AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54542

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54542.t1 MTR_1g008060 75.578 606 70 9 6 534 1029 1633 0.0 862
MS.gene54542.t1 MTR_1g008060 75.578 606 70 9 6 534 1038 1642 0.0 862
MS.gene54542.t1 MTR_7g117445 45.911 538 225 13 32 535 367 872 1.42e-136 417
MS.gene54542.t1 MTR_7g117445 46.197 539 220 14 32 534 367 871 5.00e-136 418
MS.gene54542.t1 MTR_7g117445 46.197 539 220 14 32 534 367 871 5.10e-136 418
MS.gene54542.t1 MTR_7g117445 45.996 537 224 13 32 534 367 871 8.36e-136 418
MS.gene54542.t1 MTR_1g069565 41.477 528 218 12 32 534 365 826 2.06e-105 337
MS.gene54542.t1 MTR_4g132540 37.266 534 212 18 29 534 373 811 1.37e-84 281
MS.gene54542.t1 MTR_1g114150 47.231 307 125 9 32 305 562 864 5.91e-67 234
MS.gene54542.t1 MTR_1g114150 47.231 307 125 9 32 305 562 864 1.53e-66 233
MS.gene54542.t1 MTR_1g114150 74.699 83 21 0 452 534 913 995 1.02e-33 137
MS.gene54542.t1 MTR_1g069565 46.906 307 128 9 32 305 365 669 2.38e-66 232
MS.gene54542.t1 MTR_1g069565 66.667 66 22 0 469 534 818 883 1.68e-22 102
MS.gene54542.t1 MTR_1g114130 45.779 308 131 9 32 305 546 851 2.33e-65 230
MS.gene54542.t1 MTR_1g114070 45.603 307 132 8 32 305 445 749 3.57e-64 226
MS.gene54542.t1 MTR_1g114070 67.470 83 27 0 452 534 787 869 2.15e-28 120
MS.gene54542.t1 MTR_5g065200 44.695 311 129 10 32 305 361 665 1.67e-61 217
MS.gene54542.t1 MTR_5g065200 71.084 83 24 0 452 534 697 779 8.80e-31 127
MS.gene54542.t1 MTR_2g024270 39.310 290 137 8 43 312 370 640 5.11e-51 187
MS.gene54542.t1 MTR_2g024270 63.855 83 30 0 452 534 682 764 1.81e-26 114
MS.gene54542.t1 MTR_5g047620 40.909 308 144 10 32 305 293 596 2.00e-50 186
MS.gene54542.t1 MTR_5g047620 71.084 83 24 0 452 534 660 742 2.73e-31 129
MS.gene54542.t1 MTR_1g083120 34.840 376 180 12 32 370 405 752 7.14e-50 185
MS.gene54542.t1 MTR_1g083120 50.649 77 34 1 452 528 777 849 3.64e-18 89.0
MS.gene54542.t1 MTR_1g083120 35.674 356 171 11 32 350 388 722 7.66e-50 184
MS.gene54542.t1 MTR_1g083120 48.780 82 38 1 452 533 760 837 2.52e-18 89.4
MS.gene54542.t1 MTR_1g083120 35.457 361 175 11 32 355 388 727 8.77e-50 184
MS.gene54542.t1 MTR_1g083120 50.649 77 34 1 452 528 760 832 3.93e-18 88.6
MS.gene54542.t1 MTR_1g083120 35.674 356 171 11 32 350 388 722 8.79e-50 184
MS.gene54542.t1 MTR_1g083120 50.649 77 34 1 452 528 760 832 3.60e-18 89.0
MS.gene54542.t1 MTR_0020s0100 42.963 270 134 11 32 287 240 503 6.84e-47 175
MS.gene54542.t1 MTR_0020s0100 68.675 83 26 0 452 534 571 653 1.11e-29 124
MS.gene54542.t1 MTR_4g091520 36.559 279 154 7 31 289 654 929 3.79e-45 171
MS.gene54542.t1 MTR_4g091520 36.559 279 154 7 31 289 724 999 4.01e-45 171
MS.gene54542.t1 MTR_4g091520 36.559 279 154 7 31 289 689 964 4.16e-45 171
MS.gene54542.t1 MTR_4g091520 36.559 279 154 7 31 289 724 999 5.05e-45 171
MS.gene54542.t1 MTR_4g091520 51.899 79 37 1 452 530 1142 1219 2.09e-19 92.8
MS.gene54542.t1 MTR_2g024140 39.643 280 118 8 32 290 245 494 1.56e-43 165
MS.gene54542.t1 MTR_2g024140 63.855 83 30 0 452 534 550 632 1.03e-24 108
MS.gene54542.t1 MTR_2g011630 34.752 282 151 8 33 289 182 455 6.20e-39 152
MS.gene54542.t1 MTR_2g011630 51.899 79 38 0 452 530 575 653 4.05e-21 97.8
MS.gene54542.t1 MTR_2g011630 34.752 282 151 8 33 289 214 487 9.20e-39 151
MS.gene54542.t1 MTR_2g011630 51.899 79 38 0 452 530 607 685 3.77e-21 98.2
MS.gene54542.t1 MTR_8g465700 48.795 166 69 4 130 280 13 177 1.11e-38 143
MS.gene54542.t1 MTR_2g011630 34.752 282 151 8 33 289 426 699 1.40e-38 151
MS.gene54542.t1 MTR_2g011630 51.899 79 38 0 452 530 819 897 4.26e-21 98.2
MS.gene54542.t1 MTR_0295s0020 54.867 113 37 3 207 306 59 170 9.96e-31 118
MS.gene54542.t1 MTR_8g465720 67.089 79 25 1 452 530 62 139 5.70e-28 110
MS.gene54542.t1 MTR_2g024240 58.586 99 38 2 207 302 152 250 9.65e-28 115
MS.gene54542.t1 MTR_2g024240 62.651 83 31 0 452 534 288 370 3.03e-27 114
MS.gene54542.t1 MTR_8g013920 60.000 75 26 2 206 279 51 122 3.58e-20 89.0
MS.gene54542.t1 MTR_8g062940 33.813 139 75 3 34 172 243 364 3.41e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54542.t1 AT4G00990 42.644 537 224 15 32 533 288 775 2.01e-121 375
MS.gene54542.t1 AT4G00990 42.697 534 222 15 32 530 288 772 6.23e-121 374
MS.gene54542.t1 AT4G00990 42.565 538 225 15 32 534 288 776 1.96e-120 375
MS.gene54542.t1 AT1G62310 42.183 339 158 12 5 318 398 723 1.89e-66 231
MS.gene54542.t1 AT1G62310 67.470 83 27 0 452 534 759 841 1.34e-29 124
MS.gene54542.t1 AT1G11950 46.099 282 117 9 32 289 404 674 1.15e-65 228
MS.gene54542.t1 AT1G11950 48.148 108 45 2 421 520 697 801 4.07e-21 98.2
MS.gene54542.t1 AT1G11950 46.099 282 117 9 32 289 404 674 2.01e-65 229
MS.gene54542.t1 AT1G11950 50.820 122 49 2 421 534 697 815 2.64e-28 120
MS.gene54542.t1 AT1G11950 46.099 282 117 9 32 289 404 674 2.01e-65 229
MS.gene54542.t1 AT1G11950 50.820 122 49 2 421 534 697 815 2.64e-28 120
MS.gene54542.t1 AT3G07610 41.581 291 139 6 44 304 429 718 1.85e-56 204
MS.gene54542.t1 AT3G07610 62.651 83 31 0 452 534 756 838 1.24e-28 121
MS.gene54542.t1 AT3G07610 41.923 260 128 5 44 281 429 687 1.80e-50 185
MS.gene54542.t1 AT3G07610 41.860 258 127 5 44 279 429 685 1.29e-49 184
MS.gene54542.t1 AT3G07610 62.651 83 31 0 452 534 778 860 1.43e-28 121
MS.gene54542.t1 AT1G09060 34.767 279 152 6 32 291 416 683 1.66e-38 151
MS.gene54542.t1 AT1G09060 41.270 126 65 5 407 528 725 845 1.16e-18 90.5
MS.gene54542.t1 AT1G09060 34.767 279 152 6 32 291 416 683 1.66e-38 151
MS.gene54542.t1 AT1G09060 41.270 126 65 5 407 528 725 845 1.16e-18 90.5
MS.gene54542.t1 AT1G09060 34.767 279 152 6 32 291 402 669 1.71e-38 151
MS.gene54542.t1 AT1G09060 41.270 126 65 5 407 528 711 831 1.17e-18 90.5
MS.gene54542.t1 AT1G09060 34.767 279 152 6 32 291 402 669 1.71e-38 151
MS.gene54542.t1 AT1G09060 41.270 126 65 5 407 528 711 831 1.17e-18 90.5
MS.gene54542.t1 AT4G21430 35.507 276 149 8 36 289 412 680 2.17e-35 142
MS.gene54542.t1 AT4G21430 47.561 82 42 1 449 530 775 855 6.06e-17 85.1

Find 118 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCTCTATTGTGTTTATTT+AGG 0.173851 1.1:+11523777 None:intergenic
CCTATTGTTGATCTTTCTTT+AGG 0.211191 1.1:-11526045 MS.gene54542:CDS
CCATAAGCAATGTATGTATT+AGG 0.213994 1.1:+11525244 None:intergenic
CAGGTTTAAAATACCAGATT+TGG 0.246995 1.1:+11525306 None:intergenic
TGTTAGGAATGTGTACAAAA+AGG 0.252310 1.1:-11525851 MS.gene54542:CDS
CACCTCTTATCCAGTGTCTT+TGG 0.271951 1.1:+11525884 None:intergenic
CCACAACCTCCTCTAGCTTT+TGG 0.276143 1.1:+11526162 None:intergenic
TTTAGGTACTCTGTTAGTTT+TGG 0.293119 1.1:+11523794 None:intergenic
CCACTAGCAGGAAATATCTT+TGG 0.302826 1.1:+11526261 None:intergenic
TACACATTCCTAACAATAAC+AGG 0.308712 1.1:+11525859 None:intergenic
GGCGCCTATTCAAAGCTAAT+TGG 0.320573 1.1:-11526119 MS.gene54542:CDS
ATTTAAATCTAATTTACTTT+TGG 0.339971 1.1:+11524196 None:intergenic
GTTCATTTGGAGACTCAATA+TGG 0.345980 1.1:-11523853 MS.gene54542:CDS
CGATCCAATTAGCTTTGAAT+AGG 0.359456 1.1:+11526115 None:intergenic
GGATGTGTGTAATCACTAAA+AGG 0.359566 1.1:+11525328 None:intergenic
CCTAATACATACATTGCTTA+TGG 0.365269 1.1:-11525244 MS.gene54542:CDS
AAGCAGCTAAAGCTAGAATA+TGG 0.376510 1.1:-11523579 MS.gene54542:intron
GAGGTGAACCTGTTATTGTT+AGG 0.384309 1.1:-11525867 MS.gene54542:CDS
AGGTTTAAAATACCAGATTT+GGG 0.384791 1.1:+11525307 None:intergenic
CATAAGCAATGTATGTATTA+GGG 0.398825 1.1:+11525245 None:intergenic
AAAAGGGTAGTGGCCTTAGC+TGG 0.403239 1.1:-11525834 MS.gene54542:CDS
CGGTGCTCACCACCACGTTA+TGG 0.412467 1.1:-11524051 MS.gene54542:CDS
ATCCTTTAGCTTCACATCTC+CGG 0.416169 1.1:+11525416 None:intergenic
AAGGCAGCTTCTAGAGAAAC+TGG 0.416480 1.1:-11525970 MS.gene54542:CDS
TATGTATTAGGGCCCAAATC+TGG 0.422075 1.1:+11525256 None:intergenic
GAAGATATGCGAGAGCTCTA+TGG 0.426531 1.1:-11524405 MS.gene54542:CDS
AGATTTAAATGTGAGCAATC+AGG 0.430561 1.1:-11524183 MS.gene54542:CDS
TCTCCGATTTCAATGGCATC+GGG 0.432526 1.1:+11525925 None:intergenic
TGCTAGTGGTAATGAGGAAA+TGG 0.444063 1.1:-11526247 MS.gene54542:CDS
GATTACACACATCCCAAATC+TGG 0.445114 1.1:-11525319 MS.gene54542:CDS
TGCCCCGATGCCATTGAAAT+CGG 0.449680 1.1:-11525928 MS.gene54542:CDS
ATGTGGGAATGATGTTCATT+TGG 0.453667 1.1:-11523866 MS.gene54542:CDS
CAGTAGGCAGCTTTGTGGCC+AGG 0.462588 1.1:+11525287 None:intergenic
AAAGAAACAACATTTGTCAA+TGG 0.462982 1.1:-11523976 MS.gene54542:CDS
TTCGGTGTCTCCGATTTCAA+TGG 0.467250 1.1:+11525918 None:intergenic
TCTCATTCAAATAAAAGTGC+TGG 0.471426 1.1:+11523610 None:intergenic
GTCTCCGATTTCAATGGCAT+CGG 0.472775 1.1:+11525924 None:intergenic
ACACACTCATGAACATTCTC+AGG 0.474986 1.1:+11522844 None:intergenic
CCTAAAGAAAGATCAACAAT+AGG 0.475448 1.1:+11526045 None:intergenic
AAAGCTCTCCACATCACCAT+TGG 0.477170 1.1:+11525808 None:intergenic
GGACGTTCGAGCAACATCTC+GGG 0.479960 1.1:-11523476 MS.gene54542:CDS
ATAAAAGTGCTGGTCATGAA+TGG 0.482553 1.1:+11523620 None:intergenic
CAAAACAGTAGGCAGCTTTG+TGG 0.485740 1.1:+11525282 None:intergenic
ATGCCGAGTAATAATTTATG+TGG 0.486125 1.1:-11523883 MS.gene54542:intron
AAAGAAGAGAAACTTGATAC+AGG 0.487148 1.1:-11524248 MS.gene54542:CDS
TTCCAAAGACACTGGATAAG+AGG 0.491460 1.1:-11525886 MS.gene54542:CDS
TCTTTGGAAATGCTCAAATT+CGG 0.492171 1.1:+11525900 None:intergenic
GTCCATGGCCACTTTGATGC+CGG 0.496936 1.1:+11522876 None:intergenic
ACAGGGCGTAGGTACAGAAA+TGG 0.500391 1.1:-11525443 MS.gene54542:intron
TTCTACCAGGTGTTGAACCC+TGG 0.500564 1.1:-11523497 MS.gene54542:intron
AAGCTCTCCACATCACCATT+GGG 0.502711 1.1:+11525809 None:intergenic
AGCCATTGACTGCTTAGCAT+TGG 0.503332 1.1:-11525740 MS.gene54542:CDS
TATGCGAGAGCTCTATGGTC+TGG 0.504835 1.1:-11524400 MS.gene54542:CDS
GTGAGCAATCAGGAAGTCAT+TGG 0.504902 1.1:-11524173 MS.gene54542:CDS
CACCAATGCTAAGCAGTCAA+TGG 0.506168 1.1:+11525738 None:intergenic
AGATCAAATTGCTGAAACCT+TGG 0.520066 1.1:+11524146 None:intergenic
GAGATGTTGCTCGAACGTCC+AGG 0.520762 1.1:+11523479 None:intergenic
TTGAGCATTTCCAAAGACAC+TGG 0.524799 1.1:-11525894 MS.gene54542:CDS
TTTCTATTTCTCACTTGATG+AGG 0.524933 1.1:+11523426 None:intergenic
GTAAACTCAGCACCATGCCT+TGG 0.531044 1.1:+11525361 None:intergenic
ATTTCCTCATTACCACTAGC+AGG 0.532038 1.1:+11526249 None:intergenic
TGGACGTTCGAGCAACATCT+CGG 0.532148 1.1:-11523477 MS.gene54542:CDS
TGGCCTTAGCTGGGACCCAA+TGG 0.532695 1.1:-11525824 MS.gene54542:CDS
ACTTGATGAGGGCATCCTGC+AGG 0.533321 1.1:+11523438 None:intergenic
TGAATAGGCGCCTCAGCGAA+AGG 0.536457 1.1:+11526130 None:intergenic
CCACGTTATGGATCTTGTAA+AGG 0.537951 1.1:-11524039 MS.gene54542:CDS
AGCCGGCATCAAAGTGGCCA+TGG 0.538689 1.1:-11522878 MS.gene54542:CDS
ACACCACAGAAACTATTGCT+TGG 0.541902 1.1:-11526219 MS.gene54542:CDS
GCTTGGAGAGCAGAGACAAA+TGG 0.542638 1.1:-11526202 MS.gene54542:CDS
GAATAGGCGCCTCAGCGAAA+GGG 0.543711 1.1:+11526131 None:intergenic
ACTGCACTTACAAAATTCAC+TGG 0.547119 1.1:+11523734 None:intergenic
CCAAAAGCTAGAGGAGGTTG+TGG 0.547564 1.1:-11526162 MS.gene54542:CDS
TAAAAGTGCTGGTCATGAAT+GGG 0.548176 1.1:+11523621 None:intergenic
TTCTATTTCTCACTTGATGA+GGG 0.551533 1.1:+11523427 None:intergenic
CCAAAGATATTTCCTGCTAG+TGG 0.553074 1.1:-11526261 MS.gene54542:CDS
GAAGAGTGCTTGCCAAGGCA+TGG 0.554789 1.1:-11525373 MS.gene54542:CDS
TCATCAAGTGAGAAATAGAA+AGG 0.557105 1.1:-11523424 MS.gene54542:intron
GAGATGTGAAGCTAAAGGAT+TGG 0.558033 1.1:-11525413 MS.gene54542:CDS
ATTTCCTGCTAGTGGTAATG+AGG 0.560990 1.1:-11526253 MS.gene54542:CDS
GCTTTAGAAGAATTGAGTAG+AGG 0.564319 1.1:-11525220 MS.gene54542:CDS
AAAGGGTAGTGGCCTTAGCT+GGG 0.564975 1.1:-11525833 MS.gene54542:CDS
AGCACATAATTCTGCAAGGA+AGG 0.570992 1.1:-11525989 MS.gene54542:CDS
TCACCATTGGGTCCCAGCTA+AGG 0.582985 1.1:+11525821 None:intergenic
GGCCGGAGATGTGAAGCTAA+AGG 0.583647 1.1:-11525418 MS.gene54542:CDS
AGTAAAGCAGCTGGTTCGCG+TGG 0.584263 1.1:-11524375 MS.gene54542:CDS
AGATGTTGCTCGAACGTCCA+GGG 0.586189 1.1:+11523480 None:intergenic
TAGGTACAGAAATGGATGGC+CGG 0.587659 1.1:-11525435 MS.gene54542:CDS
TCTCCAAGCAATAGTTTCTG+TGG 0.588533 1.1:+11526216 None:intergenic
CGACAAATTGACTAGGGATG+CGG 0.588655 1.1:-11526094 MS.gene54542:CDS
AAAGAAAGATCAACAATAGG+TGG 0.594093 1.1:+11526048 None:intergenic
AAAGAACATATTAAAAGATG+AGG 0.594384 1.1:-11525776 MS.gene54542:CDS
GGTCTGGACAGTAAAGCAGC+TGG 0.596660 1.1:-11524384 MS.gene54542:CDS
CTCAGGCGAAACAAAGTCCA+TGG 0.597300 1.1:+11522861 None:intergenic
ATTGGATCGACAAATTGACT+AGG 0.597444 1.1:-11526101 MS.gene54542:CDS
GACTGCTTAGCATTGGTGCG+AGG 0.598760 1.1:-11525733 MS.gene54542:intron
TTGGATCGACAAATTGACTA+GGG 0.600375 1.1:-11526100 MS.gene54542:CDS
CCTTGTCCTCCAAAAGCTAG+AGG 0.605309 1.1:-11526171 MS.gene54542:CDS
ACATTGTGACATTTCAGATG+CGG 0.609220 1.1:-11525179 MS.gene54542:intron
TGCCGAGTAATAATTTATGT+GGG 0.624361 1.1:-11523882 MS.gene54542:intron
TCACTGGAAGACTAGTTATG+TGG 0.628868 1.1:+11523750 None:intergenic
AAATCTGGCTTCAAAACAGT+AGG 0.630114 1.1:+11525271 None:intergenic
AGTCAATGCTTATGATAATG+TGG 0.631986 1.1:-11524079 MS.gene54542:CDS
GCTGGGACCCAATGGTGATG+TGG 0.635180 1.1:-11525816 MS.gene54542:CDS
GACGTTCGAGCAACATCTCG+GGG 0.640934 1.1:-11523475 MS.gene54542:CDS
CAAATTGACTAGGGATGCGG+AGG 0.641975 1.1:-11526091 MS.gene54542:CDS
AGGAAGTCATTGGTTCACCA+AGG 0.645573 1.1:-11524163 MS.gene54542:CDS
ATTGATAATCAACCTTGTGG+TGG 0.655484 1.1:-11524003 MS.gene54542:CDS
CCTTTACAAGATCCATAACG+TGG 0.659179 1.1:+11524039 None:intergenic
ATGCAGCACATAATTCTGCA+AGG 0.659231 1.1:-11525993 MS.gene54542:CDS
GGCGTAGGTACAGAAATGGA+TGG 0.663078 1.1:-11525439 MS.gene54542:intron
TATTTCAGCCGGCATCAAAG+TGG 0.665466 1.1:-11522884 MS.gene54542:intron
TGTCCTCCAAAAGCTAGAGG+AGG 0.674596 1.1:-11526168 MS.gene54542:CDS
CTCCGATTTCAATGGCATCG+GGG 0.680789 1.1:+11525926 None:intergenic
ATGATTGATAATCAACCTTG+TGG 0.693152 1.1:-11524006 MS.gene54542:CDS
GTACTGCTACCCTTTCGCTG+AGG 0.716344 1.1:-11526140 MS.gene54542:CDS
TTACAAGATCCATAACGTGG+TGG 0.733385 1.1:+11524042 None:intergenic
CTTATGATAATGTGGAACAA+CGG 0.745310 1.1:-11524071 MS.gene54542:CDS
GATCCACGGTAACACCTACG+CGG 0.821090 1.1:+11524334 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAAATCTAATTTACTTT+TGG + chr1.1:11524916-11524935 None:intergenic 10.0%
!! ACAATTATACATATAATGTT+TGG + chr1.1:11524018-11524037 None:intergenic 15.0%
!!! AGGATTATTTTGTATAAATA+GGG - chr1.1:11526043-11526062 MS.gene54542:CDS 15.0%
!!! AGTTTATTATGTGTTTTATA+TGG - chr1.1:11523596-11523615 MS.gene54542:CDS 15.0%
!!! TAGGATTATTTTGTATAAAT+AGG - chr1.1:11526042-11526061 MS.gene54542:CDS 15.0%
!!! TTAATTTGTGATTAGTTTTT+TGG - chr1.1:11525567-11525586 MS.gene54542:intron 15.0%
!!! TTTCTTCTTTAACTTTTTTA+TGG + chr1.1:11524675-11524694 None:intergenic 15.0%
!! AAAAAACAATAATCCAATGA+AGG + chr1.1:11525408-11525427 None:intergenic 20.0%
!! AAAGAACATATTAAAAGATG+AGG - chr1.1:11523333-11523352 MS.gene54542:intron 20.0%
!! ATAAATAGTTCCATTTGTAT+AGG - chr1.1:11524451-11524470 MS.gene54542:intron 20.0%
!! ATTAAAATAGGTCTCTAAAT+AGG - chr1.1:11525899-11525918 MS.gene54542:CDS 20.0%
!! CTTAAAATATCTGAAAAAGA+CGG - chr1.1:11524797-11524816 MS.gene54542:intron 20.0%
!! GAGAAATAATAAAAGAGAAT+AGG + chr1.1:11526141-11526160 None:intergenic 20.0%
!! TGCATAAACATCATTAAAAT+AGG - chr1.1:11525887-11525906 MS.gene54542:CDS 20.0%
!! TTATTTCAAGCCATATATAT+CGG - chr1.1:11523463-11523482 MS.gene54542:CDS 20.0%
!! TTCTGTATAGTTATTTGTTT+AGG - chr1.1:11526019-11526038 MS.gene54542:CDS 20.0%
!!! ACACATAATAAACTTTTGTT+CGG + chr1.1:11523590-11523609 None:intergenic 20.0%
!!! TAATATGTTTTGATCTTCTT+TGG - chr1.1:11525450-11525469 MS.gene54542:intron 20.0%
!!! TAGTTTTCAATCAAATTCTT+GGG - chr1.1:11526182-11526201 MS.gene54542:CDS 20.0%
!!! TCTTTAACTTTTTTATGGTT+TGG + chr1.1:11524670-11524689 None:intergenic 20.0%
! AAAGAAACAACATTTGTCAA+TGG - chr1.1:11525133-11525152 MS.gene54542:intron 25.0%
! ACTCTCTATTGTGTTTATTT+AGG + chr1.1:11525335-11525354 None:intergenic 25.0%
! CATAAGCAATGTATGTATTA+GGG + chr1.1:11523867-11523886 None:intergenic 25.0%
! CTTTACTTTGACAAAATATG+TGG - chr1.1:11524154-11524173 MS.gene54542:CDS 25.0%
! GAGAAATAGAAAGGTAAATA+AGG - chr1.1:11525694-11525713 MS.gene54542:intron 25.0%
! GTATAGTTATTTGTTTAGGT+AGG - chr1.1:11526023-11526042 MS.gene54542:CDS 25.0%
! TGAGAATACTCCTAAAAATT+TGG - chr1.1:11523503-11523522 MS.gene54542:intron 25.0%
! TTATATAGTATGACAGTGTT+AGG - chr1.1:11525972-11525991 MS.gene54542:CDS 25.0%
! TTCCCACATAAATTATTACT+CGG + chr1.1:11525232-11525251 None:intergenic 25.0%
!! AAGTTTTTACCTCTTCTATT+AGG + chr1.1:11525859-11525878 None:intergenic 25.0%
!! AGGTTTAAAATACCAGATTT+GGG + chr1.1:11523805-11523824 None:intergenic 25.0%
!! ATTGATCAGAATACTGTTTT+GGG - chr1.1:11524511-11524530 MS.gene54542:intron 25.0%
!! CACATATTTTGTCAAAGTAA+AGG + chr1.1:11524156-11524175 None:intergenic 25.0%
!! GTAGTTTTCAATCAAATTCT+TGG - chr1.1:11526181-11526200 MS.gene54542:CDS 25.0%
!!! AAATTTTTAGGAGTATTCTC+AGG + chr1.1:11523504-11523523 None:intergenic 25.0%
!!! AATTTACTTTTGGTAGATTC+AGG + chr1.1:11524906-11524925 None:intergenic 25.0%
!!! ATTTACTTTTGGTAGATTCA+GGG + chr1.1:11524905-11524924 None:intergenic 25.0%
!!! CTATAAACTTTTTTTCTACC+AGG - chr1.1:11525599-11525618 MS.gene54542:intron 25.0%
!!! GCAAATTTGTGATTTTTCAA+TGG - chr1.1:11524176-11524195 MS.gene54542:CDS 25.0%
!!! TATGATTCTGAGATTCTTTT+AGG + chr1.1:11525937-11525956 None:intergenic 25.0%
!!! TCTATTTTTCAGCTTTTGAT+TGG - chr1.1:11523548-11523567 MS.gene54542:intron 25.0%
!!! TTAAATGTTTTAACTTGAGC+TGG - chr1.1:11524413-11524432 MS.gene54542:CDS 25.0%
!!! TTCAGATATTTTAAGATCCA+CGG + chr1.1:11524792-11524811 None:intergenic 25.0%
!!! TTTTTTGTGACCGATATATA+TGG + chr1.1:11523476-11523495 None:intergenic 25.0%
AAAGAAAGATCAACAATAGG+TGG + chr1.1:11523064-11523083 None:intergenic 30.0%
AAAGAAGAGAAACTTGATAC+AGG - chr1.1:11524861-11524880 MS.gene54542:intron 30.0%
AAAGCATGTTGAGATTTACT+GGG - chr1.1:11524296-11524315 MS.gene54542:CDS 30.0%
ACAATAATCCAATGAAGGTA+AGG + chr1.1:11525403-11525422 None:intergenic 30.0%
AGATTTAAATGTGAGCAATC+AGG - chr1.1:11524926-11524945 MS.gene54542:intron 30.0%
ATCAGCATATAAAATCGCTA+AGG - chr1.1:11524354-11524373 MS.gene54542:CDS 30.0%
ATGCCGAGTAATAATTTATG+TGG - chr1.1:11525226-11525245 MS.gene54542:CDS 30.0%
ATTGCACAACTAATTTCATG+TGG + chr1.1:11523434-11523453 None:intergenic 30.0%
CCATAAGCAATGTATGTATT+AGG + chr1.1:11523868-11523887 None:intergenic 30.0%
CCTAAAGAAAGATCAACAAT+AGG + chr1.1:11523067-11523086 None:intergenic 30.0%
CCTAATACATACATTGCTTA+TGG - chr1.1:11523865-11523884 MS.gene54542:CDS 30.0%
CCTATTGTTGATCTTTCTTT+AGG - chr1.1:11523064-11523083 MS.gene54542:intron 30.0%
GTTAGGAATGTGTACAAAAA+GGG - chr1.1:11523259-11523278 MS.gene54542:intron 30.0%
TACACATTCCTAACAATAAC+AGG + chr1.1:11523253-11523272 None:intergenic 30.0%
TCATCAAGTGAGAAATAGAA+AGG - chr1.1:11525685-11525704 MS.gene54542:intron 30.0%
TGCCGAGTAATAATTTATGT+GGG - chr1.1:11525227-11525246 MS.gene54542:CDS 30.0%
TGTTAGGAATGTGTACAAAA+AGG - chr1.1:11523258-11523277 MS.gene54542:intron 30.0%
! AAAAGCATGTTGAGATTTAC+TGG - chr1.1:11524295-11524314 MS.gene54542:CDS 30.0%
! AGGGTGTTATGAAATTAGAA+TGG - chr1.1:11526062-11526081 MS.gene54542:CDS 30.0%
! AGTCAATGCTTATGATAATG+TGG - chr1.1:11525030-11525049 MS.gene54542:intron 30.0%
! ATGATTGATAATCAACCTTG+TGG - chr1.1:11525103-11525122 MS.gene54542:intron 30.0%
! CAGGTTTAAAATACCAGATT+TGG + chr1.1:11523806-11523825 None:intergenic 30.0%
! CTTATGATAATGTGGAACAA+CGG - chr1.1:11525038-11525057 MS.gene54542:intron 30.0%
! CTTTTAAGCATCATTGTTAC+TGG + chr1.1:11524131-11524150 None:intergenic 30.0%
! GATTGATCAGAATACTGTTT+TGG - chr1.1:11524510-11524529 MS.gene54542:intron 30.0%
! GGGTGTTATGAAATTAGAAT+GGG - chr1.1:11526063-11526082 MS.gene54542:CDS 30.0%
! GGTGTTATGAAATTAGAATG+GGG - chr1.1:11526064-11526083 MS.gene54542:CDS 30.0%
! TCTCATTCAAATAAAAGTGC+TGG + chr1.1:11525502-11525521 None:intergenic 30.0%
! TCTTTGGAAATGCTCAAATT+CGG + chr1.1:11523212-11523231 None:intergenic 30.0%
! TGTTTGACGACCAAATTTTT+AGG + chr1.1:11523516-11523535 None:intergenic 30.0%
! TTCTATTTCTCACTTGATGA+GGG + chr1.1:11525685-11525704 None:intergenic 30.0%
! TTTCTATTTCTCACTTGATG+AGG + chr1.1:11525686-11525705 None:intergenic 30.0%
! TTTTTCTTGACATTCAAGCA+AGG + chr1.1:11524844-11524863 None:intergenic 30.0%
!! CAAATCTGGTATTTTAAACC+TGG - chr1.1:11523804-11523823 MS.gene54542:intron 30.0%
!! TTCAAAGTGTCATAGTTTTG+TGG - chr1.1:11523090-11523109 MS.gene54542:intron 30.0%
!! TTTAGGTACTCTGTTAGTTT+TGG + chr1.1:11525318-11525337 None:intergenic 30.0%
AAGCAGCTAAAGCTAGAATA+TGG - chr1.1:11525530-11525549 MS.gene54542:intron 35.0%
AATGCCTATCAGTTCTTCAA+AGG - chr1.1:11523636-11523655 MS.gene54542:intron 35.0%
AATGTGTACAAAAAGGGTAG+TGG - chr1.1:11523265-11523284 MS.gene54542:intron 35.0%
ACATTGTGACATTTCAGATG+CGG - chr1.1:11523930-11523949 MS.gene54542:intron 35.0%
ACTGCACTTACAAAATTCAC+TGG + chr1.1:11525378-11525397 None:intergenic 35.0%
AGATCAAATTGCTGAAACCT+TGG + chr1.1:11524966-11524985 None:intergenic 35.0%
ATGTGGGAATGATGTTCATT+TGG - chr1.1:11525243-11525262 MS.gene54542:CDS 35.0%
ATTCTTGGGTTTCTAACACA+TGG - chr1.1:11526196-11526215 MS.gene54542:CDS 35.0%
ATTGGATCGACAAATTGACT+AGG - chr1.1:11523008-11523027 MS.gene54542:intron 35.0%
CATAACATAACCTGCATTAG+TGG + chr1.1:11524588-11524607 None:intergenic 35.0%
CTCTTCGAAAAATTTGATGG+AGG + chr1.1:11523722-11523741 None:intergenic 35.0%
CTGAAAAAGACGGACATTAA+TGG - chr1.1:11524807-11524826 MS.gene54542:intron 35.0%
CTGTACACTACCTATACAAA+TGG + chr1.1:11524464-11524483 None:intergenic 35.0%
GCACTCTTCGAAAAATTTGA+TGG + chr1.1:11523725-11523744 None:intergenic 35.0%
GGATGTGTGTAATCACTAAA+AGG + chr1.1:11523784-11523803 None:intergenic 35.0%
GTTCATTTGGAGACTCAATA+TGG - chr1.1:11525256-11525275 MS.gene54542:CDS 35.0%
TTGGATCGACAAATTGACTA+GGG - chr1.1:11523009-11523028 MS.gene54542:intron 35.0%
! AAATCTGGCTTCAAAACAGT+AGG + chr1.1:11523841-11523860 None:intergenic 35.0%
! ATTGATAATCAACCTTGTGG+TGG - chr1.1:11525106-11525125 MS.gene54542:intron 35.0%
! ATTTCTAGGAACCAAGAAAC+TGG + chr1.1:11525003-11525022 None:intergenic 35.0%
! ATTTGTTAAGCAGTGTTGCT+TGG + chr1.1:11524249-11524268 None:intergenic 35.0%
! GGTTATGTTATGCATTGATC+AGG - chr1.1:11524596-11524615 MS.gene54542:intron 35.0%
! TAGTCTTGATTCCAGTTTCT+TGG - chr1.1:11524989-11525008 MS.gene54542:intron 35.0%
!! ATAAAAGTGCTGGTCATGAA+TGG + chr1.1:11525492-11525511 None:intergenic 35.0%
!! CATGGTTATGTTATTTCAGC+CGG - chr1.1:11526214-11526233 MS.gene54542:CDS 35.0%
!! CGATCCAATTAGCTTTGAAT+AGG + chr1.1:11522997-11523016 None:intergenic 35.0%
!! GCTTTAGAAGAATTGAGTAG+AGG - chr1.1:11523889-11523908 MS.gene54542:intron 35.0%
!! TAAAAGTGCTGGTCATGAAT+GGG + chr1.1:11525491-11525510 None:intergenic 35.0%
!! TGTGTTTTATATGGTGATGC+AGG - chr1.1:11523605-11523624 MS.gene54542:CDS 35.0%
!! TTTTGATCTTCTTTGGCTTC+AGG - chr1.1:11525457-11525476 MS.gene54542:intron 35.0%
!!! ACTGTTTTGAAGCCAGATTT+GGG - chr1.1:11523841-11523860 MS.gene54542:intron 35.0%
!!! CAACATGCTTTTTCATCTCA+TGG + chr1.1:11524287-11524306 None:intergenic 35.0%
!!! TACTGTTTTGAAGCCAGATT+TGG - chr1.1:11523840-11523859 MS.gene54542:intron 35.0%
ACACACTCATGAACATTCTC+AGG + chr1.1:11526268-11526287 None:intergenic 40.0%
ACACCACAGAAACTATTGCT+TGG - chr1.1:11522890-11522909 MS.gene54542:intron 40.0%
AGCACATAATTCTGCAAGGA+AGG - chr1.1:11523120-11523139 MS.gene54542:intron 40.0%
ATGCAGCACATAATTCTGCA+AGG - chr1.1:11523116-11523135 MS.gene54542:intron 40.0%
ATTTCCTCATTACCACTAGC+AGG + chr1.1:11522863-11522882 None:intergenic 40.0%
CCAAAGATATTTCCTGCTAG+TGG - chr1.1:11522848-11522867 MS.gene54542:CDS 40.0%
CCACGTTATGGATCTTGTAA+AGG - chr1.1:11525070-11525089 MS.gene54542:intron 40.0%
CCACTAGCAGGAAATATCTT+TGG + chr1.1:11522851-11522870 None:intergenic 40.0%
CCTTTACAAGATCCATAACG+TGG + chr1.1:11525073-11525092 None:intergenic 40.0%
CGAGACTGACAAAATAGAGT+CGG - chr1.1:11525190-11525209 MS.gene54542:CDS 40.0%
GAGATGTGAAGCTAAAGGAT+TGG - chr1.1:11523696-11523715 MS.gene54542:intron 40.0%
GAGGTGAACCTGTTATTGTT+AGG - chr1.1:11523242-11523261 MS.gene54542:intron 40.0%
GATTACACACATCCCAAATC+TGG - chr1.1:11523790-11523809 MS.gene54542:CDS 40.0%
GCACAACTAATTTCATGTGG+AGG + chr1.1:11523431-11523450 None:intergenic 40.0%
TATGTATTAGGGCCCAAATC+TGG + chr1.1:11523856-11523875 None:intergenic 40.0%
TCTCCAAGCAATAGTTTCTG+TGG + chr1.1:11522896-11522915 None:intergenic 40.0%
TCTTCAAAGGCTACTTGACA+GGG - chr1.1:11523649-11523668 MS.gene54542:intron 40.0%
TCTTCAGACATTTCCTCGTT+CGG - chr1.1:11525163-11525182 MS.gene54542:intron 40.0%
TGCTGATCTAACTACATTGC+AGG + chr1.1:11524381-11524400 None:intergenic 40.0%
TGTACAGTTGCGTGTAAAAC+TGG - chr1.1:11524477-11524496 MS.gene54542:CDS 40.0%
TTACAAGATCCATAACGTGG+TGG + chr1.1:11525070-11525089 None:intergenic 40.0%
TTCCAAAGACACTGGATAAG+AGG - chr1.1:11523223-11523242 MS.gene54542:intron 40.0%
TTCTCCTTATGTTATGCAGC+AGG - chr1.1:11524554-11524573 MS.gene54542:intron 40.0%
TTCTTCAAAGGCTACTTGAC+AGG - chr1.1:11523648-11523667 MS.gene54542:intron 40.0%
TTGAGCATTTCCAAAGACAC+TGG - chr1.1:11523215-11523234 MS.gene54542:intron 40.0%
! ATCCTTTAGCTTCACATCTC+CGG + chr1.1:11523696-11523715 None:intergenic 40.0%
! ATTTCCTGCTAGTGGTAATG+AGG - chr1.1:11522856-11522875 MS.gene54542:CDS 40.0%
! CGACTCTATTTTGTCAGTCT+CGG + chr1.1:11525192-11525211 None:intergenic 40.0%
! GTAGCCTTTGAAGAACTGAT+AGG + chr1.1:11523643-11523662 None:intergenic 40.0%
! GTTTCTTTTGTTCCACCACA+AGG + chr1.1:11525121-11525140 None:intergenic 40.0%
! TCACTGGAAGACTAGTTATG+TGG + chr1.1:11525362-11525381 None:intergenic 40.0%
! TGCTAGTGGTAATGAGGAAA+TGG - chr1.1:11522862-11522881 MS.gene54542:CDS 40.0%
!! ATTGACTCGCAGTCATTTCT+AGG + chr1.1:11525017-11525036 None:intergenic 40.0%
AAAGCTCTCCACATCACCAT+TGG + chr1.1:11523304-11523323 None:intergenic 45.0%
AAGCTCTCCACATCACCATT+GGG + chr1.1:11523303-11523322 None:intergenic 45.0%
AGCACCTGCTGCATAACATA+AGG + chr1.1:11524561-11524580 None:intergenic 45.0%
AGCGATAAACTACCAGCACT+TGG + chr1.1:11524208-11524227 None:intergenic 45.0%
CAAAACAGTAGGCAGCTTTG+TGG + chr1.1:11523830-11523849 None:intergenic 45.0%
CACCAATGCTAAGCAGTCAA+TGG + chr1.1:11523374-11523393 None:intergenic 45.0%
CACCTCTTATCCAGTGTCTT+TGG + chr1.1:11523228-11523247 None:intergenic 45.0%
CCACAAGCACCTAATAGAAG+AGG - chr1.1:11525847-11525866 MS.gene54542:CDS 45.0%
CCTCTTCTATTAGGTGCTTG+TGG + chr1.1:11525850-11525869 None:intergenic 45.0%
CGACAAATTGACTAGGGATG+CGG - chr1.1:11523015-11523034 MS.gene54542:intron 45.0%
CTGTGTGGGACATATTTCGT+AGG - chr1.1:11525283-11525302 MS.gene54542:CDS 45.0%
GAAGATATGCGAGAGCTCTA+TGG - chr1.1:11524704-11524723 MS.gene54542:intron 45.0%
GCGATAAACTACCAGCACTT+GGG + chr1.1:11524207-11524226 None:intergenic 45.0%
GGCGCCTATTCAAAGCTAAT+TGG - chr1.1:11522990-11523009 MS.gene54542:intron 45.0%
GGTGCTAATTCCACTAATGC+AGG - chr1.1:11524575-11524594 MS.gene54542:intron 45.0%
GTCTCCGATTTCAATGGCAT+CGG + chr1.1:11523188-11523207 None:intergenic 45.0%
GTGAGCAATCAGGAAGTCAT+TGG - chr1.1:11524936-11524955 MS.gene54542:intron 45.0%
TAGGTACAGAAATGGATGGC+CGG - chr1.1:11523674-11523693 MS.gene54542:intron 45.0%
TATTTCAGCCGGCATCAAAG+TGG - chr1.1:11526225-11526244 MS.gene54542:CDS 45.0%
TCTCCGATTTCAATGGCATC+GGG + chr1.1:11523187-11523206 None:intergenic 45.0%
TGCAGTTGCCTTACCTTCAT+TGG - chr1.1:11525392-11525411 MS.gene54542:CDS 45.0%
! AAGGCAGCTTCTAGAGAAAC+TGG - chr1.1:11523139-11523158 MS.gene54542:intron 45.0%
! AGCCATTGACTGCTTAGCAT+TGG - chr1.1:11523369-11523388 MS.gene54542:intron 45.0%
! TATGGTTTGGATTGCCATGC+TGG + chr1.1:11524657-11524676 None:intergenic 45.0%
!! ACTCAATATGGAGTGCTGTG+TGG - chr1.1:11525268-11525287 MS.gene54542:CDS 45.0%
!! AGGAAGTCATTGGTTCACCA+AGG - chr1.1:11524946-11524965 MS.gene54542:intron 45.0%
!! AGTGCTGGTAGTTTATCGCT+TGG - chr1.1:11524208-11524227 MS.gene54542:CDS 45.0%
!! CTCAATATGGAGTGCTGTGT+GGG - chr1.1:11525269-11525288 MS.gene54542:CDS 45.0%
!! GATGTGGAGAGCTTTTAGGT+TGG - chr1.1:11523309-11523328 MS.gene54542:intron 45.0%
!! TGGTGATGTGGAGAGCTTTT+AGG - chr1.1:11523305-11523324 MS.gene54542:intron 45.0%
!! TTCGGTGTCTCCGATTTCAA+TGG + chr1.1:11523194-11523213 None:intergenic 45.0%
!!! GATGCTGTTTTCATACCTGC+AGG - chr1.1:11525656-11525675 MS.gene54542:intron 45.0%
!!! TTTTCGAAGAGTGCTTGCCA+AGG - chr1.1:11523731-11523750 MS.gene54542:intron 45.0%
!! TATATTAAAAATAAAATCAA+AGG - chr1.1:11525726-11525745 MS.gene54542:intron 5.0%
ACAGGGCGTAGGTACAGAAA+TGG - chr1.1:11523666-11523685 MS.gene54542:intron 50.0%
AGATGTTGCTCGAACGTCCA+GGG + chr1.1:11525632-11525651 None:intergenic 50.0%
CAAATTGACTAGGGATGCGG+AGG - chr1.1:11523018-11523037 MS.gene54542:intron 50.0%
CCAAAAGCTAGAGGAGGTTG+TGG - chr1.1:11522947-11522966 MS.gene54542:intron 50.0%
CCTTGTCCTCCAAAAGCTAG+AGG - chr1.1:11522938-11522957 MS.gene54542:intron 50.0%
CTCAGGCGAAACAAAGTCCA+TGG + chr1.1:11526251-11526270 None:intergenic 50.0%
CTCCGATTTCAATGGCATCG+GGG + chr1.1:11523186-11523205 None:intergenic 50.0%
CTGACGTAAAGACACCAGCA+TGG - chr1.1:11524640-11524659 MS.gene54542:intron 50.0%
GCTTGGAGAGCAGAGACAAA+TGG - chr1.1:11522907-11522926 MS.gene54542:intron 50.0%
GGCGTAGGTACAGAAATGGA+TGG - chr1.1:11523670-11523689 MS.gene54542:intron 50.0%
GTAAACTCAGCACCATGCCT+TGG + chr1.1:11523751-11523770 None:intergenic 50.0%
GTGGGACATATTTCGTAGGC+AGG - chr1.1:11525287-11525306 MS.gene54542:CDS 50.0%
TATGCGAGAGCTCTATGGTC+TGG - chr1.1:11524709-11524728 MS.gene54542:intron 50.0%
TGCCCCGATGCCATTGAAAT+CGG - chr1.1:11523181-11523200 MS.gene54542:intron 50.0%
TGGACGTTCGAGCAACATCT+CGG - chr1.1:11525632-11525651 MS.gene54542:intron 50.0%
TGTCCTCCAAAAGCTAGAGG+AGG - chr1.1:11522941-11522960 MS.gene54542:intron 50.0%
! AAAAGGGTAGTGGCCTTAGC+TGG - chr1.1:11523275-11523294 MS.gene54542:intron 50.0%
! AAAGGGTAGTGGCCTTAGCT+GGG - chr1.1:11523276-11523295 MS.gene54542:intron 50.0%
!! AAATGCAAAAAGCGCCGCGT+AGG - chr1.1:11524761-11524780 MS.gene54542:intron 50.0%
!! TTCTACCAGGTGTTGAACCC+TGG - chr1.1:11525612-11525631 MS.gene54542:intron 50.0%
!!! CAACCTCCTCTAGCTTTTGG+AGG + chr1.1:11522947-11522966 None:intergenic 50.0%
!!! CCACAACCTCCTCTAGCTTT+TGG + chr1.1:11522950-11522969 None:intergenic 50.0%
!!! CCTCTAGCTTTTGGAGGACA+AGG + chr1.1:11522941-11522960 None:intergenic 50.0%
AACGTCCAGGGTTCAACACC+TGG + chr1.1:11525620-11525639 None:intergenic 55.0%
AAGGCTACTTGACAGGGCGT+AGG - chr1.1:11523655-11523674 MS.gene54542:intron 55.0%
CAATGGTGTGACCCAAGTGC+TGG - chr1.1:11524193-11524212 MS.gene54542:CDS 55.0%
GAATAGGCGCCTCAGCGAAA+GGG + chr1.1:11522981-11523000 None:intergenic 55.0%
GACGTTCGAGCAACATCTCG+GGG - chr1.1:11525634-11525653 MS.gene54542:intron 55.0%
GAGATGTTGCTCGAACGTCC+AGG + chr1.1:11525633-11525652 None:intergenic 55.0%
GATCCACGGTAACACCTACG+CGG + chr1.1:11524778-11524797 None:intergenic 55.0%
GGACGTTCGAGCAACATCTC+GGG - chr1.1:11525633-11525652 MS.gene54542:intron 55.0%
GGCCGGAGATGTGAAGCTAA+AGG - chr1.1:11523691-11523710 MS.gene54542:intron 55.0%
GGTCTGGACAGTAAAGCAGC+TGG - chr1.1:11524725-11524744 MS.gene54542:intron 55.0%
GTACTGCTACCCTTTCGCTG+AGG - chr1.1:11522969-11522988 MS.gene54542:intron 55.0%
TCACCATTGGGTCCCAGCTA+AGG + chr1.1:11523291-11523310 None:intergenic 55.0%
TCAGTCTCGGTATCCGAACG+AGG + chr1.1:11525179-11525198 None:intergenic 55.0%
TGAATAGGCGCCTCAGCGAA+AGG + chr1.1:11522982-11523001 None:intergenic 55.0%
TTGGGTCGCATGTCACACAC+AGG - chr1.1:11524529-11524548 MS.gene54542:intron 55.0%
! GTCCATGGCCACTTTGATGC+CGG + chr1.1:11526236-11526255 None:intergenic 55.0%
!! ACTTGATGAGGGCATCCTGC+AGG + chr1.1:11525674-11525693 None:intergenic 55.0%
!! AGTAAAGCAGCTGGTTCGCG+TGG - chr1.1:11524734-11524753 MS.gene54542:intron 55.0%
!! GAAGAGTGCTTGCCAAGGCA+TGG - chr1.1:11523736-11523755 MS.gene54542:intron 55.0%
!! GACTGCTTAGCATTGGTGCG+AGG - chr1.1:11523376-11523395 MS.gene54542:intron 55.0%
AGCCGGCATCAAAGTGGCCA+TGG - chr1.1:11526231-11526250 MS.gene54542:CDS 60.0%
CGGTGCTCACCACCACGTTA+TGG - chr1.1:11525058-11525077 MS.gene54542:intron 60.0%
! CAGTAGGCAGCTTTGTGGCC+AGG + chr1.1:11523825-11523844 None:intergenic 60.0%
! GCTGGGACCCAATGGTGATG+TGG - chr1.1:11523293-11523312 MS.gene54542:intron 60.0%
! TGGCCTTAGCTGGGACCCAA+TGG - chr1.1:11523285-11523304 MS.gene54542:intron 60.0%
! GCGCCGCGTAGGTGTTACCG+TGG - chr1.1:11524772-11524791 MS.gene54542:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 11522836 11526295 11522836 ID=MS.gene54542
chr1.1 mRNA 11522836 11526295 11522836 ID=MS.gene54542.t1;Parent=MS.gene54542
chr1.1 exon 11525734 11526295 11525734 ID=MS.gene54542.t1.exon1;Parent=MS.gene54542.t1
chr1.1 CDS 11525734 11526295 11525734 ID=cds.MS.gene54542.t1;Parent=MS.gene54542.t1
chr1.1 exon 11525180 11525454 11525180 ID=MS.gene54542.t1.exon2;Parent=MS.gene54542.t1
chr1.1 CDS 11525180 11525454 11525180 ID=cds.MS.gene54542.t1;Parent=MS.gene54542.t1
chr1.1 exon 11524475 11524513 11524475 ID=MS.gene54542.t1.exon3;Parent=MS.gene54542.t1
chr1.1 CDS 11524475 11524513 11524475 ID=cds.MS.gene54542.t1;Parent=MS.gene54542.t1
chr1.1 exon 11524347 11524442 11524347 ID=MS.gene54542.t1.exon4;Parent=MS.gene54542.t1
chr1.1 CDS 11524347 11524442 11524347 ID=cds.MS.gene54542.t1;Parent=MS.gene54542.t1
chr1.1 exon 11524129 11524315 11524129 ID=MS.gene54542.t1.exon5;Parent=MS.gene54542.t1
chr1.1 CDS 11524129 11524315 11524129 ID=cds.MS.gene54542.t1;Parent=MS.gene54542.t1
chr1.1 exon 11523952 11524099 11523952 ID=MS.gene54542.t1.exon6;Parent=MS.gene54542.t1
chr1.1 CDS 11523952 11524099 11523952 ID=cds.MS.gene54542.t1;Parent=MS.gene54542.t1
chr1.1 exon 11523852 11523897 11523852 ID=MS.gene54542.t1.exon7;Parent=MS.gene54542.t1
chr1.1 CDS 11523852 11523897 11523852 ID=cds.MS.gene54542.t1;Parent=MS.gene54542.t1
chr1.1 exon 11523745 11523822 11523745 ID=MS.gene54542.t1.exon8;Parent=MS.gene54542.t1
chr1.1 CDS 11523745 11523822 11523745 ID=cds.MS.gene54542.t1;Parent=MS.gene54542.t1
chr1.1 exon 11523580 11523652 11523580 ID=MS.gene54542.t1.exon9;Parent=MS.gene54542.t1
chr1.1 CDS 11523580 11523652 11523580 ID=cds.MS.gene54542.t1;Parent=MS.gene54542.t1
chr1.1 exon 11523425 11523510 11523425 ID=MS.gene54542.t1.exon10;Parent=MS.gene54542.t1
chr1.1 CDS 11523425 11523510 11523425 ID=cds.MS.gene54542.t1;Parent=MS.gene54542.t1
chr1.1 exon 11522836 11522898 11522836 ID=MS.gene54542.t1.exon11;Parent=MS.gene54542.t1
chr1.1 CDS 11522836 11522898 11522836 ID=cds.MS.gene54542.t1;Parent=MS.gene54542.t1
Gene Sequence

>MS.gene54542

ATGGAGTACATTCCAAAGATATTTCCTGCTAGTGGTAATGAGGAAATGGTCGATACACCACAGAAACTATTGCTTGGAGAGCAGAGACAAATGGCAAGCATTCCTTGTCCTCCAAAAGCTAGAGGAGGTTGTGGTACTGCTACCCTTTCGCTGAGGCGCCTATTCAAAGCTAATTGGATCGACAAATTGACTAGGGATGCGGAGGAACTTACAATCAAATATCAGCCACCTATTGTTGATCTTTCTTTAGGATGTTCAAAGTGTCATAGTTTTGTGGAAGATGCAGCACATAATTCTGCAAGGAAGGCAGCTTCTAGAGAAACTGGTCATGACAACTTTTTGTACTGCCCCGATGCCATTGAAATCGGAGACACCGAATTTGAGCATTTCCAAAGACACTGGATAAGAGGTGAACCTGTTATTGTTAGGAATGTGTACAAAAAGGGTAGTGGCCTTAGCTGGGACCCAATGGTGATGTGGAGAGCTTTTAGGTTGGCAAAGAACATATTAAAAGATGAGGCAGATACTTTTAAAGCCATTGACTGCTTAGCATTGGTGCGAGGTTCGTGTTTTGATTTCTAGATTGAATAAGCCTCCACATGAAATTAGTTGTGCAATTATTTTTAATTATTTCAAGCCATATATATCGGTCACAAAAAAATTATCCTGAGAATACTCCTAAAAATTTGGTCGTCAAACAACAATCTACTCATCTATTTTTCAGCTTTTGATTGGAGATTCTTATTATAGTCCGAACAAAAGTTTATTATGTGTTTTATATGGTGATGCAGGTACAAGTTAATGCCTATCAGTTCTTCAAAGGCTACTTGACAGGGCGTAGGTACAGAAATGGATGGCCGGAGATGTGAAGCTAAAGGATTGGCCTCCATCAAATTTTTCGAAGAGTGCTTGCCAAGGCATGGTGCTGAGTTTACAGCGATGCTTCCTTTTAGTGATTACACACATCCCAAATCTGGTATTTTAAACCTGGCCACAAAGCTGCCTACTGTTTTGAAGCCAGATTTGGGCCCTAATACATACATTGCTTATGGAGCTTTAGAAGAATTGAGTAGAGGTGATTCTGTGACAAAATTACATTGTGACATTTCAGATGCGGTAAGTTCTTAAATTAGAGATTTCTTCTGCTTGAATTTGATTATACACAAATAATGCTAAGTGCCAAACATTATATGTATAATTGTTCTATTTTTTATGAGTGAAATATGTATGACTGTTCTATTTCTACTTAATTTACACATTGTGAAATATGTATATTGTTCAAGTTAACAAAACCAGTAACAATGATGCTTAAAAGAACCTTTACTTTGACAAAATATGTGGCAAATTTGTGATTTTTCAATGGTGTGACCCAAGTGCTGGTAGTTTATCGCTTGGAATAAAAAATAATAACCAAGCAACACTGCTTAACAAATTACAAGTCTTGTATTCCATGAGATGAAAAAGCATGTTGAGATTTACTGGGATTAAAAGTTAAAACTAGTTTTATCAGCTTAAAAGATCAGCATATAAAATCGCTAAGGACCTGCAATGTAGTTAGATCAGCATATGTAACTAGCTTAAATGTTTTAACTTGAGCTGGAGTGTTAGACAAGTAATAAATAGTTCCATTTGTATAGGTAGTGTACAGTTGCGTGTAAAACTGGAAAATACATTGATTGATCAGAATACTGTTTTGGGTCGCATGTCACACACAGGTTTTCTCCTTATGTTATGCAGCAGGTGCTAATTCCACTAATGCAGGTTATGTTATGCATTGATCAGGTCAATATTCTGACACACACAGCTGACGTAAAGACACCAGCATGGCAATCCAAACCATAAAAAAGTTAAAGAAGAAATATGAAGTTGAAGATATGCGAGAGCTCTATGGTCTGGACAGTAAAGCAGCTGGTTCGCGTGGAAGAAAATGCAAAAAGCGCCGCGTAGGTGTTACCGTGGATCTTAAAATATCTGAAAAAGACGGACATTAATGGTAGCGACTCAACCTTGCTTGAATGTCAAGAAAAAGAAGAGAAACTTGATACAGGAGCTTGTGTTCAAGAGTTCCCTGAATCTACCAAAAGTAAATTAGATTTAAATGTGAGCAATCAGGAAGTCATTGGTTCACCAAGGTTTCAGCAATTTGATCTCAATAGTCTTGATTCCAGTTTCTTGGTTCCTAGAAATGACTGCGAGTCAATGCTTATGATAATGTGGAACAACGGTGCTCACCACCACGTTATGGATCTTGTAAAGGAATTTCATCAATGATTGATAATCAACCTTGTGGTGGAACAAAAGAAACAACATTTGTCAATGGATTAGATTCTTCAGACATTTCCTCGTTCGGATACCGAGACTGACAAAATAGAGTCGGTTCAAAAATGAAGATGCCGAGTAATAATTTATGTGGGAATGATGTTCATTTGGAGACTCAATATGGAGTGCTGTGTGGGACATATTTCGTAGGCAGGATGTACCAAAACTAACAGAGTACCTAAATAAACACAATAGAGAGTTTCGCCACATAACTAGTCTTCCAGTGAATTTTGTAAGTGCAGTTGCCTTACCTTCATTGGATTATTGTTTTTTTGTACAACTTTGTTTTCTAAATTAATATGTTTTGATCTTCTTTGGCTTCAGGTGATTCATCCCATTCATGACCAGCACTTTTATTTGAATGAGAAACATAAAAAGCAGCTAAAGCTAGAATATGGTATGAAATTATGCTTTAATTTGTGATTAGTTTTTTGGATTTTGTAGCTATAAACTTTTTTTCTACCAGGTGTTGAACCCTGGACGTTCGAGCAACATCTCGGGGATGCTGTTTTCATACCTGCAGGATGCCCTCATCAAGTGAGAAATAGAAAGGTAAATAAGGACACAGTTTTATATTAAAAATAAAATCAAAGGACTGAAACTAGTTTACAATTCTTTTACTTATATAAACATTTTAGCGCAATCACAAAAATTAGAATTTGATCTCTATAATTCAGCGATGAATCTTTGAACCACAAGCACCTAATAGAAGAGGTAAAAACTTATTTCATATGCATAAACATCATTAAAATAGGTCTCTAAATAGGTTTTCAAGACAGCCTAAAAGAATCTCAGAATCATATATCTTAAATTTTTGTTATATAGTATGACAGTGTTAGGATATACTAGTTATAAGAGAACTAGTTCTGTATAGTTATTTGTTTAGGTAGGATTATTTTGTATAAATAGGGTGTTATGAAATTAGAATGGGGTATCATTGAATACTGTATCTTTTGTGAGTAGAGTAGCGACTCTATTTTTCTCCTATTCTCTTTTATTATTTCTCATCTTTCAGTAAAATTGTTCGTAGTTTTCAATCAAATTCTTGGGTTTCTAACACATGGTTATGTTATTTCAGCCGGCATCAAAGTGGCCATGGACTTTGTTTCGCCTGAGAATGTTCATGAGTGTGTTCGATTGA
Protein sequence

>MS.gene54542.t1

MEYIPKIFPASGNEEMVDTPQKLLLGEQRQMASIPCPPKARGGCGTATLSLRRLFKANWIDKLTRDAEELTIKYQPPIVDLSLGCSKCHSFVEDAAHNSARKAASRETGHDNFLYCPDAIEIGDTEFEHFQRHWIRGEPVIVRNVYKKGSGLSWDPMVMWRAFRLAKNILKDEADTFKAIDCLALVRGTEMDGRRCEAKGLASIKFFEECLPRHGAEFTAMLPFSDYTHPKSGILNLATKLPTVLKPDLGPNTYIAYGALEELSRGDSVTKLHCDISDAVNILTHTADVKTPKKYEVEDMRELYGLDSKAAGSRGRKCKKRRVGTDINGSDSTLLECQEKEEKLDTGACVQEFPESTKSKLDLNVSNQEVIGSPRFQQFDLNSLDSINAYDNVEQRCSPPRYGSCKGISSMIDNQPCGGTKETTFVNGLDSSDISSNNLCGNDVHLETQYGDVPKLTEYLNKHNREFRHITSLPVNFVIHPIHDQHFYLNEKHKKQLKLEYGVEPWTFEQHLGDAVFIPAGCPHQVRNRKPASKWPWTLFRLRMFMSVFD