 0.315956 2.2:+23339821 None:intergenic
CCAGAGCCAGTGACTCTATT+TGG 0.333205 2.2:+23340567 None:intergenic
GATGATGATGTTCCACTTCC+TGG 0.336439 2.2:-23341516 MS.gene54142:CDS
ATGCATCATCCAATCAGTTT+TGG 0.355638 2.2:+23340428 None:intergenic
TTGATAAGATCAATAGCAAT+AGG 0.382635 2.2:+23341426 None:intergenic
GCCAAAGAGGAAGAAAATAT+AGG 0.410785 2.2:-23340602 MS.gene54142:CDS
TAGTAGAATGAATAGCAATA+TGG 0.412099 2.2:-23339986 MS.gene54142:CDS
CCAAATAGAGTCACTGGCTC+TGG 0.412912 2.2:-23340567 MS.gene54142:CDS
TTCATGAATGGTTTGACGCT+TGG 0.438624 2.2:+23340014 None:intergenic
ATATCTACAAATATGATCCT+TGG 0.441210 2.2:-23341395 MS.gene54142:CDS
TCTGGATTCTGGAAAGCAAC+TGG 0.467422 2.2:-23340549 MS.gene54142:CDS
TTTGATAATTGGGATGAGCT+TGG 0.467447 2.2:-23339745 MS.gene54142:CDS
GACAAAGCAATATACTCAAA+TGG 0.469362 2.2:-23340522 MS.gene54142:CDS
GGTTTGACGCTTGGTAGCTA+AGG 0.470329 2.2:+23340023 None:intergenic
TATCTACAAATATGATCCTT+GGG 0.485955 2.2:-23341394 MS.gene54142:CDS
AGAATTACTATTTACAAACT+AGG 0.491310 2.2:+23339694 None:intergenic
GTAAAGGCACCAAAACTGAT+TGG 0.491861 2.2:-23340437 MS.gene54142:CDS
GTTTACTATCGTGGTAGTGC+TGG 0.494944 2.2:-23340459 MS.gene54142:CDS
AAATATACCAGGAGCAGAGA+AGG 0.498611 2.2:-23340640 MS.gene54142:CDS
TAACCTTCCTTCTCTGCTCC+TGG 0.500000 2.2:+23340633 None:intergenic
CTTATTGTAGAATTATTGAC+TGG 0.522394 2.2:+23339892 None:intergenic
TGGAATCTAAATCCAGGAAG+TGG 0.522801 2.2:+23341504 None:intergenic
CCTCATTGTGATGATGCTCA+TGG 0.528975 2.2:+23339920 None:intergenic
GTAACAAGTTCTTCATCTGT+AGG 0.530457 2.2:+23341480 None:intergenic
ATATACTCAAATGGAGGAGA+AGG 0.533042 2.2:-23340513 MS.gene54142:CDS
AAAACACTTGTTTACTATCG+TGG 0.541680 2.2:-23340468 MS.gene54142:CDS
CAAGTTCTTCATCTGTAGGA+TGG 0.549129 2.2:+23341484 None:intergenic
TATCGTGGTAGTGCTGGTAA+AGG 0.553822 2.2:-23340453 MS.gene54142:CDS
GTTTGACGCTTGGTAGCTAA+GGG 0.553957 2.2:+23340024 None:intergenic
GTAGGATGGAATCTAAATCC+AGG 0.560591 2.2:+23341498 None:intergenic
GTTAGACCAAATAGAGTCAC+TGG 0.561770 2.2:-23340573 MS.gene54142:CDS
GACATACTTGGAAGATCCCA+AGG 0.569277 2.2:+23341378 None:intergenic
ATTCTACAATAAGTGATCAA+AGG 0.581662 2.2:-23339882 MS.gene54142:CDS
GGAGAAGGAAATGATTGTGT+TGG 0.583944 2.2:-23340498 MS.gene54142:CDS
ATCAGCATCATTCTTAGCAT+AGG 0.603706 2.2:+23340362 None:intergenic
AGAGAAGATGGGTATGAACG+AGG 0.606606 2.2:-23341571 None:intergenic
ATACCAGGAGCAGAGAAGGA+AGG 0.629648 2.2:-23340636 MS.gene54142:CDS
TGTGTTACATTAATTTGTTG+AGG 0.634779 2.2:+23339814 None:intergenic
TTAAAAGAAATGTATCACAA+AGG 0.637410 2.2:-23340068 MS.gene54142:CDS
AAAGCAATATACTCAAATGG+AGG 0.648134 2.2:-23340519 MS.gene54142:CDS
TATGCAGAAGTAAATATACC+AGG 0.662988 2.2:-23340651 MS.gene54142:intron
CCATGAGCATCATCACAATG+AGG 0.679725 2.2:-23339920 MS.gene54142:CDS
TATGAACGAGGATTTCAACA+TGG 0.688452 2.2:-23341559 MS.gene54142:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAAAAAATAAATAAATA+GGG - chr2.2:23340049-23340068 MS.gene54142:CDS 0.0%
!! CAAAAAAAGAATAAAAAAAA+AGG + chr2.2:23339930-23339949 None:intergenic 10.0%
!! CTATTGTAAAAATAAGAATA+GGG - chr2.2:23340023-23340042 MS.gene54142:CDS 15.0%
!! TATTGTAAAAATAAGAATAG+GGG - chr2.2:23340024-23340043 MS.gene54142:CDS 15.0%
!! TCTATTGTAAAAATAAGAAT+AGG - chr2.2:23340022-23340041 MS.gene54142:CDS 15.0%
!!! AGTTATTATCATTTGATAAT+TGG - chr2.2:23341513-23341532 MS.gene54142:CDS 15.0%
!!! GTTATTATCATTTGATAATT+GGG - chr2.2:23341514-23341533 MS.gene54142:CDS 15.0%
!!! TTATTTTTCCTTTTCATTAT+AGG - chr2.2:23340565-23340584 MS.gene54142:CDS 15.0%
!! ACATTATAGCTTATATATAG+AGG - chr2.2:23340368-23340387 MS.gene54142:CDS 20.0%
!! CTTGTGTTAATTAAATTAGA+TGG + chr2.2:23340078-23340097 None:intergenic 20.0%
!! TATAGTTACCTATAATGAAA+AGG + chr2.2:23340576-23340595 None:intergenic 20.0%
!! TGAAAAGGAAAAATAAAGAA+AGG + chr2.2:23340561-23340580 None:intergenic 20.0%
!! TTAAAAGAAATGTATCACAA+AGG - chr2.2:23341201-23341220 MS.gene54142:intron 20.0%
!!! CAACAAACATATATCAATTT+TGG - chr2.2:23341320-23341339 MS.gene54142:intron 20.0%
!!! TAACACAATCTTCAAATTTT+TGG - chr2.2:23341471-23341490 MS.gene54142:CDS 20.0%
! ATAAATTAGAGAGACATACT+TGG + chr2.2:23339906-23339925 None:intergenic 25.0%
! ATATCTACAAATATGATCCT+TGG - chr2.2:23339874-23339893 MS.gene54142:CDS 25.0%
! ATCATTAGAACAAGTTTAAG+AGG + chr2.2:23341137-23341156 None:intergenic 25.0%
! ATTCTACAATAAGTGATCAA+AGG - chr2.2:23341387-23341406 MS.gene54142:CDS 25.0%
! ATTTGCACTATGTAAAAAAG+TGG + chr2.2:23340528-23340547 None:intergenic 25.0%
! CTTATTGTAGAATTATTGAC+TGG + chr2.2:23341380-23341399 None:intergenic 25.0%
! TAGTAGAATGAATAGCAATA+TGG - chr2.2:23341283-23341302 MS.gene54142:intron 25.0%
! TATCTACAAATATGATCCTT+GGG - chr2.2:23339875-23339894 MS.gene54142:CDS 25.0%
! TTGATAAGATCAATAGCAAT+AGG + chr2.2:23339846-23339865 None:intergenic 25.0%
! TTTAATTAACACAAGCTAGA+AGG - chr2.2:23340083-23340102 MS.gene54142:CDS 25.0%
!!! AATGTTTGTTTTAGCATCAA+TGG + chr2.2:23340886-23340905 None:intergenic 25.0%
!!! ACTATTACTTTTGTAGTAGA+TGG + chr2.2:23340347-23340366 None:intergenic 25.0%
!!! TGTGTTACATTAATTTGTTG+AGG + chr2.2:23341458-23341477 None:intergenic 25.0%
AAAACACTTGTTTACTATCG+TGG - chr2.2:23340801-23340820 MS.gene54142:intron 30.0%
AAAGCAATATACTCAAATGG+AGG - chr2.2:23340750-23340769 MS.gene54142:intron 30.0%
ATAGATGGTTTGATCGATTA+TGG - chr2.2:23340146-23340165 MS.gene54142:intron 30.0%
CTTAGCTAGCAATATATTCA+AGG - chr2.2:23340180-23340199 MS.gene54142:intron 30.0%
GAACAAGTTTAAGAGGAAAA+AGG + chr2.2:23341130-23341149 None:intergenic 30.0%
GACAAAGCAATATACTCAAA+TGG - chr2.2:23340747-23340766 MS.gene54142:intron 30.0%
TATGCAGAAGTAAATATACC+AGG - chr2.2:23340618-23340637 MS.gene54142:CDS 30.0%
TATTTGCATGCAGAAATAGA+TGG - chr2.2:23340131-23340150 MS.gene54142:intron 30.0%
TGTATCACAAAGGAAAAACA+TGG - chr2.2:23341211-23341230 MS.gene54142:intron 30.0%
! TCCTATATTTTCTTCCTCTT+TGG + chr2.2:23340671-23340690 None:intergenic 30.0%
! TCTACTACTCTTTTCATGAA+TGG + chr2.2:23341270-23341289 None:intergenic 30.0%
!! CATTAATTTGTTGAGGTTGA+TGG + chr2.2:23341451-23341470 None:intergenic 30.0%
ATATACTCAAATGGAGGAGA+AGG - chr2.2:23340756-23340775 MS.gene54142:intron 35.0%
ATCAGCATCATTCTTAGCAT+AGG + chr2.2:23340910-23340929 None:intergenic 35.0%
GCCAAAGAGGAAGAAAATAT+AGG - chr2.2:23340667-23340686 MS.gene54142:intron 35.0%
GTAACAAGTTCTTCATCTGT+AGG + chr2.2:23339792-23339811 None:intergenic 35.0%
TATACGACATGCAGGAAATT+TGG - chr2.2:23341162-23341181 MS.gene54142:intron 35.0%
TATGAACGAGGATTTCAACA+TGG - chr2.2:23339710-23339729 MS.gene54142:CDS 35.0%
! ATGCATCATCCAATCAGTTT+TGG + chr2.2:23340844-23340863 None:intergenic 35.0%
! GATTTTTCTATACGACATGC+AGG - chr2.2:23341154-23341173 MS.gene54142:intron 35.0%
! TTTGATAATTGGGATGAGCT+TGG - chr2.2:23341524-23341543 MS.gene54142:CDS 35.0%
!! GTTTTAGCATCAATGGTTGA+TGG + chr2.2:23340879-23340898 None:intergenic 35.0%
!!! GGTTACTTTTTTTGCCAAAG+AGG - chr2.2:23340654-23340673 MS.gene54142:intron 35.0%
AAATATACCAGGAGCAGAGA+AGG - chr2.2:23340629-23340648 MS.gene54142:CDS 40.0%
CAAGTTCTTCATCTGTAGGA+TGG + chr2.2:23339788-23339807 None:intergenic 40.0%
GGAGAAGGAAATGATTGTGT+TGG - chr2.2:23340771-23340790 MS.gene54142:intron 40.0%
GTAGGATGGAATCTAAATCC+AGG + chr2.2:23339774-23339793 None:intergenic 40.0%
GTTAGACCAAATAGAGTCAC+TGG - chr2.2:23340696-23340715 MS.gene54142:intron 40.0%
TGGAATCTAAATCCAGGAAG+TGG + chr2.2:23339768-23339787 None:intergenic 40.0%
TTCATGAATGGTTTGACGCT+TGG + chr2.2:23341258-23341277 None:intergenic 40.0%
!! GTAAAGGCACCAAAACTGAT+TGG - chr2.2:23340832-23340851 MS.gene54142:intron 40.0%
CCATGAGCATCATCACAATG+AGG - chr2.2:23341349-23341368 MS.gene54142:intron 45.0%
GACATACTTGGAAGATCCCA+AGG + chr2.2:23339894-23339913 None:intergenic 45.0%
! CCTCATTGTGATGATGCTCA+TGG + chr2.2:23341352-23341371 None:intergenic 45.0%
! GATGATGATGTTCCACTTCC+TGG - chr2.2:23339753-23339772 MS.gene54142:CDS 45.0%
! GTTTACTATCGTGGTAGTGC+TGG - chr2.2:23340810-23340829 MS.gene54142:intron 45.0%
! GTTTGACGCTTGGTAGCTAA+GGG + chr2.2:23341248-23341267 None:intergenic 45.0%
! TCTGGATTCTGGAAAGCAAC+TGG - chr2.2:23340720-23340739 MS.gene54142:intron 45.0%
!! TATCGTGGTAGTGCTGGTAA+AGG - chr2.2:23340816-23340835 MS.gene54142:intron 45.0%
!! AATTAAAGAAATATAATATT+CGG - chr2.2:23340459-23340478 MS.gene54142:CDS 5.0%
!! ATAAAAAATTTGTAAAAATT+TGG + chr2.2:23340973-23340992 None:intergenic 5.0%
!! GTAATAAAAAATAAATAAAT+AGG - chr2.2:23340048-23340067 MS.gene54142:CDS 5.0%
ATACCAGGAGCAGAGAAGGA+AGG - chr2.2:23340633-23340652 MS.gene54142:CDS 50.0%
CCAGAGCCAGTGACTCTATT+TGG + chr2.2:23340705-23340724 None:intergenic 50.0%
TAACCTTCCTTCTCTGCTCC+TGG + chr2.2:23340639-23340658 None:intergenic 50.0%
! GGTTTGACGCTTGGTAGCTA+AGG + chr2.2:23341249-23341268 None:intergenic 50.0%
!! CCAAATAGAGTCACTGGCTC+TGG - chr2.2:23340702-23340721 MS.gene54142:intron 50.0%
!! GAGTCACTGGCTCTGGATTC+TGG - chr2.2:23340709-23340728 MS.gene54142:intron 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 23339705 23341586 23339705 ID=MS.gene54142
chr2.2 mRNA 23339705 23341586 23339705 ID=MS.gene54142.t1;Parent=MS.gene54142
chr2.2 exon 23341385 23341586 23341385 ID=MS.gene54142.t1.exon1;Parent=MS.gene54142.t1
chr2.2 CDS 23341385 23341586 23341385 ID=cds.MS.gene54142.t1;Parent=MS.gene54142.t1
chr2.2 exon 23340347 23340666 23340347 ID=MS.gene54142.t1.exon2;Parent=MS.gene54142.t1
chr2.2 CDS 23340347 23340666 23340347 ID=cds.MS.gene54142.t1;Parent=MS.gene54142.t1
chr2.2 exon 23339705 23340115 23339705 ID=MS.gene54142.t1.exon3;Parent=MS.gene54142.t1
chr2.2 CDS 23339705 23340115 23339705 ID=cds.MS.gene54142.t1;Parent=MS.gene54142.t1
Gene Sequence

>MS.gene54142

ATGGGTATGAACGAGGATTTCAACATGGATAATGAATATGTCGCAGATGATGATGATGTTCCACTTCCTGGATTTAGATTCCATCCTACAGATGAAGAACTTGTTACTTTTTATCTTAGAAGAAAACTTGACAAGAAACCTATTGCTATTGATCTTATCAAACAAATTGATATCTACAAATATGATCCTTGGGATCTTCCAAGTATGTCTCTCTAATTTATACCTTTTTTTTTATTCTTTTTTTGTATTTATTGATATTGTTCTATCAGTTTATCTTACAAGTATTGAAGATTAATTAATTCTTACAAGATGAAATCTCTATTGTAAAAATAAGAATAGGGGTGTAATAAAAAATAAATAAATAGGGTTTCCATCTAATTTAATTAACACAAGCTAGAAGGAAGAATGAAAAAAAAATTGAGATGATATTTGCATGCAGAAATAGATGGTTTGATCGATTATGGCATACGTATATCTTAGCTAGCAATATATTCAAGGTTATTTGTTGTAGTCTTTATATTCTATATTTCAGAAGATTTTGATTTTTTTTATAAAATAAAGTATTCTGACGAATATAAATTAGCAATAAAAATTTAAAAATCAAAACATGAAATTCATTTCTAATTTCATCATGAGCATCCATCTACTACAAAAGTAATAGTAACATTATAGCTTATATATAGAGGATTTTGTGCAGACATGTAAAAAGAAGAAAGTCATAGAGTAACAATATAGCTTAATATTTTCTTTAACTAATTAAAGAAATATAATATTCGGTGTAAAATTTTATGCAACAACTACACTGAAAATATATTCTAATCCACTTTTTTACATAGTGCAAATTTTGTTTTGTCCTTTCTTTATTTTTCCTTTTCATTATAGGTAACTATACTAATTGCTTAGTTACATGCATTATGCAGAAGTAAATATACCAGGAGCAGAGAAGGAAGGTTACTTTTTTTGCCAAAGAGGAAGAAAATATAGGAACAGCGTTAGACCAAATAGAGTCACTGGCTCTGGATTCTGGAAAGCAACTGGAATAGACAAAGCAATATACTCAAATGGAGGAGAAGGAAATGATTGTGTTGGACTCAAAAAAACACTTGTTTACTATCGTGGTAGTGCTGGTAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCATCAACCATTGATGCTAAAACAAACATTTCCTATGCTAAGAATGATGCTGATTGTGCTCATGAAGCTGTAAATAACTTACATATGAGCTATACCAAATTTTTACAAATTTTTTATGCTACAATATTTGTTCACAAGCACATTATTAATTTCTCTCTTACTTTTCAGTCACATTTTTCTTGATATGTACATTTGCACTAGAAAATAAATTATCTAGCAATGAGAGTTTCATATTATGATTCTTAGTTAAACCTTTTTCCTCTTAAACTTGTTCTAATGATTTTTCTATACGACATGCAGGAAATTTGGACATTGTGTAGAATTTTTAAAAGAAATGTATCACAAAGGAAAAACATGGTAGATGTGAAACCCTTAGCTACCAAGCGTCAAACCATTCATGAAAAGAGTAGTAGAATGAATAGCAATATGGAGTTCAACACAAATCAACAAACATATATCAATTTTGGTACAAGCCATGAGCATCATCACAATGAGGATAAACCAGTCAATAATTCTACAATAAGTGATCAAAGGAATCAATTTCATGTAGATCAATTGAGCTCTTCAGTAGACCATCAACCTCAACAAATTAATGTAACACAATCTTCAAATTTTTGGATTAAGCAAGCTGCTAATGAGTTATTATCATTTGATAATTGGGATGAGCTTGGATCAGTTGTGAACTTTGTTTCACGTTCACCTAGTTTGTAA
Protein sequence

>MS.gene54142.t1

MGMNEDFNMDNEYVADDDDVPLPGFRFHPTDEELVTFYLRRKLDKKPIAIDLIKQIDIYKYDPWDLPKVNIPGAEKEGYFFCQRGRKYRNSVRPNRVTGSGFWKATGIDKAIYSNGGEGNDCVGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSTIDAKTNISYAKNDADCAHEAEIWTLCRIFKRNVSQRKNMVDVKPLATKRQTIHEKSSRMNSNMEFNTNQQTYINFGTSHEHHHNEDKPVNNSTISDQRNQFHVDQLSSSVDHQPQQINVTQSSNFWIKQAANELLSFDNWDELGSVVNFVSRSPSL